AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31665


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31665.t1 MTR_1g007490 94.514 401 12 4 1 400 1 392 0.0 752
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31665.t1 AT5G48470 70.419 382 92 5 25 399 30 397 0.0 520

Find 92 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAACTTCTTAACTAAAT+TGG 0.216407 1.1:-12026442 MS.gene31665:CDS
TAAGTGGAAGTTGTTAAATT+TGG 0.222471 1.1:+12028703 None:intergenic
GCTGGTGGCGGTTTATTTAA+AGG 0.249104 1.1:-12027210 MS.gene31665:CDS
TTGGCTGCACAAGGAGTTAT+TGG 0.297509 1.1:-12027796 MS.gene31665:CDS
CAACGTGAAGCACTTCTTAA+AGG 0.300057 1.1:-12028502 MS.gene31665:CDS
CCAGGCTGATGATTTATTAG+AGG 0.340782 1.1:-12027133 MS.gene31665:intron
TTCGTAACTCGTTTCGCTGC+TGG 0.342996 1.1:+12028606 None:intergenic
ATTGCCTCAGTTGGAAGATA+TGG 0.352674 1.1:-12027854 MS.gene31665:intron
AAAGACACTTGAAGTCCTTC+AGG 0.380892 1.1:-12025347 MS.gene31665:CDS
TGGTATCACTGCACAACATC+TGG 0.381522 1.1:-12025833 MS.gene31665:CDS
GTTTCTCGAAACAGTCTCTA+AGG 0.386239 1.1:-12026146 MS.gene31665:intron
AGGGTTTCAGTAGGATTTGC+TGG 0.394147 1.1:-12026321 MS.gene31665:CDS
CATGATCGAGCTTGCTGAAA+AGG 0.406361 1.1:-12027725 MS.gene31665:CDS
TCTATGTAGAACTCCCAAAA+AGG 0.407720 1.1:-12027265 MS.gene31665:CDS
CGCCGAGTTGCAGCTGGTGG+CGG 0.436206 1.1:-12027222 MS.gene31665:CDS
GTCTTGTCTGGTATATATGC+TGG 0.441648 1.1:-12025865 MS.gene31665:CDS
AGAAGAAGCCCGTGATATGA+TGG 0.446513 1.1:-12026690 MS.gene31665:CDS
AAATTGGTGGCCTTAAAACC+TGG 0.455899 1.1:-12026426 MS.gene31665:CDS
TCAGTTGGAAGATATGGATA+TGG 0.459065 1.1:-12027848 MS.gene31665:intron
AGAAACATGCCCGGGCGTAC+AGG 0.472167 1.1:+12026163 None:intergenic
CGGTTAAGAAGTTCGTTAAG+TGG 0.478824 1.1:+12028568 None:intergenic
CTTAAAACACTGTTGGTAAG+TGG 0.479742 1.1:+12028687 None:intergenic
CAAGCTCGATCATGTAATCA+AGG 0.480867 1.1:+12027734 None:intergenic
GATATCCAGGCAAGTGTGAC+AGG 0.482176 1.1:-12026199 MS.gene31665:intron
GAGATGTTTGTGTGGATAGC+GGG 0.482357 1.1:+12028749 None:intergenic
CACTGCACAACATCTGGAAT+GGG 0.487263 1.1:-12025827 MS.gene31665:intron
GCTTCAACTTAAAACACTGT+TGG 0.489442 1.1:+12028680 None:intergenic
ATGCCCGGGCGTACAGGATG+TGG 0.493271 1.1:+12026169 None:intergenic
AAGAAGTTCCTTACCTGGGG+TGG 0.495817 1.1:+12027388 None:intergenic
ATATCCAGCACAACTTTCCC+AGG 0.498084 1.1:+12026408 None:intergenic
GAAGCCACATCCTGTACGCC+CGG 0.507103 1.1:-12026173 MS.gene31665:CDS
CAGATCGAAAACTGCTTGCA+AGG 0.510311 1.1:-12026727 MS.gene31665:CDS
TGAAAAGGACCAGGATGATA+AGG 0.514097 1.1:-12027710 MS.gene31665:intron
AAATGAAAACTCAGAGGAAG+AGG 0.517964 1.1:-12028545 MS.gene31665:CDS
TCACTGCACAACATCTGGAA+TGG 0.520829 1.1:-12025828 MS.gene31665:CDS
TGTCATTTAGATTCGCCCCT+GGG 0.520970 1.1:+12027163 None:intergenic
AAAACCTGGGAAAGTTGTGC+TGG 0.524406 1.1:-12026412 MS.gene31665:CDS
TTTCAGTAGGATTTGCTGGA+AGG 0.527571 1.1:-12026317 MS.gene31665:CDS
TGAGAAAGTAGCAGTGGAGT+TGG 0.529397 1.1:-12027815 MS.gene31665:CDS
ACGAGTTACGAAGTTGGTGG+TGG 0.530088 1.1:-12028595 MS.gene31665:CDS
GGTAATCATTTCTTGAAGAA+CGG 0.532423 1.1:+12028462 None:intergenic
TTCAGTAGGATTTGCTGGAA+GGG 0.534641 1.1:-12026316 MS.gene31665:intron
ATATACTCTACCTCCGGCTG+AGG 0.542581 1.1:-12026630 MS.gene31665:intron
CTGGCAACGATGATGATGAC+AGG 0.544853 1.1:-12026341 MS.gene31665:CDS
GCCCGTGATATGATGGGAGG+GGG 0.546168 1.1:-12026683 MS.gene31665:CDS
TTGTTACGCCGAGTTGCAGC+TGG 0.549323 1.1:-12027228 MS.gene31665:CDS
CGAGCTTGCTGAAAAGGACC+AGG 0.550984 1.1:-12027719 MS.gene31665:CDS
GAACTTCTTAACTAAATTGG+TGG 0.554110 1.1:-12026439 MS.gene31665:CDS
GATGCAGCGCAAGTCACTGT+TGG 0.554159 1.1:-12027455 MS.gene31665:intron
AAAATCACACCTTATCATCC+TGG 0.554236 1.1:+12027701 None:intergenic
GACTTGAAGATTCATATCCC+AGG 0.555335 1.1:-12027180 MS.gene31665:CDS
ATGATAAGAAATGTGATGCT+CGG 0.559415 1.1:-12026387 MS.gene31665:CDS
AGAAGTTCCTTACCTGGGGT+GGG 0.562953 1.1:+12027389 None:intergenic
GGAGATGTTTGTGTGGATAG+CGG 0.564644 1.1:+12028748 None:intergenic
TCACATCAACATACCTCAGC+CGG 0.565847 1.1:+12026617 None:intergenic
TGGATTATATACTCTACCTC+CGG 0.568191 1.1:-12026636 MS.gene31665:CDS
TCTAAATGACATAGCTAACC+AGG 0.568769 1.1:-12027151 MS.gene31665:CDS
AGCCCGTGATATGATGGGAG+GGG 0.571772 1.1:-12026684 MS.gene31665:CDS
GAAGAAGCCCGTGATATGAT+GGG 0.572557 1.1:-12026689 MS.gene31665:CDS
AACCGCCACCAGCTGCAACT+CGG 0.572890 1.1:+12027220 None:intergenic
CTGTTTCGAGAAACATGCCC+GGG 0.576547 1.1:+12026155 None:intergenic
ATGTCATTTAGATTCGCCCC+TGG 0.579401 1.1:+12027162 None:intergenic
TGGTAAGAGAGTTGATCAGA+TGG 0.580714 1.1:-12027776 MS.gene31665:CDS
CCTCTAATAAATCATCAGCC+TGG 0.582816 1.1:+12027133 None:intergenic
AGAATCTGAGAAAGTAGCAG+TGG 0.584761 1.1:-12027821 MS.gene31665:CDS
GCAGTGGAGTTGGCTGCACA+AGG 0.598277 1.1:-12027805 MS.gene31665:CDS
GATGATGACAGGGTTTCAGT+AGG 0.598496 1.1:-12026330 MS.gene31665:CDS
TCCAGGCAAGTGTGACAGGA+CGG 0.598526 1.1:-12026195 MS.gene31665:intron
ACTTGAAGATTCATATCCCA+GGG 0.598867 1.1:-12027179 MS.gene31665:CDS
AGCGAAACGAGTTACGAAGT+TGG 0.600034 1.1:-12028601 MS.gene31665:CDS
AATTGGTGGCCTTAAAACCT+GGG 0.600896 1.1:-12026425 MS.gene31665:CDS
TTACGCCGAGTTGCAGCTGG+TGG 0.603081 1.1:-12027225 MS.gene31665:CDS
GATGGAATCTGATTTCATGA+TGG 0.604669 1.1:-12027758 MS.gene31665:CDS
ACTGTTTCGAGAAACATGCC+CGG 0.605216 1.1:+12026154 None:intergenic
AGTTAAATGCTATCTCCTGA+AGG 0.608001 1.1:+12025332 None:intergenic
AAGCCCGTGATATGATGGGA+GGG 0.613927 1.1:-12026685 MS.gene31665:CDS
GTGATGCTCGGAAAAGATGA+AGG 0.623308 1.1:-12026375 MS.gene31665:CDS
AAGCTCGATCATGTAATCAA+GGG 0.627384 1.1:+12027735 None:intergenic
AAGCCACATCCTGTACGCCC+GGG 0.634835 1.1:-12026172 MS.gene31665:CDS
GAAACGAGTTACGAAGTTGG+TGG 0.639914 1.1:-12028598 MS.gene31665:CDS
GAGGTAGAGTATATAATCCA+CGG 0.643703 1.1:+12026639 None:intergenic
CGTGAAGCACTTCTTAAAGG+TGG 0.644178 1.1:-12028499 MS.gene31665:CDS
AATGTAAGGAGATGTTTGTG+TGG 0.646000 1.1:+12028741 None:intergenic
GATGAAGGTGCAGACAACAC+TGG 0.647546 1.1:-12026360 MS.gene31665:CDS
CCCGTGATATGATGGGAGGG+GGG 0.648810 1.1:-12026682 MS.gene31665:CDS
GAAGCCCGTGATATGATGGG+AGG 0.651249 1.1:-12026686 MS.gene31665:CDS
TTGGACGAAAGAAATGACCG+TGG 0.661469 1.1:-12026656 MS.gene31665:CDS
TGGCAACGATGATGATGACA+GGG 0.681533 1.1:-12026340 MS.gene31665:CDS
CATCAACATACCTCAGCCGG+AGG 0.697012 1.1:+12026620 None:intergenic
TAACCGAAATGAAAACTCAG+AGG 0.701522 1.1:-12028551 MS.gene31665:CDS
ATATATGCTGGATCTGACAA+TGG 0.706008 1.1:-12025853 MS.gene31665:CDS
CTTGAAGATTCATATCCCAG+GGG 0.774008 1.1:-12027178 MS.gene31665:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATAATTGTAAAATACT+TGG - chr1.1:12028048-12028067 MS.gene31665:intron 15.0%
!! TTTGAAAATAGAAACATTTA+TGG + chr1.1:12028332-12028351 None:intergenic 15.0%
!!! AAAAATAAAAAAGTATCAAC+TGG + chr1.1:12028218-12028237 None:intergenic 15.0%
!!! TGTATAGATTTAAAACTAAA+TGG - chr1.1:12027590-12027609 MS.gene31665:intron 15.0%
!! AAACATGAATGAAAAATGTA+AGG + chr1.1:12025384-12025403 None:intergenic 20.0%
!! AATAGAAACATTTATGGATT+TGG + chr1.1:12028326-12028345 None:intergenic 20.0%
!! AATCTATTACAATCTACATT+TGG - chr1.1:12026508-12026527 MS.gene31665:intron 20.0%
!! AATTTATACATGTAACATAG+TGG + chr1.1:12026230-12026249 None:intergenic 20.0%
!! ACAATTATATGTTAATTCTC+AGG + chr1.1:12028040-12028059 None:intergenic 20.0%
!! ACCATTCATCATAAAAAATA+TGG + chr1.1:12027998-12028017 None:intergenic 20.0%
!! AGATTGTAATAGATTATAGT+TGG + chr1.1:12026503-12026522 None:intergenic 20.0%
!! ATATTTATCACTCAATTGAA+AGG + chr1.1:12027267-12027286 None:intergenic 20.0%
!! TAATAATCAGGATATATATC+AGG + chr1.1:12028145-12028164 None:intergenic 20.0%
!! TAGAAATAGATATTTATGAC+AGG + chr1.1:12028373-12028392 None:intergenic 20.0%
!! TCAAGTAAAATAACTTACAA+GGG + chr1.1:12025670-12025689 None:intergenic 20.0%
!! TTAAATCTATACATATCTAG+TGG + chr1.1:12027583-12027602 None:intergenic 20.0%
!! TTCAAGTAAAATAACTTACA+AGG + chr1.1:12025671-12025690 None:intergenic 20.0%
!!! AAATCGTATTTTGGTTAATT+TGG + chr1.1:12026572-12026591 None:intergenic 20.0%
!!! TTGTTTCTTCATGTTATATT+TGG - chr1.1:12028534-12028553 MS.gene31665:CDS 20.0%
! AAAAGAATGTCCTTATCAAT+TGG - chr1.1:12026005-12026024 MS.gene31665:intron 25.0%
! AAAGAATGTCCTTATCAATT+GGG - chr1.1:12026006-12026025 MS.gene31665:intron 25.0%
! AAGAAAAAGAAATGTTTGCA+AGG + chr1.1:12026127-12026146 None:intergenic 25.0%
! AGTTGAAAATTTCACTCTAT+TGG - chr1.1:12028074-12028093 MS.gene31665:intron 25.0%
! ATCAAAATATATGCACAGTT+AGG + chr1.1:12026636-12026655 None:intergenic 25.0%
! ATGATTAAACAACTGTATGA+AGG + chr1.1:12027040-12027059 None:intergenic 25.0%
! GATTAATTGTTTACAGACAA+TGG - chr1.1:12027340-12027359 MS.gene31665:intron 25.0%
! GTTATCAAAGTAAAACAGTT+TGG + chr1.1:12028104-12028123 None:intergenic 25.0%
! GTTGAAAATTTCACTCTATT+GGG - chr1.1:12028075-12028094 MS.gene31665:intron 25.0%
! TAAGTGGAAGTTGTTAAATT+TGG + chr1.1:12025408-12025427 None:intergenic 25.0%
! TGTATGATAGAGTAATAATC+AGG + chr1.1:12028157-12028176 None:intergenic 25.0%
! TTTGAATTCAATTTCTCCAA+CGG + chr1.1:12025735-12025754 None:intergenic 25.0%
!! AACAGTGTTTAAAATTCATG+TGG + chr1.1:12027319-12027338 None:intergenic 25.0%
!! ATTCTGTTGTTTGTGTTAAA+AGG - chr1.1:12027545-12027564 MS.gene31665:intron 25.0%
!! TTCTGTTGTTTGTGTTAAAA+GGG - chr1.1:12027546-12027565 MS.gene31665:intron 25.0%
!! TTGCAAACATTTCTTTTTCT+TGG - chr1.1:12026126-12026145 MS.gene31665:intron 25.0%
!!! ATCTTTTAGGTTCAAGTAAT+TGG - chr1.1:12026817-12026836 MS.gene31665:intron 25.0%
!!! GATACTTTTTTATTTTTGCC+AGG - chr1.1:12028221-12028240 MS.gene31665:intron 25.0%
!!! GCCATATTTTTTATGATGAA+TGG - chr1.1:12027994-12028013 MS.gene31665:intron 25.0%
!!! TGGCTTGTTACTTTATAATA+TGG + chr1.1:12028674-12028693 None:intergenic 25.0%
!!! TGTGCTCTGAATTTATATTT+TGG + chr1.1:12026033-12026052 None:intergenic 25.0%
AAAAGACATAAGTCATTCAG+TGG + chr1.1:12028712-12028731 None:intergenic 30.0%
AAGGATAGAAAAAGTTAACC+AGG + chr1.1:12027248-12027267 None:intergenic 30.0%
ACAACTTGCCATAATATGTT+TGG - chr1.1:12025755-12025774 MS.gene31665:intron 30.0%
ACTTGAACCTAAAAGATGAA+GGG + chr1.1:12026814-12026833 None:intergenic 30.0%
AGTGGATCATGATGATTAAA+TGG + chr1.1:12028694-12028713 None:intergenic 30.0%
ATATATCAGGAACTGAGTAT+GGG + chr1.1:12028132-12028151 None:intergenic 30.0%
ATCTTTAATTATCCCATGGA+AGG - chr1.1:12028461-12028480 MS.gene31665:CDS 30.0%
ATGATAAGAAATGTGATGCT+CGG - chr1.1:12027721-12027740 MS.gene31665:CDS 30.0%
CAACTTGCCATAATATGTTT+GGG - chr1.1:12025756-12025775 MS.gene31665:intron 30.0%
CGTTGCAAAAAATATGCTTT+CGG - chr1.1:12027618-12027637 MS.gene31665:intron 30.0%
CTTGAACGAAAAACAAAGTT+TGG - chr1.1:12028630-12028649 MS.gene31665:CDS 30.0%
GAACTTCTTAACTAAATTGG+TGG - chr1.1:12027669-12027688 MS.gene31665:intron 30.0%
GGTAATCATTTCTTGAAGAA+CGG + chr1.1:12025649-12025668 None:intergenic 30.0%
GGTGAACTTCTTAACTAAAT+TGG - chr1.1:12027666-12027685 MS.gene31665:intron 30.0%
GTTGAACTTGAATTTCAATG+TGG - chr1.1:12026191-12026210 MS.gene31665:CDS 30.0%
TAAAACGTAAGATCTCTCTA+AGG + chr1.1:12025986-12026005 None:intergenic 30.0%
TAAAATTCATGTGGTTTCCT+TGG + chr1.1:12027310-12027329 None:intergenic 30.0%
TACTTGAACCTAAAAGATGA+AGG + chr1.1:12026815-12026834 None:intergenic 30.0%
TATATATCAGGAACTGAGTA+TGG + chr1.1:12028133-12028152 None:intergenic 30.0%
TCCATGGGATAATTAAAGAT+CGG + chr1.1:12028461-12028480 None:intergenic 30.0%
TGGTATACAACATTACAACT+TGG + chr1.1:12026779-12026798 None:intergenic 30.0%
! TCATATCTGCTTTCCTTTTT+GGG + chr1.1:12026859-12026878 None:intergenic 30.0%
! TTCATATCTGCTTTCCTTTT+TGG + chr1.1:12026860-12026879 None:intergenic 30.0%
! TTGGTTAATTTGGTCTGTTA+GGG + chr1.1:12026562-12026581 None:intergenic 30.0%
! TTTGGTTAATTTGGTCTGTT+AGG + chr1.1:12026563-12026582 None:intergenic 30.0%
!! AAATTTGTTATTGCCTCAGT+TGG - chr1.1:12026245-12026264 MS.gene31665:intron 30.0%
!! TATTTTGGACCCAATTGATA+AGG + chr1.1:12026018-12026037 None:intergenic 30.0%
AAAATCACACCTTATCATCC+TGG + chr1.1:12026410-12026429 None:intergenic 35.0%
AAATGAAAACTCAGAGGAAG+AGG - chr1.1:12025563-12025582 MS.gene31665:intron 35.0%
AAGCTCGATCATGTAATCAA+GGG + chr1.1:12026376-12026395 None:intergenic 35.0%
AAGCTCTCCCAAACATATTA+TGG + chr1.1:12025766-12025785 None:intergenic 35.0%
AATGTAAGGAGATGTTTGTG+TGG + chr1.1:12025370-12025389 None:intergenic 35.0%
ACCGATCTTTAATTATCCCA+TGG - chr1.1:12028457-12028476 MS.gene31665:intron 35.0%
ACTTGAAGATTCATATCCCA+GGG - chr1.1:12026929-12026948 MS.gene31665:intron 35.0%
AGTTAAATGCTATCTCCTGA+AGG + chr1.1:12028779-12028798 None:intergenic 35.0%
ATATATGCTGGATCTGACAA+TGG - chr1.1:12028255-12028274 MS.gene31665:intron 35.0%
ATATCCATATCTTCCAACTG+AGG + chr1.1:12026261-12026280 None:intergenic 35.0%
ATTTACAAGAGTTCAACCGT+TGG - chr1.1:12025716-12025735 MS.gene31665:intron 35.0%
CGAAATCAACATATCAAGAC+CGG + chr1.1:12026062-12026081 None:intergenic 35.0%
CTATATCTGAATTCTTGCCA+AGG - chr1.1:12027290-12027309 MS.gene31665:intron 35.0%
CTTAAAGAAGTTCCTTACCT+GGG + chr1.1:12026727-12026746 None:intergenic 35.0%
GAGGTAGAGTATATAATCCA+CGG + chr1.1:12027472-12027491 None:intergenic 35.0%
GATATTGCACTTGAAAGATG+CGG + chr1.1:12027184-12027203 None:intergenic 35.0%
GATGGAATCTGATTTCATGA+TGG - chr1.1:12026350-12026369 MS.gene31665:CDS 35.0%
GCTTCAACTTAAAACACTGT+TGG + chr1.1:12025431-12025450 None:intergenic 35.0%
TAACCGAAATGAAAACTCAG+AGG - chr1.1:12025557-12025576 MS.gene31665:intron 35.0%
TAGAGGTTCTCAATATTGGA+GGG - chr1.1:12027096-12027115 MS.gene31665:intron 35.0%
TCAGTTGGAAGATATGGATA+TGG - chr1.1:12026260-12026279 MS.gene31665:intron 35.0%
TCTAAATGACATAGCTAACC+AGG - chr1.1:12026957-12026976 MS.gene31665:intron 35.0%
TCTATGTAGAACTCCCAAAA+AGG - chr1.1:12026843-12026862 MS.gene31665:intron 35.0%
TCTGTAGAGGTTCTCAATAT+TGG - chr1.1:12027092-12027111 MS.gene31665:intron 35.0%
TGGATTATATACTCTACCTC+CGG - chr1.1:12027472-12027491 MS.gene31665:intron 35.0%
TTAAAGAAGTTCCTTACCTG+GGG + chr1.1:12026726-12026745 None:intergenic 35.0%
TTCGGCATCATTAAAACTGT+TGG - chr1.1:12027636-12027655 MS.gene31665:intron 35.0%
TTGTAGCTAGATGAAAATGC+AGG - chr1.1:12028598-12028617 MS.gene31665:CDS 35.0%
TTGTTTGTGTTAAAAGGGCT+TGG - chr1.1:12027551-12027570 MS.gene31665:intron 35.0%
! CATTTTCATCTAGCTACAAG+TGG + chr1.1:12028597-12028616 None:intergenic 35.0%
! CTTAAAACACTGTTGGTAAG+TGG + chr1.1:12025424-12025443 None:intergenic 35.0%
! CTTCCTCTGAGTTTTCATTT+CGG + chr1.1:12025563-12025582 None:intergenic 35.0%
! TAAGATCTCTCTAAGGAGTA+GGG + chr1.1:12025979-12025998 None:intergenic 35.0%
! TGCTAGGCTAAATCGTATTT+TGG + chr1.1:12026581-12026600 None:intergenic 35.0%
! TTGCGATTATTAAGCTTGCT+AGG + chr1.1:12026597-12026616 None:intergenic 35.0%
AAAGACACTTGAAGTCCTTC+AGG - chr1.1:12028761-12028780 MS.gene31665:CDS 40.0%
AAGTGGTATTTGTGGCAACA+TGG + chr1.1:12028580-12028599 None:intergenic 40.0%
AATTCAGAGCACAAGTAGTC+CGG - chr1.1:12026040-12026059 MS.gene31665:intron 40.0%
ACACTCCATTCCATTTGGAA+AGG - chr1.1:12026474-12026493 MS.gene31665:intron 40.0%
ACTTCTTCCAAGTTCTGTAG+AGG - chr1.1:12027079-12027098 MS.gene31665:intron 40.0%
ACTTGTCTGTCATGATATCC+AGG - chr1.1:12027896-12027915 MS.gene31665:intron 40.0%
AGAATCTGAGAAAGTAGCAG+TGG - chr1.1:12026287-12026306 MS.gene31665:intron 40.0%
ATTAAAACTGTTGGCAGTGC+AGG - chr1.1:12027645-12027664 MS.gene31665:intron 40.0%
ATTGCCTCAGTTGGAAGATA+TGG - chr1.1:12026254-12026273 MS.gene31665:intron 40.0%
ATTGTGTGATTACACGACTG+CGG - chr1.1:12026089-12026108 MS.gene31665:intron 40.0%
CAAGCTCGATCATGTAATCA+AGG + chr1.1:12026377-12026396 None:intergenic 40.0%
CATATATACCAGACAAGACC+TGG + chr1.1:12028242-12028261 None:intergenic 40.0%
CCAGGCTGATGATTTATTAG+AGG - chr1.1:12026975-12026994 MS.gene31665:intron 40.0%
CCTCTAATAAATCATCAGCC+TGG + chr1.1:12026978-12026997 None:intergenic 40.0%
CGGTTAAGAAGTTCGTTAAG+TGG + chr1.1:12025543-12025562 None:intergenic 40.0%
CTAGCTACAAGTGGTATTTG+TGG + chr1.1:12028588-12028607 None:intergenic 40.0%
CTTGAAGATTCATATCCCAG+GGG - chr1.1:12026930-12026949 MS.gene31665:intron 40.0%
GACTTGAAGATTCATATCCC+AGG - chr1.1:12026928-12026947 MS.gene31665:intron 40.0%
GCTTAAAGAAGTTCCTTACC+TGG + chr1.1:12026728-12026747 None:intergenic 40.0%
GTAGAGGTTCTCAATATTGG+AGG - chr1.1:12027095-12027114 MS.gene31665:intron 40.0%
GTCTTGTCTGGTATATATGC+TGG - chr1.1:12028243-12028262 MS.gene31665:intron 40.0%
GTTTCTCGAAACAGTCTCTA+AGG - chr1.1:12027962-12027981 MS.gene31665:intron 40.0%
TAGTTGGAGACCTTTCCAAA+TGG + chr1.1:12026487-12026506 None:intergenic 40.0%
TGAAAAGGACCAGGATGATA+AGG - chr1.1:12026398-12026417 MS.gene31665:CDS 40.0%
TGAACCTAAAAGATGAAGGG+AGG + chr1.1:12026811-12026830 None:intergenic 40.0%
TTATCCCATGGAAGGTAACT+AGG - chr1.1:12028469-12028488 MS.gene31665:CDS 40.0%
TTGAGAACCTCTACAGAACT+TGG + chr1.1:12027089-12027108 None:intergenic 40.0%
TTTCCAAATGGAATGGAGTG+TGG + chr1.1:12026475-12026494 None:intergenic 40.0%
TTTGATGAACCTGCAAGCAA+TGG + chr1.1:12028743-12028762 None:intergenic 40.0%
! AAATTGGTGGCCTTAAAACC+TGG - chr1.1:12027682-12027701 MS.gene31665:intron 40.0%
! AACTCCTCCCTTCATCTTTT+AGG - chr1.1:12026804-12026823 MS.gene31665:intron 40.0%
! AATTGGTGGCCTTAAAACCT+GGG - chr1.1:12027683-12027702 MS.gene31665:intron 40.0%
! CAACGTGAAGCACTTCTTAA+AGG - chr1.1:12025606-12025625 MS.gene31665:intron 40.0%
! CACAACTTTCCCAGGTTTTA+AGG + chr1.1:12027695-12027714 None:intergenic 40.0%
! GTAAGATCTCTCTAAGGAGT+AGG + chr1.1:12025980-12025999 None:intergenic 40.0%
! TGGTAAGAGAGTTGATCAGA+TGG - chr1.1:12026332-12026351 MS.gene31665:CDS 40.0%
!! TATTTTTGCCAGGTCTTGTC+TGG - chr1.1:12028231-12028250 MS.gene31665:intron 40.0%
!! TTAGAAAAGTGCTCGAGAAG+TGG + chr1.1:12026750-12026769 None:intergenic 40.0%
!! TTCAGTAGGATTTGCTGGAA+GGG - chr1.1:12027792-12027811 MS.gene31665:CDS 40.0%
!! TTTCAGTAGGATTTGCTGGA+AGG - chr1.1:12027791-12027810 MS.gene31665:CDS 40.0%
AAAACCTGGGAAAGTTGTGC+TGG - chr1.1:12027696-12027715 MS.gene31665:intron 45.0%
AACTAAAAAATGCCCACCCC+AGG - chr1.1:12026707-12026726 MS.gene31665:CDS 45.0%
AATCGCAACACACACATGCT+GGG - chr1.1:12026609-12026628 MS.gene31665:intron 45.0%
ACTGTTTCGAGAAACATGCC+CGG + chr1.1:12027957-12027976 None:intergenic 45.0%
AGAAGAAGCCCGTGATATGA+TGG - chr1.1:12027418-12027437 MS.gene31665:CDS 45.0%
AGCACCTAGTTACCTTCCAT+GGG + chr1.1:12028476-12028495 None:intergenic 45.0%
AGCGAAACGAGTTACGAAGT+TGG - chr1.1:12025507-12025526 MS.gene31665:intron 45.0%
AGGGTTTCAGTAGGATTTGC+TGG - chr1.1:12027787-12027806 MS.gene31665:CDS 45.0%
ATATCCAGCACAACTTTCCC+AGG + chr1.1:12027703-12027722 None:intergenic 45.0%
ATGAAGGGAGGAGTTCACAT+TGG + chr1.1:12026799-12026818 None:intergenic 45.0%
CAGATCGAAAACTGCTTGCA+AGG - chr1.1:12027381-12027400 MS.gene31665:intron 45.0%
CATCCACACTCCATTCCATT+TGG - chr1.1:12026469-12026488 MS.gene31665:intron 45.0%
GAAACGAGTTACGAAGTTGG+TGG - chr1.1:12025510-12025529 MS.gene31665:intron 45.0%
GAAGAAGCCCGTGATATGAT+GGG - chr1.1:12027419-12027438 MS.gene31665:CDS 45.0%
GAGATGTTTGTGTGGATAGC+GGG + chr1.1:12025362-12025381 None:intergenic 45.0%
GATGATGACAGGGTTTCAGT+AGG - chr1.1:12027778-12027797 MS.gene31665:CDS 45.0%
GGAGACCTTTCCAAATGGAA+TGG + chr1.1:12026482-12026501 None:intergenic 45.0%
GGAGATGTTTGTGTGGATAG+CGG + chr1.1:12025363-12025382 None:intergenic 45.0%
GTGATGCTCGGAAAAGATGA+AGG - chr1.1:12027733-12027752 MS.gene31665:CDS 45.0%
TAATCGCAACACACACATGC+TGG - chr1.1:12026608-12026627 MS.gene31665:intron 45.0%
TAGCACCTAGTTACCTTCCA+TGG + chr1.1:12028477-12028496 None:intergenic 45.0%
TCACATCAACATACCTCAGC+CGG + chr1.1:12027494-12027513 None:intergenic 45.0%
TCACTGCACAACATCTGGAA+TGG - chr1.1:12028280-12028299 MS.gene31665:intron 45.0%
TGAACCTGCAAGCAATGGAA+AGG + chr1.1:12028738-12028757 None:intergenic 45.0%
TGAGAAAGTAGCAGTGGAGT+TGG - chr1.1:12026293-12026312 MS.gene31665:intron 45.0%
TGGTATCACTGCACAACATC+TGG - chr1.1:12028275-12028294 MS.gene31665:intron 45.0%
TGTTCCTTTCCATTGCTTGC+AGG - chr1.1:12028731-12028750 MS.gene31665:CDS 45.0%
TTGGACGAAAGAAATGACCG+TGG - chr1.1:12027452-12027471 MS.gene31665:intron 45.0%
TTGGCTGCACAAGGAGTTAT+TGG - chr1.1:12026312-12026331 MS.gene31665:intron 45.0%
! AGTTTTCGATCTGGCACAAC+AGG + chr1.1:12027374-12027393 None:intergenic 45.0%
! ATGTCATTTAGATTCGCCCC+TGG + chr1.1:12026949-12026968 None:intergenic 45.0%
! CACTGCACAACATCTGGAAT+GGG - chr1.1:12028281-12028300 MS.gene31665:intron 45.0%
! CGTGAAGCACTTCTTAAAGG+TGG - chr1.1:12025609-12025628 MS.gene31665:intron 45.0%
! CTTGCAAGCAGTTTTCGATC+TGG + chr1.1:12027383-12027402 None:intergenic 45.0%
! GTGAGTTGAATTGGATGACG+TGG - chr1.1:12027814-12027833 MS.gene31665:CDS 45.0%
! TCAACTGGAAGTGCAAACAC+AGG + chr1.1:12028203-12028222 None:intergenic 45.0%
! TGGCAACGATGATGATGACA+GGG - chr1.1:12027768-12027787 MS.gene31665:CDS 45.0%
! TGTCATTTAGATTCGCCCCT+GGG + chr1.1:12026948-12026967 None:intergenic 45.0%
!! CAGAAGCTTTCTAAAACGCC+TGG - chr1.1:12027227-12027246 MS.gene31665:CDS 45.0%
!! CATGATCGAGCTTGCTGAAA+AGG - chr1.1:12026383-12026402 MS.gene31665:CDS 45.0%
!! GCTGGTGGCGGTTTATTTAA+AGG - chr1.1:12026898-12026917 MS.gene31665:intron 45.0%
!!! CAGGCGTTTTAGAAAGCTTC+TGG + chr1.1:12027229-12027248 None:intergenic 45.0%
AAAAATGCCCACCCCAGGTA+AGG - chr1.1:12026712-12026731 MS.gene31665:CDS 50.0%
AAGAAGTTCCTTACCTGGGG+TGG + chr1.1:12026723-12026742 None:intergenic 50.0%
AGAAGTTCCTTACCTGGGGT+GGG + chr1.1:12026722-12026741 None:intergenic 50.0%
AGTGCAAACACAGGCAGAGA+AGG + chr1.1:12028194-12028213 None:intergenic 50.0%
ATATACTCTACCTCCGGCTG+AGG - chr1.1:12027478-12027497 MS.gene31665:intron 50.0%
CTAAGGAGTAGGGTCATGTC+TGG + chr1.1:12025969-12025988 None:intergenic 50.0%
CTGTTTCGAGAAACATGCCC+GGG + chr1.1:12027956-12027975 None:intergenic 50.0%
GATATCCAGGCAAGTGTGAC+AGG - chr1.1:12027909-12027928 MS.gene31665:intron 50.0%
TTCGTAACTCGTTTCGCTGC+TGG + chr1.1:12025505-12025524 None:intergenic 50.0%
! AAGCCCGTGATATGATGGGA+GGG - chr1.1:12027423-12027442 MS.gene31665:CDS 50.0%
! CTGGCAACGATGATGATGAC+AGG - chr1.1:12027767-12027786 MS.gene31665:CDS 50.0%
! GATGAAGGTGCAGACAACAC+TGG - chr1.1:12027748-12027767 MS.gene31665:CDS 50.0%
! GCTGGAAGGGTGAGTTGAAT+TGG - chr1.1:12027805-12027824 MS.gene31665:CDS 50.0%
!! ACGAGTTACGAAGTTGGTGG+TGG - chr1.1:12025513-12025532 MS.gene31665:intron 50.0%
!! TATGATGGGAGGGGGGATTT+TGG - chr1.1:12027433-12027452 MS.gene31665:CDS 50.0%
CATCAACATACCTCAGCCGG+AGG + chr1.1:12027491-12027510 None:intergenic 55.0%
GATGCAGCGCAAGTCACTGT+TGG - chr1.1:12026653-12026672 MS.gene31665:CDS 55.0%
TCCAGGCAAGTGTGACAGGA+CGG - chr1.1:12027913-12027932 MS.gene31665:intron 55.0%
TCCCCCCTCCCATCATATCA+CGG + chr1.1:12027430-12027449 None:intergenic 55.0%
TTGTTACGCCGAGTTGCAGC+TGG - chr1.1:12026880-12026899 MS.gene31665:intron 55.0%
! AGCCCGTGATATGATGGGAG+GGG - chr1.1:12027424-12027443 MS.gene31665:CDS 55.0%
! GAAGCCCGTGATATGATGGG+AGG - chr1.1:12027422-12027441 MS.gene31665:CDS 55.0%
!! CGAGCTTGCTGAAAAGGACC+AGG - chr1.1:12026389-12026408 MS.gene31665:CDS 55.0%
AACCGCCACCAGCTGCAACT+CGG + chr1.1:12026891-12026910 None:intergenic 60.0%
AAGCCACATCCTGTACGCCC+GGG - chr1.1:12027936-12027955 MS.gene31665:intron 60.0%
AGAAACATGCCCGGGCGTAC+AGG + chr1.1:12027948-12027967 None:intergenic 60.0%
CCCCCCTCCCATCATATCAC+GGG + chr1.1:12027429-12027448 None:intergenic 60.0%
GAAGCCACATCCTGTACGCC+CGG - chr1.1:12027935-12027954 MS.gene31665:intron 60.0%
GCAGTGGAGTTGGCTGCACA+AGG - chr1.1:12026303-12026322 MS.gene31665:intron 60.0%
TCCGTCCTGTCACACTTGCC+TGG + chr1.1:12027917-12027936 None:intergenic 60.0%
TTACGCCGAGTTGCAGCTGG+TGG - chr1.1:12026883-12026902 MS.gene31665:intron 60.0%
! CCCGTGATATGATGGGAGGG+GGG - chr1.1:12027426-12027445 MS.gene31665:CDS 60.0%
! GCCCGTGATATGATGGGAGG+GGG - chr1.1:12027425-12027444 MS.gene31665:CDS 60.0%
ATGCCCGGGCGTACAGGATG+TGG + chr1.1:12027942-12027961 None:intergenic 65.0%
CGCCGAGTTGCAGCTGGTGG+CGG - chr1.1:12026886-12026905 MS.gene31665:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 12025330 12028800 12025330 ID=MS.gene31665
chr1.1 mRNA 12025330 12028800 12025330 ID=MS.gene31665.t1;Parent=MS.gene31665
chr1.1 exon 12028459 12028800 12028459 ID=MS.gene31665.t1.exon1;Parent=MS.gene31665.t1
chr1.1 CDS 12028459 12028800 12028459 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12027711 12027866 12027711 ID=MS.gene31665.t1.exon2;Parent=MS.gene31665.t1
chr1.1 CDS 12027711 12027866 12027711 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12027402 12027470 12027402 ID=MS.gene31665.t1.exon3;Parent=MS.gene31665.t1
chr1.1 CDS 12027402 12027470 12027402 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12027134 12027304 12027134 ID=MS.gene31665.t1.exon4;Parent=MS.gene31665.t1
chr1.1 CDS 12027134 12027304 12027134 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12026631 12026774 12026631 ID=MS.gene31665.t1.exon5;Parent=MS.gene31665.t1
chr1.1 CDS 12026631 12026774 12026631 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12026317 12026463 12026317 ID=MS.gene31665.t1.exon6;Parent=MS.gene31665.t1
chr1.1 CDS 12026317 12026463 12026317 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12026147 12026212 12026147 ID=MS.gene31665.t1.exon7;Parent=MS.gene31665.t1
chr1.1 CDS 12026147 12026212 12026147 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12025828 12025887 12025828 ID=MS.gene31665.t1.exon8;Parent=MS.gene31665.t1
chr1.1 CDS 12025828 12025887 12025828 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
chr1.1 exon 12025330 12025377 12025330 ID=MS.gene31665.t1.exon9;Parent=MS.gene31665.t1
chr1.1 CDS 12025330 12025377 12025330 ID=cds.MS.gene31665.t1;Parent=MS.gene31665.t1
Gene Sequence

>MS.gene31665

ATGTTTGGCACTTCTTCTTCAATCTTGTTCCCGCTATCCACACAAACATCTCCTTACATTTTTCATTCATGTTTTCCAAATTTAACAACTTCCACTTACCAACAGTGTTTTAAGTTGAAGCAGAATCTGTTAAAAGTTAAAAAGAAGAATAGATTAATTGTGTTAAGCAGCACCAGCAGCGAAACGAGTTACGAAGTTGGTGGTGGATTTCCACTTAACGAACTTCTTAACCGAAATGAAAACTCAGAGGAAGAGGATACTTCTGATACATCTGCTCAACGTGAAGCACTTCTTAAAGGTGGTGATCAAGTTATCTCCGTTCTTCAAGAAATGATTACCCTTGTAAGTTATTTTACTTGAATGACTTATTTGAGCTTATGAGAGTAATTTACAAGAGTTCAACCGTTGGAGAAATTGAATTCAAAACAACTTGCCATAATATGTTTGGGAGAGCTTATGAGAGTAACTTTTGACATGTCAATAAGTTGTTTTCAACTTATTTCTATAAGCTCTCAAGTATATCTTGTAAAAACAACTTATAACTTATAAGAAAACAATTTTACTTAATTTTATTTTGTTATACAAATAGCTTATATACAAACACTTAAATGATAAGTGCTTAATTGAACAATTTAACCAGACATGACCCTACTCCTTAGAGAGATCTTACGTTTTAAAAGAATGTCCTTATCAATTGGGTCCAAAATATAAATTCAGAGCACAAGTAGTCCGGTCTTGATATGTTGATTTCGATCTGCAATTGTGTGATTACACGACTGCGGTGTGCAATTTTTCCTTGCAAACATTTCTTTTTCTTGGTCATGTCTATGTATTTTTCTTTCAGCATTTGCATGATAAGTTGTTGAACTTGAATTTCAATGTGGAACGTGTTGCTAACCACTATGTTACATGTATAAATTTGTTATTGCCTCAGTTGGAAGATATGGATATGGATGAAGAATCTGAGAAAGTAGCAGTGGAGTTGGCTGCACAAGGAGTTATTGGTAAGAGAGTTGATCAGATGGAATCTGATTTCATGATGGCCCTTGATTACATGATCGAGCTTGCTGAAAAGGACCAGGATGATAAGGTGTGATTTTCAGACTAAAGTTTAAAACTTGTTGTATTATACATAGAATCATCCACACTCCATTCCATTTGGAAAGGTCTCCAACTATAATCTATTACAATCTACATTTGGATTCATTTGTAACAACTCTAAATCAAAGCCCTAACAGACCAAATTAACCAAAATACGATTTAGCCTAGCAAGCTTAATAATCGCAACACACACATGCTGGGACCTAACTGTGCATATATTTTGATGCAGCGCAAGTCACTGTTGGAAGTTATCAAAGAGACAGTATTATCACATCTAACTAAAAAATGCCCACCCCAGGTAAGGAACTTCTTTAAGCCACTTCTCGAGCACTTTTCTAATTAGTTCCAAGTTGTAATGTTGTATACCAATGTGAACTCCTCCCTTCATCTTTTAGGTTCAAGTAATTGGTCTTCTATGTAGAACTCCCAAAAAGGAAAGCAGATATGAATTGTTACGCCGAGTTGCAGCTGGTGGCGGTTTATTTAAAGGTGAGAATGACTTGAAGATTCATATCCCAGGGGCGAATCTAAATGACATAGCTAACCAGGCTGATGATTTATTAGAGGTATTGATACAAACTTCAAGTATTATATGAATTACAATGTCCTTCATACAGTTGTTTAATCATTAAAATGACTTGTACTAATACTTCTTCCAAGTTCTGTAGAGGTTCTCAATATTGGAGGGCTCACTCATAGTTTTATTAATTTTTGTTTTCTATTTATTTCTTTTTCTGTGAAAAATTATTTCCGCATCTTTCAAGTGCAATATCTTTTTTTTTTTTGTTCAATCTTCCAGAAGCTTTCTAAAACGCCTGGTTAACTTTTTCTATCCTTTCAATTGAGTGATAAATATTTGCTATATCTGAATTCTTGCCAAGGAAACCACATGAATTTTAAACACTGTTTGATTAATTGTTTACAGACAATGGAAACTCGTCCTGTTGTGCCAGATCGAAAACTGCTTGCAAGGCTTGTTTTGATTAGAGAAGAAGCCCGTGATATGATGGGAGGGGGGATTTTGGACGAAAGAAATGACCGTGGATTATATACTCTACCTCCGGCTGAGGTATGTTGATGTGAAGTATGCATATTTTATTTTCAGTTTCACACAATTCTGTTGTTTGTGTTAAAAGGGCTTGGAAATTTCCACTAGATATGTATAGATTTAAAACTAAATGGTTATTCGTTGCAAAAAATATGCTTTCGGCATCATTAAAACTGTTGGCAGTGCAGGTGAACTTCTTAACTAAATTGGTGGCCTTAAAACCTGGGAAAGTTGTGCTGGATATGATAAGAAATGTGATGCTCGGAAAAGATGAAGGTGCAGACAACACTGGCAACGATGATGATGACAGGGTTTCAGTAGGATTTGCTGGAAGGGTGAGTTGAATTGGATGACGTGGATAATTTAACATGTGAATGTGTTTTACATGCATTCAATTTATAGTCAACAGCATATTTAACTTGTCTGTCATGATATCCAGGCAAGTGTGACAGGACGGAAGCCACATCCTGTACGCCCGGGCATGTTTCTCGAAACAGTCTCTAAGGTAATGTTATGCCATATTTTTTATGATGAATGGTTATCTTTGAAGCAATGTAGCCTGAGAATTAACATATAATTGTAAAATACTTGGTTCAGTTGAAAATTTCACTCTATTGGGAATCCAAACTGTTTTACTTTGATAACTTTTTCCCATACTCAGTTCCTGATATATATCCTGATTATTACTCTATCATACAGTAGATTTGAATGACCTTCTCTGCCTGTGTTTGCACTTCCAGTTGATACTTTTTTATTTTTGCCAGGTCTTGTCTGGTATATATGCTGGATCTGACAATGGTATCACTGCACAACATCTGGAATGGGTAAATTCTTTCACACTTTACCAAATCCATAAATGTTTCTATTTTCAAAATAACGTGCATACATTAGCCTGTCATAAATATCTATTTCTAATTTTATGCATAAGCTTCTTTAAAGTTGTCATGTTATCTCTATTTTTCATTTGAAAATTGATTAACCGATCTTTAATTATCCCATGGAAGGTAACTAGGTGCTAAATCAGTCAGCTAAAAGTTATTATTTTTTCTTCTCTATTGTTTCTTCATGTTATATTTGGTGTTTATTATGATCTTTAAACCATGTTGCCACAAATACCACTTGTAGCTAGATGAAAATGCAGGTTTAACAAACTTGAACGAAAAACAAAGTTTGGCGTTTAAGCATACACTCACCATATTATAAAGTAACAAGCCATTTAATCATCATGATCCACTGAATGACTTATGTCTTTTGTTCCTTTCCATTGCTTGCAGGTTCATCAAAAGACACTTGAAGTCCTTCAGGAGATAGCATTTAACTAG

Protein sequence

>MS.gene31665.t1

MFGTSSSILFPLSTQTSPYIFHSCFPNLTTSTYQQCFKLKQNLLKVKKKNRLIVLSSTSSETSYEVGGGFPLNELLNRNENSEEEDTSDTSAQREALLKGGDQVISVLQEMITLLEDMDMDEESEKVAVELAAQGVIGKRVDQMESDFMMALDYMIELAEKDQDDKRKSLLEVIKETVLSHLTKKCPPQVQVIGLLCRTPKKESRYELLRRVAAGGGLFKGENDLKIHIPGANLNDIANQADDLLETMETRPVVPDRKLLARLVLIREEARDMMGGGILDERNDRGLYTLPPAEVNFLTKLVALKPGKVVLDMIRNVMLGKDEGADNTGNDDDDRVSVGFAGRASVTGRKPHPVRPGMFLETVSKVLSGIYAGSDNGITAQHLEWVHQKTLEVLQEIAFN