AlfalfaGEDB | MS.gene052202

M. sativa cultivar XinJiangDaYe / MS.gene052202

KEGG: K02892
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00276.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052202.t1	ACJ86149.1	95.7	208	9	0	1	208	1	208	2.50E-87	331.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052202.t1	P10140	49.0	51	26	0	39	89	33	83	1.4e-06	54.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052202.t1	B7FN16	95.7	208	9	0	1	208	1	208	1.8e-87	331.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051063	MS.gene052202	0.808457	3.07E-50	-1.69E-46
MS.gene051903	MS.gene052202	0.813047	3.12E-51	-1.69E-46
MS.gene052202	MS.gene056432	0.812787	3.56E-51	-1.69E-46
MS.gene052202	MS.gene05809	0.803421	3.51E-49	-1.69E-46
MS.gene052202	MS.gene058906	0.821776	3.37E-53	-1.69E-46
MS.gene052202	MS.gene06001	0.83418	3.48E-56	-1.69E-46
MS.gene052202	MS.gene061145	0.804405	2.19E-49	-1.69E-46
MS.gene052202	MS.gene06172	0.805079	1.59E-49	-1.69E-46
MS.gene052202	MS.gene064071	0.810989	8.76E-51	-1.69E-46
MS.gene052202	MS.gene064072	0.810774	9.75E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052202.t1	MTR_3g087190	97.596	208	5	0	1	208	1	208	1.44e-149	414
MS.gene052202.t1	MTR_3g079680	66.026	156	21	3	16	170	27	151	9.14e-59	182
MS.gene052202.t1	MTR_8g090225	56.790	81	33	2	20	99	13	92	8.58e-23	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052202.t1	AT4G39880	72.727	132	34	1	1	132	1	130	1.69e-61	190

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Find 68 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTATTACAGGGGA+GGG	0.587136	3.2:-74442701	MS.gene052202:CDS
AAAGGTTCGAACATTGAACA+TGG	0.645998	3.2:-74442958	MS.gene052202:CDS
AACACGCTTGATTTCAATCT+TGG	0.311058	3.2:+74443010	None:intergenic
AAGCGCCGGGGAAGAGTCAC+TGG	0.439330	3.2:-74442761	MS.gene052202:CDS
AATCTTGGAAGCTGATGGAA+TGG	0.521693	3.2:+74443025	None:intergenic
ACCAGTCCTCATGTTACTCC+AGG	0.456222	3.2:+74442545	None:intergenic
AGATTCGGGTTAATCAAAAG+CGG	0.681647	3.2:+74442858	None:intergenic
AGCCGCAAAATGGGTATTAC+AGG	0.309367	3.2:-74442707	MS.gene052202:CDS
AGGGGAGGGTTTGATCGTTC+TGG	0.399564	3.2:-74442687	MS.gene052202:CDS
AGTATTGTTGAGGAAGCGCC+GGG	0.487009	3.2:-74442774	MS.gene052202:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCAAAACCTGATTACAAAA+AGG	-	chr3.2:74442751-74442770	MS.gene052202:CDS	30.0%
AAAGGTTCGAACATTGAACA+TGG	-	chr3.2:74442694-74442713	MS.gene052202:CDS	35.0%
AACACGCTTGATTTCAATCT+TGG	+	chr3.2:74442645-74442664	None:intergenic	35.0%
ATTTCAATCTTGGAAGCTGA+TGG	+	chr3.2:74442635-74442654	None:intergenic	35.0%
GAGTTTGAATAAACAGGCTA+TGG	-	chr3.2:74442850-74442869	MS.gene052202:CDS	35.0%
TCTCGAATCGGAAAAAGATT+CGG	+	chr3.2:74442812-74442831	None:intergenic	35.0%
TTTGAATAAACAGGCTATGG+CGG	-	chr3.2:74442853-74442872	MS.gene052202:CDS	35.0%
AAAATGGGTATTACAGGGGA+GGG	-	chr3.2:74442951-74442970	MS.gene052202:CDS	40.0%
AATCTTGGAAGCTGATGGAA+TGG	+	chr3.2:74442630-74442649	None:intergenic	40.0%
ATGAGAATAAGAACACCCGT+GGG	-	chr3.2:74442918-74442937	MS.gene052202:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	74442524	74443150	74442524	ID=MS.gene052202
chr3.2	mRNA	74442524	74443150	74442524	ID=MS.gene052202.t1;Parent=MS.gene052202
chr3.2	exon	74442524	74443150	74442524	ID=MS.gene052202.t1.exon1;Parent=MS.gene052202.t1
chr3.2	CDS	74442524	74443150	74442524	ID=cds.MS.gene052202.t1;Parent=MS.gene052202.t1

Gene Sequence

>MS.gene052202

ATGGGAAGCAGACTAGGAAGAAGAGTAGTGTACTTCGCAAACCTACCAATCAAGCTTCTCCTGCCTACAACCTTCACCGACATACATGAAATCGCTCTCAAAACCATTCCATCAGCTTCCAAGATTGAAATCAAGCGTGTTCTGGAATCCCTCTACGGATTCGATGTCGAAAAGGTTCGAACATTGAACATGGACGGAAAGAAGAAGAAACGTGGCGGAATCGTGATTGCAAAACCTGATTACAAAAAGGCTTTTGTAACGTTAAAAACCCCGCTTTTGATTAACCCGAATCTTTTTCCGATTCGAGAGATTGAAGAGGATAAGAAGAGTTTGAATAAACAGGCTATGGCGGCTAGTATTGTTGAGGAAGCGCCGGGGAAGAGTCACTGGCTTGATGAGAATAAGAACACCCGTGGGTTTAAGCCGCAAAATGGGTATTACAGGGGAGGGTTTGATCGTTCTGGTTCGAATCTGTTTGCGAGTTCTGGTTCGAATCAGGGACGGTTTGACCGTTCTGGTTCGAACCGGGGAAGGTTTGAACGCCCTGGTTCGAACCGGGCTGATGGTTCTGCTGCAAAGTTTCCCTGGAGTAACATGAGGACTGGTAGGAGTAATGCTACTAGGTAG

Protein sequence

>MS.gene052202.t1

MGSRLGRRVVYFANLPIKLLLPTTFTDIHEIALKTIPSASKIEIKRVLESLYGFDVEKVRTLNMDGKKKKRGGIVIAKPDYKKAFVTLKTPLLINPNLFPIREIEEDKKSLNKQAMAASIVEEAPGKSHWLDENKNTRGFKPQNGYYRGGFDRSGSNLFASSGSNQGRFDRSGSNRGRFERPGSNRADGSAAKFPWSNMRTGRSNATR