Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27687.t1 | XP_003623886.2 | 94.7 | 247 | 13 | 0 | 1 | 247 | 1 | 247 | 3.30E-134 | 487.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27687.t1 | Q1W376 | 89.4 | 245 | 26 | 0 | 1 | 245 | 1 | 245 | 1.2e-129 | 463.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27687.t1 | G7L3I4 | 94.7 | 247 | 13 | 0 | 1 | 247 | 1 | 247 | 2.4e-134 | 487.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene27687 | 0.805875 | 1.08E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene27687 | 0.841266 | 5.27E-58 | -1.69E-46 |
| MS.gene050320 | MS.gene27687 | 0.831802 | 1.36E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene27687 | 0.835262 | 1.86E-56 | -1.69E-46 |
| MS.gene051063 | MS.gene27687 | 0.83482 | 2.40E-56 | -1.69E-46 |
| MS.gene051330 | MS.gene27687 | 0.838985 | 2.08E-57 | -1.69E-46 |
| MS.gene051451 | MS.gene27687 | 0.801244 | 9.87E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene27687 | 0.839289 | 1.73E-57 | -1.69E-46 |
| MS.gene051748 | MS.gene27687 | 0.852017 | 6.08E-61 | -1.69E-46 |
| MS.gene051756 | MS.gene27687 | 0.80269 | 4.98E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene27687 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene27687 | 0.872087 | 4.16E-67 | -1.69E-46 |
| MS.gene052133 | MS.gene27687 | 0.84114 | 5.69E-58 | -1.69E-46 |
| MS.gene052202 | MS.gene27687 | 0.817197 | 3.74E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene27687 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene27687 | 0.821086 | 4.87E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene27687 | 0.812808 | 3.52E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene27687 | 0.839526 | 1.50E-57 | -1.69E-46 |
| MS.gene053109 | MS.gene27687 | 0.822255 | 2.61E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene27687 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene056075 | MS.gene27687 | 0.829665 | 4.53E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene27687 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene056432 | MS.gene27687 | 0.802377 | 5.78E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene27687 | 0.86333 | 2.69E-64 | -1.69E-46 |
| MS.gene057094 | MS.gene27687 | 0.844111 | 9.26E-59 | -1.69E-46 |
| MS.gene057234 | MS.gene27687 | 0.816079 | 6.65E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene27687 | 0.812083 | 5.07E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene27687 | 0.851609 | 7.94E-61 | -1.69E-46 |
| MS.gene058852 | MS.gene27687 | 0.812018 | 5.23E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene27687 | 0.841611 | 4.28E-58 | -1.69E-46 |
| MS.gene059171 | MS.gene27687 | 0.810216 | 1.29E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene27687 | 0.900648 | 5.94E-78 | -1.69E-46 |
| MS.gene060429 | MS.gene27687 | 0.817802 | 2.73E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27687.t1 | MTR_7g076670 | 94.737 | 247 | 13 | 0 | 1 | 247 | 1 | 247 | 1.30e-178 | 490 |
| MS.gene27687.t1 | MTR_7g076670 | 93.927 | 247 | 13 | 1 | 1 | 247 | 1 | 245 | 7.17e-175 | 481 |
| MS.gene27687.t1 | MTR_7g076670 | 94.340 | 212 | 12 | 0 | 1 | 212 | 1 | 212 | 5.67e-151 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27687.t1 | AT2G45790 | 82.041 | 245 | 44 | 0 | 1 | 245 | 1 | 245 | 3.58e-155 | 431 |
Find 51 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTCACTAACCTCTTAAT+AGG | 0.197187 | 7.3:+29485561 | None:intergenic |
| CAAACTCGTCTCTTTCTTCT+TGG | 0.197416 | 7.3:+29485412 | None:intergenic |
| AAGCAATCACACCAGGTTTC+AGG | 0.231242 | 7.3:+29487088 | None:intergenic |
| ATTGCTTTGTTTGATGTTGA+TGG | 0.316545 | 7.3:-29487072 | MS.gene27687:CDS |
| CAGAGCTTGAAGACATTCAT+TGG | 0.326846 | 7.3:-29485891 | MS.gene27687:CDS |
| TTGTAACGGTTGGAGTTGTT+GGG | 0.339961 | 7.3:-29486387 | MS.gene27687:CDS |
| GAGCAGATTCATAAATTTCA+TGG | 0.349247 | 7.3:+29483974 | None:intergenic |
| ATTGTAACGGTTGGAGTTGT+TGG | 0.366862 | 7.3:-29486388 | MS.gene27687:CDS |
| GCAGTGTACATCTCTCTTCC+TGG | 0.367520 | 7.3:-29483736 | MS.gene27687:CDS |
| CACTGCTTGATAGTATCTTC+AGG | 0.385900 | 7.3:+29483753 | None:intergenic |
| TACTGCTTGAGATACCTTGA+TGG | 0.396477 | 7.3:-29485056 | MS.gene27687:CDS |
| TGGCTACAGTTTCTCCCAAT+AGG | 0.406761 | 7.3:+29485432 | None:intergenic |
| GCTTCATTACATTGCTGACT+TGG | 0.410076 | 7.3:-29485589 | MS.gene27687:CDS |
| AGAGCTTGAAGACATTCATT+GGG | 0.413591 | 7.3:-29485890 | MS.gene27687:CDS |
| AAAGAATAGAATACCTTCCT+TGG | 0.425118 | 7.3:+29487036 | None:intergenic |
| ATCTCACTAACCTCTTAATA+GGG | 0.431862 | 7.3:+29485562 | None:intergenic |
| TATGAATCTGCTCGGACTAT+CGG | 0.438872 | 7.3:-29483964 | MS.gene27687:CDS |
| TGTATGAACTGCAACATCTC+TGG | 0.440563 | 7.3:+29486571 | None:intergenic |
| ATGTTGAATGTGTCACCTAT+TGG | 0.447595 | 7.3:-29485447 | MS.gene27687:CDS |
| ACTTGGATATCCCTATTAAG+AGG | 0.458360 | 7.3:-29485572 | MS.gene27687:intron |
| ATGAATCTGCTCGGACTATC+GGG | 0.462025 | 7.3:-29483963 | MS.gene27687:CDS |
| CATAAGCAAGGACAGCTCAT+TGG | 0.473469 | 7.3:-29486055 | MS.gene27687:CDS |
| AAAACAATAATCATAGTCAT+TGG | 0.476754 | 7.3:+29486099 | None:intergenic |
| AGCAATCACACCAGGTTTCA+GGG | 0.498276 | 7.3:+29487089 | None:intergenic |
| TGTAACGGTTGGAGTTGTTG+GGG | 0.499649 | 7.3:-29486386 | MS.gene27687:CDS |
| TCTGAGCAACTTGGTCAGAC+AGG | 0.503594 | 7.3:-29486343 | MS.gene27687:intron |
| TGTTGAATGTGTCACCTATT+GGG | 0.513383 | 7.3:-29485446 | MS.gene27687:CDS |
| ATGAAATTTATGAATCTGCT+CGG | 0.534020 | 7.3:-29483972 | MS.gene27687:CDS |
| ATAATGGCTGCCCTGAAACC+TGG | 0.534391 | 7.3:-29487099 | MS.gene27687:CDS |
| ACTGCTTGATAGTATCTTCA+GGG | 0.539223 | 7.3:+29483754 | None:intergenic |
| GGTACACAGATTGTAACGGT+TGG | 0.549280 | 7.3:-29486397 | MS.gene27687:intron |
| CATTTATTGAGTTCCGTAGT+GGG | 0.550324 | 7.3:-29485470 | MS.gene27687:CDS |
| AAAGCTTATCTGTCCTCCAA+TGG | 0.558484 | 7.3:+29485200 | None:intergenic |
| CAGTGTACATCTCTCTTCCT+GGG | 0.558609 | 7.3:-29483735 | MS.gene27687:CDS |
| CTTGATAGTATCTTCAGGGC+TGG | 0.567801 | 7.3:+29483758 | None:intergenic |
| GGATTTCATTGAAACCATCA+AGG | 0.573964 | 7.3:+29485042 | None:intergenic |
| ACATTTATTGAGTTCCGTAG+TGG | 0.588865 | 7.3:-29485471 | MS.gene27687:CDS |
| AGGACAGCTCATTGGAACTC+AGG | 0.590199 | 7.3:-29486047 | MS.gene27687:intron |
| CATTGGGGATGAACAGCTCA+AGG | 0.593332 | 7.3:-29485874 | MS.gene27687:intron |
| GTAAAGATATCTGAGCAACT+TGG | 0.594397 | 7.3:-29486352 | MS.gene27687:CDS |
| TTTGGGTACACAGATTGTAA+CGG | 0.605387 | 7.3:-29486401 | MS.gene27687:intron |
| ATGGAACTCTTACAGCTCCA+AGG | 0.610758 | 7.3:-29487053 | MS.gene27687:CDS |
| GGTCTTGTGGCTCATAAGCA+AGG | 0.614182 | 7.3:-29486067 | MS.gene27687:CDS |
| GTAACGGTTGGAGTTGTTGG+GGG | 0.614289 | 7.3:-29486385 | MS.gene27687:CDS |
| AACTCTTACAGCTCCAAGGA+AGG | 0.622019 | 7.3:-29487049 | MS.gene27687:intron |
| CGAGTTTGAGAAGTATGACA+AGG | 0.638409 | 7.3:-29485397 | MS.gene27687:intron |
| GAGCTTGAAGACATTCATTG+GGG | 0.646459 | 7.3:-29485889 | MS.gene27687:CDS |
| GTTCATACAAGATCTACGAA+AGG | 0.660966 | 7.3:-29486557 | MS.gene27687:intron |
| ACACATTCAACATCCCACTA+CGG | 0.661979 | 7.3:+29485457 | None:intergenic |
| TCAAACAAAGCAATCACACC+AGG | 0.663993 | 7.3:+29487081 | None:intergenic |
| GCTCGGACTATCGGGCACAC+AGG | 0.676461 | 7.3:-29483955 | MS.gene27687:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTCTTATATAGATT+AGG | + | chr7.3:29485326-29485345 | None:intergenic | 10.0% |
| !!! | ATCTATATAAGAAAAATTTT+AGG | - | chr7.3:29485327-29485346 | MS.gene27687:intron | 10.0% |
| !!! | TCTATATAAGAAAAATTTTA+GGG | - | chr7.3:29485328-29485347 | MS.gene27687:intron | 10.0% |
| !! | AAAGATAATTAACAACATAA+TGG | - | chr7.3:29486084-29486103 | MS.gene27687:CDS | 15.0% |
| !! | AAGAGTTGTTAAATAATTAA+TGG | - | chr7.3:29483993-29484012 | MS.gene27687:intron | 15.0% |
| !! | AATGAAAAAGATAAAAGTTT+AGG | + | chr7.3:29486807-29486826 | None:intergenic | 15.0% |
| !!! | CTATATAAGAAAAATTTTAG+GGG | - | chr7.3:29485329-29485348 | MS.gene27687:intron | 15.0% |
| !! | AAAACAATAATCATAGTCAT+TGG | + | chr7.3:29484728-29484747 | None:intergenic | 20.0% |
| !! | AATTACCTAAAATCAATCAA+TGG | - | chr7.3:29485997-29486016 | MS.gene27687:intron | 20.0% |
| !! | ATTATATATATGTACTCTAC+AGG | - | chr7.3:29485719-29485738 | MS.gene27687:intron | 20.0% |
| !! | GAATAGGAAAAGAAATATAT+AGG | + | chr7.3:29484982-29485001 | None:intergenic | 20.0% |
| !! | TAAATAATTAATGGTTATGC+TGG | - | chr7.3:29484002-29484021 | MS.gene27687:intron | 20.0% |
| !! | TAGTACTTCACAATAAATTA+TGG | + | chr7.3:29485840-29485859 | None:intergenic | 20.0% |
| !! | TATATATAATCAAAACCTGT+TGG | + | chr7.3:29485709-29485728 | None:intergenic | 20.0% |
| !! | TCTAATTTATAATTCCATGA+TGG | + | chr7.3:29486657-29486676 | None:intergenic | 20.0% |
| !! | TGGAATTATAAATTAGATCT+TGG | - | chr7.3:29486660-29486679 | MS.gene27687:intron | 20.0% |
| !! | TTGTGTAACAAGAATTTATT+TGG | - | chr7.3:29485963-29485982 | MS.gene27687:intron | 20.0% |
| !!! | AATAACATAATGTATTTTGC+AGG | - | chr7.3:29485196-29485215 | MS.gene27687:intron | 20.0% |
| !!! | ATTTCTTATTTCTGATTGTT+TGG | - | chr7.3:29484179-29484198 | MS.gene27687:intron | 20.0% |
| !!! | TCTTTAATTTGAATTGCTAA+AGG | - | chr7.3:29485492-29485511 | MS.gene27687:intron | 20.0% |
| !!! | TTATTTTTTGGTTAAGTGAT+AGG | - | chr7.3:29485683-29485702 | MS.gene27687:intron | 20.0% |
| !!! | TTTAAGAACTTTCAATTTTG+TGG | - | chr7.3:29486535-29486554 | MS.gene27687:intron | 20.0% |
| !!! | TTTGTGAAAAAAATCGATTT+TGG | - | chr7.3:29484572-29484591 | MS.gene27687:intron | 20.0% |
| ! | AAAAAATGTAACACTGAGAA+AGG | + | chr7.3:29486449-29486468 | None:intergenic | 25.0% |
| ! | AAACTTTAGTCAGTTTATGA+TGG | - | chr7.3:29486123-29486142 | MS.gene27687:intron | 25.0% |
| ! | AACAAAAAAGAGCAAAGAAT+AGG | + | chr7.3:29484370-29484389 | None:intergenic | 25.0% |
| ! | ACTAAAAACCAAATAAATGC+TGG | - | chr7.3:29486987-29487006 | MS.gene27687:intron | 25.0% |
| ! | ATATCTCTATACAATGCTTA+GGG | + | chr7.3:29486760-29486779 | None:intergenic | 25.0% |
| ! | ATGAAATTTATGAATCTGCT+CGG | - | chr7.3:29486852-29486871 | MS.gene27687:intron | 25.0% |
| ! | CATCCATTAAAATAACATAC+TGG | - | chr7.3:29484641-29484660 | MS.gene27687:intron | 25.0% |
| ! | CATTATAAAGCTTAGAAGAT+AGG | - | chr7.3:29485093-29485112 | MS.gene27687:intron | 25.0% |
| ! | CTAAAATCAATCAATGGTTA+TGG | - | chr7.3:29486003-29486022 | MS.gene27687:intron | 25.0% |
| ! | CTAAGTAGAAAGAAAATATG+TGG | + | chr7.3:29486605-29486624 | None:intergenic | 25.0% |
| ! | TATATCTCTATACAATGCTT+AGG | + | chr7.3:29486761-29486780 | None:intergenic | 25.0% |
| !! | AATGCAAAAATCTAAAATGG+TGG | + | chr7.3:29486497-29486516 | None:intergenic | 25.0% |
| !! | ACCATTTTAGATTTTTGCAT+TGG | - | chr7.3:29486496-29486515 | MS.gene27687:intron | 25.0% |
| !! | ATGCAAAAATCTAAAATGGT+GGG | + | chr7.3:29486496-29486515 | None:intergenic | 25.0% |
| !! | ATTTTACAATAAGTGAACTG+AGG | + | chr7.3:29484122-29484141 | None:intergenic | 25.0% |
| !! | ATTTTCTTTCTACTTAGTTG+TGG | - | chr7.3:29486608-29486627 | MS.gene27687:intron | 25.0% |
| !! | CCATTTTAGATTTTTGCATT+GGG | - | chr7.3:29486497-29486516 | MS.gene27687:intron | 25.0% |
| !! | TAAGCATTGTATAGAGATAT+AGG | - | chr7.3:29486760-29486779 | MS.gene27687:intron | 25.0% |
| !! | TATTTCTGATTGTTTGGATT+TGG | - | chr7.3:29484185-29484204 | MS.gene27687:intron | 25.0% |
| !! | TCATAAACTGACTAAAGTTT+TGG | + | chr7.3:29486123-29486142 | None:intergenic | 25.0% |
| !!! | AAATAAATGCTGGTTCAAAA+CGG | - | chr7.3:29486997-29487016 | MS.gene27687:intron | 25.0% |
| !!! | AATCGATTTTTTTCACAAAG+TGG | + | chr7.3:29484571-29484590 | None:intergenic | 25.0% |
| !!! | AGACCAGTATGTTATTTTAA+TGG | + | chr7.3:29484647-29484666 | None:intergenic | 25.0% |
| !!! | AGCTTTTTTTTCTCTTTTTC+CGG | + | chr7.3:29486736-29486755 | None:intergenic | 25.0% |
| !!! | CATAACCATTGATTGATTTT+AGG | + | chr7.3:29486005-29486024 | None:intergenic | 25.0% |
| !!! | GATACGGTGAATTTATTTTT+TGG | - | chr7.3:29485671-29485690 | MS.gene27687:intron | 25.0% |
| !!! | GATTATTGTTTTTCTGAGAA+TGG | - | chr7.3:29484736-29484755 | MS.gene27687:intron | 25.0% |
| !!! | TTCAATGAAATCCACTTTTT+TGG | - | chr7.3:29485792-29485811 | MS.gene27687:intron | 25.0% |
| AAAATCATGCATATGAATCG+AGG | - | chr7.3:29485933-29485952 | MS.gene27687:intron | 30.0% | |
| AAAGAATAGAATACCTTCCT+TGG | + | chr7.3:29483791-29483810 | None:intergenic | 30.0% | |
| AAATGGGAATTGCACAAAAA+TGG | + | chr7.3:29486215-29486234 | None:intergenic | 30.0% | |
| AACAGGATAAGATAATTCTC+CGG | + | chr7.3:29485909-29485928 | None:intergenic | 30.0% | |
| AAGAAATTCACAACTCATCT+TGG | + | chr7.3:29484910-29484929 | None:intergenic | 30.0% | |
| AATCTACTTGAATACATCGT+TGG | + | chr7.3:29484848-29484867 | None:intergenic | 30.0% | |
| AATCTCACTAACCTCTTAAT+AGG | + | chr7.3:29485266-29485285 | None:intergenic | 30.0% | |
| ACAAAAAGTTAACGACATAG+GGG | + | chr7.3:29484879-29484898 | None:intergenic | 30.0% | |
| ACACAAAAAGTTAACGACAT+AGG | + | chr7.3:29484881-29484900 | None:intergenic | 30.0% | |
| AGAATAGGTTTATGCATGAT+TGG | + | chr7.3:29484355-29484374 | None:intergenic | 30.0% | |
| AGATGTGTAATGTCTTGAAT+AGG | + | chr7.3:29484998-29485017 | None:intergenic | 30.0% | |
| ATCTCACTAACCTCTTAATA+GGG | + | chr7.3:29485265-29485284 | None:intergenic | 30.0% | |
| ATGTCAAAGGAAATTGTAAC+CGG | - | chr7.3:29486714-29486733 | MS.gene27687:intron | 30.0% | |
| CACAAAAAGTTAACGACATA+GGG | + | chr7.3:29484880-29484899 | None:intergenic | 30.0% | |
| CCCAATGCAAAAATCTAAAA+TGG | + | chr7.3:29486500-29486519 | None:intergenic | 30.0% | |
| CTGAACAAAACTAAACAATG+TGG | - | chr7.3:29484156-29484175 | MS.gene27687:intron | 30.0% | |
| GAGCAGATTCATAAATTTCA+TGG | + | chr7.3:29486853-29486872 | None:intergenic | 30.0% | |
| TATCATCATATGTACTTGTG+TGG | - | chr7.3:29486909-29486928 | MS.gene27687:intron | 30.0% | |
| TATTTATAGTATGCCTAGCA+TGG | + | chr7.3:29485037-29485056 | None:intergenic | 30.0% | |
| TCAATTACAGATTGAGTTAG+TGG | + | chr7.3:29484807-29484826 | None:intergenic | 30.0% | |
| TCACGATCTTCATAATGATA+CGG | - | chr7.3:29485655-29485674 | MS.gene27687:intron | 30.0% | |
| TGAAGCATAATAAACCAAAG+TGG | + | chr7.3:29484520-29484539 | None:intergenic | 30.0% | |
| TGTTGAATCTTGCATTGTTT+GGG | - | chr7.3:29484406-29484425 | MS.gene27687:intron | 30.0% | |
| TTAGAAGATAGGTGAATGAA+GGG | - | chr7.3:29485104-29485123 | MS.gene27687:intron | 30.0% | |
| TTCACCATGTAACTGAAATT+CGG | + | chr7.3:29486941-29486960 | None:intergenic | 30.0% | |
| ! | CATTTTCACTTTATCCATCA+TGG | - | chr7.3:29486640-29486659 | MS.gene27687:intron | 30.0% |
| ! | GACTCATATTGCAAATTTTC+AGG | + | chr7.3:29485529-29485548 | None:intergenic | 30.0% |
| ! | TATGCATGATTTTCATGAAC+AGG | + | chr7.3:29485926-29485945 | None:intergenic | 30.0% |
| ! | TGCAAAAATCTAAAATGGTG+GGG | + | chr7.3:29486495-29486514 | None:intergenic | 30.0% |
| ! | TTTTTCATTTTCACTGAGCA+GGG | - | chr7.3:29486818-29486837 | MS.gene27687:intron | 30.0% |
| !! | AAGTTTTGTCACCAAAAAAG+TGG | + | chr7.3:29485806-29485825 | None:intergenic | 30.0% |
| !! | ATTGCTTTGTTTGATGTTGA+TGG | - | chr7.3:29483752-29483771 | MS.gene27687:CDS | 30.0% |
| !! | CTGTTTTATGATGATGTCAA+AGG | - | chr7.3:29486701-29486720 | MS.gene27687:intron | 30.0% |
| !! | CTTAACTTGACATTTTCCAT+TGG | - | chr7.3:29485608-29485627 | MS.gene27687:CDS | 30.0% |
| !! | GTTTTGAACCAGCATTTATT+TGG | + | chr7.3:29486998-29487017 | None:intergenic | 30.0% |
| !! | TAAACTGACTAAAGTTTTGG+AGG | + | chr7.3:29486120-29486139 | None:intergenic | 30.0% |
| !! | TTTTGGTGACAAAACTTACA+AGG | - | chr7.3:29485809-29485828 | MS.gene27687:intron | 30.0% |
| AACAACAATGTTGCCTATTG+CGG | + | chr7.3:29484081-29484100 | None:intergenic | 35.0% | |
| AATTTGCAATATGAGTCCTC+AGG | - | chr7.3:29485532-29485551 | MS.gene27687:intron | 35.0% | |
| ACAATTCTCTTGCAAAGTGA+AGG | + | chr7.3:29486150-29486169 | None:intergenic | 35.0% | |
| ACATTTATTGAGTTCCGTAG+TGG | - | chr7.3:29485353-29485372 | MS.gene27687:intron | 35.0% | |
| ACTTGGATATCCCTATTAAG+AGG | - | chr7.3:29485252-29485271 | MS.gene27687:CDS | 35.0% | |
| AGAGCTTGAAGACATTCATT+GGG | - | chr7.3:29484934-29484953 | MS.gene27687:intron | 35.0% | |
| ATAATGACACTCCATCAGTA+GGG | - | chr7.3:29483816-29483835 | MS.gene27687:intron | 35.0% | |
| ATGACCGAATTTCAGTTACA+TGG | - | chr7.3:29486934-29486953 | MS.gene27687:intron | 35.0% | |
| ATGTTGAATGTGTCACCTAT+TGG | - | chr7.3:29485377-29485396 | MS.gene27687:intron | 35.0% | |
| CAAGAAAATAACCCTACTGA+TGG | + | chr7.3:29483830-29483849 | None:intergenic | 35.0% | |
| CATTTATTGAGTTCCGTAGT+GGG | - | chr7.3:29485354-29485373 | MS.gene27687:intron | 35.0% | |
| CTGTTGAATCTTGCATTGTT+TGG | - | chr7.3:29484405-29484424 | MS.gene27687:intron | 35.0% | |
| CTTAGAAGATAGGTGAATGA+AGG | - | chr7.3:29485103-29485122 | MS.gene27687:intron | 35.0% | |
| CTTATTGAAGCCAATTTCCA+TGG | + | chr7.3:29486405-29486424 | None:intergenic | 35.0% | |
| GAGCAAAGAAGAAGAAAGTA+GGG | + | chr7.3:29484622-29484641 | None:intergenic | 35.0% | |
| GGATTTCATTGAAACCATCA+AGG | + | chr7.3:29485785-29485804 | None:intergenic | 35.0% | |
| GTAAAGATATCTGAGCAACT+TGG | - | chr7.3:29484472-29484491 | MS.gene27687:intron | 35.0% | |
| GTAACTGCAACAAGCAAATA+GGG | + | chr7.3:29484706-29484725 | None:intergenic | 35.0% | |
| GTTAGCTATAAGTTCCACTT+TGG | - | chr7.3:29484503-29484522 | MS.gene27687:intron | 35.0% | |
| GTTCATACAAGATCTACGAA+AGG | - | chr7.3:29484267-29484286 | MS.gene27687:intron | 35.0% | |
| TAGAAGATAGGTGAATGAAG+GGG | - | chr7.3:29485105-29485124 | MS.gene27687:intron | 35.0% | |
| TCAGAACATACGCTCAAAAA+TGG | - | chr7.3:29485556-29485575 | MS.gene27687:intron | 35.0% | |
| TGAGCAAAGAAGAAGAAAGT+AGG | + | chr7.3:29484623-29484642 | None:intergenic | 35.0% | |
| TGTTGAATGTGTCACCTATT+GGG | - | chr7.3:29485378-29485397 | MS.gene27687:intron | 35.0% | |
| TTTGGGTACACAGATTGTAA+CGG | - | chr7.3:29484423-29484442 | MS.gene27687:intron | 35.0% | |
| ! | AACTTGACATTTTCCATTGG+AGG | - | chr7.3:29485611-29485630 | MS.gene27687:intron | 35.0% |
| ! | ACTGCTTGATAGTATCTTCA+GGG | + | chr7.3:29487073-29487092 | None:intergenic | 35.0% |
| ! | ATGTTTTATCCCAACCTTGA+GGG | + | chr7.3:29485749-29485768 | None:intergenic | 35.0% |
| ! | TATGTTTTATCCCAACCTTG+AGG | + | chr7.3:29485750-29485769 | None:intergenic | 35.0% |
| !! | CTTCAGTGTTTTGAACATGT+AGG | - | chr7.3:29484535-29484554 | MS.gene27687:intron | 35.0% |
| !! | CTTTTTCATTTTCACTGAGC+AGG | - | chr7.3:29486817-29486836 | MS.gene27687:intron | 35.0% |
| !! | TTTTTCTGAGAATGGTCTTG+TGG | - | chr7.3:29484744-29484763 | MS.gene27687:intron | 35.0% |
| !!! | TTGTTTAGTTTTGTTCAGCG+AGG | + | chr7.3:29484154-29484173 | None:intergenic | 35.0% |
| AAAGCTTATCTGTCCTCCAA+TGG | + | chr7.3:29485627-29485646 | None:intergenic | 40.0% | |
| ACACATTCAACATCCCACTA+CGG | + | chr7.3:29485370-29485389 | None:intergenic | 40.0% | |
| ACGATCAATATGAACGCGTA+AGG | + | chr7.3:29487036-29487055 | None:intergenic | 40.0% | |
| ATTGTAACGGTTGGAGTTGT+TGG | - | chr7.3:29484436-29484455 | MS.gene27687:intron | 40.0% | |
| CAAACTCGTCTCTTTCTTCT+TGG | + | chr7.3:29485415-29485434 | None:intergenic | 40.0% | |
| CAATTTCCATGGCATTGCTA+TGG | + | chr7.3:29486394-29486413 | None:intergenic | 40.0% | |
| CAGAGCTTGAAGACATTCAT+TGG | - | chr7.3:29484933-29484952 | MS.gene27687:intron | 40.0% | |
| CATAGCAATGCCATGGAAAT+TGG | - | chr7.3:29486392-29486411 | MS.gene27687:intron | 40.0% | |
| CTCTCATGAATCAGGAAGTA+TGG | - | chr7.3:29486346-29486365 | MS.gene27687:CDS | 40.0% | |
| CTTGAATACATCGTTGGTCA+CGG | + | chr7.3:29484842-29484861 | None:intergenic | 40.0% | |
| GAGCTTGAAGACATTCATTG+GGG | - | chr7.3:29484935-29484954 | MS.gene27687:intron | 40.0% | |
| GATAATGACACTCCATCAGT+AGG | - | chr7.3:29483815-29483834 | MS.gene27687:intron | 40.0% | |
| GGTAACTGCAACAAGCAAAT+AGG | + | chr7.3:29484707-29484726 | None:intergenic | 40.0% | |
| TACTGCTTGAGATACCTTGA+TGG | - | chr7.3:29485768-29485787 | MS.gene27687:intron | 40.0% | |
| TATGAATCTGCTCGGACTAT+CGG | - | chr7.3:29486860-29486879 | MS.gene27687:intron | 40.0% | |
| TCAAACAAAGCAATCACACC+AGG | + | chr7.3:29483746-29483765 | None:intergenic | 40.0% | |
| TGTATGAACTGCAACATCTC+TGG | + | chr7.3:29484256-29484275 | None:intergenic | 40.0% | |
| TGTTGCCTACTCAATTGCTA+GGG | - | chr7.3:29484223-29484242 | MS.gene27687:intron | 40.0% | |
| TTGTAACGGTTGGAGTTGTT+GGG | - | chr7.3:29484437-29484456 | MS.gene27687:intron | 40.0% | |
| ! | AAAATCTAAAATGGTGGGGC+AGG | + | chr7.3:29486491-29486510 | None:intergenic | 40.0% |
| ! | AATTTGTTCCTCGGCGATTA+GGG | + | chr7.3:29486239-29486258 | None:intergenic | 40.0% |
| ! | CACTGCTTGATAGTATCTTC+AGG | + | chr7.3:29487074-29487093 | None:intergenic | 40.0% |
| ! | CGAGTTTGAGAAGTATGACA+AGG | - | chr7.3:29485427-29485446 | MS.gene27687:CDS | 40.0% |
| ! | GCTTCATTACATTGCTGACT+TGG | - | chr7.3:29485235-29485254 | MS.gene27687:CDS | 40.0% |
| !! | CGAGTCTCTTCTAGAATGAA+GGG | + | chr7.3:29486064-29486083 | None:intergenic | 40.0% |
| !! | GCACAAAAATGGACTGCTTA+TGG | + | chr7.3:29486204-29486223 | None:intergenic | 40.0% |
| !! | TCGAGTCTCTTCTAGAATGA+AGG | + | chr7.3:29486065-29486084 | None:intergenic | 40.0% |
| AACTAGGTCCATAGGTCTTG+GGG | + | chr7.3:29486303-29486322 | None:intergenic | 45.0% | |
| AACTCTTACAGCTCCAAGGA+AGG | - | chr7.3:29483775-29483794 | MS.gene27687:intron | 45.0% | |
| AAGCAATCACACCAGGTTTC+AGG | + | chr7.3:29483739-29483758 | None:intergenic | 45.0% | |
| AGAACTAGGTCCATAGGTCT+TGG | + | chr7.3:29486305-29486324 | None:intergenic | 45.0% | |
| AGCAATCACACCAGGTTTCA+GGG | + | chr7.3:29483738-29483757 | None:intergenic | 45.0% | |
| ATCGCCGAGGAACAAATTGA+AGG | - | chr7.3:29486241-29486260 | MS.gene27687:intron | 45.0% | |
| ATGAACGCGTAAGGTTCACA+TGG | + | chr7.3:29487027-29487046 | None:intergenic | 45.0% | |
| ATGAATCTGCTCGGACTATC+GGG | - | chr7.3:29486861-29486880 | MS.gene27687:intron | 45.0% | |
| ATGGAACTCTTACAGCTCCA+AGG | - | chr7.3:29483771-29483790 | MS.gene27687:intron | 45.0% | |
| CAGTGTACATCTCTCTTCCT+GGG | - | chr7.3:29487089-29487108 | MS.gene27687:CDS | 45.0% | |
| CATAAGCAAGGACAGCTCAT+TGG | - | chr7.3:29484769-29484788 | MS.gene27687:intron | 45.0% | |
| CTGTTGCCTACTCAATTGCT+AGG | - | chr7.3:29484222-29484241 | MS.gene27687:intron | 45.0% | |
| GAACTAGGTCCATAGGTCTT+GGG | + | chr7.3:29486304-29486323 | None:intergenic | 45.0% | |
| GAAGTATGGTCTCATGTTGC+GGG | - | chr7.3:29486360-29486379 | MS.gene27687:CDS | 45.0% | |
| GGATGAACAGCTCAAGGTAA+AGG | - | chr7.3:29484956-29484975 | MS.gene27687:intron | 45.0% | |
| GGTACACAGATTGTAACGGT+TGG | - | chr7.3:29484427-29484446 | MS.gene27687:intron | 45.0% | |
| GTTGCCTACTCAATTGCTAG+GGG | - | chr7.3:29484224-29484243 | MS.gene27687:intron | 45.0% | |
| TGCAACAAGCAAATAGGGAC+AGG | + | chr7.3:29484701-29484720 | None:intergenic | 45.0% | |
| TGGCTACAGTTTCTCCCAAT+AGG | + | chr7.3:29485395-29485414 | None:intergenic | 45.0% | |
| TGGTTAAGTGATAGGCCAAC+AGG | - | chr7.3:29485691-29485710 | MS.gene27687:intron | 45.0% | |
| TGTAACGGTTGGAGTTGTTG+GGG | - | chr7.3:29484438-29484457 | MS.gene27687:intron | 45.0% | |
| TGTGGGAACTCTCATGAATC+AGG | - | chr7.3:29486338-29486357 | MS.gene27687:intron | 45.0% | |
| TTCTCACACCTTTCGTGTGT+GGG | - | chr7.3:29486321-29486340 | MS.gene27687:intron | 45.0% | |
| TTGCCTACTCAATTGCTAGG+GGG | - | chr7.3:29484225-29484244 | MS.gene27687:intron | 45.0% | |
| TTGCGGATCGTGGAAAACAA+CGG | + | chr7.3:29484064-29484083 | None:intergenic | 45.0% | |
| ! | ACACGAAAGGTGTGAGAACT+AGG | + | chr7.3:29486319-29486338 | None:intergenic | 45.0% |
| ! | ACAGGTTTTCCCTCAAGGTT+GGG | - | chr7.3:29485737-29485756 | MS.gene27687:intron | 45.0% |
| ! | ACTCTACAGGTTTTCCCTCA+AGG | - | chr7.3:29485732-29485751 | MS.gene27687:intron | 45.0% |
| ! | CAAGATCTACGAAAGGTGTG+TGG | - | chr7.3:29484274-29484293 | MS.gene27687:intron | 45.0% |
| ! | CAATTTGTTCCTCGGCGATT+AGG | + | chr7.3:29486240-29486259 | None:intergenic | 45.0% |
| ! | CTGGCCTTCAATTTGTTCCT+CGG | + | chr7.3:29486248-29486267 | None:intergenic | 45.0% |
| ! | CTTGATAGTATCTTCAGGGC+TGG | + | chr7.3:29487069-29487088 | None:intergenic | 45.0% |
| ! | GGAAGTATGGTCTCATGTTG+CGG | - | chr7.3:29486359-29486378 | MS.gene27687:CDS | 45.0% |
| ! | TACAGGTTTTCCCTCAAGGT+TGG | - | chr7.3:29485736-29485755 | MS.gene27687:intron | 45.0% |
| ! | TCTACGAAAGGTGTGTGGTT+TGG | - | chr7.3:29484279-29484298 | MS.gene27687:intron | 45.0% |
| ! | TGTTTTCCACGATCCGCAAT+AGG | - | chr7.3:29484065-29484084 | MS.gene27687:intron | 45.0% |
| ! | TTCATTTTCACTGAGCAGGG+TGG | - | chr7.3:29486821-29486840 | MS.gene27687:intron | 45.0% |
| !!! | TTTTCTGAGACTGCCATGCT+AGG | - | chr7.3:29485021-29485040 | MS.gene27687:CDS | 45.0% |
| AACAAATTGAAGGCCAGCCG+TGG | - | chr7.3:29486251-29486270 | MS.gene27687:intron | 50.0% | |
| ACAAATTGAAGGCCAGCCGT+GGG | - | chr7.3:29486252-29486271 | MS.gene27687:intron | 50.0% | |
| ACTAGGTCCATAGGTCTTGG+GGG | + | chr7.3:29486302-29486321 | None:intergenic | 50.0% | |
| AGGACAGCTCATTGGAACTC+AGG | - | chr7.3:29484777-29484796 | MS.gene27687:intron | 50.0% | |
| ATGTTGCCTATTGCGGATCG+TGG | + | chr7.3:29484074-29484093 | None:intergenic | 50.0% | |
| ATTCTCACCCCCAAGACCTA+TGG | - | chr7.3:29486292-29486311 | MS.gene27687:intron | 50.0% | |
| CATTGGGGATGAACAGCTCA+AGG | - | chr7.3:29484950-29484969 | MS.gene27687:intron | 50.0% | |
| CCTCGGCGATTAGGGAAAAT+GGG | + | chr7.3:29486231-29486250 | None:intergenic | 50.0% | |
| GAATACATCGTTGGTCACGG+TGG | + | chr7.3:29484839-29484858 | None:intergenic | 50.0% | |
| GCAGTGTACATCTCTCTTCC+TGG | - | chr7.3:29487088-29487107 | MS.gene27687:CDS | 50.0% | |
| GCCTCTGTGCATTCATATGC+CGG | - | chr7.3:29485887-29485906 | MS.gene27687:CDS | 50.0% | |
| GGGGTGAGAATTCCACACAT+TGG | + | chr7.3:29486283-29486302 | None:intergenic | 50.0% | |
| GGTGTGAGAACTAGGTCCAT+AGG | + | chr7.3:29486311-29486330 | None:intergenic | 50.0% | |
| GTAACGGTTGGAGTTGTTGG+GGG | - | chr7.3:29484439-29484458 | MS.gene27687:intron | 50.0% | |
| GTTCTCACACCTTTCGTGTG+TGG | - | chr7.3:29486320-29486339 | MS.gene27687:intron | 50.0% | |
| TAGCCCCCTAGCAATTGAGT+AGG | + | chr7.3:29484231-29484250 | None:intergenic | 50.0% | |
| TCCGGCATATGAATGCACAG+AGG | + | chr7.3:29485891-29485910 | None:intergenic | 50.0% | |
| TCCTCGGCGATTAGGGAAAA+TGG | + | chr7.3:29486232-29486251 | None:intergenic | 50.0% | |
| TCTGAGCAACTTGGTCAGAC+AGG | - | chr7.3:29484481-29484500 | MS.gene27687:intron | 50.0% | |
| TGAGAGTTCCCACACACGAA+AGG | + | chr7.3:29486332-29486351 | None:intergenic | 50.0% | |
| ! | ATCTAAAATGGTGGGGCAGG+TGG | + | chr7.3:29486488-29486507 | None:intergenic | 50.0% |
| ! | GAGCGTATGTTCTGAACCTG+AGG | + | chr7.3:29485551-29485570 | None:intergenic | 50.0% |
| ! | GGTCTTGTGGCTCATAAGCA+AGG | - | chr7.3:29484757-29484776 | MS.gene27687:intron | 50.0% |
| ATGGTCTCATGTTGCGGGCA+CGG | - | chr7.3:29486365-29486384 | MS.gene27687:CDS | 55.0% | |
| CCACACATTGGAGTGACCCA+CGG | + | chr7.3:29486271-29486290 | None:intergenic | 55.0% | |
| CGGCTTCCATAGCAATGCCA+TGG | - | chr7.3:29486385-29486404 | MS.gene27687:CDS | 55.0% | |
| ! | CCCATTTTCCCTAATCGCCG+AGG | - | chr7.3:29486228-29486247 | MS.gene27687:intron | 55.0% |
| ACATTGGAGTGACCCACGGC+TGG | + | chr7.3:29486267-29486286 | None:intergenic | 60.0% | |
| CCGTGGGTCACTCCAATGTG+TGG | - | chr7.3:29486268-29486287 | MS.gene27687:intron | 60.0% | |
| GCTCGGACTATCGGGCACAC+AGG | - | chr7.3:29486869-29486888 | MS.gene27687:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 29483728 | 29487118 | 29483728 | ID=MS.gene27687 |
| chr7.3 | mRNA | 29483728 | 29487118 | 29483728 | ID=MS.gene27687.t1;Parent=MS.gene27687 |
| chr7.3 | exon | 29487050 | 29487118 | 29487050 | ID=MS.gene27687.t1.exon1;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29487050 | 29487118 | 29487050 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29486558 | 29486602 | 29486558 | ID=MS.gene27687.t1.exon2;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29486558 | 29486602 | 29486558 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29486344 | 29486410 | 29486344 | ID=MS.gene27687.t1.exon3;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29486344 | 29486410 | 29486344 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29486048 | 29486124 | 29486048 | ID=MS.gene27687.t1.exon4;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29486048 | 29486124 | 29486048 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29485875 | 29485910 | 29485875 | ID=MS.gene27687.t1.exon5;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29485875 | 29485910 | 29485875 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29485573 | 29485628 | 29485573 | ID=MS.gene27687.t1.exon6;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29485573 | 29485628 | 29485573 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29485398 | 29485497 | 29485398 | ID=MS.gene27687.t1.exon7;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29485398 | 29485497 | 29485398 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29485197 | 29485292 | 29485197 | ID=MS.gene27687.t1.exon8;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29485197 | 29485292 | 29485197 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29485016 | 29485105 | 29485016 | ID=MS.gene27687.t1.exon9;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29485016 | 29485105 | 29485016 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29483956 | 29484007 | 29483956 | ID=MS.gene27687.t1.exon10;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29483956 | 29484007 | 29483956 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| chr7.3 | exon | 29483728 | 29483783 | 29483728 | ID=MS.gene27687.t1.exon11;Parent=MS.gene27687.t1 |
| chr7.3 | CDS | 29483728 | 29483783 | 29483728 | ID=cds.MS.gene27687.t1;Parent=MS.gene27687.t1 |
| Gene Sequence |
| Protein sequence |
