Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32262.t1 | XP_013445165.1 | 93.2 | 235 | 16 | 0 | 1 | 235 | 1 | 235 | 1.50E-107 | 399.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32262.t1 | Q9LH79 | 65.2 | 233 | 76 | 3 | 4 | 234 | 6 | 235 | 8.2e-75 | 281.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32262.t1 | G7ZV40 | 93.2 | 235 | 16 | 0 | 1 | 235 | 1 | 235 | 1.1e-107 | 399.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene32262 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene32262 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene050611 | MS.gene32262 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene051207 | MS.gene32262 | 0.800433 | 1.44E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene32262 | 0.803454 | 3.46E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene32262 | 0.814393 | 1.58E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene32262 | 0.824247 | 8.95E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene32262 | 0.809339 | 1.99E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene32262 | 0.81125 | 7.69E-51 | -1.69E-46 |
| MS.gene052208 | MS.gene32262 | 0.831746 | 1.40E-55 | -1.69E-46 |
| MS.gene052447 | MS.gene32262 | 0.835173 | 1.96E-56 | -1.69E-46 |
| MS.gene052488 | MS.gene32262 | 0.808006 | 3.83E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene32262 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene052843 | MS.gene32262 | 0.810992 | 8.75E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene32262 | -0.815268 | 1.01E-51 | -1.69E-46 |
| MS.gene053201 | MS.gene32262 | 0.807949 | 3.94E-50 | -1.69E-46 |
| MS.gene053646 | MS.gene32262 | 0.810922 | 9.06E-51 | -1.69E-46 |
| MS.gene053883 | MS.gene32262 | 0.812927 | 3.31E-51 | -1.69E-46 |
| MS.gene053974 | MS.gene32262 | 0.820995 | 5.11E-53 | -1.69E-46 |
| MS.gene053998 | MS.gene32262 | 0.80177 | 7.70E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene32262 | 0.809071 | 2.27E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene32262 | 0.829285 | 5.61E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene32262 | -0.830946 | 2.21E-55 | -1.69E-46 |
| MS.gene055357 | MS.gene32262 | 0.834388 | 3.09E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene32262 | 0.816173 | 6.34E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene32262 | 0.807637 | 4.59E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene32262 | 0.80445 | 2.15E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene32262 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene32262 | 0.829413 | 5.22E-55 | -1.69E-46 |
| MS.gene057060 | MS.gene32262 | 0.819867 | 9.27E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene32262 | 0.815309 | 9.87E-52 | -1.69E-46 |
| MS.gene058294 | MS.gene32262 | 0.816734 | 4.75E-52 | -1.69E-46 |
| MS.gene059459 | MS.gene32262 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene32262 | 0.832145 | 1.12E-55 | -1.69E-46 |
| MS.gene060137 | MS.gene32262 | -0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene060521 | MS.gene32262 | 0.806722 | 7.17E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene32262 | -0.818928 | 1.52E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32262.t1 | MTR_8g042490 | 94.894 | 235 | 12 | 0 | 1 | 235 | 1 | 235 | 8.63e-160 | 442 |
| MS.gene32262.t1 | MTR_2g073190 | 75.745 | 235 | 56 | 1 | 1 | 234 | 1 | 235 | 5.64e-124 | 367 |
| MS.gene32262.t1 | MTR_1g029380 | 46.667 | 210 | 112 | 0 | 18 | 227 | 9 | 218 | 8.83e-64 | 199 |
| MS.gene32262.t1 | MTR_3g089125 | 47.418 | 213 | 111 | 1 | 18 | 229 | 9 | 221 | 9.58e-63 | 196 |
| MS.gene32262.t1 | MTR_3g080990 | 43.379 | 219 | 122 | 2 | 8 | 224 | 2 | 220 | 7.25e-53 | 171 |
| MS.gene32262.t1 | MTR_6g007633 | 39.367 | 221 | 128 | 3 | 14 | 228 | 8 | 228 | 2.36e-49 | 162 |
| MS.gene32262.t1 | MTR_1g028460 | 39.437 | 213 | 126 | 2 | 9 | 218 | 1 | 213 | 4.97e-49 | 161 |
| MS.gene32262.t1 | MTR_3g090940 | 37.500 | 216 | 132 | 2 | 16 | 228 | 8 | 223 | 8.09e-48 | 158 |
| MS.gene32262.t1 | MTR_3g090950 | 37.500 | 216 | 132 | 2 | 16 | 228 | 8 | 223 | 6.56e-47 | 156 |
| MS.gene32262.t1 | MTR_6g007637 | 40.278 | 216 | 125 | 3 | 10 | 222 | 5 | 219 | 8.58e-47 | 155 |
| MS.gene32262.t1 | MTR_8g099730 | 38.605 | 215 | 130 | 2 | 10 | 222 | 14 | 228 | 4.29e-46 | 154 |
| MS.gene32262.t1 | MTR_6g007623 | 38.117 | 223 | 130 | 4 | 14 | 229 | 5 | 226 | 1.69e-43 | 147 |
| MS.gene32262.t1 | MTR_2g007890 | 35.000 | 220 | 137 | 3 | 16 | 233 | 14 | 229 | 3.33e-40 | 140 |
| MS.gene32262.t1 | MTR_5g067530 | 37.674 | 215 | 130 | 3 | 18 | 230 | 14 | 226 | 3.71e-40 | 139 |
| MS.gene32262.t1 | MTR_8g096320 | 38.164 | 207 | 124 | 3 | 18 | 222 | 13 | 217 | 3.99e-40 | 139 |
| MS.gene32262.t1 | MTR_6g034600 | 62.602 | 123 | 34 | 2 | 113 | 235 | 1 | 111 | 2.31e-39 | 132 |
| MS.gene32262.t1 | MTR_2g436310 | 40.654 | 214 | 116 | 4 | 18 | 226 | 9 | 216 | 8.23e-38 | 132 |
| MS.gene32262.t1 | MTR_3g098910 | 36.493 | 211 | 126 | 3 | 16 | 222 | 11 | 217 | 2.42e-37 | 133 |
| MS.gene32262.t1 | MTR_7g007490 | 36.744 | 215 | 130 | 3 | 18 | 228 | 14 | 226 | 2.55e-37 | 131 |
| MS.gene32262.t1 | MTR_7g405710 | 39.070 | 215 | 128 | 2 | 16 | 229 | 11 | 223 | 5.09e-36 | 129 |
| MS.gene32262.t1 | MTR_4g106990 | 36.364 | 198 | 124 | 2 | 34 | 229 | 35 | 232 | 5.23e-36 | 127 |
| MS.gene32262.t1 | MTR_5g092600 | 35.961 | 203 | 127 | 2 | 23 | 224 | 18 | 218 | 6.19e-36 | 127 |
| MS.gene32262.t1 | MTR_6g007610 | 34.052 | 232 | 135 | 4 | 12 | 228 | 6 | 234 | 1.05e-34 | 124 |
| MS.gene32262.t1 | MTR_7g405730 | 39.216 | 204 | 121 | 2 | 18 | 220 | 13 | 214 | 6.85e-34 | 123 |
| MS.gene32262.t1 | MTR_8g096310 | 31.944 | 216 | 140 | 4 | 18 | 229 | 13 | 225 | 4.31e-33 | 121 |
| MS.gene32262.t1 | MTR_3g098930 | 36.667 | 180 | 113 | 1 | 18 | 197 | 14 | 192 | 1.45e-30 | 112 |
| MS.gene32262.t1 | MTR_8g099730 | 37.736 | 159 | 97 | 2 | 66 | 222 | 6 | 164 | 2.56e-28 | 106 |
| MS.gene32262.t1 | MTR_8g096320 | 38.926 | 149 | 88 | 2 | 76 | 222 | 15 | 162 | 3.52e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32262.t1 | AT3G14770 | 66.524 | 233 | 73 | 3 | 4 | 234 | 6 | 235 | 2.06e-104 | 301 |
| MS.gene32262.t1 | AT1G21460 | 45.498 | 211 | 115 | 0 | 18 | 228 | 9 | 219 | 6.29e-63 | 197 |
| MS.gene32262.t1 | AT1G21460 | 44.444 | 189 | 105 | 0 | 11 | 199 | 2 | 190 | 1.17e-51 | 166 |
| MS.gene32262.t1 | AT5G62850 | 38.636 | 220 | 133 | 2 | 11 | 228 | 5 | 224 | 4.20e-51 | 166 |
| MS.gene32262.t1 | AT4G10850 | 40.807 | 223 | 124 | 4 | 14 | 229 | 10 | 231 | 1.24e-49 | 163 |
| MS.gene32262.t1 | AT5G53190 | 39.713 | 209 | 123 | 2 | 18 | 223 | 10 | 218 | 1.21e-48 | 160 |
| MS.gene32262.t1 | AT1G66770 | 40.845 | 213 | 121 | 3 | 14 | 222 | 10 | 221 | 3.65e-46 | 154 |
| MS.gene32262.t1 | AT5G13170 | 38.389 | 211 | 126 | 2 | 18 | 226 | 15 | 223 | 9.64e-45 | 152 |
| MS.gene32262.t1 | AT5G40260 | 36.866 | 217 | 132 | 4 | 18 | 229 | 12 | 228 | 1.43e-42 | 144 |
| MS.gene32262.t1 | AT5G23660 | 39.409 | 203 | 120 | 2 | 18 | 219 | 15 | 215 | 5.75e-42 | 144 |
| MS.gene32262.t1 | AT3G48740 | 37.727 | 220 | 131 | 3 | 1 | 219 | 1 | 215 | 9.84e-42 | 144 |
| MS.gene32262.t1 | AT3G28007 | 40.654 | 214 | 123 | 4 | 11 | 221 | 5 | 217 | 2.47e-41 | 142 |
| MS.gene32262.t1 | AT5G50800 | 37.557 | 221 | 131 | 4 | 18 | 233 | 13 | 231 | 1.03e-40 | 141 |
| MS.gene32262.t1 | AT4G25010 | 39.640 | 222 | 126 | 5 | 18 | 233 | 13 | 232 | 1.45e-40 | 140 |
| MS.gene32262.t1 | AT4G15920 | 38.164 | 207 | 124 | 2 | 18 | 222 | 9 | 213 | 1.61e-40 | 139 |
| MS.gene32262.t1 | AT5G62850 | 37.368 | 190 | 118 | 1 | 11 | 199 | 5 | 194 | 1.54e-39 | 136 |
| MS.gene32262.t1 | AT2G39060 | 36.364 | 209 | 130 | 2 | 18 | 225 | 13 | 219 | 8.14e-39 | 135 |
| MS.gene32262.t1 | AT3G16690 | 36.058 | 208 | 127 | 4 | 18 | 222 | 9 | 213 | 3.04e-36 | 128 |
| MS.gene32262.t1 | AT5G50790 | 37.383 | 214 | 129 | 3 | 18 | 229 | 13 | 223 | 3.66e-36 | 129 |
| MS.gene32262.t1 | AT3G16690 | 35.484 | 217 | 128 | 5 | 18 | 231 | 44 | 251 | 4.50e-36 | 128 |
| MS.gene32262.t1 | AT5G40260 | 36.747 | 166 | 102 | 2 | 18 | 180 | 12 | 177 | 6.94e-32 | 116 |
| MS.gene32262.t1 | AT3G16690 | 31.206 | 141 | 91 | 4 | 18 | 155 | 9 | 146 | 2.17e-14 | 69.7 |
Find 40 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATCTCCTTCTTTCTTTA+TGG | 0.094340 | 8.3:+48733434 | MS.gene32262:CDS |
| GCTTACTCCATTTGTGAAAT+TGG | 0.125093 | 8.3:+48732501 | MS.gene32262:CDS |
| TGAATTGTAGACCCACATTT+AGG | 0.279401 | 8.3:+48732777 | MS.gene32262:intron |
| GTAGGTAATATCTTTGCATT+TGG | 0.325780 | 8.3:+48732642 | MS.gene32262:intron |
| TATATCACTTGATAATTTGT+TGG | 0.334698 | 8.3:+48732898 | MS.gene32262:CDS |
| GTTACCACTGTTAATTCAAT+TGG | 0.337932 | 8.3:+48732920 | MS.gene32262:CDS |
| TTTAGGAGAATTATGAGAAA+TGG | 0.341950 | 8.3:+48732794 | MS.gene32262:CDS |
| TTCAATACAGAATAAATATA+TGG | 0.362572 | 8.3:-48732842 | None:intergenic |
| TAGGTAATATCTTTGCATTT+GGG | 0.393033 | 8.3:+48732643 | MS.gene32262:intron |
| TGAACTGTTTGATCTGTTTG+TGG | 0.395153 | 8.3:+48732861 | MS.gene32262:CDS |
| TTGATTTGTTAGGTACCAAA+TGG | 0.416862 | 8.3:+48733594 | MS.gene32262:intron |
| AAAGATGCAGCTGGAATTGC+TGG | 0.429368 | 8.3:+48732525 | MS.gene32262:CDS |
| AAATGGGATAGGTACTGTTC+TGG | 0.436030 | 8.3:+48733611 | MS.gene32262:CDS |
| ATCTTTACCAATTTCACAAA+TGG | 0.440430 | 8.3:-48732508 | None:intergenic |
| TTAGGAGAATTATGAGAAAT+GGG | 0.442641 | 8.3:+48732795 | MS.gene32262:CDS |
| GAGAATGATTGGATTATTGC+TGG | 0.448517 | 8.3:+48733107 | MS.gene32262:CDS |
| GGGTCAACAGAAATGTTCTC+TGG | 0.465035 | 8.3:+48732815 | MS.gene32262:CDS |
| TGTTTGATCTGTTTGTGGTA+TGG | 0.483763 | 8.3:+48732866 | MS.gene32262:CDS |
| TCTCATAATTCTCCTAAATG+TGG | 0.499347 | 8.3:-48732789 | None:intergenic |
| AATGGGATAGGTACTGTTCT+GGG | 0.502068 | 8.3:+48733612 | MS.gene32262:CDS |
| AAATTATCAAGTGATATAAG+AGG | 0.509598 | 8.3:-48732893 | None:intergenic |
| AGAACAGTACCTATCCCATT+TGG | 0.512492 | 8.3:-48733609 | None:intergenic |
| TGATTTGTTAGGTACCAAAT+GGG | 0.514371 | 8.3:+48733595 | MS.gene32262:intron |
| CTCATAATTCTCCTAAATGT+GGG | 0.519009 | 8.3:-48732788 | None:intergenic |
| GTCGAAAGCGAAAGATAAAA+CGG | 0.522437 | 8.3:-48733401 | None:intergenic |
| GAAGGAGATGCTCATTAAGA+AGG | 0.533630 | 8.3:-48733423 | None:intergenic |
| TCAAGCATCCGACTAACATT+CGG | 0.541780 | 8.3:-48733194 | None:intergenic |
| TATTTGTGATCATACTAGTC+GGG | 0.546736 | 8.3:+48733142 | MS.gene32262:CDS |
| GAGTAATCCATAAAGAAAGA+AGG | 0.551073 | 8.3:-48733441 | None:intergenic |
| TTATCCATACGACACTATCA+AGG | 0.565472 | 8.3:-48733697 | None:intergenic |
| TGTTAGGTACCAAATGGGAT+AGG | 0.566157 | 8.3:+48733600 | MS.gene32262:intron |
| CATTCGGCGCATAGAACTAT+CGG | 0.567063 | 8.3:-48733178 | None:intergenic |
| GAAATTGGTAAAGATGCAGC+TGG | 0.580425 | 8.3:+48732516 | MS.gene32262:CDS |
| GAACCCTTGATAGTGTCGTA+TGG | 0.586423 | 8.3:+48733693 | MS.gene32262:CDS |
| ATATTTGTGATCATACTAGT+CGG | 0.590837 | 8.3:+48733141 | MS.gene32262:CDS |
| TCTATGCGCCGAATGTTAGT+CGG | 0.595174 | 8.3:+48733186 | MS.gene32262:CDS |
| AAACTTACGATTATAAACAA+TGG | 0.620280 | 8.3:-48733249 | None:intergenic |
| TACGATTATAAACAATGGAG+AGG | 0.620571 | 8.3:-48733244 | None:intergenic |
| TATCCATACGACACTATCAA+GGG | 0.638241 | 8.3:-48733696 | None:intergenic |
| TGCTCCAATTGAATTAACAG+TGG | 0.678257 | 8.3:-48732924 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCTAATACTATATA+TGG | + | chr8.3:48733006-48733025 | MS.gene32262:intron | 10.0% |
| !! | ATAAAATCATTGAAAATTAG+AGG | - | chr8.3:48732565-48732584 | None:intergenic | 15.0% |
| !! | TTCAATACAGAATAAATATA+TGG | - | chr8.3:48732845-48732864 | None:intergenic | 15.0% |
| !!! | AAAATTTCATGTATATCTTT+TGG | + | chr8.3:48732733-48732752 | MS.gene32262:intron | 15.0% |
| !!! | ATATCTTTTGGTTATTAATT+TGG | + | chr8.3:48732745-48732764 | MS.gene32262:intron | 15.0% |
| !!! | ATTAGAAAAATAACCTTTTT+TGG | - | chr8.3:48732998-48733017 | None:intergenic | 15.0% |
| !! | AAACTTACGATTATAAACAA+TGG | - | chr8.3:48733252-48733271 | None:intergenic | 20.0% |
| !! | AAATGTAGGTATACAAATAT+AGG | - | chr8.3:48733569-48733588 | None:intergenic | 20.0% |
| !! | AAATTATCAAGTGATATAAG+AGG | - | chr8.3:48732896-48732915 | None:intergenic | 20.0% |
| !! | CTATATAATTTCACAGAAAT+TGG | + | chr8.3:48733349-48733368 | MS.gene32262:intron | 20.0% |
| !! | TTATGATAAATTTCTTCACA+TGG | + | chr8.3:48733034-48733053 | MS.gene32262:intron | 20.0% |
| !!! | AAACTTTAAGAAACTTACAT+TGG | - | chr8.3:48732681-48732700 | None:intergenic | 20.0% |
| !!! | GAATTCAGATTTTATTTTGT+TGG | + | chr8.3:48733543-48733562 | MS.gene32262:intron | 20.0% |
| !!! | TATATCACTTGATAATTTGT+TGG | + | chr8.3:48732898-48732917 | MS.gene32262:CDS | 20.0% |
| ! | ACAAATCAAACACAAAATGT+AGG | - | chr8.3:48733583-48733602 | None:intergenic | 25.0% |
| ! | ATATTTGTGATCATACTAGT+CGG | + | chr8.3:48733141-48733160 | MS.gene32262:CDS | 25.0% |
| ! | ATCTTTACCAATTTCACAAA+TGG | - | chr8.3:48732511-48732530 | None:intergenic | 25.0% |
| ! | ATTCTTGCTTGTTTATTTGT+AGG | + | chr8.3:48732624-48732643 | MS.gene32262:intron | 25.0% |
| ! | TAGGTAATATCTTTGCATTT+GGG | + | chr8.3:48732643-48732662 | MS.gene32262:intron | 25.0% |
| ! | TAGTAAAACTCAGTATAACA+TGG | - | chr8.3:48733292-48733311 | None:intergenic | 25.0% |
| ! | TTAGGAGAATTATGAGAAAT+GGG | + | chr8.3:48732795-48732814 | MS.gene32262:CDS | 25.0% |
| ! | TTTAGGAGAATTATGAGAAA+TGG | + | chr8.3:48732794-48732813 | MS.gene32262:CDS | 25.0% |
| !! | ATTGTCTACTTCTTTTTGAT+AGG | + | chr8.3:48733083-48733102 | MS.gene32262:intron | 25.0% |
| !!! | CATTTTGTGTTTGATTTGTT+AGG | + | chr8.3:48733584-48733603 | MS.gene32262:intron | 25.0% |
| AGTTTGTGTAAATTCAAGCT+TGG | + | chr8.3:48733311-48733330 | MS.gene32262:intron | 30.0% | |
| CTCATAATTCTCCTAAATGT+GGG | - | chr8.3:48732791-48732810 | None:intergenic | 30.0% | |
| GAGTAATCCATAAAGAAAGA+AGG | - | chr8.3:48733444-48733463 | None:intergenic | 30.0% | |
| GTAGGTAATATCTTTGCATT+TGG | + | chr8.3:48732642-48732661 | MS.gene32262:intron | 30.0% | |
| GTTACCACTGTTAATTCAAT+TGG | + | chr8.3:48732920-48732939 | MS.gene32262:CDS | 30.0% | |
| TACGATTATAAACAATGGAG+AGG | - | chr8.3:48733247-48733266 | None:intergenic | 30.0% | |
| TATTTGTGATCATACTAGTC+GGG | + | chr8.3:48733142-48733161 | MS.gene32262:CDS | 30.0% | |
| TCAGTATAACATGGATATCT+AGG | - | chr8.3:48733283-48733302 | None:intergenic | 30.0% | |
| TCTCATAATTCTCCTAAATG+TGG | - | chr8.3:48732792-48732811 | None:intergenic | 30.0% | |
| ! | TTTTGATAGGTGAGAATGAT+TGG | + | chr8.3:48733096-48733115 | MS.gene32262:intron | 30.0% |
| !! | TGATTTGTTAGGTACCAAAT+GGG | + | chr8.3:48733595-48733614 | MS.gene32262:intron | 30.0% |
| !! | TTGATTTGTTAGGTACCAAA+TGG | + | chr8.3:48733594-48733613 | MS.gene32262:intron | 30.0% |
| AGCATCTCCTTCTTTCTTTA+TGG | + | chr8.3:48733434-48733453 | MS.gene32262:CDS | 35.0% | |
| CTATGCTGAGAAACCAAAAA+AGG | + | chr8.3:48732982-48733001 | MS.gene32262:CDS | 35.0% | |
| GAGAATGATTGGATTATTGC+TGG | + | chr8.3:48733107-48733126 | MS.gene32262:CDS | 35.0% | |
| GCTTACTCCATTTGTGAAAT+TGG | + | chr8.3:48732501-48732520 | MS.gene32262:CDS | 35.0% | |
| GTCGAAAGCGAAAGATAAAA+CGG | - | chr8.3:48733404-48733423 | None:intergenic | 35.0% | |
| TATCCATACGACACTATCAA+GGG | - | chr8.3:48733699-48733718 | None:intergenic | 35.0% | |
| TGAACTGTTTGATCTGTTTG+TGG | + | chr8.3:48732861-48732880 | MS.gene32262:CDS | 35.0% | |
| TGAATTGTAGACCCACATTT+AGG | + | chr8.3:48732777-48732796 | MS.gene32262:intron | 35.0% | |
| TGCTCCAATTGAATTAACAG+TGG | - | chr8.3:48732927-48732946 | None:intergenic | 35.0% | |
| TGTTTGATCTGTTTGTGGTA+TGG | + | chr8.3:48732866-48732885 | MS.gene32262:CDS | 35.0% | |
| TTATCCATACGACACTATCA+AGG | - | chr8.3:48733700-48733719 | None:intergenic | 35.0% | |
| AGAACAGTACCTATCCCATT+TGG | - | chr8.3:48733612-48733631 | None:intergenic | 40.0% | |
| GAAATTGGTAAAGATGCAGC+TGG | + | chr8.3:48732516-48732535 | MS.gene32262:CDS | 40.0% | |
| GAAGGAGATGCTCATTAAGA+AGG | - | chr8.3:48733426-48733445 | None:intergenic | 40.0% | |
| TCAAGCATCCGACTAACATT+CGG | - | chr8.3:48733197-48733216 | None:intergenic | 40.0% | |
| TGTTAGGTACCAAATGGGAT+AGG | + | chr8.3:48733600-48733619 | MS.gene32262:intron | 40.0% | |
| ! | AAATGGGATAGGTACTGTTC+TGG | + | chr8.3:48733611-48733630 | MS.gene32262:CDS | 40.0% |
| ! | AATGGGATAGGTACTGTTCT+GGG | + | chr8.3:48733612-48733631 | MS.gene32262:CDS | 40.0% |
| !! | GGATTATTGCTGGCTGTTTT+CGG | + | chr8.3:48733117-48733136 | MS.gene32262:CDS | 40.0% |
| AAAGATGCAGCTGGAATTGC+TGG | + | chr8.3:48732525-48732544 | MS.gene32262:CDS | 45.0% | |
| CATTCGGCGCATAGAACTAT+CGG | - | chr8.3:48733181-48733200 | None:intergenic | 45.0% | |
| GGGTCAACAGAAATGTTCTC+TGG | + | chr8.3:48732815-48732834 | MS.gene32262:CDS | 45.0% | |
| TCTATGCGCCGAATGTTAGT+CGG | + | chr8.3:48733186-48733205 | MS.gene32262:CDS | 45.0% | |
| ! | AATTGGAGCAGCTTTTCAGC+TGG | + | chr8.3:48732937-48732956 | MS.gene32262:CDS | 45.0% |
| !! | GAACCCTTGATAGTGTCGTA+TGG | + | chr8.3:48733693-48733712 | MS.gene32262:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 48732486 | 48733719 | 48732486 | ID=MS.gene32262 |
| chr8.3 | mRNA | 48732486 | 48733719 | 48732486 | ID=MS.gene32262.t1;Parent=MS.gene32262 |
| chr8.3 | exon | 48732486 | 48732546 | 48732486 | ID=MS.gene32262.t1.exon1;Parent=MS.gene32262.t1 |
| chr8.3 | CDS | 48732486 | 48732546 | 48732486 | ID=cds.MS.gene32262.t1;Parent=MS.gene32262.t1 |
| chr8.3 | exon | 48732646 | 48732682 | 48732646 | ID=MS.gene32262.t1.exon2;Parent=MS.gene32262.t1 |
| chr8.3 | CDS | 48732646 | 48732682 | 48732646 | ID=cds.MS.gene32262.t1;Parent=MS.gene32262.t1 |
| chr8.3 | exon | 48732787 | 48733003 | 48732787 | ID=MS.gene32262.t1.exon3;Parent=MS.gene32262.t1 |
| chr8.3 | CDS | 48732787 | 48733003 | 48732787 | ID=cds.MS.gene32262.t1;Parent=MS.gene32262.t1 |
| chr8.3 | exon | 48733105 | 48733263 | 48733105 | ID=MS.gene32262.t1.exon4;Parent=MS.gene32262.t1 |
| chr8.3 | CDS | 48733105 | 48733263 | 48733105 | ID=cds.MS.gene32262.t1;Parent=MS.gene32262.t1 |
| chr8.3 | exon | 48733365 | 48733484 | 48733365 | ID=MS.gene32262.t1.exon5;Parent=MS.gene32262.t1 |
| chr8.3 | CDS | 48733365 | 48733484 | 48733365 | ID=cds.MS.gene32262.t1;Parent=MS.gene32262.t1 |
| chr8.3 | exon | 48733606 | 48733719 | 48733606 | ID=MS.gene32262.t1.exon6;Parent=MS.gene32262.t1 |
| chr8.3 | CDS | 48733606 | 48733719 | 48733606 | ID=cds.MS.gene32262.t1;Parent=MS.gene32262.t1 |
| Gene Sequence |
| Protein sequence |
