AlfalfaGEDB | MS.gene35460

M. sativa cultivar XinJiangDaYe / MS.gene35460

KEGG: -
GO: GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0046942 GO:0051179 GO:0051234 GO:0071702
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35460.t1	ADD71138.1	98.6	360	5	0	1	360	89	448	3.90E-195	690.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35460.t1	Q9SJE8	45.1	366	190	4	1	359	69	430	5.1e-87	322.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35460.t1	D4NZK1	98.6	360	5	0	1	360	89	448	2.8e-195	690.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene35460	0.842562	2.40E-58	-1.69E-46
MS.gene050329	MS.gene35460	0.803063	4.17E-49	-1.69E-46
MS.gene051158	MS.gene35460	0.810915	9.09E-51	-1.69E-46
MS.gene051385	MS.gene35460	0.804521	2.08E-49	-1.69E-46
MS.gene051996	MS.gene35460	0.807404	5.14E-50	-1.69E-46
MS.gene052211	MS.gene35460	0.834544	2.82E-56	-1.69E-46
MS.gene05233	MS.gene35460	0.803107	4.08E-49	-1.69E-46
MS.gene05240	MS.gene35460	0.800407	1.46E-48	-1.69E-46
MS.gene05244	MS.gene35460	0.818355	2.05E-52	-1.69E-46
MS.gene053403	MS.gene35460	0.820867	5.47E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 62 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTCGAAGATAACT+TGG	0.544545	2.2:-11659024	MS.gene35460:intron
AAAAGATTGGAAACCTATCA+AGG	0.530845	2.2:-11658581	MS.gene35460:CDS
AATCTGAAACGACCATGGCA+GGG	0.657967	2.2:+11658627	None:intergenic
AATGAAGCCACGGTTACAAC+AGG	0.480765	2.2:+11658191	None:intergenic
AATTGACACTGCACAAGATA+GGG	0.540293	2.2:-11659368	MS.gene35460:CDS
AGATCACCACCAGCCCAAAC+AGG	0.433992	2.2:+11659289	None:intergenic
AGATTTATGCCACAAACCTA+AGG	0.581612	2.2:-11658265	MS.gene35460:CDS
AGGGTAACAACAATTCTAGT+TGG	0.536338	2.2:-11659349	MS.gene35460:CDS
AGTTGTTAAGGAAGCCATTA+AGG	0.268610	2.2:+11658535	None:intergenic
ATAATTGAACCTATACTTCT+TGG	0.239685	2.2:-11659637	MS.gene35460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAGTCGAAGATAACT+TGG	-	chr2.2:11658703-11658722	MS.gene35460:intron	30.0%
AAAAGATTGGAAACCTATCA+AGG	-	chr2.2:11659146-11659165	MS.gene35460:intron	30.0%
ATGAAGGCTAGATATGATTA+TGG	-	chr2.2:11658273-11658292	MS.gene35460:CDS	30.0%
ATGGTTCATACAATTTCAAG+AGG	-	chr2.2:11658060-11658079	MS.gene35460:CDS	30.0%
ATTAAGATGAGCATAGAAAC+AGG	-	chr2.2:11659359-11659378	MS.gene35460:CDS	30.0%
CCATGATCAAAACAAAATTG+TGG	-	chr2.2:11659486-11659505	MS.gene35460:CDS	30.0%
CTACTACGATTTACATATAC+GGG	-	chr2.2:11658978-11658997	MS.gene35460:intron	30.0%
CTTGGAAAAGGTTTAAATAG+AGG	-	chr2.2:11657991-11658010	MS.gene35460:CDS	30.0%
TCAAATATGTTGAAAAGTCG+TGG	+	chr2.2:11658949-11658968	None:intergenic	30.0%
TCATCAAATCAAAATGTCCA+TGG	-	chr2.2:11658772-11658791	MS.gene35460:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	11657983	11659766	11657983	ID=MS.gene35460
chr2.2	mRNA	11657983	11659766	11657983	ID=MS.gene35460.t1;Parent=MS.gene35460
chr2.2	exon	11659617	11659766	11659617	ID=MS.gene35460.t1.exon1;Parent=MS.gene35460.t1
chr2.2	CDS	11659617	11659766	11659617	ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1
chr2.2	exon	11659239	11659511	11659239	ID=MS.gene35460.t1.exon2;Parent=MS.gene35460.t1
chr2.2	CDS	11659239	11659511	11659239	ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1
chr2.2	exon	11659025	11659131	11659025	ID=MS.gene35460.t1.exon3;Parent=MS.gene35460.t1
chr2.2	CDS	11659025	11659131	11659025	ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1
chr2.2	exon	11658527	11658670	11658527	ID=MS.gene35460.t1.exon4;Parent=MS.gene35460.t1
chr2.2	CDS	11658527	11658670	11658527	ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1
chr2.2	exon	11657983	11658429	11657983	ID=MS.gene35460.t1.exon5;Parent=MS.gene35460.t1
chr2.2	CDS	11657983	11658429	11657983	ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1

Gene Sequence

>MS.gene35460

GAGCAACACTTGGAAAAGGTTTAAATAGAGGTTTAGCAACATTTTTGGCTGGTGTTCTTGGACTTGGATCTTATTACATGGTTCATACAATTTCAAGAGGAAATACAATAATTGAACCTATACTTCTTGGAATCATAATATTTCTAGCAAGTAATATTTACATCTCTAATTGTATATTTGATAATTTCACTAGTAGGATCTGTCTAATACAATACTAACCAATACAATTTTTATTTTTTTTTTGAATTATTTCAGCTGCAGGGGCTACATATATTCGATTTATACCTCTAATGAAGGCTAGATATGATTATGGTTTGGTAGTGTTTATCTTGACATTTTGTTTGGTATCTGTATCAAGTTATAGAGACCATGAGATAATTGACACTGCACAAGATAGGGTAACAACAATTCTAGTTGGTGGATTAATTTCTGTGTTGGTTAACATTTTCTTGTGCCCTGTTTGGGCTGGTGGTGATCTTCACAATCTAGCATCAAAAAACATTGAAAAACTTGGCAACTTTTTAGAAGGTGCGCAAGCAGGTCAATTTTGTAAATTGTGATTATGGAATTATGTGCATGTACTAGTTTTAATGTTTCATAATTGTTGAAATTGATTAATTCTTGGAAAATTGTAGGTTTTGGAGATGAATATTTTGGAACACTAGATGCTGGAGAATCAAATAAATCATTTATGCAAGGATATAAGAGTGTTCTTAATGCAAAACAAGTCGAAGATAACTTGGTGAGGAAAAAGAAACCAAAATTATGTTATTGTAAATTGTAATTGACTCATCAAATCAAAATGTCCATGGAATATTTCTCAATATATATTGAGAAAAATAAACTGAAAACAACTTAGTACCTAGTTGAACATTGACATGTCTCCAATTTAGTTCATGTGGGGACTAATTTGTCATAATTTATTTTTCTCAAAAACTAAAAAGATCACAAAGTGTCTTCACTCCACGACTTTTCAACATATTTGAATTTGATATCTACTACGATTTACATATACGGGTATTGCTCTCACAACTTCGAATTTCTAAATCCGTCTTTGTCTACTCTGACTTATTAATTAGTTTAATACCTTTTGTAGGTCAATTTTGCAAGGTGGGAACCCTGCCATGGTCGTTTCAGATTCCAATATCCTTGGCAACAATATCAAAAGATTGGAAACCTATCAAGGCAATGTGCTTATCGGATTGATGCCCTTAATGGCTTCCTTAACAACTTCACTAAGGTACTAGTTGACATGATATTTTTATTGTAAAGTTTAGTAGAGTATTTCTTGGAGAAATGAATGACTTATATTTTAATATGTTAAACTTTTTTTATAGACACCAAAGGAAATCAAAAGCAAAATACAAGAACCATGCATTAAGATGAGCATAGAAACAGGAAAGGCTTTAAAGCAATTATCAATATCAATCCAAAAAACGGTTCCACCAACCTCAGCAGAAACTCACATTGCAACATCTAAGATTTATGCCACAAACCTAAGGTCCATGATCAAAACAAAATTGTGGGAAGACACAAATTTGTTTGAGGTTGTTCCTGTTGTAACCGTGGCTTCATTATTGCTTGATGTAGTTTCTTCCACTGAGAAACTTGCAGAATCAATACAAGAACTATCCACCTTAGCAAAATTTAAGAACAAGGAAAGTAAAGTTGCTGCAGATGATCAAAAAGAAGTTCCACAAACATGCAGTGATAGTAGTGGACCACAACATGTTATTATAATTAACCAGCCTTGTACAAAATTGACACATAATGGGAGTTCCTAA

Protein sequence

>MS.gene35460.t1

EQHLEKVUIEVUQHFWLVFLDLDLITWFIQFQEEIQULNLYFLESUYFUQLQGLHIFDLYLUURLDMIMVWUCLSUHFVWYLYQVIETMRULTLHKIGUQQFULVDUFLCWLTFSCALFGLVVIFTIUHQKTLKNLATFUKVLEMNILEHUMLENQINHLCKDIRVFLMQNKSKITWSILQGGNPAMVVSDSNILGNNIKRLETYQGNVLIGLMPLMASLTTSLRHQRKSKAKYKNHALRUAUKQERLUSNYQYQSKKRFHQPQQKLTLQHLRFMPQTUGPUSKQNCGKTQICLRLFLLUPWLHYCLMUFLPLRNLQNQYKNYPPUQNLRTRKVKLLQMIKKKFHKHAVIVVDHNMLLULTSLVQNUHIMGVP