Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32717.t1 | XP_024635874.1 | 98 | 715 | 12 | 1 | 1 | 715 | 1 | 713 | 0.00E+00 | 1389.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32717.t1 | Q55680 | 41.6 | 527 | 266 | 9 | 102 | 620 | 62 | 554 | 8.0e-105 | 382.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32717.t1 | A0A396IXW0 | 98.0 | 715 | 12 | 1 | 1 | 715 | 1 | 713 | 0.0e+00 | 1389.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050201 | MS.gene32717 | 0.80193 | 7.14E-49 | -1.69E-46 |
MS.gene050226 | MS.gene32717 | 0.813127 | 3.00E-51 | -1.69E-46 |
MS.gene050227 | MS.gene32717 | 0.833821 | 4.28E-56 | -1.69E-46 |
MS.gene050228 | MS.gene32717 | 0.825207 | 5.32E-54 | -1.69E-46 |
MS.gene050330 | MS.gene32717 | -0.801008 | 1.10E-48 | -1.69E-46 |
MS.gene050442 | MS.gene32717 | 0.82373 | 1.18E-53 | -1.69E-46 |
MS.gene050558 | MS.gene32717 | 0.804982 | 1.66E-49 | -1.69E-46 |
MS.gene050560 | MS.gene32717 | 0.806594 | 7.62E-50 | -1.69E-46 |
MS.gene050787 | MS.gene32717 | 0.81332 | 2.72E-51 | -1.69E-46 |
MS.gene051265 | MS.gene32717 | 0.806907 | 6.55E-50 | -1.69E-46 |
MS.gene051860 | MS.gene32717 | 0.827824 | 1.26E-54 | -1.69E-46 |
MS.gene052190 | MS.gene32717 | 0.837211 | 5.94E-57 | -1.69E-46 |
MS.gene053584 | MS.gene32717 | 0.827566 | 1.46E-54 | -1.69E-46 |
MS.gene054610 | MS.gene32717 | 0.803059 | 4.18E-49 | -1.69E-46 |
MS.gene055356 | MS.gene32717 | 0.815159 | 1.07E-51 | -1.69E-46 |
MS.gene055357 | MS.gene32717 | 0.817617 | 3.00E-52 | -1.69E-46 |
MS.gene055358 | MS.gene32717 | 0.839572 | 1.46E-57 | -1.69E-46 |
MS.gene055818 | MS.gene32717 | 0.80009 | 1.70E-48 | -1.69E-46 |
MS.gene056506 | MS.gene32717 | 0.801862 | 7.37E-49 | -1.69E-46 |
MS.gene057026 | MS.gene32717 | 0.800513 | 1.39E-48 | -1.69E-46 |
MS.gene057060 | MS.gene32717 | 0.80593 | 1.05E-49 | -1.69E-46 |
MS.gene058139 | MS.gene32717 | 0.809551 | 1.79E-50 | -1.69E-46 |
MS.gene058736 | MS.gene32717 | 0.816453 | 5.49E-52 | -1.69E-46 |
MS.gene059128 | MS.gene32717 | 0.816916 | 4.32E-52 | -1.69E-46 |
MS.gene060553 | MS.gene32717 | 0.808535 | 2.95E-50 | -1.69E-46 |
MS.gene061040 | MS.gene32717 | -0.840782 | 7.07E-58 | -1.69E-46 |
MS.gene061114 | MS.gene32717 | -0.811724 | 6.07E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32717.t1 | MTR_3g105760 | 96.084 | 715 | 12 | 2 | 1 | 715 | 1 | 699 | 0.0 | 1405 |
MS.gene32717.t1 | MTR_4g026450 | 35.972 | 581 | 318 | 9 | 87 | 647 | 95 | 641 | 1.68e-121 | 379 |
MS.gene32717.t1 | MTR_0053s0030 | 38.755 | 498 | 269 | 6 | 134 | 629 | 137 | 600 | 1.99e-113 | 358 |
MS.gene32717.t1 | MTR_6g038750 | 39.024 | 492 | 266 | 7 | 131 | 620 | 123 | 582 | 2.61e-108 | 345 |
MS.gene32717.t1 | MTR_1g046620 | 37.255 | 510 | 288 | 7 | 136 | 628 | 183 | 677 | 2.16e-104 | 337 |
MS.gene32717.t1 | MTR_1g009860 | 35.551 | 481 | 293 | 6 | 136 | 611 | 130 | 598 | 2.63e-93 | 303 |
MS.gene32717.t1 | MTR_1g009860 | 35.551 | 481 | 293 | 6 | 136 | 611 | 130 | 598 | 6.14e-93 | 303 |
MS.gene32717.t1 | MTR_1g095480 | 34.211 | 456 | 267 | 5 | 140 | 573 | 203 | 647 | 4.19e-83 | 281 |
MS.gene32717.t1 | MTR_1g095480 | 35.507 | 414 | 242 | 4 | 140 | 539 | 203 | 605 | 6.46e-81 | 270 |
MS.gene32717.t1 | MTR_3g082750 | 37.949 | 390 | 225 | 4 | 134 | 518 | 198 | 575 | 2.99e-79 | 268 |
MS.gene32717.t1 | MTR_8g091710 | 32.903 | 465 | 258 | 11 | 140 | 570 | 198 | 642 | 4.95e-70 | 243 |
MS.gene32717.t1 | MTR_3g094740 | 34.157 | 445 | 239 | 12 | 140 | 550 | 207 | 631 | 7.96e-69 | 239 |
MS.gene32717.t1 | MTR_3g094740 | 34.157 | 445 | 239 | 12 | 140 | 550 | 207 | 631 | 9.22e-69 | 240 |
MS.gene32717.t1 | MTR_0224s0030 | 30.418 | 263 | 161 | 4 | 333 | 573 | 1 | 263 | 4.93e-39 | 146 |
MS.gene32717.t1 | MTR_1g008980 | 26.817 | 399 | 278 | 9 | 124 | 518 | 41 | 429 | 3.12e-36 | 146 |
MS.gene32717.t1 | MTR_5g077080 | 27.273 | 385 | 249 | 11 | 134 | 506 | 81 | 446 | 2.86e-33 | 135 |
MS.gene32717.t1 | MTR_4g104070 | 29.683 | 347 | 198 | 12 | 117 | 435 | 39 | 367 | 1.65e-32 | 132 |
MS.gene32717.t1 | MTR_5g068050 | 25.000 | 400 | 266 | 7 | 140 | 513 | 128 | 519 | 1.92e-32 | 132 |
MS.gene32717.t1 | MTR_4g091510 | 25.000 | 432 | 284 | 9 | 109 | 514 | 184 | 601 | 1.01e-27 | 119 |
MS.gene32717.t1 | MTR_3g070410 | 29.762 | 252 | 169 | 3 | 135 | 385 | 85 | 329 | 1.06e-27 | 119 |
MS.gene32717.t1 | MTR_4g091510 | 25.000 | 432 | 284 | 9 | 109 | 514 | 189 | 606 | 1.20e-27 | 119 |
MS.gene32717.t1 | MTR_8g464860 | 24.390 | 410 | 267 | 9 | 137 | 514 | 199 | 597 | 3.11e-25 | 111 |
MS.gene32717.t1 | MTR_2g011640 | 24.427 | 393 | 263 | 8 | 143 | 514 | 272 | 651 | 1.22e-24 | 109 |
MS.gene32717.t1 | MTR_1g085610 | 23.947 | 380 | 253 | 11 | 124 | 489 | 216 | 573 | 2.69e-13 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32717.t1 | AT5G24970 | 67.353 | 729 | 205 | 8 | 3 | 711 | 2 | 717 | 0.0 | 974 |
MS.gene32717.t1 | AT5G24970 | 69.622 | 688 | 185 | 5 | 39 | 711 | 78 | 756 | 0.0 | 971 |
MS.gene32717.t1 | AT5G24970 | 66.941 | 729 | 205 | 9 | 3 | 711 | 2 | 714 | 0.0 | 962 |
MS.gene32717.t1 | AT1G79600 | 39.044 | 502 | 270 | 7 | 131 | 630 | 141 | 608 | 7.06e-119 | 372 |
MS.gene32717.t1 | AT1G71810 | 38.376 | 542 | 293 | 8 | 89 | 622 | 65 | 573 | 2.71e-117 | 368 |
MS.gene32717.t1 | AT3G24190 | 37.109 | 512 | 290 | 7 | 136 | 630 | 191 | 687 | 3.24e-100 | 326 |
MS.gene32717.t1 | AT4G31390 | 36.779 | 503 | 289 | 10 | 136 | 627 | 166 | 650 | 1.33e-96 | 313 |
MS.gene32717.t1 | AT4G31390 | 34.791 | 503 | 274 | 10 | 136 | 627 | 166 | 625 | 1.22e-86 | 286 |
MS.gene32717.t1 | AT4G31390 | 35.897 | 468 | 271 | 10 | 171 | 627 | 2 | 451 | 3.28e-86 | 280 |
MS.gene32717.t1 | AT2G39190 | 33.100 | 429 | 259 | 4 | 140 | 551 | 202 | 619 | 1.13e-75 | 260 |
MS.gene32717.t1 | AT3G07700 | 35.930 | 398 | 235 | 5 | 129 | 518 | 177 | 562 | 1.31e-75 | 258 |
MS.gene32717.t1 | AT3G07700 | 35.930 | 398 | 235 | 5 | 129 | 518 | 177 | 562 | 1.31e-75 | 258 |
MS.gene32717.t1 | AT3G07700 | 35.930 | 398 | 235 | 5 | 129 | 518 | 177 | 562 | 1.31e-75 | 258 |
MS.gene32717.t1 | AT3G07700 | 33.724 | 427 | 234 | 7 | 129 | 518 | 177 | 591 | 6.17e-70 | 243 |
MS.gene32717.t1 | AT5G64940 | 33.173 | 416 | 231 | 9 | 140 | 520 | 222 | 625 | 3.44e-63 | 225 |
MS.gene32717.t1 | AT5G64940 | 33.173 | 416 | 231 | 9 | 140 | 520 | 222 | 625 | 3.44e-63 | 225 |
MS.gene32717.t1 | AT5G24810 | 26.403 | 303 | 218 | 3 | 135 | 435 | 96 | 395 | 7.61e-32 | 133 |
MS.gene32717.t1 | AT1G65950 | 27.424 | 361 | 225 | 10 | 150 | 494 | 112 | 451 | 1.16e-31 | 129 |
MS.gene32717.t1 | AT1G65950 | 27.548 | 363 | 226 | 10 | 150 | 496 | 112 | 453 | 2.23e-31 | 129 |
MS.gene32717.t1 | AT5G05200 | 24.750 | 400 | 267 | 6 | 140 | 513 | 129 | 520 | 3.01e-31 | 129 |
MS.gene32717.t1 | AT5G50330 | 27.723 | 303 | 192 | 9 | 147 | 435 | 75 | 364 | 5.11e-31 | 127 |
MS.gene32717.t1 | AT2G39190 | 39.103 | 156 | 95 | 0 | 140 | 295 | 202 | 357 | 1.48e-30 | 124 |
MS.gene32717.t1 | AT4G24810 | 26.099 | 364 | 231 | 10 | 95 | 434 | 14 | 363 | 1.63e-29 | 123 |
MS.gene32717.t1 | AT4G24810 | 27.551 | 294 | 187 | 9 | 147 | 426 | 32 | 313 | 1.92e-29 | 119 |
MS.gene32717.t1 | AT4G24810 | 27.152 | 302 | 193 | 9 | 147 | 434 | 32 | 320 | 4.52e-29 | 121 |
MS.gene32717.t1 | AT4G24810 | 27.152 | 302 | 193 | 9 | 147 | 434 | 32 | 320 | 4.52e-29 | 121 |
MS.gene32717.t1 | AT4G24810 | 27.798 | 277 | 175 | 8 | 147 | 410 | 32 | 296 | 2.75e-28 | 116 |
MS.gene32717.t1 | AT5G24810 | 24.251 | 334 | 217 | 5 | 135 | 435 | 96 | 426 | 3.64e-27 | 118 |
MS.gene32717.t1 | AT4G24810 | 26.774 | 310 | 193 | 10 | 147 | 435 | 32 | 328 | 4.72e-27 | 115 |
MS.gene32717.t1 | AT1G11390 | 23.750 | 400 | 271 | 6 | 143 | 520 | 219 | 606 | 2.07e-26 | 115 |
MS.gene32717.t1 | AT5G50330 | 26.159 | 302 | 182 | 9 | 147 | 435 | 75 | 348 | 4.76e-26 | 112 |
MS.gene32717.t1 | AT2G40090 | 27.132 | 258 | 180 | 3 | 135 | 391 | 87 | 337 | 1.22e-22 | 102 |
MS.gene32717.t1 | AT1G61640 | 23.291 | 395 | 267 | 8 | 143 | 514 | 216 | 597 | 2.25e-22 | 102 |
MS.gene32717.t1 | AT1G61640 | 25.159 | 314 | 199 | 8 | 143 | 433 | 216 | 516 | 2.00e-19 | 93.2 |
MS.gene32717.t1 | AT1G61640 | 29.448 | 163 | 104 | 4 | 143 | 295 | 216 | 377 | 1.31e-13 | 74.3 |
Find 154 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTATAGTCCCAATATATTT+TGG | 0.124853 | 3.1:+83428889 | None:intergenic |
GAATCACTGGAAAATAAATT+TGG | 0.170233 | 3.1:-83433335 | MS.gene32717:CDS |
GGCAAATGACTTCCTTTCTT+TGG | 0.174886 | 3.1:-83427868 | MS.gene32717:CDS |
CCTTCGCAAACCGTTTAAAT+TGG | 0.209206 | 3.1:+83429667 | None:intergenic |
GTGATTGATTGTGCATTAAA+TGG | 0.216408 | 3.1:-83426047 | MS.gene32717:CDS |
CTCAAAATTCTTCTCATATC+AGG | 0.250430 | 3.1:+83426771 | None:intergenic |
GCAAATGACTTCCTTTCTTT+GGG | 0.259520 | 3.1:-83427867 | MS.gene32717:CDS |
TCAAAGCTCCCAAAATATAT+TGG | 0.261791 | 3.1:-83428898 | MS.gene32717:CDS |
CTTGGGTCCTTTCTACATTA+AGG | 0.265096 | 3.1:-83431285 | MS.gene32717:intron |
AGCCCTATACAAAGCCAAAA+AGG | 0.282708 | 3.1:+83433256 | None:intergenic |
CATGAATAGGAGCACCAAAT+TGG | 0.289543 | 3.1:+83429999 | None:intergenic |
TTATTTCATTTCATGTCTTC+AGG | 0.299658 | 3.1:-83433229 | MS.gene32717:CDS |
TCAAGAGCTTGCTAAATTAC+AGG | 0.304551 | 3.1:-83430202 | MS.gene32717:intron |
ATAGTAAATTTGTGAACTTC+AGG | 0.310511 | 3.1:+83425332 | None:intergenic |
AGTGCAACTGAGATTACTTT+AGG | 0.319962 | 3.1:-83433606 | MS.gene32717:CDS |
GCTTTGCTGTTCCATATGAT+TGG | 0.320639 | 3.1:-83429693 | MS.gene32717:CDS |
GTTACAGCTCATCTGCATTC+TGG | 0.320870 | 3.1:-83429774 | MS.gene32717:intron |
AATAAATTTGGGATTACTCT+TGG | 0.332032 | 3.1:-83433323 | MS.gene32717:CDS |
CTCCTCCTCCTTGCATAATC+AGG | 0.333771 | 3.1:+83433359 | None:intergenic |
ATTGCAACATCAGTTGAAAA+TGG | 0.333812 | 3.1:+83430037 | None:intergenic |
AGATGTATCGAAACCCAATT+TGG | 0.342391 | 3.1:-83430013 | MS.gene32717:CDS |
TCGTTAGGACAGGTTTATAA+AGG | 0.344892 | 3.1:-83429935 | MS.gene32717:intron |
AATTCTCAAGCCCTTCTGTT+TGG | 0.349573 | 3.1:-83426208 | MS.gene32717:CDS |
GAACTTGTCATTCGTAATAA+TGG | 0.366162 | 3.1:-83426747 | MS.gene32717:CDS |
CTTTGCTGTTCCATATGATT+GGG | 0.375820 | 3.1:-83429692 | MS.gene32717:CDS |
ATGCACCACTGTTCTGACTA+TGG | 0.378092 | 3.1:-83428867 | MS.gene32717:CDS |
CAGTGAGTCTCAAGATTTCC+AGG | 0.378705 | 3.1:-83427766 | MS.gene32717:intron |
AAATGTATATCAACCCCTTC+AGG | 0.380628 | 3.1:+83427837 | None:intergenic |
CAAAGCTCCCAAAATATATT+GGG | 0.384515 | 3.1:-83428897 | MS.gene32717:CDS |
GCGTTCTAGTCACAGATTGC+AGG | 0.387424 | 3.1:-83425285 | MS.gene32717:CDS |
ATTCCTAGGCATTATCGTAT+TGG | 0.390822 | 3.1:-83428405 | MS.gene32717:CDS |
GAAATCGATTATGTCCTAGA+AGG | 0.396929 | 3.1:-83429370 | MS.gene32717:CDS |
CTTTCAATGACCTTAAAATC+AGG | 0.399857 | 3.1:+83426837 | None:intergenic |
AATCACTGGAAAATAAATTT+GGG | 0.401318 | 3.1:-83433334 | MS.gene32717:CDS |
ATTAAGCTTACAGATGAAAC+AGG | 0.402280 | 3.1:-83428830 | MS.gene32717:CDS |
CCTAACGATGCTGCTGCAAT+AGG | 0.407204 | 3.1:+83429950 | None:intergenic |
TGCTCTTGTTATAAGAGCAT+TGG | 0.407739 | 3.1:-83426892 | MS.gene32717:CDS |
TTCAATGCTATATACCGGTT+TGG | 0.412458 | 3.1:-83433281 | MS.gene32717:CDS |
AGAAGGGACAGCTAAAGTTC+TGG | 0.413956 | 3.1:-83426862 | MS.gene32717:CDS |
AGAGCATTGGGATCACTAGA+AGG | 0.419842 | 3.1:-83426879 | MS.gene32717:CDS |
CCAGAGGATATTGCGCTTTG+AGG | 0.420718 | 3.1:-83426012 | MS.gene32717:intron |
TGAACATTTCAGGAGCGTAC+TGG | 0.429436 | 3.1:-83425437 | MS.gene32717:intron |
AACCTTGTTGCGACAAATGA+TGG | 0.435068 | 3.1:-83428465 | MS.gene32717:CDS |
CTTTGGGATTTATTCCTGAA+GGG | 0.436339 | 3.1:-83427851 | MS.gene32717:CDS |
TTTCCATGCTGATCCTCATC+CGG | 0.441250 | 3.1:-83428490 | MS.gene32717:CDS |
TTTGTCGCAACAAGGTTTCC+CGG | 0.442301 | 3.1:+83428471 | None:intergenic |
TCTAGTAGCAGTTAATGAAA+TGG | 0.449408 | 3.1:-83429631 | MS.gene32717:intron |
ATGAATAGGAGCACCAAATT+GGG | 0.453907 | 3.1:+83430000 | None:intergenic |
GCTCTTGTTATAAGAGCATT+GGG | 0.455514 | 3.1:-83426891 | MS.gene32717:CDS |
ATTACTTGCGGGGATGGAAA+TGG | 0.456494 | 3.1:+83433857 | None:intergenic |
AGTGGACAACAATGCTTCTT+CGG | 0.457905 | 3.1:-83425367 | MS.gene32717:CDS |
TGATTGATTGTGCATTAAAT+GGG | 0.459548 | 3.1:-83426046 | MS.gene32717:CDS |
TTATGGTGCAGATATTCAAC+TGG | 0.462990 | 3.1:-83433413 | MS.gene32717:intron |
TCTTTGGGATTTATTCCTGA+AGG | 0.465436 | 3.1:-83427852 | MS.gene32717:CDS |
AAAGTTTCAATGCTATATAC+CGG | 0.467023 | 3.1:-83433286 | MS.gene32717:CDS |
CATTCGTGAGGTGGTGAAGT+TGG | 0.471424 | 3.1:-83425399 | MS.gene32717:CDS |
CTGACTATGGAGTGGTTAGA+TGG | 0.472351 | 3.1:-83428854 | MS.gene32717:CDS |
TGAAGTTGGCGCCAGGGGAG+TGG | 0.472963 | 3.1:-83425385 | MS.gene32717:CDS |
GAGGTGGTGAAGTTGGCGCC+AGG | 0.478413 | 3.1:-83425392 | MS.gene32717:CDS |
CGTGAAACTCTAATACGCTT+GGG | 0.479943 | 3.1:-83431302 | MS.gene32717:CDS |
TTCCATGCTGATCCTCATCC+GGG | 0.481310 | 3.1:-83428489 | MS.gene32717:CDS |
TATACTGTTGGTAATATGTC+AGG | 0.481567 | 3.1:+83430228 | None:intergenic |
TAGAAGATTACTTGCGGGGA+TGG | 0.482737 | 3.1:+83433851 | None:intergenic |
CTGATTATGCAAGGAGGAGG+AGG | 0.483661 | 3.1:-83433358 | MS.gene32717:CDS |
GTGGAATCGGTTAGAGCGCC+TGG | 0.485520 | 3.1:-83426715 | MS.gene32717:intron |
ATGGATCGATAAGGTGGAAT+CGG | 0.486052 | 3.1:-83426728 | MS.gene32717:CDS |
GTAAAGCTTCTTTAAACAGA+AGG | 0.487728 | 3.1:-83428802 | MS.gene32717:CDS |
TGCAGCAGCATCGTTAGGAC+AGG | 0.489237 | 3.1:-83429945 | MS.gene32717:CDS |
ATAAGTCTTCCAATAACAAA+AGG | 0.490053 | 3.1:+83426807 | None:intergenic |
CCTATTGCAGCAGCATCGTT+AGG | 0.491168 | 3.1:-83429950 | MS.gene32717:CDS |
TCGTGAAACTCTAATACGCT+TGG | 0.494159 | 3.1:-83431303 | MS.gene32717:CDS |
AAGGAGGAGGAGGGAATCAC+TGG | 0.494567 | 3.1:-83433348 | MS.gene32717:CDS |
CATACATGATATCATATAGT+TGG | 0.498022 | 3.1:+83426943 | None:intergenic |
CCAATTTAAACGGTTTGCGA+AGG | 0.498384 | 3.1:-83429667 | MS.gene32717:CDS |
CTTATAACAAGAGCATAGTC+TGG | 0.499339 | 3.1:+83426900 | None:intergenic |
TCAAATGATTTCCAAACAGA+AGG | 0.508253 | 3.1:+83426197 | None:intergenic |
AGCATTGTTGTCCACTCCCC+TGG | 0.508780 | 3.1:+83425374 | None:intergenic |
CCGTTGACTCCTATCAGAAA+AGG | 0.508783 | 3.1:+83427791 | None:intergenic |
TTTAGGAAAATGTATGCCAC+TGG | 0.510552 | 3.1:-83433589 | MS.gene32717:CDS |
AAACTTGCCTTAATGTAGAA+AGG | 0.510831 | 3.1:+83431278 | None:intergenic |
GAACATTTCAGGAGCGTACT+GGG | 0.511774 | 3.1:-83425436 | MS.gene32717:intron |
ATTATTCATACTATCAGAGA+AGG | 0.516902 | 3.1:-83426138 | MS.gene32717:CDS |
TTTGGGATTTATTCCTGAAG+GGG | 0.519258 | 3.1:-83427850 | MS.gene32717:CDS |
TTTGGCTTTGTATAGGGCTG+CGG | 0.520273 | 3.1:-83433252 | MS.gene32717:CDS |
CAGGAATAAATCCCAAAGAA+AGG | 0.520817 | 3.1:+83427856 | None:intergenic |
CTGGAAATCTTGAGACTCAC+TGG | 0.524828 | 3.1:+83427767 | None:intergenic |
TTTCGATGCAACAGCCAGGA+AGG | 0.530328 | 3.1:+83433537 | None:intergenic |
CGAATTTCGATGCAACAGCC+AGG | 0.533083 | 3.1:+83433533 | None:intergenic |
TAATCGCGACTCTCTGAGCT+TGG | 0.534400 | 3.1:-83427889 | MS.gene32717:CDS |
GCAACAAGGTTTCCCGGATG+AGG | 0.535243 | 3.1:+83428477 | None:intergenic |
AGGGATTATACTGCTCTTTG+AGG | 0.537260 | 3.1:-83428533 | MS.gene32717:CDS |
ATTCTTCTCATATCAGGACT+AGG | 0.539845 | 3.1:+83426777 | None:intergenic |
GGTGGTGAAGTTGGCGCCAG+GGG | 0.542731 | 3.1:-83425390 | MS.gene32717:CDS |
TCGATGCAACAGCCAGGAAG+GGG | 0.547700 | 3.1:+83433539 | None:intergenic |
TATGGAACAGCAAAGCATCA+AGG | 0.549400 | 3.1:+83429700 | None:intergenic |
TAAAGCTTCTTTAAACAGAA+GGG | 0.550455 | 3.1:-83428801 | MS.gene32717:CDS |
CACATTAATACAGCTCGGAC+AGG | 0.550830 | 3.1:-83430265 | MS.gene32717:intron |
CTTCTACTATATCCCGAAGA+AGG | 0.551311 | 3.1:+83426096 | None:intergenic |
GACAACAATGCTTCTTCGGA+TGG | 0.552834 | 3.1:-83425363 | MS.gene32717:CDS |
AGCTCTTGACAATATACTGT+TGG | 0.553547 | 3.1:+83430216 | None:intergenic |
GCTGTAAAAGTTCAGAGGCC+AGG | 0.555137 | 3.1:-83429741 | MS.gene32717:CDS |
TTCGTAATAATGGATCGATA+AGG | 0.555778 | 3.1:-83426737 | MS.gene32717:CDS |
TTTGCTGTTCCATATGATTG+GGG | 0.556819 | 3.1:-83429691 | MS.gene32717:CDS |
CCTCAAAGCGCAATATCCTC+TGG | 0.559874 | 3.1:+83426012 | None:intergenic |
TTGAGGCAAATGCTCGAGGA+TGG | 0.561214 | 3.1:-83428516 | MS.gene32717:CDS |
AGGTGGTGAAGTTGGCGCCA+GGG | 0.561779 | 3.1:-83425391 | MS.gene32717:CDS |
TGGAAATGGCGCCGGTGTGA+CGG | 0.564218 | 3.1:+83433871 | None:intergenic |
CTCCTTGCATAATCAGGAGA+CGG | 0.566045 | 3.1:+83433365 | None:intergenic |
CTCTTTGAGGCAAATGCTCG+AGG | 0.566356 | 3.1:-83428520 | MS.gene32717:CDS |
TTCGATGCAACAGCCAGGAA+GGG | 0.569360 | 3.1:+83433538 | None:intergenic |
AAGAGCATAGTCTGGTGGGA+GGG | 0.569585 | 3.1:+83426908 | None:intergenic |
AAATCGATTATGTCCTAGAA+GGG | 0.569775 | 3.1:-83429369 | MS.gene32717:CDS |
TGCGGGGATGGAAATGGCGC+CGG | 0.571024 | 3.1:+83433863 | None:intergenic |
CAAATGATTTCCAAACAGAA+GGG | 0.573018 | 3.1:+83426198 | None:intergenic |
GTCAATGAAAGTGACATGCC+TGG | 0.574169 | 3.1:+83429723 | None:intergenic |
ACAGATTGCAGGTAGCCGCT+TGG | 0.574204 | 3.1:-83425274 | MS.gene32717:CDS |
GTAATAATGGATCGATAAGG+TGG | 0.575385 | 3.1:-83426734 | MS.gene32717:CDS |
CAGAAGGGAACTCATTGACC+AGG | 0.577015 | 3.1:-83428786 | MS.gene32717:intron |
ACTGGTTTCACCAACGTGCA+TGG | 0.577158 | 3.1:-83433395 | MS.gene32717:CDS |
ATCCATCATTTGTCGCAACA+AGG | 0.577514 | 3.1:+83428463 | None:intergenic |
ATGGAACAGCAAAGCATCAA+GGG | 0.579318 | 3.1:+83429701 | None:intergenic |
CTCCGTCTCCTGATTATGCA+AGG | 0.580889 | 3.1:-83433367 | MS.gene32717:CDS |
CTCCTGATTATGCAAGGAGG+AGG | 0.582551 | 3.1:-83433361 | MS.gene32717:CDS |
ACTGGAATATCTGAGGAGGT+TGG | 0.586654 | 3.1:-83433571 | MS.gene32717:CDS |
TAACAAGAGCATAGTCTGGT+GGG | 0.586859 | 3.1:+83426904 | None:intergenic |
CGATGCAACAGCCAGGAAGG+GGG | 0.588252 | 3.1:+83433540 | None:intergenic |
GTGACGGTAGAGAGCGGCGA+AGG | 0.599958 | 3.1:+83433887 | None:intergenic |
AGTCCAATACGATAATGCCT+AGG | 0.612005 | 3.1:+83428402 | None:intergenic |
GAGCATTGGGATCACTAGAA+GGG | 0.612395 | 3.1:-83426878 | MS.gene32717:CDS |
TGATTATGCAAGGAGGAGGA+GGG | 0.614228 | 3.1:-83433357 | MS.gene32717:CDS |
GAATAATAGAAGATCTTCTG+TGG | 0.620705 | 3.1:+83426154 | None:intergenic |
TAAGTAGAAGATTACTTGCG+GGG | 0.624383 | 3.1:+83433847 | None:intergenic |
GATGCAACAGCCAGGAAGGG+GGG | 0.624758 | 3.1:+83433541 | None:intergenic |
CGTTTCACACATCAATGAGG+AGG | 0.624767 | 3.1:-83433914 | None:intergenic |
GTAGAGAGAAGCAAATCGCT+CGG | 0.625793 | 3.1:+83429339 | None:intergenic |
GCCGGTGTGACGGTAGAGAG+CGG | 0.627994 | 3.1:+83433881 | None:intergenic |
TTGCTGTTCCATATGATTGG+GGG | 0.633281 | 3.1:-83429690 | MS.gene32717:CDS |
ATAACAAGAGCATAGTCTGG+TGG | 0.635486 | 3.1:+83426903 | None:intergenic |
GTATGCCACTGGAATATCTG+AGG | 0.636314 | 3.1:-83433578 | MS.gene32717:CDS |
TTATTCATACTATCAGAGAA+GGG | 0.643426 | 3.1:-83426137 | MS.gene32717:CDS |
CAAGAGCATAGTCTGGTGGG+AGG | 0.648205 | 3.1:+83426907 | None:intergenic |
TTCCCGGATGAGGATCAGCA+TGG | 0.651555 | 3.1:+83428487 | None:intergenic |
GCAACATCAGTTGAAAATGG+AGG | 0.657022 | 3.1:+83430040 | None:intergenic |
ATGGGAATCGTCAAGACCAG+AGG | 0.657066 | 3.1:-83426028 | MS.gene32717:CDS |
GCCGCTCTCTACCGTCACAC+CGG | 0.658142 | 3.1:-83433882 | MS.gene32717:CDS |
TTGTAGCTGTAAAAGTTCAG+AGG | 0.658581 | 3.1:-83429746 | MS.gene32717:CDS |
CGGAGTTTCACCATGCACGT+TGG | 0.670314 | 3.1:+83433385 | None:intergenic |
ATGTCTTCAGGCTAACAATG+TGG | 0.676678 | 3.1:-83433217 | MS.gene32717:CDS |
AACCTCCTCAGATATTCCAG+TGG | 0.700820 | 3.1:+83433573 | None:intergenic |
CCACTGTTCTGACTATGGAG+TGG | 0.712460 | 3.1:-83428862 | MS.gene32717:CDS |
TATCGACAAATAGAGCCAAG+CGG | 0.721754 | 3.1:+83425259 | None:intergenic |
CGTCTCCTGATTATGCAAGG+AGG | 0.725178 | 3.1:-83433364 | MS.gene32717:CDS |
TGCCACTGGAATATCTGAGG+AGG | 0.727240 | 3.1:-83433575 | MS.gene32717:CDS |
CCACTCCATAGTCAGAACAG+TGG | 0.749309 | 3.1:+83428862 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 83425235 | 83433922 | 83425235 | ID=MS.gene32717 |
chr3.1 | mRNA | 83425235 | 83433922 | 83425235 | ID=MS.gene32717.t1;Parent=MS.gene32717 |
chr3.1 | exon | 83433862 | 83433922 | 83433862 | ID=MS.gene32717.t1.exon1;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83433862 | 83433922 | 83433862 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83433534 | 83433642 | 83433534 | ID=MS.gene32717.t1.exon2;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83433534 | 83433642 | 83433534 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83433178 | 83433424 | 83433178 | ID=MS.gene32717.t1.exon3;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83433178 | 83433424 | 83433178 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83431286 | 83431327 | 83431286 | ID=MS.gene32717.t1.exon4;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83431286 | 83431327 | 83431286 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83430203 | 83430274 | 83430203 | ID=MS.gene32717.t1.exon5;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83430203 | 83430274 | 83430203 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83429936 | 83430071 | 83429936 | ID=MS.gene32717.t1.exon6;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83429936 | 83430071 | 83429936 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83429632 | 83429789 | 83429632 | ID=MS.gene32717.t1.exon7;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83429632 | 83429789 | 83429632 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83429326 | 83429410 | 83429326 | ID=MS.gene32717.t1.exon8;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83429326 | 83429410 | 83429326 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83428787 | 83428956 | 83428787 | ID=MS.gene32717.t1.exon9;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83428787 | 83428956 | 83428787 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83428392 | 83428553 | 83428392 | ID=MS.gene32717.t1.exon10;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83428392 | 83428553 | 83428392 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83427767 | 83427925 | 83427767 | ID=MS.gene32717.t1.exon11;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83427767 | 83427925 | 83427767 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83426716 | 83426976 | 83426716 | ID=MS.gene32717.t1.exon12;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83426716 | 83426976 | 83426716 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83426013 | 83426285 | 83426013 | ID=MS.gene32717.t1.exon13;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83426013 | 83426285 | 83426013 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
chr3.1 | exon | 83425235 | 83425447 | 83425235 | ID=MS.gene32717.t1.exon14;Parent=MS.gene32717.t1 |
chr3.1 | CDS | 83425235 | 83425447 | 83425235 | ID=cds.MS.gene32717.t1;Parent=MS.gene32717.t1 |
Gene Sequence |
Protein sequence |