AlfalfaGEDB | MS.gene29756

M. sativa cultivar XinJiangDaYe / MS.gene29756

KEGG: K05399
GO: GO:0003674 GO:0005488 GO:0008289
PFAM: PF01273.28 PF02886.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29756.t1	XP_003616827.2	96.7	423	14	0	1	423	72	494	6.30E-234	819.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29756.t1	Q9MAU5	60.1	416	164	2	2	417	70	483	8.5e-147	521.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29756.t1	G7K7F5	96.7	423	14	0	1	423	72	494	4.5e-234	819.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene29756	0.829151	6.04E-55	-1.69E-46
MS.gene049230	MS.gene29756	0.802325	5.92E-49	-1.69E-46
MS.gene049378	MS.gene29756	0.819089	1.39E-52	-1.69E-46
MS.gene049435	MS.gene29756	0.805022	1.63E-49	-1.69E-46
MS.gene049647	MS.gene29756	0.800997	1.11E-48	-1.69E-46
MS.gene049801	MS.gene29756	0.8064	8.38E-50	-1.69E-46
MS.gene050226	MS.gene29756	0.814316	1.64E-51	-1.69E-46
MS.gene050227	MS.gene29756	0.800076	1.71E-48	-1.69E-46
MS.gene050228	MS.gene29756	0.808009	3.82E-50	-1.69E-46
MS.gene050442	MS.gene29756	0.817831	2.69E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29756.t1	MTR_5g084690	96.690	423	14	0	1	423	72	494	0.0	837
MS.gene29756.t1	MTR_5g093980	49.173	423	211	3	1	423	67	485	1.97e-145	423
MS.gene29756.t1	MTR_3g054360	45.606	421	226	3	1	421	69	486	2.38e-126	374

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29756.t1	AT1G04970	59.809	418	166	2	1	418	69	484	0.0	528
MS.gene29756.t1	AT1G04970	60.000	350	139	1	69	418	10	358	5.78e-157	447
MS.gene29756.t1	AT1G04970	60.000	350	139	1	69	418	10	358	5.78e-157	447
MS.gene29756.t1	AT3G20270	37.561	410	249	2	1	410	107	509	6.63e-102	313
MS.gene29756.t1	AT3G20270	37.561	410	249	2	1	410	107	509	6.63e-102	313
MS.gene29756.t1	AT3G20270	37.561	410	249	2	1	410	107	509	6.63e-102	313
MS.gene29756.t1	AT3G20270	37.561	410	249	2	1	410	314	716	7.10e-99	311
MS.gene29756.t1	AT3G20270	37.561	410	249	2	1	410	314	716	7.10e-99	311
MS.gene29756.t1	AT3G20270	37.326	359	218	2	1	359	107	458	7.32e-85	267

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Find 89 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTACATCATAATACA+AGG	0.616369	5.3:-68479133	None:intergenic
AAACCATGAATAATGGGCAA+GGG	0.633824	5.3:-68481138	None:intergenic
AACATAAACCTACCTGAATA+AGG	0.302925	5.3:-68480493	None:intergenic
AACGAAGAGTGATCATCGAC+CGG	0.595323	5.3:-68478910	None:intergenic
AAGGTGAAACCATGAATAAT+GGG	0.440200	5.3:-68481144	None:intergenic
AAGTAAACACTACCCAACAT+TGG	0.621139	5.3:-68477625	None:intergenic
AAGTCTTCCGAAGGAGGTTC+CGG	0.360461	5.3:+68478891	MS.gene29756:CDS
AATGCCTTCTCCAAGATTCT+TGG	0.286219	5.3:-68478845	None:intergenic
AATGCTATCACCAAGAATCT+TGG	0.412923	5.3:+68478835	MS.gene29756:CDS
AATTGAACTTAAATTGGGAT+TGG	0.398273	5.3:+68478544	MS.gene29756:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACTGTTTAAGTCATAG+GGG	-	chr5.3:68479347-68479366	None:intergenic	30.0%
AAATGAGCTAGAATCTGATA+TGG	-	chr5.3:68478688-68478707	None:intergenic	30.0%
AACATAAACCTACCTGAATA+AGG	-	chr5.3:68480496-68480515	None:intergenic	30.0%
AAGGTGAAACCATGAATAAT+GGG	-	chr5.3:68481147-68481166	None:intergenic	30.0%
ATAAATGGAAATAACCTCGT+AGG	+	chr5.3:68480404-68480423	MS.gene29756:CDS	30.0%
ATACACACATCAGTTAATCT+CGG	-	chr5.3:68478290-68478309	None:intergenic	30.0%
ATATTTGAAAAGTCTTCCGA+AGG	+	chr5.3:68478882-68478901	MS.gene29756:CDS	30.0%
GAAATTTATGCATTGGATTG+TGG	+	chr5.3:68479524-68479543	MS.gene29756:CDS	30.0%
GAGTATAGTAGTATTTGGTT+TGG	+	chr5.3:68477772-68477791	MS.gene29756:CDS	30.0%
GATGAATTTGTGCATAGAAT+TGG	-	chr5.3:68479063-68479082	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	68477628	68481263	68477628	ID=MS.gene29756
chr5.3	mRNA	68477628	68481263	68477628	ID=MS.gene29756.t1;Parent=MS.gene29756
chr5.3	exon	68477628	68477834	68477628	ID=MS.gene29756.t1.exon1;Parent=MS.gene29756.t1
chr5.3	CDS	68477628	68477834	68477628	ID=cds.MS.gene29756.t1;Parent=MS.gene29756.t1
chr5.3	exon	68478530	68478669	68478530	ID=MS.gene29756.t1.exon2;Parent=MS.gene29756.t1
chr5.3	CDS	68478530	68478669	68478530	ID=cds.MS.gene29756.t1;Parent=MS.gene29756.t1
chr5.3	exon	68478792	68479146	68478792	ID=MS.gene29756.t1.exon3;Parent=MS.gene29756.t1
chr5.3	CDS	68478792	68479146	68478792	ID=cds.MS.gene29756.t1;Parent=MS.gene29756.t1
chr5.3	exon	68479522	68479770	68479522	ID=MS.gene29756.t1.exon4;Parent=MS.gene29756.t1
chr5.3	CDS	68479522	68479770	68479522	ID=cds.MS.gene29756.t1;Parent=MS.gene29756.t1
chr5.3	exon	68480377	68480502	68480377	ID=MS.gene29756.t1.exon5;Parent=MS.gene29756.t1
chr5.3	CDS	68480377	68480502	68480377	ID=cds.MS.gene29756.t1;Parent=MS.gene29756.t1
chr5.3	exon	68481069	68481263	68481069	ID=MS.gene29756.t1.exon6;Parent=MS.gene29756.t1
chr5.3	CDS	68481069	68481263	68481069	ID=cds.MS.gene29756.t1;Parent=MS.gene29756.t1

Gene Sequence

>MS.gene29756

ATGTTGGGTAGTGTTTACTTTGTGCTTTCTAATATCACAATATATGAAATTGATGTTGATTCTTCTATTGTTAAGCCTGGTGAGAGTGGAATTGAGATTGTTGCTTCTGGGGTTAGTTGTAATTTGAGCTTGGATTGGTCTTATGAGTATAGTAGTATTTGGTTTGGTCCTGTTAAGGTTTCTGATCAAGGTTCAGCACAAGTTCAGGTATGAAAAAAATGATCCTTTGTTTTTGTGTTTTTTATTTTGGATTTGTATGTATATGTGTAGAATGGTGTTTAGATATGTAGAAAATTTGTGTTGCGAATAGAAACATAATCTATTTATGATTGTGGTTTAGGCCTTGAGAGAATAAACTTAATTAAGTGCTTATTATAGTATAATTGTAAGTGTTATCATATAAGTGCCTATGTATAAGCTATCTTTTTAACAAAAGATAAGCAGGGTCGAACTGTTTTCGTATAAGCTATAAGCTGGTTTCATAAGCTATCATACAGAACTCGTGGAGATAAATTGAAAAGTGCTTATGGACATGTAATAAGCAGTAAATATGTGACACATTTATTGATATTGGCCGTCCGATCTTAAATCAGTGATGAAGACGATTTAAAGATGATTTGGTAAATGTGTAAAGTGAGCCGAGCAATATCAATCAATGGCCGAGATTAACTGATGTGTGTATCTGCATGTTTTTTTAGATACCGGGAATCTGGATCCCTACCAATGTCAACTTATTTAATGATAAATTTTATTGCTGCACTAAATATGGATAATGTAACTTATGGATGGCTGAGACTAACGATACATGTTTCTTTTTAATATTAATTTTGTTTCAATATTTCTTCATTTTCTTCATAAAAATGTAATGAAAAGGGAATTTGATAAGTGCTGATTTTGGAAAGGTTGAAGGCATGGAAATTGAACTTAAATTGGGATTGGAGAACCAGGAAGGATATTTGGATCTCAAACTTAAGGACTGTGGTTCTTCTGTTAAAGATATTTCAATAAAATTGGATGGTGGTGCATCTTGGCTTTATCAAGGGTATGGCAGCAATAACCATATCAGATTCTAGCTCATTTCATATTTCATGTGTCACTTTTATGTGACAGAAAACGAATGATTTTATGGTGTTTTGACTTTTAGTTTTGATTCATACCTAACAGGATTCTTGATGCTTTTGAAGGGAATATTGGATCAGCAGTAGAAAATGCTATCACCAAGAATCTTGGAGAAGGCATTACAAGGCTCGACTCATATTTGAAAAGTCTTCCGAAGGAGGTTCCGGTCGATGATCACTCTTCGTTGAATGTAACTTTTGTCAACAATGTTTTACTAAGTGAGTCGTCAATTGGGTTTGAAACGAATGGGTTATTTATAAAAAGAAATGATTCCCTGCCTATTCCTAACCTCTGGCACAAAAACTCAAAACTTCCAATTCTATGCACAAATTCATCGAAAATGCTAGCAATCACTTTAGACGAGGCTGTTTTCAACTCTGCATCATCCTTGTATTATGATGTAAGTTTTGATGTTTGGTCATGATCTTTGGTTTGGTTTGGTTCGGTTGGTAAAATCAAAACCGCAAACCGAACCGAACCATGCAGTTGAATAAAAAAATGATTTGAATACATCCGAACCAAATGCGGTTTTTTGCGGTTTTAATTTGGATTGGTTCGGTTTGCGGTTTTTCTATTGGATTGGTTCGGTTTTGAACACCCCTATGACTTAAACAGTGTTTTAAAAACTGAACCGAACCATGATCCAGAGTTCTTGTCTGTTTGATGTCTGGTTCGGATTTTAAAACATGCCGTAAAGCATGAATTTTCCTAAAATATTTTTTTCTATATCATTGGATTGGATTAGTGTTAAATGAGAAATTGTTTCGATGTTCAGGCGAAATTTATGCATTGGATTGTGGACAAAATACCAGATCAATCTCTATTGAACACTGCAGGATGGAAATTTATTATTCCTCAATTGTACAGGAAATACCCAAATCATGAAATGAACTTGAATATATCTTTGTCATCTCCTCCGGTTGTGGAGATTTCAGATCAGAAAGCAGGTGCTGAAATATTTGCAGATTTAACAATTGATGTTTTAGAAGAAGATGAAGTAATACCAGTAGCATGCATCTCATTGGTAGGGTCTTTGATATTTAATGAACTTCATTTTTTGCCATAATTTATGTGTATGTTTTTTCCTTCACCATTCTTATTCTCTGAATATATTACTTTGGTGTTGCTATACCTCAATGTTATTTTGATTATGATGAATTATATGGGTTGGTGTGGATGTAACATGAAGCTCGATCCAAGACATTGTTGTCAAGTACAGACTATAGCGCTACAACGCAGCGGAATTCGAACAAATTGCAATTGTTTTACAATGTGCTATTTAGTACAAGTTGTTGTCAATTACCGGCTATTGTAGCGCCATAGTATTGTAGCATAGCATAAATAGCACAACCACTATTTTCTGCAATCTGCGGTTGACAACACTTGCTCTAGAAGACCGAGTTTAAAAGATTAGATGTTTGGTTAGTTTTACAATTCAGTGCTGCTAATTGTTTTTCAAAAGACTTGATAACATATCATAATTATATAAGTTTATCCAGACACTGTTTAGTCAAAATGCAAAGTCTGCAAAATTCATTGTATCATATCTTTATTCCTGTCTTTGTACACCTTACAATAAGTTGTCATTTCTTTTTGATCACTATTGCTATATTCCATCTTGTTTCCACAGATGATTCAAGCTTCAGGTTTGGTCAAAATAAATGGAAATAACCTCGTAGGTACCATCAGATTGGGTGACTTTGGAATGTCATTGAAATGGAGCAACATTGGCAATCTACGAATGTTCCTTATTCAGGTAGGTTTATGTTGTTACATGTGACACAGAGTTAATAATATGTACGAACAATGAAAAAAAATATTTAGTAGTTCAAACATAAATCATTATAAGTTCAGGTTTTAATATTACTTCTTAAAACCTGTGTTTAAATATCAATATGACGAGATTCATATGATTGAATTTCTGTGTAAAATTTCTTTATGCTTTCAGTGGATAGTTGTAAATTCTAGCGCACATAGGGTATGTTTGAATTGGCTTATTTGAGCTTATCGACTAACATAAGCACTTGTGAGATTGAGAGATTTTATGGAAACATCTTATGACATGTCCAGAAGCTGTTTTTAACTTATTTCCATTAGCTCTCTAGGATAGCTTATGAAATCAGCTTATAGCTTATATGAGAACAGTTTGATTTATAATATCTTTTGTCATAGAAATAGCTTCTATGTAAACACTTATTTGATAAGTACTTAAGTTATAAATGTTTAAATAAGTTTTTCATCCAAACATGACTATTGTGAATAAACTTATTAATTTTAAGATGTCTCATTGATGAAGGGTGTTTTATTCTTTTTTTCCTGCAGCCAGTTATGTGGACAATTATTGAAACAGTCTTCTTGCCATATGCAAATGCACATCTAAGTAAAGGTTTACCCTTGCCCATTATTCATGGTTTCACCTTACAAGACGCAGAGATAATCTTGTCATCGTCAAGAGTCGCAGTTTGTAGTGATGTATCATTTGCAGATTCAAACAAGCATTTCTTACAATCTCATTGA

Protein sequence

>MS.gene29756.t1

MLGSVYFVLSNITIYEIDVDSSIVKPGESGIEIVASGVSCNLSLDWSYEYSSIWFGPVKVSDQGSAQVQVEGMEIELKLGLENQEGYLDLKLKDCGSSVKDISIKLDGGASWLYQGILDAFEGNIGSAVENAITKNLGEGITRLDSYLKSLPKEVPVDDHSSLNVTFVNNVLLSESSIGFETNGLFIKRNDSLPIPNLWHKNSKLPILCTNSSKMLAITLDEAVFNSASSLYYDAKFMHWIVDKIPDQSLLNTAGWKFIIPQLYRKYPNHEMNLNISLSSPPVVEISDQKAGAEIFADLTIDVLEEDEVIPVACISLMIQASGLVKINGNNLVGTIRLGDFGMSLKWSNIGNLRMFLIQPVMWTIIETVFLPYANAHLSKGLPLPIIHGFTLQDAEIILSSSRVAVCSDVSFADSNKHFLQSH