Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33735.t1 | XP_003608219.1 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 1.80E-32 | 149.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33735.t1 | G7JRS5 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 1.3e-32 | 149.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene33735 | 0.806617 | 7.54E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene33735 | 0.815603 | 8.50E-52 | -1.69E-46 |
| MS.gene051748 | MS.gene33735 | 0.800405 | 1.46E-48 | -1.69E-46 |
| MS.gene051975 | MS.gene33735 | 0.808799 | 2.59E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene33735 | 0.810783 | 9.71E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene33735 | 0.816797 | 4.59E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene33735 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene33735 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene33735 | 0.820821 | 5.60E-53 | -1.69E-46 |
| MS.gene056638 | MS.gene33735 | 0.803964 | 2.71E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene33735 | 0.83101 | 2.13E-55 | -1.69E-46 |
| MS.gene057079 | MS.gene33735 | 0.809624 | 1.73E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene33735 | 0.808538 | 2.95E-50 | -1.69E-46 |
| MS.gene05781 | MS.gene33735 | 0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene33735 | 0.83256 | 8.82E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene33735 | 0.816222 | 6.18E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene33735 | 0.822456 | 2.35E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene33735 | 0.830781 | 2.42E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene33735 | -0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene33735 | 0.8266 | 2.48E-54 | -1.69E-46 |
| MS.gene060297 | MS.gene33735 | 0.805633 | 1.21E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene33735 | 0.829839 | 4.11E-55 | -1.69E-46 |
| MS.gene060763 | MS.gene33735 | 0.80649 | 8.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037044 | MS.gene33735 | PPI |
| MS.gene33735 | MS.gene007196 | PPI |
| MS.gene24697 | MS.gene33735 | PPI |
| MS.gene33735 | MS.gene55120 | PPI |
| MS.gene07741 | MS.gene33735 | PPI |
| MS.gene050299 | MS.gene33735 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33735.t1 | MTR_4g090910 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 2.09e-73 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33735.t1 | AT1G11240 | 73.134 | 67 | 18 | 0 | 14 | 80 | 21 | 87 | 7.42e-20 | 82.0 |
Find 37 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTCAGTTTCTTCTTCT+TGG | 0.106094 | 4.4:+23261051 | None:intergenic |
| GATCTCAAAGATTATGTTAC+TGG | 0.251622 | 4.4:-23261323 | MS.gene33735:CDS |
| CTCCCGCGTTCCAACGCATC+TGG | 0.254796 | 4.4:+23260021 | None:intergenic |
| AGCTTCTTCTTGTTGTTTGT+TGG | 0.267711 | 4.4:+23261265 | None:intergenic |
| TTGGAAAGAGAACTTGCTTA+TGG | 0.326372 | 4.4:-23261122 | MS.gene33735:CDS |
| ACGCAACGAGGAACGCATAA+AGG | 0.384606 | 4.4:-23261231 | MS.gene33735:intron |
| TGGAAAGAGAACTTGCTTAT+GGG | 0.391137 | 4.4:-23261121 | MS.gene33735:CDS |
| CCAACTGATGACACTGAAAC+TGG | 0.412428 | 4.4:-23261089 | MS.gene33735:CDS |
| TCCCGCGTTCCAACGCATCT+GGG | 0.416803 | 4.4:+23260022 | None:intergenic |
| GCAATATCAGAGCGCAAAAC+TGG | 0.417440 | 4.4:-23261404 | MS.gene33735:CDS |
| AAACAAGTTCAATCTATTGC+TGG | 0.433583 | 4.4:-23261032 | MS.gene33735:intron |
| TATTGCTGCTTCTTCATCCA+TGG | 0.449284 | 4.4:+23261421 | None:intergenic |
| GCTACGCACTATCCCACTTT+GGG | 0.461942 | 4.4:-23259968 | MS.gene33735:CDS |
| CCAGTTTCAGTGTCATCAGT+TGG | 0.464675 | 4.4:+23261089 | None:intergenic |
| TACGGCATAGTGGTCAATCC+TGG | 0.490172 | 4.4:+23259922 | None:intergenic |
| TGCTACGCACTATCCCACTT+TGG | 0.499457 | 4.4:-23259969 | MS.gene33735:CDS |
| CCCCAGATGCGTTGGAACGC+GGG | 0.501051 | 4.4:-23260023 | MS.gene33735:CDS |
| CCCGCGTTCCAACGCATCTG+GGG | 0.503877 | 4.4:+23260023 | None:intergenic |
| CGCGGGAGTAGCGCCCTTCG+TGG | 0.504397 | 4.4:-23260006 | MS.gene33735:CDS |
| TAGAGTGATGGCGGCCACGA+AGG | 0.524822 | 4.4:+23259992 | None:intergenic |
| AGAGTGATGGCGGCCACGAA+GGG | 0.528499 | 4.4:+23259993 | None:intergenic |
| CACTATCCCACTTTGGGAGT+CGG | 0.532158 | 4.4:-23259962 | MS.gene33735:CDS |
| GGAAAGAGAACTTGCTTATG+GGG | 0.538034 | 4.4:-23261120 | MS.gene33735:CDS |
| GGAAAAGCCGACTCCCAAAG+TGG | 0.567808 | 4.4:+23259955 | None:intergenic |
| AGGCCACACTCAACTCCGCT+AGG | 0.570000 | 4.4:+23260047 | None:intergenic |
| ATCTTTCTCATCGAAAGAGA+TGG | 0.597691 | 4.4:+23261343 | None:intergenic |
| CCGCGTTCCAACGCATCTGG+GGG | 0.610559 | 4.4:+23260024 | None:intergenic |
| GTTTCAGTGTCATCAGTTGG+TGG | 0.621072 | 4.4:+23261092 | None:intergenic |
| GAAAAGCCGACTCCCAAAGT+GGG | 0.634148 | 4.4:+23259956 | None:intergenic |
| GAGCCTAGCGGAGTTGAGTG+TGG | 0.641543 | 4.4:-23260050 | MS.gene33735:CDS |
| GTTGCCTATAGCACTAGCGT+TGG | 0.645790 | 4.4:-23260072 | MS.gene33735:intron |
| TAGTGCGTAGCATAGAGTGA+TGG | 0.657099 | 4.4:+23259980 | None:intergenic |
| TGCGTAGCATAGAGTGATGG+CGG | 0.660688 | 4.4:+23259983 | None:intergenic |
| TTTAAGACGCAAACGCAACG+AGG | 0.676281 | 4.4:-23261243 | MS.gene33735:CDS |
| GAAAGAGAACTTGCTTATGG+GGG | 0.681530 | 4.4:-23261119 | MS.gene33735:CDS |
| GTCAATCCTGGATAGCAGAG+CGG | 0.721053 | 4.4:+23259934 | None:intergenic |
| GCACTAGCGTTGGAGCCTAG+CGG | 0.728446 | 4.4:-23260062 | MS.gene33735:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAACAAATTGACAAATTA+AGG | + | chr4.4:23260681-23260700 | None:intergenic | 20.0% |
| !! | GAAACAAATTGACAAATTAA+GGG | + | chr4.4:23260680-23260699 | None:intergenic | 20.0% |
| !!! | AAAATTCAATTTTATTGCAG+AGG | - | chr4.4:23260206-23260225 | MS.gene33735:intron | 20.0% |
| !!! | TAAGCTATTTCTATAACATA+AGG | - | chr4.4:23260441-23260460 | MS.gene33735:intron | 20.0% |
| !! | GAATCTTTAAGAAAATGAGT+AGG | + | chr4.4:23260151-23260170 | None:intergenic | 25.0% |
| AAACAAGTTCAATCTATTGC+TGG | - | chr4.4:23260322-23260341 | MS.gene33735:intron | 30.0% | |
| AAACAATTGTGAGACTGATT+GGG | + | chr4.4:23260589-23260608 | None:intergenic | 30.0% | |
| ACCTATATGAGCTTAACTAT+TGG | + | chr4.4:23260615-23260634 | None:intergenic | 30.0% | |
| ATTAAGTTCCTTCTTCATAC+TGG | - | chr4.4:23260765-23260784 | MS.gene33735:intron | 30.0% | |
| GAACTAAAAATTTGTACTGG+AGG | - | chr4.4:23261033-23261052 | MS.gene33735:CDS | 30.0% | |
| GATCTCAAAGATTATGTTAC+TGG | - | chr4.4:23260031-23260050 | MS.gene33735:CDS | 30.0% | |
| TAAAAATTTGTACTGGAGGA+GGG | - | chr4.4:23261037-23261056 | MS.gene33735:CDS | 30.0% | |
| TAAACAATTGTGAGACTGAT+TGG | + | chr4.4:23260590-23260609 | None:intergenic | 30.0% | |
| TGCTTAGTGTTAGTTGTAAA+AGG | - | chr4.4:23260725-23260744 | MS.gene33735:intron | 30.0% | |
| TTTACAACTAACACTAAGCA+TGG | + | chr4.4:23260725-23260744 | None:intergenic | 30.0% | |
| ! | AATTTTATTGCAGAGGAAGT+TGG | - | chr4.4:23260213-23260232 | MS.gene33735:intron | 30.0% |
| ! | GAGTTAGCTTAATGTTTACT+AGG | - | chr4.4:23260834-23260853 | MS.gene33735:intron | 30.0% |
| AATACAAAACCGTCCTCATT+TGG | - | chr4.4:23261008-23261027 | MS.gene33735:intron | 35.0% | |
| AATGTATGCCAGTATGAAGA+AGG | + | chr4.4:23260776-23260795 | None:intergenic | 35.0% | |
| AGAAATAGAGTACATTGGGA+GGG | - | chr4.4:23260955-23260974 | MS.gene33735:intron | 35.0% | |
| ATACAAAACCGTCCTCATTT+GGG | - | chr4.4:23261009-23261028 | MS.gene33735:intron | 35.0% | |
| ATCTTTCTCATCGAAAGAGA+TGG | + | chr4.4:23260014-23260033 | None:intergenic | 35.0% | |
| CTAAAAATTTGTACTGGAGG+AGG | - | chr4.4:23261036-23261055 | MS.gene33735:CDS | 35.0% | |
| CTTAATGTTTACTAGGACTG+AGG | - | chr4.4:23260841-23260860 | MS.gene33735:intron | 35.0% | |
| GCCAATAGTTAAGCTCATAT+AGG | - | chr4.4:23260611-23260630 | MS.gene33735:intron | 35.0% | |
| GCTTATTGTATAAACTCTCG+AGG | + | chr4.4:23260521-23260540 | None:intergenic | 35.0% | |
| GGGGAACTAAAAATTTGTAC+TGG | - | chr4.4:23261030-23261049 | MS.gene33735:intron | 35.0% | |
| GTGGAAAATATAGAGGGAAA+TGG | + | chr4.4:23261201-23261220 | None:intergenic | 35.0% | |
| GTTTGTCAGTTTCTTCTTCT+TGG | + | chr4.4:23260306-23260325 | None:intergenic | 35.0% | |
| TGGGAGAAATAGAGTACATT+GGG | - | chr4.4:23260951-23260970 | MS.gene33735:intron | 35.0% | |
| TTCATCATCAGACACGTTTA+AGG | + | chr4.4:23260652-23260671 | None:intergenic | 35.0% | |
| ! | TGGAAAGAGAACTTGCTTAT+GGG | - | chr4.4:23260233-23260252 | MS.gene33735:intron | 35.0% |
| ! | TTGGAAAGAGAACTTGCTTA+TGG | - | chr4.4:23260232-23260251 | MS.gene33735:intron | 35.0% |
| !! | AGCTTCTTCTTGTTGTTTGT+TGG | + | chr4.4:23260092-23260111 | None:intergenic | 35.0% |
| !!! | ATTTTTAGTTCCCCCAAATG+AGG | + | chr4.4:23261024-23261043 | None:intergenic | 35.0% |
| ACTCGCAAACAAAGGCTAAT+AGG | + | chr4.4:23260889-23260908 | None:intergenic | 40.0% | |
| CAAGACATGAGGACTGATTA+AGG | + | chr4.4:23260809-23260828 | None:intergenic | 40.0% | |
| CATCAGACACGTTTAAGGAT+TGG | + | chr4.4:23260647-23260666 | None:intergenic | 40.0% | |
| CCAAACAAAGCCTTAGTTGT+CGG | - | chr4.4:23261257-23261276 | MS.gene33735:CDS | 40.0% | |
| GAAAAGAGGAAGGAGAAAGT+GGG | - | chr4.4:23260932-23260951 | MS.gene33735:intron | 40.0% | |
| GAAATAGAGTACATTGGGAG+GGG | - | chr4.4:23260956-23260975 | MS.gene33735:intron | 40.0% | |
| GAGAAATAGAGTACATTGGG+AGG | - | chr4.4:23260954-23260973 | MS.gene33735:intron | 40.0% | |
| GTGGGAGAAATAGAGTACAT+TGG | - | chr4.4:23260950-23260969 | MS.gene33735:intron | 40.0% | |
| TACAAAACCGTCCTCATTTG+GGG | - | chr4.4:23261010-23261029 | MS.gene33735:intron | 40.0% | |
| ! | GAAAGAGAACTTGCTTATGG+GGG | - | chr4.4:23260235-23260254 | MS.gene33735:intron | 40.0% |
| ! | GGAAAGAGAACTTGCTTATG+GGG | - | chr4.4:23260234-23260253 | MS.gene33735:intron | 40.0% |
| ! | TTAGCCTTTGTTTGCGAGTT+TGG | - | chr4.4:23260890-23260909 | MS.gene33735:intron | 40.0% |
| !! | CGACAACTAAGGCTTTGTTT+GGG | + | chr4.4:23261259-23261278 | None:intergenic | 40.0% |
| !! | TAAGGCTTTGTTTGGGAGTT+TGG | + | chr4.4:23261252-23261271 | None:intergenic | 40.0% |
| !!! | GATGGTTTTGGAAAAGAGGA+AGG | - | chr4.4:23260922-23260941 | MS.gene33735:intron | 40.0% |
| ACAAAACCGTCCTCATTTGG+GGG | - | chr4.4:23261011-23261030 | MS.gene33735:intron | 45.0% | |
| CCAACTGATGACACTGAAAC+TGG | - | chr4.4:23260265-23260284 | MS.gene33735:intron | 45.0% | |
| CCAGTTTCAGTGTCATCAGT+TGG | + | chr4.4:23260268-23260287 | None:intergenic | 45.0% | |
| GCAATATCAGAGCGCAAAAC+TGG | - | chr4.4:23259950-23259969 | MS.gene33735:CDS | 45.0% | |
| GGAAAAGAGGAAGGAGAAAG+TGG | - | chr4.4:23260931-23260950 | MS.gene33735:intron | 45.0% | |
| GTTTCAGTGTCATCAGTTGG+TGG | + | chr4.4:23260265-23260284 | None:intergenic | 45.0% | |
| TAACTCGTGCACAAGACATG+AGG | + | chr4.4:23260820-23260839 | None:intergenic | 45.0% | |
| TAGGCAACTACCGACAACTA+AGG | + | chr4.4:23261270-23261289 | None:intergenic | 45.0% | |
| TAGTGCGTAGCATAGAGTGA+TGG | + | chr4.4:23261377-23261396 | None:intergenic | 45.0% | |
| TGGGGGGTGGAAAATATAGA+GGG | + | chr4.4:23261207-23261226 | None:intergenic | 45.0% | |
| TTAGTTCCCCCAAATGAGGA+CGG | + | chr4.4:23261020-23261039 | None:intergenic | 45.0% | |
| TTGGGGGGTGGAAAATATAG+AGG | + | chr4.4:23261208-23261227 | None:intergenic | 45.0% | |
| ! | CCTTTGTTTGCGAGTTTGGA+GGG | - | chr4.4:23260894-23260913 | MS.gene33735:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | chr4.4:23260895-23260914 | MS.gene33735:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr4.4:23261247-23261266 | None:intergenic | 45.0% |
| ! | TTGTACTGGAGGAGGGTTTT+GGG | - | chr4.4:23261044-23261063 | MS.gene33735:CDS | 45.0% |
| ! | TTTAAGACGCAAACGCAACG+AGG | - | chr4.4:23260111-23260130 | MS.gene33735:intron | 45.0% |
| ! | TTTGTACTGGAGGAGGGTTT+TGG | - | chr4.4:23261043-23261062 | MS.gene33735:CDS | 45.0% |
| !! | CCGACAACTAAGGCTTTGTT+TGG | + | chr4.4:23261260-23261279 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr4.4:23261248-23261267 | None:intergenic | 45.0% |
| !!! | AGGGGATGGTTTTGGAAAAG+AGG | - | chr4.4:23260918-23260937 | MS.gene33735:intron | 45.0% |
| ACGCAACGAGGAACGCATAA+AGG | - | chr4.4:23260123-23260142 | MS.gene33735:intron | 50.0% | |
| ATAGAGTACATTGGGAGGGG+AGG | - | chr4.4:23260959-23260978 | MS.gene33735:intron | 50.0% | |
| CCCTCCAAACTCGCAAACAA+AGG | + | chr4.4:23260897-23260916 | None:intergenic | 50.0% | |
| GCTACGCACTATCCCACTTT+GGG | - | chr4.4:23261386-23261405 | MS.gene33735:CDS | 50.0% | |
| GTTGCCTATAGCACTAGCGT+TGG | - | chr4.4:23261282-23261301 | MS.gene33735:CDS | 50.0% | |
| TAGAGTACATTGGGAGGGGA+GGG | - | chr4.4:23260960-23260979 | MS.gene33735:intron | 50.0% | |
| TGCGTAGCATAGAGTGATGG+CGG | + | chr4.4:23261374-23261393 | None:intergenic | 50.0% | |
| TGCTACGCACTATCCCACTT+TGG | - | chr4.4:23261385-23261404 | MS.gene33735:CDS | 50.0% | |
| ! | CACTATCCCACTTTGGGAGT+CGG | - | chr4.4:23261392-23261411 | MS.gene33735:CDS | 50.0% |
| ! | GAAAAGCCGACTCCCAAAGT+GGG | + | chr4.4:23261401-23261420 | None:intergenic | 50.0% |
| ! | GCCTTTGTTTGCGAGTTTGG+AGG | - | chr4.4:23260893-23260912 | MS.gene33735:intron | 50.0% |
| ! | TGTACTGGAGGAGGGTTTTG+GGG | - | chr4.4:23261045-23261064 | MS.gene33735:CDS | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr4.4:23261249-23261268 | None:intergenic | 50.0% |
| GAGGGGTAGGAAAGGCTTTG+GGG | + | chr4.4:23261225-23261244 | None:intergenic | 55.0% | |
| GGAGGGGTAGGAAAGGCTTT+GGG | + | chr4.4:23261226-23261245 | None:intergenic | 55.0% | |
| GGCTCCAACGCTAGTGCTAT+AGG | + | chr4.4:23261289-23261308 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+GGG | - | chr4.4:23260899-23260918 | MS.gene33735:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr4.4:23261243-23261262 | None:intergenic | 55.0% | |
| TGTTTGCGAGTTTGGAGGGG+AGG | - | chr4.4:23260898-23260917 | MS.gene33735:intron | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr4.4:23261244-23261263 | None:intergenic | 55.0% | |
| TTTGCGAGTTTGGAGGGGAG+GGG | - | chr4.4:23260900-23260919 | MS.gene33735:intron | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | chr4.4:23261242-23261261 | None:intergenic | 55.0% | |
| ! | AGGGGTAGGAAAGGCTTTGG+GGG | + | chr4.4:23261224-23261243 | None:intergenic | 55.0% |
| ! | GCTTTTCCGCTCTGCTATCC+AGG | - | chr4.4:23261414-23261433 | MS.gene33735:CDS | 55.0% |
| ! | GGAAAAGCCGACTCCCAAAG+TGG | + | chr4.4:23261402-23261421 | None:intergenic | 55.0% |
| !! | GTACTGGAGGAGGGTTTTGG+GGG | - | chr4.4:23261046-23261065 | MS.gene33735:CDS | 55.0% |
| !!! | TACTGGAGGAGGGTTTTGGG+GGG | - | chr4.4:23261047-23261066 | MS.gene33735:CDS | 55.0% |
| ACATTGGGAGGGGAGGGCTT+TGG | - | chr4.4:23260966-23260985 | MS.gene33735:intron | 60.0% | |
| AGGCCACACTCAACTCCGCT+AGG | + | chr4.4:23261310-23261329 | None:intergenic | 60.0% | |
| ATTGGGAGGGGAGGGCTTTG+GGG | - | chr4.4:23260968-23260987 | MS.gene33735:intron | 60.0% | |
| CATTGGGAGGGGAGGGCTTT+GGG | - | chr4.4:23260967-23260986 | MS.gene33735:intron | 60.0% | |
| GAGCCTAGCGGAGTTGAGTG+TGG | - | chr4.4:23261304-23261323 | MS.gene33735:CDS | 60.0% | |
| GGGAGGGGTAGGAAAGGCTT+TGG | + | chr4.4:23261227-23261246 | None:intergenic | 60.0% | |
| TCCCGCGTTCCAACGCATCT+GGG | + | chr4.4:23261335-23261354 | None:intergenic | 60.0% | |
| TTGGAGGGGAGGGGTAGGAA+AGG | + | chr4.4:23261233-23261252 | None:intergenic | 60.0% | |
| ! | GCACTAGCGTTGGAGCCTAG+CGG | - | chr4.4:23261292-23261311 | MS.gene33735:CDS | 60.0% |
| ! | TGGAGGGGAGGGGATGGTTT+TGG | - | chr4.4:23260910-23260929 | MS.gene33735:intron | 60.0% |
| !! | AGAGTGATGGCGGCCACGAA+GGG | + | chr4.4:23261364-23261383 | None:intergenic | 60.0% |
| !! | GGGGTAGGAAAGGCTTTGGG+GGG | + | chr4.4:23261223-23261242 | None:intergenic | 60.0% |
| !! | GTAGGAAAGGCTTTGGGGGG+TGG | + | chr4.4:23261220-23261239 | None:intergenic | 60.0% |
| !! | TAGAGTGATGGCGGCCACGA+AGG | + | chr4.4:23261365-23261384 | None:intergenic | 60.0% |
| CCCCAGATGCGTTGGAACGC+GGG | - | chr4.4:23261331-23261350 | MS.gene33735:CDS | 65.0% | |
| CCCCCAGATGCGTTGGAACG+CGG | - | chr4.4:23261330-23261349 | MS.gene33735:CDS | 65.0% | |
| CCCGCGTTCCAACGCATCTG+GGG | + | chr4.4:23261334-23261353 | None:intergenic | 65.0% | |
| CCGCGTTCCAACGCATCTGG+GGG | + | chr4.4:23261333-23261352 | None:intergenic | 65.0% | |
| CGAGTTTGGAGGGGAGGGGA+TGG | - | chr4.4:23260904-23260923 | MS.gene33735:intron | 65.0% | |
| CGTTCCAACGCATCTGGGGG+AGG | + | chr4.4:23261330-23261349 | None:intergenic | 65.0% | |
| CTCCCGCGTTCCAACGCATC+TGG | + | chr4.4:23261336-23261355 | None:intergenic | 65.0% | |
| GGAGTTTGGAGGGGAGGGGT+AGG | + | chr4.4:23261238-23261257 | None:intergenic | 65.0% | |
| ! | TTGGGAGGGGAGGGCTTTGG+GGG | - | chr4.4:23260969-23260988 | MS.gene33735:intron | 65.0% |
| GTGGCCTCCCCCAGATGCGT+TGG | - | chr4.4:23261323-23261342 | MS.gene33735:CDS | 70.0% | |
| CGCGGGAGTAGCGCCCTTCG+TGG | - | chr4.4:23261348-23261367 | MS.gene33735:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 23259935 | 23261441 | 23259935 | ID=MS.gene33735 |
| chr4.4 | mRNA | 23259935 | 23261441 | 23259935 | ID=MS.gene33735.t1;Parent=MS.gene33735 |
| chr4.4 | exon | 23261232 | 23261441 | 23261232 | ID=MS.gene33735.t1.exon1;Parent=MS.gene33735.t1 |
| chr4.4 | CDS | 23261232 | 23261441 | 23261232 | ID=cds.MS.gene33735.t1;Parent=MS.gene33735.t1 |
| chr4.4 | exon | 23261033 | 23261150 | 23261033 | ID=MS.gene33735.t1.exon2;Parent=MS.gene33735.t1 |
| chr4.4 | CDS | 23261033 | 23261150 | 23261033 | ID=cds.MS.gene33735.t1;Parent=MS.gene33735.t1 |
| chr4.4 | exon | 23259935 | 23260083 | 23259935 | ID=MS.gene33735.t1.exon3;Parent=MS.gene33735.t1 |
| chr4.4 | CDS | 23259935 | 23260083 | 23259935 | ID=cds.MS.gene33735.t1;Parent=MS.gene33735.t1 |
| Gene Sequence |
| Protein sequence |
