Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28939.t1 | XP_013456581.1 | 81.8 | 390 | 65 | 1 | 1 | 384 | 1 | 390 | 4.60E-166 | 594.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28939.t1 | O22265 | 69.9 | 299 | 81 | 4 | 70 | 367 | 83 | 373 | 4.3e-96 | 353.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28939.t1 | A0A072ULN5 | 81.8 | 390 | 65 | 1 | 1 | 384 | 1 | 390 | 3.3e-166 | 594.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene28939 | 0.816385 | 5.68E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene28939 | 0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene28939 | 0.818287 | 2.12E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene28939 | 0.806247 | 9.02E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene28939 | 0.805681 | 1.19E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene28939 | 0.853097 | 2.99E-61 | -1.69E-46 |
| MS.gene050812 | MS.gene28939 | 0.802782 | 4.76E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene28939 | 0.817016 | 4.10E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene28939 | 0.872426 | 3.21E-67 | -1.69E-46 |
| MS.gene052310 | MS.gene28939 | 0.820708 | 5.95E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene28939 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene28939 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene28939 | 0.804481 | 2.12E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene28939 | 0.827203 | 1.78E-54 | -1.69E-46 |
| MS.gene05413 | MS.gene28939 | 0.810631 | 1.05E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene28939 | 0.809447 | 1.88E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene28939 | 0.806415 | 8.32E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene28939 | 0.808849 | 2.53E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene28939 | 0.826288 | 2.94E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene28939 | 0.816851 | 4.47E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene28939 | 0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene055390 | MS.gene28939 | 0.804898 | 1.73E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene28939 | 0.814669 | 1.37E-51 | -1.69E-46 |
| MS.gene055564 | MS.gene28939 | 0.806514 | 7.93E-50 | -1.69E-46 |
| MS.gene055712 | MS.gene28939 | 0.806001 | 1.02E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene28939 | 0.852087 | 5.81E-61 | -1.69E-46 |
| MS.gene056723 | MS.gene28939 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene28939 | 0.83955 | 1.48E-57 | -1.69E-46 |
| MS.gene057124 | MS.gene28939 | 0.805576 | 1.25E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene28939 | 0.803439 | 3.48E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene28939 | 0.813635 | 2.32E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene28939 | 0.816064 | 6.70E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene28939 | 0.825803 | 3.84E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene28939 | 0.827691 | 1.36E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene28939 | 0.836029 | 1.19E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene28939 | 0.813816 | 2.11E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene28939 | 0.807219 | 5.62E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene28939 | 0.814212 | 1.73E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene28939 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene28939 | 0.809523 | 1.81E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene28939 | 0.813109 | 3.02E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene28939 | 0.830067 | 3.62E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28939.t1 | MTR_4g075710 | 93.333 | 390 | 20 | 2 | 1 | 384 | 1 | 390 | 0.0 | 721 |
| MS.gene28939.t1 | MTR_3g009280 | 39.316 | 117 | 68 | 2 | 110 | 226 | 218 | 331 | 5.32e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28939.t1 | AT2G47450 | 68.562 | 299 | 85 | 4 | 70 | 367 | 83 | 373 | 1.47e-144 | 418 |
Find 144 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCATCTTCAATGGTTT+TGG | 0.110155 | 4.4:+34538999 | None:intergenic |
| AGGTGAGAATTTGGAGTATT+TGG | 0.159160 | 4.4:-34538365 | MS.gene28939:CDS |
| CCACGATCGTCGCTGATTTC+CGG | 0.187668 | 4.4:+34538550 | None:intergenic |
| GAGAGGGAAAGGTGAGAATT+TGG | 0.200609 | 4.4:-34538374 | MS.gene28939:CDS |
| GAGAAATTCAAATGGGAGTT+TGG | 0.224530 | 4.4:+34539119 | None:intergenic |
| CAATGTCTTCCAGGAAATAT+TGG | 0.255855 | 4.4:-34537421 | MS.gene28939:CDS |
| ATTATCGCGGTGGTCTAAAT+TGG | 0.275461 | 4.4:+34538657 | None:intergenic |
| ACTTTGTTTCTAACCCTCTT+AGG | 0.278082 | 4.4:+34537519 | None:intergenic |
| GAGGTTTGTGGCGGAGGATT+TGG | 0.282241 | 4.4:-34538302 | MS.gene28939:CDS |
| AAGTGCTAATGAGTGGATTA+AGG | 0.294879 | 4.4:-34538326 | MS.gene28939:CDS |
| GGCGGTGACGGTTGCGAGTT+TGG | 0.295717 | 4.4:+34539059 | None:intergenic |
| TGCTGAAGTAGAGGAGATAT+TGG | 0.300314 | 4.4:-34538401 | MS.gene28939:CDS |
| GATAGAACCTCTTGATTTGC+CGG | 0.307693 | 4.4:+34537595 | None:intergenic |
| AATTGCATTGGATTCCCTTT+TGG | 0.314674 | 4.4:+34538484 | None:intergenic |
| GCTCAACCTGGTAATGATAA+TGG | 0.316615 | 4.4:-34538097 | MS.gene28939:CDS |
| CTCAACCTGGTAATGATAAT+GGG | 0.336135 | 4.4:-34538096 | MS.gene28939:CDS |
| TTTGGGAGATAGAGAGTGTT+TGG | 0.341488 | 4.4:+34539137 | None:intergenic |
| ATTTGGAGTATTTGGTGAAA+TGG | 0.345848 | 4.4:-34538357 | MS.gene28939:CDS |
| TGGGGTTAGAAGGTGTGGTT+AGG | 0.347029 | 4.4:-34538450 | MS.gene28939:CDS |
| TAAGGGGAGGTTTGTGGCGG+AGG | 0.350973 | 4.4:-34538308 | MS.gene28939:CDS |
| TTTGGTGAAATGGGTTGATT+TGG | 0.363216 | 4.4:-34538194 | MS.gene28939:CDS |
| AGAAATTCAAATGGGAGTTT+GGG | 0.371760 | 4.4:+34539120 | None:intergenic |
| TTGGGTTTGAAGTGAGAAAT+TGG | 0.374373 | 4.4:+34539156 | None:intergenic |
| GGTCGGAGAGTTGGTGATGA+TGG | 0.376518 | 4.4:-34538229 | MS.gene28939:CDS |
| GTCTAAATTGGCGCCAGCTT+CGG | 0.383155 | 4.4:+34538669 | None:intergenic |
| AAGCCTCAACCAATATTTCC+TGG | 0.385007 | 4.4:+34537412 | None:intergenic |
| TTATTAAAAGCGACGCCAAA+AGG | 0.386523 | 4.4:-34538499 | MS.gene28939:CDS |
| TCGGAATCAACATTCTCTTC+AGG | 0.387569 | 4.4:+34538154 | None:intergenic |
| TGGTTTGTTCTTGTTGTTGT+TGG | 0.391306 | 4.4:+34539025 | None:intergenic |
| CTTCTATTTGTCGCTGGCCT+CGG | 0.392008 | 4.4:-34538718 | MS.gene28939:CDS |
| TTGGGAGATAGAGAGTGTTT+GGG | 0.393943 | 4.4:+34539138 | None:intergenic |
| AACTGGAGATAAGCATATAA+AGG | 0.397270 | 4.4:+34537456 | None:intergenic |
| GTGGATTAAGGGGAGGTTTG+TGG | 0.404919 | 4.4:-34538314 | MS.gene28939:CDS |
| CTTGGAGCTTGGTGCTGATC+CGG | 0.424497 | 4.4:-34538569 | MS.gene28939:CDS |
| ATGCAATTCGGAAGAAGAAT+GGG | 0.427227 | 4.4:-34538469 | MS.gene28939:CDS |
| CCACCAGGGAGTTTCGTATT+CGG | 0.429202 | 4.4:+34538840 | None:intergenic |
| GTAGGATTCTTCATCTTCAA+TGG | 0.429799 | 4.4:+34538993 | None:intergenic |
| CGCGGTAATCGTCGGCTTCG+AGG | 0.434883 | 4.4:+34538776 | None:intergenic |
| TGTTGATTCCGAGCTTGTTA+AGG | 0.439022 | 4.4:-34538143 | MS.gene28939:CDS |
| GGAAGAAGAATGGGGTTAGA+AGG | 0.440882 | 4.4:-34538460 | MS.gene28939:CDS |
| AAGACGGCCATGAACCTTCA+TGG | 0.441985 | 4.4:-34538897 | MS.gene28939:CDS |
| TTGCGAGTTTGGCGGGTTTG+TGG | 0.442493 | 4.4:+34539070 | None:intergenic |
| TACTCCAGGTCTTACGTATC+CGG | 0.445701 | 4.4:+34538603 | None:intergenic |
| TTCTACGGTTGGTTTGAGTC+AGG | 0.446921 | 4.4:-34538071 | MS.gene28939:CDS |
| CGGGTACCCATGAAGGTTCA+TGG | 0.447529 | 4.4:+34538890 | None:intergenic |
| AGTGCTAATGAGTGGATTAA+GGG | 0.448382 | 4.4:-34538325 | MS.gene28939:CDS |
| AGGAGATATTGGAGAAGAGA+GGG | 0.448945 | 4.4:-34538390 | MS.gene28939:CDS |
| TGAGTACGCGGTGGCGGAAG+CGG | 0.449041 | 4.4:-34538257 | MS.gene28939:CDS |
| GTGACGGTTGCGAGTTTGGC+GGG | 0.450475 | 4.4:+34539063 | None:intergenic |
| TTGGTGAGGGATTACGAGGC+GGG | 0.454140 | 4.4:-34538283 | MS.gene28939:CDS |
| TGGAGTAGCAAAACTACTCT+TGG | 0.460793 | 4.4:-34538587 | MS.gene28939:CDS |
| AGTGAGAAATTGGTTTGGTA+AGG | 0.461043 | 4.4:+34539166 | None:intergenic |
| ATTCTTCTTCCGAATTGCAT+TGG | 0.463145 | 4.4:+34538472 | None:intergenic |
| GAGGAGATATTGGAGAAGAG+AGG | 0.466614 | 4.4:-34538391 | MS.gene28939:CDS |
| GGGGCTTGAGTACGCGGTGG+CGG | 0.468106 | 4.4:-34538263 | MS.gene28939:CDS |
| GGAGAGTGAGAGATTGGTGG+TGG | 0.472053 | 4.4:+34539094 | None:intergenic |
| TGTACATGCAAGAGCCTAAG+AGG | 0.472365 | 4.4:-34537533 | MS.gene28939:CDS |
| GGGGTTAGAAGGTGTGGTTA+GGG | 0.479574 | 4.4:-34538449 | MS.gene28939:CDS |
| TGTGGCGGAGAGTGAGAGAT+TGG | 0.485311 | 4.4:+34539088 | None:intergenic |
| TGGCGGAAGCGGTGGTTGGT+CGG | 0.486825 | 4.4:-34538246 | MS.gene28939:CDS |
| TCCGCGCTGCACATGGCAGC+CGG | 0.488283 | 4.4:-34538622 | MS.gene28939:CDS |
| TGGTCTATCCGCGCTGCACA+TGG | 0.489885 | 4.4:-34538629 | MS.gene28939:CDS |
| AAAGGGAATCCAATGCAATT+CGG | 0.491556 | 4.4:-34538481 | MS.gene28939:CDS |
| CTTCCAGGAAATATTGGTTG+AGG | 0.491772 | 4.4:-34537415 | MS.gene28939:CDS |
| ACGGTTGGTTTGAGTCAGGA+TGG | 0.495715 | 4.4:-34538067 | MS.gene28939:CDS |
| GATAATGGGGTTTCTACGGT+TGG | 0.503888 | 4.4:-34538082 | MS.gene28939:CDS |
| AATGCAATTCGGAAGAAGAA+TGG | 0.504009 | 4.4:-34538470 | MS.gene28939:CDS |
| TAATGATAATGGGGTTTCTA+CGG | 0.516540 | 4.4:-34538086 | MS.gene28939:CDS |
| GGTAAGGAACAAAGCTTCCA+TGG | 0.516721 | 4.4:+34539182 | None:intergenic |
| GCGGTGGCGGAAGCGGTGGT+TGG | 0.517833 | 4.4:-34538250 | MS.gene28939:CDS |
| GTCGGAGAGTTGGTGATGAT+GGG | 0.520176 | 4.4:-34538228 | MS.gene28939:CDS |
| GCGGTGGTTGGTCGGAGAGT+TGG | 0.522498 | 4.4:-34538238 | MS.gene28939:CDS |
| TGGTGGGAGAGAAATTCAAA+TGG | 0.524429 | 4.4:+34539111 | None:intergenic |
| TATTAAAAGCGACGCCAAAA+GGG | 0.524854 | 4.4:-34538498 | MS.gene28939:CDS |
| ATCAAACACCTTAACAAGCT+CGG | 0.526654 | 4.4:+34538135 | None:intergenic |
| GTTAAGCTCTTAGCCGAAGC+TGG | 0.530113 | 4.4:-34538682 | MS.gene28939:CDS |
| TTCTCTTCAGGCTCCCAAGT+GGG | 0.530836 | 4.4:+34538166 | None:intergenic |
| AAGAATGGGGTTAGAAGGTG+TGG | 0.532797 | 4.4:-34538455 | MS.gene28939:CDS |
| ATATTGGAGAAGAGAGGGAA+AGG | 0.535167 | 4.4:-34538385 | MS.gene28939:CDS |
| CGAGTTTGGCGGGTTTGTGG+CGG | 0.535508 | 4.4:+34539073 | None:intergenic |
| TTTGAAGTGAGAAATTGGTT+TGG | 0.535825 | 4.4:+34539161 | None:intergenic |
| AATCATCGGAAGCAAAGCCT+TGG | 0.537362 | 4.4:-34538956 | MS.gene28939:CDS |
| AAGTCAGCGGGTACCCATGA+AGG | 0.542219 | 4.4:+34538883 | None:intergenic |
| TGTGGCGGAGGATTTGGTGA+GGG | 0.548276 | 4.4:-34538296 | MS.gene28939:CDS |
| ACAGCACTTCTATTTGTCGC+TGG | 0.549412 | 4.4:-34538724 | MS.gene28939:CDS |
| GGTGGGAGAGAAATTCAAAT+GGG | 0.551169 | 4.4:+34539112 | None:intergenic |
| CGATCGTGGAAGAACAGCAT+TGG | 0.551222 | 4.4:-34538536 | MS.gene28939:CDS |
| GGTGACGGTTGCGAGTTTGG+CGG | 0.551567 | 4.4:+34539062 | None:intergenic |
| AGACGGCCATGAACCTTCAT+GGG | 0.552807 | 4.4:-34538896 | MS.gene28939:CDS |
| GAGAGTGAGAGATTGGTGGT+GGG | 0.557307 | 4.4:+34539095 | None:intergenic |
| GCAAAACTACTCTTGGAGCT+TGG | 0.557807 | 4.4:-34538580 | MS.gene28939:CDS |
| CATGCCGGTGGAATCTTCCA+AGG | 0.558306 | 4.4:+34538939 | None:intergenic |
| TTGATTTGGATGAACCCACT+TGG | 0.560448 | 4.4:-34538180 | MS.gene28939:CDS |
| TAGAAGTGCTGTTCTGCCAT+CGG | 0.568584 | 4.4:+34538735 | None:intergenic |
| GAAACCCCATTATCATTACC+AGG | 0.569354 | 4.4:+34538091 | None:intergenic |
| TAACGCATGGCTCTGAGCCG+AGG | 0.571678 | 4.4:+34538701 | None:intergenic |
| AGTAATAAACAAGCTCAACC+TGG | 0.574111 | 4.4:-34538109 | MS.gene28939:CDS |
| CCGGAAATCAGCGACGATCG+TGG | 0.576549 | 4.4:-34538550 | MS.gene28939:CDS |
| TATTTGGTGAAATGGAAAGA+TGG | 0.577745 | 4.4:-34538349 | MS.gene28939:CDS |
| TGATTTGGATGAACCCACTT+GGG | 0.578666 | 4.4:-34538179 | MS.gene28939:CDS |
| CGGTTGGTTTGAGTCAGGAT+GGG | 0.578683 | 4.4:-34538066 | MS.gene28939:CDS |
| ATTTACGTCGCGGTAATCGT+CGG | 0.578793 | 4.4:+34538768 | None:intergenic |
| TTGTGGCGGAGGATTTGGTG+AGG | 0.581295 | 4.4:-34538297 | MS.gene28939:CDS |
| CGAGGCGGGGCTTGAGTACG+CGG | 0.582199 | 4.4:-34538269 | MS.gene28939:CDS |
| GCATGGAGTATCTCATCGAA+TGG | 0.582914 | 4.4:-34538921 | MS.gene28939:CDS |
| GATTAAGGGGAGGTTTGTGG+CGG | 0.586684 | 4.4:-34538311 | MS.gene28939:CDS |
| TCGCCGAATACGAAACTCCC+TGG | 0.587405 | 4.4:-34538843 | MS.gene28939:CDS |
| GTACGCGGTGGCGGAAGCGG+TGG | 0.589776 | 4.4:-34538254 | MS.gene28939:CDS |
| TTTCTAGCGGCGGTCCACCA+GGG | 0.598996 | 4.4:+34538826 | None:intergenic |
| GGCGGAGAGTGAGAGATTGG+TGG | 0.601134 | 4.4:+34539091 | None:intergenic |
| AACAGCATTGGATTTAGCGA+GGG | 0.605337 | 4.4:-34538524 | MS.gene28939:CDS |
| TTAATGAACACATACGAGGC+CGG | 0.605801 | 4.4:-34537614 | MS.gene28939:CDS |
| TATCTCATCGAATGGAAAGA+CGG | 0.606908 | 4.4:-34538913 | MS.gene28939:CDS |
| GTGCTAATGAGTGGATTAAG+GGG | 0.614109 | 4.4:-34538324 | MS.gene28939:CDS |
| GTTTGAATATGCTGAAGTAG+AGG | 0.616099 | 4.4:-34538410 | MS.gene28939:CDS |
| TTCGATGAGATACTCCATGC+CGG | 0.616257 | 4.4:+34538924 | None:intergenic |
| AAAGCCTTGGAAGATTCCAC+CGG | 0.616621 | 4.4:-34538943 | MS.gene28939:CDS |
| GAACAGCATTGGATTTAGCG+AGG | 0.617852 | 4.4:-34538525 | MS.gene28939:CDS |
| TTAGACCACCGCGATAATAG+CGG | 0.624948 | 4.4:-34538652 | MS.gene28939:CDS |
| CTTGGAAGATTCCACCGGCA+TGG | 0.625931 | 4.4:-34538938 | MS.gene28939:CDS |
| TACGAGGCCGGCAAATCAAG+AGG | 0.629757 | 4.4:-34537602 | MS.gene28939:CDS |
| GTACATGCAAGAGCCTAAGA+GGG | 0.636144 | 4.4:-34537532 | MS.gene28939:CDS |
| GGATTTGGTGAGGGATTACG+AGG | 0.637487 | 4.4:-34538287 | MS.gene28939:CDS |
| TCAACCTGGTAATGATAATG+GGG | 0.640024 | 4.4:-34538095 | MS.gene28939:CDS |
| CTAATGAGTGGATTAAGGGG+AGG | 0.641319 | 4.4:-34538321 | MS.gene28939:CDS |
| ATTGAAGATGAAGAATCCTA+CGG | 0.646438 | 4.4:-34538991 | MS.gene28939:CDS |
| TCGGCTAAGAGCTTAACGCA+TGG | 0.647939 | 4.4:+34538688 | None:intergenic |
| GCAGCCGGATACGTAAGACC+TGG | 0.652551 | 4.4:-34538607 | MS.gene28939:CDS |
| GAATGCAGTGAATAATGGTG+AGG | 0.669994 | 4.4:-34537493 | MS.gene28939:CDS |
| TGGTGAGGGATTACGAGGCG+GGG | 0.670808 | 4.4:-34538282 | MS.gene28939:CDS |
| GACCACCGCGATAATAGCGG+TGG | 0.675004 | 4.4:-34538649 | MS.gene28939:CDS |
| AAGATGGAAGTGCTAATGAG+TGG | 0.675098 | 4.4:-34538333 | MS.gene28939:CDS |
| GTAAATGCAGTAGACTCCGA+TGG | 0.676847 | 4.4:-34538751 | MS.gene28939:CDS |
| GATGAGATACTCCATGCCGG+TGG | 0.682127 | 4.4:+34538927 | None:intergenic |
| ATTCTCTTCAGGCTCCCAAG+TGG | 0.682623 | 4.4:+34538165 | None:intergenic |
| TTTGGTGAGGGATTACGAGG+CGG | 0.690840 | 4.4:-34538284 | MS.gene28939:CDS |
| TGCAATTCGGAAGAAGAATG+GGG | 0.693387 | 4.4:-34538468 | MS.gene28939:CDS |
| GACCACCGCTATTATCGCGG+TGG | 0.697007 | 4.4:+34538647 | None:intergenic |
| TCCGGCTGCCATGTGCAGCG+CGG | 0.698115 | 4.4:+34538621 | None:intergenic |
| GGCGGGGCTTGAGTACGCGG+TGG | 0.703942 | 4.4:-34538266 | MS.gene28939:CDS |
| CCGAATACGAAACTCCCTGG+TGG | 0.716377 | 4.4:-34538840 | MS.gene28939:CDS |
| AGTCTACTGCATTTACGTCG+CGG | 0.730977 | 4.4:+34538758 | None:intergenic |
| ATAGACCACCGCTATTATCG+CGG | 0.736604 | 4.4:+34538644 | None:intergenic |
| TAGGTTAATGAACACATACG+AGG | 0.738064 | 4.4:-34537618 | MS.gene28939:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACCTATAAGCAAATAA+GGG | + | chr4.4:34538961-34538980 | None:intergenic | 20.0% |
| ! | AGAAGGAGAAAAATTTGTAA+TGG | + | chr4.4:34538597-34538616 | None:intergenic | 25.0% |
| ! | CATTAACCTATAAGCAAATA+AGG | + | chr4.4:34538962-34538981 | None:intergenic | 25.0% |
| ! | TTAACCTATAAGCAAATAAG+GGG | + | chr4.4:34538960-34538979 | None:intergenic | 25.0% |
| !! | AAATTGTAACTTGCAAAAGA+AGG | + | chr4.4:34538614-34538633 | None:intergenic | 25.0% |
| !!! | CATTGTTTTTGTGATAAAAC+TGG | + | chr4.4:34539154-34539173 | None:intergenic | 25.0% |
| AAATCAAGGAAATTGCTATC+TGG | - | chr4.4:34538933-34538952 | MS.gene28939:CDS | 30.0% | |
| AACTGGAGATAAGCATATAA+AGG | + | chr4.4:34539137-34539156 | None:intergenic | 30.0% | |
| AGAAATTCAAATGGGAGTTT+GGG | + | chr4.4:34537473-34537492 | None:intergenic | 30.0% | |
| ATTGAAGATGAAGAATCCTA+CGG | - | chr4.4:34537599-34537618 | MS.gene28939:CDS | 30.0% | |
| TAACCTATAAGCAAATAAGG+GGG | + | chr4.4:34538959-34538978 | None:intergenic | 30.0% | |
| ! | ATTTGGAGTATTTGGTGAAA+TGG | - | chr4.4:34538233-34538252 | MS.gene28939:CDS | 30.0% |
| ! | TATTTGGTGAAATGGAAAGA+TGG | - | chr4.4:34538241-34538260 | MS.gene28939:CDS | 30.0% |
| ! | TCTTCATCTTCAATGGTTTT+GGG | + | chr4.4:34537593-34537612 | None:intergenic | 30.0% |
| ! | TTCTTCATCTTCAATGGTTT+TGG | + | chr4.4:34537594-34537613 | None:intergenic | 30.0% |
| ! | TTTGAAGTGAGAAATTGGTT+TGG | + | chr4.4:34537432-34537451 | None:intergenic | 30.0% |
| !! | GTTTTGAATGCAGTGAATAA+TGG | - | chr4.4:34539092-34539111 | MS.gene28939:CDS | 30.0% |
| !! | TAATGATAATGGGGTTTCTA+CGG | - | chr4.4:34538504-34538523 | MS.gene28939:CDS | 30.0% |
| !!! | AGTATGAGTTTTTGGTGAAA+TGG | - | chr4.4:34538386-34538405 | MS.gene28939:CDS | 30.0% |
| !!! | GTATGAGTTTTTGGTGAAAT+GGG | - | chr4.4:34538387-34538406 | MS.gene28939:CDS | 30.0% |
| AAAGGGAATCCAATGCAATT+CGG | - | chr4.4:34538109-34538128 | MS.gene28939:CDS | 35.0% | |
| AATGCAATTCGGAAGAAGAA+TGG | - | chr4.4:34538120-34538139 | MS.gene28939:CDS | 35.0% | |
| AGTAATAAACAAGCTCAACC+TGG | - | chr4.4:34538481-34538500 | MS.gene28939:CDS | 35.0% | |
| ATCAAACACCTTAACAAGCT+CGG | + | chr4.4:34538458-34538477 | None:intergenic | 35.0% | |
| ATCCGTTATAAACTAGTCGT+TGG | + | chr4.4:34538757-34538776 | None:intergenic | 35.0% | |
| ATGCAATTCGGAAGAAGAAT+GGG | - | chr4.4:34538121-34538140 | MS.gene28939:CDS | 35.0% | |
| ATTCTTCTTCCGAATTGCAT+TGG | + | chr4.4:34538121-34538140 | None:intergenic | 35.0% | |
| CAATGTCTTCCAGGAAATAT+TGG | - | chr4.4:34539169-34539188 | MS.gene28939:CDS | 35.0% | |
| CTTGATTTCTGACGTAACTA+CGG | + | chr4.4:34538921-34538940 | None:intergenic | 35.0% | |
| GACGATTAGACTCTATTTGA+CGG | - | chr4.4:34538730-34538749 | MS.gene28939:CDS | 35.0% | |
| GAGAAATTCAAATGGGAGTT+TGG | + | chr4.4:34537474-34537493 | None:intergenic | 35.0% | |
| GGCGAAGTCAAAAAAATCAT+CGG | - | chr4.4:34537620-34537639 | MS.gene28939:intron | 35.0% | |
| GTAGGATTCTTCATCTTCAA+TGG | + | chr4.4:34537600-34537619 | None:intergenic | 35.0% | |
| GTTTGAATATGCTGAAGTAG+AGG | - | chr4.4:34538180-34538199 | MS.gene28939:CDS | 35.0% | |
| TAGGTTAATGAACACATACG+AGG | - | chr4.4:34538972-34538991 | MS.gene28939:CDS | 35.0% | |
| TATCTCATCGAATGGAAAGA+CGG | - | chr4.4:34537677-34537696 | MS.gene28939:intron | 35.0% | |
| TATTAAAAGCGACGCCAAAA+GGG | - | chr4.4:34538092-34538111 | MS.gene28939:CDS | 35.0% | |
| TCACAAAAACAATGTCTTCC+AGG | - | chr4.4:34539160-34539179 | MS.gene28939:CDS | 35.0% | |
| TTATTAAAAGCGACGCCAAA+AGG | - | chr4.4:34538091-34538110 | MS.gene28939:CDS | 35.0% | |
| ! | AATTGCATTGGATTCCCTTT+TGG | + | chr4.4:34538109-34538128 | None:intergenic | 35.0% |
| ! | AGGTGAGAATTTGGAGTATT+TGG | - | chr4.4:34538225-34538244 | MS.gene28939:CDS | 35.0% |
| ! | ATTTTCGTCGGATTTTCTAG+CGG | + | chr4.4:34537780-34537799 | None:intergenic | 35.0% |
| ! | CTCAACCTGGTAATGATAAT+GGG | - | chr4.4:34538494-34538513 | MS.gene28939:CDS | 35.0% |
| ! | TCAACCTGGTAATGATAATG+GGG | - | chr4.4:34538495-34538514 | MS.gene28939:CDS | 35.0% |
| ! | TTGGGTTTGAAGTGAGAAAT+TGG | + | chr4.4:34537437-34537456 | None:intergenic | 35.0% |
| !! | AAGTGCTAATGAGTGGATTA+AGG | - | chr4.4:34538264-34538283 | MS.gene28939:CDS | 35.0% |
| !! | ACAGTTGGAGTATTGCTTAT+AGG | + | chr4.4:34538854-34538873 | None:intergenic | 35.0% |
| !! | ACTTTGTTTCTAACCCTCTT+AGG | + | chr4.4:34539074-34539093 | None:intergenic | 35.0% |
| !! | AGTGAGAAATTGGTTTGGTA+AGG | + | chr4.4:34537427-34537446 | None:intergenic | 35.0% |
| !! | AGTGCTAATGAGTGGATTAA+GGG | - | chr4.4:34538265-34538284 | MS.gene28939:CDS | 35.0% |
| !! | GTCCAACGACTAGTTTATAA+CGG | - | chr4.4:34538752-34538771 | MS.gene28939:CDS | 35.0% |
| !! | TGATGGGAAGTATGAGTTTT+TGG | - | chr4.4:34538378-34538397 | MS.gene28939:CDS | 35.0% |
| !! | TGGTTTGTTCTTGTTGTTGT+TGG | + | chr4.4:34537568-34537587 | None:intergenic | 35.0% |
| !! | TTTGGTGAAATGGGTTGATT+TGG | - | chr4.4:34538396-34538415 | MS.gene28939:CDS | 35.0% |
| !!! | TTGTTGTTGGTTTTGAGTTG+CGG | + | chr4.4:34537555-34537574 | None:intergenic | 35.0% |
| AAGCCTCAACCAATATTTCC+TGG | + | chr4.4:34539181-34539200 | None:intergenic | 40.0% | |
| AGGAGATATTGGAGAAGAGA+GGG | - | chr4.4:34538200-34538219 | MS.gene28939:CDS | 40.0% | |
| ATATTGGAGAAGAGAGGGAA+AGG | - | chr4.4:34538205-34538224 | MS.gene28939:CDS | 40.0% | |
| ATTATCGCGGTGGTCTAAAT+TGG | + | chr4.4:34537936-34537955 | None:intergenic | 40.0% | |
| CGTAGTTACGTCAGAAATCA+AGG | - | chr4.4:34538919-34538938 | MS.gene28939:CDS | 40.0% | |
| GAAACCCCATTATCATTACC+AGG | + | chr4.4:34538502-34538521 | None:intergenic | 40.0% | |
| GAATGCAGTGAATAATGGTG+AGG | - | chr4.4:34539097-34539116 | MS.gene28939:CDS | 40.0% | |
| GGTGGGAGAGAAATTCAAAT+GGG | + | chr4.4:34537481-34537500 | None:intergenic | 40.0% | |
| TCGGAATCAACATTCTCTTC+AGG | + | chr4.4:34538439-34538458 | None:intergenic | 40.0% | |
| TGCAATTCGGAAGAAGAATG+GGG | - | chr4.4:34538122-34538141 | MS.gene28939:CDS | 40.0% | |
| TGCTGAAGTAGAGGAGATAT+TGG | - | chr4.4:34538189-34538208 | MS.gene28939:CDS | 40.0% | |
| TGGAGTAGCAAAACTACTCT+TGG | - | chr4.4:34538003-34538022 | MS.gene28939:intron | 40.0% | |
| TGGTGGGAGAGAAATTCAAA+TGG | + | chr4.4:34537482-34537501 | None:intergenic | 40.0% | |
| TTAATGAACACATACGAGGC+CGG | - | chr4.4:34538976-34538995 | MS.gene28939:CDS | 40.0% | |
| ! | AACAGCATTGGATTTAGCGA+GGG | - | chr4.4:34538066-34538085 | MS.gene28939:CDS | 40.0% |
| ! | CTTCCAGGAAATATTGGTTG+AGG | - | chr4.4:34539175-34539194 | MS.gene28939:CDS | 40.0% |
| ! | GCTCAACCTGGTAATGATAA+TGG | - | chr4.4:34538493-34538512 | MS.gene28939:CDS | 40.0% |
| ! | TGATTTGGATGAACCCACTT+GGG | - | chr4.4:34538411-34538430 | MS.gene28939:CDS | 40.0% |
| !! | AAGAGTAGTTTTGCTACTCC+AGG | + | chr4.4:34538004-34538023 | None:intergenic | 40.0% |
| !! | AAGATGGAAGTGCTAATGAG+TGG | - | chr4.4:34538257-34538276 | MS.gene28939:CDS | 40.0% |
| !! | GATAGAACCTCTTGATTTGC+CGG | + | chr4.4:34538998-34539017 | None:intergenic | 40.0% |
| !! | GTCTTTTGCTATGAAGTCAG+CGG | + | chr4.4:34537723-34537742 | None:intergenic | 40.0% |
| !! | GTGCTAATGAGTGGATTAAG+GGG | - | chr4.4:34538266-34538285 | MS.gene28939:CDS | 40.0% |
| !! | TCTTTTGCTATGAAGTCAGC+GGG | + | chr4.4:34537722-34537741 | None:intergenic | 40.0% |
| !! | TGTTGATTCCGAGCTTGTTA+AGG | - | chr4.4:34538447-34538466 | MS.gene28939:CDS | 40.0% |
| !! | TTGATTTGGATGAACCCACT+TGG | - | chr4.4:34538410-34538429 | MS.gene28939:CDS | 40.0% |
| !! | TTGGGAGATAGAGAGTGTTT+GGG | + | chr4.4:34537455-34537474 | None:intergenic | 40.0% |
| !! | TTGGGAGCATTACTAACAGT+TGG | + | chr4.4:34538869-34538888 | None:intergenic | 40.0% |
| !! | TTTGGGAGATAGAGAGTGTT+TGG | + | chr4.4:34537456-34537475 | None:intergenic | 40.0% |
| !!! | ATCTTCAATGGTTTTGGGTG+TGG | + | chr4.4:34537588-34537607 | None:intergenic | 40.0% |
| !!! | GATTTTTTTGACTTCGCCGT+AGG | + | chr4.4:34537618-34537637 | None:intergenic | 40.0% |
| !!! | TGTTTTGAGGGCATTTTCGT+CGG | + | chr4.4:34537792-34537811 | None:intergenic | 40.0% |
| AAAGCCTTGGAAGATTCCAC+CGG | - | chr4.4:34537647-34537666 | MS.gene28939:intron | 45.0% | |
| AAGAATGGGGTTAGAAGGTG+TGG | - | chr4.4:34538135-34538154 | MS.gene28939:CDS | 45.0% | |
| AATCATCGGAAGCAAAGCCT+TGG | - | chr4.4:34537634-34537653 | MS.gene28939:intron | 45.0% | |
| ACAGCACTTCTATTTGTCGC+TGG | - | chr4.4:34537866-34537885 | MS.gene28939:intron | 45.0% | |
| AGCGTGGCTTCTTACTAGTT+GGG | + | chr4.4:34538887-34538906 | None:intergenic | 45.0% | |
| AGTCTACTGCATTTACGTCG+CGG | + | chr4.4:34537835-34537854 | None:intergenic | 45.0% | |
| ATAGACCACCGCTATTATCG+CGG | + | chr4.4:34537949-34537968 | None:intergenic | 45.0% | |
| ATTTACGTCGCGGTAATCGT+CGG | + | chr4.4:34537825-34537844 | None:intergenic | 45.0% | |
| GAGAGGGAAAGGTGAGAATT+TGG | - | chr4.4:34538216-34538235 | MS.gene28939:CDS | 45.0% | |
| GAGGAGATATTGGAGAAGAG+AGG | - | chr4.4:34538199-34538218 | MS.gene28939:CDS | 45.0% | |
| GCAAAACTACTCTTGGAGCT+TGG | - | chr4.4:34538010-34538029 | MS.gene28939:intron | 45.0% | |
| GGAAGAAGAATGGGGTTAGA+AGG | - | chr4.4:34538130-34538149 | MS.gene28939:CDS | 45.0% | |
| GTAAATGCAGTAGACTCCGA+TGG | - | chr4.4:34537839-34537858 | MS.gene28939:intron | 45.0% | |
| GTACATGCAAGAGCCTAAGA+GGG | - | chr4.4:34539058-34539077 | MS.gene28939:CDS | 45.0% | |
| TACTCCAGGTCTTACGTATC+CGG | + | chr4.4:34537990-34538009 | None:intergenic | 45.0% | |
| TGTACATGCAAGAGCCTAAG+AGG | - | chr4.4:34539057-34539076 | MS.gene28939:CDS | 45.0% | |
| TTAGACCACCGCGATAATAG+CGG | - | chr4.4:34537938-34537957 | MS.gene28939:intron | 45.0% | |
| TTCGATGAGATACTCCATGC+CGG | + | chr4.4:34537669-34537688 | None:intergenic | 45.0% | |
| ! | GAACAGCATTGGATTTAGCG+AGG | - | chr4.4:34538065-34538084 | MS.gene28939:CDS | 45.0% |
| ! | GCATGGAGTATCTCATCGAA+TGG | - | chr4.4:34537669-34537688 | MS.gene28939:intron | 45.0% |
| ! | TGGCCCCCTTATTTGCTTAT+AGG | - | chr4.4:34538953-34538972 | MS.gene28939:CDS | 45.0% |
| !! | CTAATGAGTGGATTAAGGGG+AGG | - | chr4.4:34538269-34538288 | MS.gene28939:CDS | 45.0% |
| !! | GATAATGGGGTTTCTACGGT+TGG | - | chr4.4:34538508-34538527 | MS.gene28939:CDS | 45.0% |
| !! | TAGAAGTGCTGTTCTGCCAT+CGG | + | chr4.4:34537858-34537877 | None:intergenic | 45.0% |
| !! | TTCTACGGTTGGTTTGAGTC+AGG | - | chr4.4:34538519-34538538 | MS.gene28939:CDS | 45.0% |
| !!! | GGCTTCGAGGATTGTTTTGA+GGG | + | chr4.4:34537804-34537823 | None:intergenic | 45.0% |
| !!! | TTGTTGGTTTTGAGTTGCGG+CGG | + | chr4.4:34537552-34537571 | None:intergenic | 45.0% |
| AAGACGGCCATGAACCTTCA+TGG | - | chr4.4:34537693-34537712 | MS.gene28939:intron | 50.0% | |
| AGACGGCCATGAACCTTCAT+GGG | - | chr4.4:34537694-34537713 | MS.gene28939:intron | 50.0% | |
| ATTCTCTTCAGGCTCCCAAG+TGG | + | chr4.4:34538428-34538447 | None:intergenic | 50.0% | |
| CCACCAGGGAGTTTCGTATT+CGG | + | chr4.4:34537753-34537772 | None:intergenic | 50.0% | |
| CGATCGTGGAAGAACAGCAT+TGG | - | chr4.4:34538054-34538073 | MS.gene28939:intron | 50.0% | |
| GAGCGTGGCTTCTTACTAGT+TGG | + | chr4.4:34538888-34538907 | None:intergenic | 50.0% | |
| GATTAAGGGGAGGTTTGTGG+CGG | - | chr4.4:34538279-34538298 | MS.gene28939:CDS | 50.0% | |
| GTCTAAATTGGCGCCAGCTT+CGG | + | chr4.4:34537924-34537943 | None:intergenic | 50.0% | |
| GTTAAGCTCTTAGCCGAAGC+TGG | - | chr4.4:34537908-34537927 | MS.gene28939:intron | 50.0% | |
| TACGGTCGTCAAATAGAGCG+TGG | + | chr4.4:34538903-34538922 | None:intergenic | 50.0% | |
| TCGGCTAAGAGCTTAACGCA+TGG | + | chr4.4:34537905-34537924 | None:intergenic | 50.0% | |
| TTCTCTTCAGGCTCCCAAGT+GGG | + | chr4.4:34538427-34538446 | None:intergenic | 50.0% | |
| TTTGGTGAGGGATTACGAGG+CGG | - | chr4.4:34538306-34538325 | MS.gene28939:CDS | 50.0% | |
| ! | CTTCTATTTGTCGCTGGCCT+CGG | - | chr4.4:34537872-34537891 | MS.gene28939:intron | 50.0% |
| ! | GAGAGTGAGAGATTGGTGGT+GGG | + | chr4.4:34537498-34537517 | None:intergenic | 50.0% |
| ! | GGGGTTAGAAGGTGTGGTTA+GGG | - | chr4.4:34538141-34538160 | MS.gene28939:CDS | 50.0% |
| ! | GTGGATTAAGGGGAGGTTTG+TGG | - | chr4.4:34538276-34538295 | MS.gene28939:CDS | 50.0% |
| ! | TGGGGTTAGAAGGTGTGGTT+AGG | - | chr4.4:34538140-34538159 | MS.gene28939:CDS | 50.0% |
| !! | ACGGTTGGTTTGAGTCAGGA+TGG | - | chr4.4:34538523-34538542 | MS.gene28939:CDS | 50.0% |
| !! | CGGCTTCGAGGATTGTTTTG+AGG | + | chr4.4:34537805-34537824 | None:intergenic | 50.0% |
| !! | CGGTTGGTTTGAGTCAGGAT+GGG | - | chr4.4:34538524-34538543 | MS.gene28939:CDS | 50.0% |
| !! | GGATTTGGTGAGGGATTACG+AGG | - | chr4.4:34538303-34538322 | MS.gene28939:CDS | 50.0% |
| !! | GTCGGAGAGTTGGTGATGAT+GGG | - | chr4.4:34538362-34538381 | MS.gene28939:CDS | 50.0% |
| !! | TTCGTCGGATTTTCTAGCGG+CGG | + | chr4.4:34537777-34537796 | None:intergenic | 50.0% |
| AAGTCAGCGGGTACCCATGA+AGG | + | chr4.4:34537710-34537729 | None:intergenic | 55.0% | |
| CATGCCGGTGGAATCTTCCA+AGG | + | chr4.4:34537654-34537673 | None:intergenic | 55.0% | |
| CCGAATACGAAACTCCCTGG+TGG | - | chr4.4:34537750-34537769 | MS.gene28939:intron | 55.0% | |
| CGGGTACCCATGAAGGTTCA+TGG | + | chr4.4:34537703-34537722 | None:intergenic | 55.0% | |
| CTTGGAAGATTCCACCGGCA+TGG | - | chr4.4:34537652-34537671 | MS.gene28939:intron | 55.0% | |
| GATGAGATACTCCATGCCGG+TGG | + | chr4.4:34537666-34537685 | None:intergenic | 55.0% | |
| GGAGAGTGAGAGATTGGTGG+TGG | + | chr4.4:34537499-34537518 | None:intergenic | 55.0% | |
| TACGAGGCCGGCAAATCAAG+AGG | - | chr4.4:34538988-34539007 | MS.gene28939:CDS | 55.0% | |
| TCGCCGAATACGAAACTCCC+TGG | - | chr4.4:34537747-34537766 | MS.gene28939:intron | 55.0% | |
| TTGGTGAGGGATTACGAGGC+GGG | - | chr4.4:34538307-34538326 | MS.gene28939:CDS | 55.0% | |
| ! | GAGGTTTGTGGCGGAGGATT+TGG | - | chr4.4:34538288-34538307 | MS.gene28939:CDS | 55.0% |
| ! | TGTGGCGGAGAGTGAGAGAT+TGG | + | chr4.4:34537505-34537524 | None:intergenic | 55.0% |
| !! | CCACGATCGTCGCTGATTTC+CGG | + | chr4.4:34538043-34538062 | None:intergenic | 55.0% |
| !! | CTTGGAGCTTGGTGCTGATC+CGG | - | chr4.4:34538021-34538040 | MS.gene28939:intron | 55.0% |
| !! | GGTCGGAGAGTTGGTGATGA+TGG | - | chr4.4:34538361-34538380 | MS.gene28939:CDS | 55.0% |
| !! | TGTGGCGGAGGATTTGGTGA+GGG | - | chr4.4:34538294-34538313 | MS.gene28939:CDS | 55.0% |
| !! | TTGCGAGTTTGGCGGGTTTG+TGG | + | chr4.4:34537523-34537542 | None:intergenic | 55.0% |
| !! | TTGTGGCGGAGGATTTGGTG+AGG | - | chr4.4:34538293-34538312 | MS.gene28939:CDS | 55.0% |
| !!! | GTTTTGAGTTGCGGCGGTGA+CGG | + | chr4.4:34537546-34537565 | None:intergenic | 55.0% |
| CCGGAAATCAGCGACGATCG+TGG | - | chr4.4:34538040-34538059 | MS.gene28939:intron | 60.0% | |
| GACCACCGCGATAATAGCGG+TGG | - | chr4.4:34537941-34537960 | MS.gene28939:intron | 60.0% | |
| GACCACCGCTATTATCGCGG+TGG | + | chr4.4:34537946-34537965 | None:intergenic | 60.0% | |
| GCAGCCGGATACGTAAGACC+TGG | - | chr4.4:34537983-34538002 | MS.gene28939:intron | 60.0% | |
| GGCGGAGAGTGAGAGATTGG+TGG | + | chr4.4:34537502-34537521 | None:intergenic | 60.0% | |
| GTGACGGTTGCGAGTTTGGC+GGG | + | chr4.4:34537530-34537549 | None:intergenic | 60.0% | |
| TAAGGGGAGGTTTGTGGCGG+AGG | - | chr4.4:34538282-34538301 | MS.gene28939:CDS | 60.0% | |
| TGGTCTATCCGCGCTGCACA+TGG | - | chr4.4:34537961-34537980 | MS.gene28939:intron | 60.0% | |
| TGGTGAGGGATTACGAGGCG+GGG | - | chr4.4:34538308-34538327 | MS.gene28939:CDS | 60.0% | |
| ! | GGTGACGGTTGCGAGTTTGG+CGG | + | chr4.4:34537531-34537550 | None:intergenic | 60.0% |
| ! | TTTCTAGCGGCGGTCCACCA+GGG | + | chr4.4:34537767-34537786 | None:intergenic | 60.0% |
| !! | CGAGTTTGGCGGGTTTGTGG+CGG | + | chr4.4:34537520-34537539 | None:intergenic | 60.0% |
| !! | TAACGCATGGCTCTGAGCCG+AGG | + | chr4.4:34537892-34537911 | None:intergenic | 60.0% |
| !! | TTTTCTAGCGGCGGTCCACC+AGG | + | chr4.4:34537768-34537787 | None:intergenic | 60.0% |
| TGGCGGAAGCGGTGGTTGGT+CGG | - | chr4.4:34538344-34538363 | MS.gene28939:CDS | 65.0% | |
| ! | GCGGTGGTTGGTCGGAGAGT+TGG | - | chr4.4:34538352-34538371 | MS.gene28939:CDS | 65.0% |
| ! | GGCGGTGACGGTTGCGAGTT+TGG | + | chr4.4:34537534-34537553 | None:intergenic | 65.0% |
| !! | CGCGGTAATCGTCGGCTTCG+AGG | + | chr4.4:34537817-34537836 | None:intergenic | 65.0% |
| !! | TGAGTACGCGGTGGCGGAAG+CGG | - | chr4.4:34538333-34538352 | MS.gene28939:CDS | 65.0% |
| CGAGGCGGGGCTTGAGTACG+CGG | - | chr4.4:34538321-34538340 | MS.gene28939:CDS | 70.0% | |
| GGGGCTTGAGTACGCGGTGG+CGG | - | chr4.4:34538327-34538346 | MS.gene28939:CDS | 70.0% | |
| TCCGCGCTGCACATGGCAGC+CGG | - | chr4.4:34537968-34537987 | MS.gene28939:intron | 70.0% | |
| TCCGGCTGCCATGTGCAGCG+CGG | + | chr4.4:34537972-34537991 | None:intergenic | 70.0% | |
| GGCGGGGCTTGAGTACGCGG+TGG | - | chr4.4:34538324-34538343 | MS.gene28939:CDS | 75.0% | |
| !! | GCGGTGGCGGAAGCGGTGGT+TGG | - | chr4.4:34538340-34538359 | MS.gene28939:CDS | 75.0% |
| !! | GTACGCGGTGGCGGAAGCGG+TGG | - | chr4.4:34538336-34538355 | MS.gene28939:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34537410 | 34539202 | 34537410 | ID=MS.gene28939 |
| chr4.4 | mRNA | 34537410 | 34539202 | 34537410 | ID=MS.gene28939.t1;Parent=MS.gene28939 |
| chr4.4 | exon | 34538057 | 34539202 | 34538057 | ID=MS.gene28939.t1.exon1;Parent=MS.gene28939.t1 |
| chr4.4 | CDS | 34538057 | 34539202 | 34538057 | ID=cds.MS.gene28939.t1;Parent=MS.gene28939.t1 |
| chr4.4 | exon | 34537410 | 34537637 | 34537410 | ID=MS.gene28939.t1.exon2;Parent=MS.gene28939.t1 |
| chr4.4 | CDS | 34537410 | 34537637 | 34537410 | ID=cds.MS.gene28939.t1;Parent=MS.gene28939.t1 |
| Gene Sequence |
| Protein sequence |
