Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35460.t1 | ADD71138.1 | 98.6 | 360 | 5 | 0 | 1 | 360 | 89 | 448 | 3.90E-195 | 690.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35460.t1 | Q9SJE8 | 45.1 | 366 | 190 | 4 | 1 | 359 | 69 | 430 | 5.1e-87 | 322.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35460.t1 | D4NZK1 | 98.6 | 360 | 5 | 0 | 1 | 360 | 89 | 448 | 2.8e-195 | 690.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049549 | MS.gene35460 | 0.842562 | 2.40E-58 | -1.69E-46 |
MS.gene050329 | MS.gene35460 | 0.803063 | 4.17E-49 | -1.69E-46 |
MS.gene051158 | MS.gene35460 | 0.810915 | 9.09E-51 | -1.69E-46 |
MS.gene051385 | MS.gene35460 | 0.804521 | 2.08E-49 | -1.69E-46 |
MS.gene051996 | MS.gene35460 | 0.807404 | 5.14E-50 | -1.69E-46 |
MS.gene052211 | MS.gene35460 | 0.834544 | 2.82E-56 | -1.69E-46 |
MS.gene05233 | MS.gene35460 | 0.803107 | 4.08E-49 | -1.69E-46 |
MS.gene05240 | MS.gene35460 | 0.800407 | 1.46E-48 | -1.69E-46 |
MS.gene05244 | MS.gene35460 | 0.818355 | 2.05E-52 | -1.69E-46 |
MS.gene053403 | MS.gene35460 | 0.820867 | 5.47E-53 | -1.69E-46 |
MS.gene053406 | MS.gene35460 | 0.861532 | 9.60E-64 | -1.69E-46 |
MS.gene054120 | MS.gene35460 | 0.851087 | 1.11E-60 | -1.69E-46 |
MS.gene054146 | MS.gene35460 | 0.810016 | 1.42E-50 | -1.69E-46 |
MS.gene054421 | MS.gene35460 | 0.834202 | 3.43E-56 | -1.69E-46 |
MS.gene054742 | MS.gene35460 | 0.831145 | 1.97E-55 | -1.69E-46 |
MS.gene055240 | MS.gene35460 | 0.822158 | 2.75E-53 | -1.69E-46 |
MS.gene055595 | MS.gene35460 | 0.822792 | 1.96E-53 | -1.69E-46 |
MS.gene055597 | MS.gene35460 | 0.819449 | 1.15E-52 | -1.69E-46 |
MS.gene056330 | MS.gene35460 | 0.835879 | 1.30E-56 | -1.69E-46 |
MS.gene056590 | MS.gene35460 | 0.802109 | 6.56E-49 | -1.69E-46 |
MS.gene056591 | MS.gene35460 | 0.802518 | 5.40E-49 | -1.69E-46 |
MS.gene056680 | MS.gene35460 | 0.803789 | 2.95E-49 | -1.69E-46 |
MS.gene056920 | MS.gene35460 | 0.832314 | 1.01E-55 | -1.69E-46 |
MS.gene056922 | MS.gene35460 | 0.809951 | 1.47E-50 | -1.69E-46 |
MS.gene056923 | MS.gene35460 | 0.822853 | 1.90E-53 | -1.69E-46 |
MS.gene056924 | MS.gene35460 | 0.808844 | 2.54E-50 | -1.69E-46 |
MS.gene056925 | MS.gene35460 | 0.805607 | 1.23E-49 | -1.69E-46 |
MS.gene059328 | MS.gene35460 | 0.803271 | 3.78E-49 | -1.69E-46 |
MS.gene059955 | MS.gene35460 | 0.80394 | 2.74E-49 | -1.69E-46 |
MS.gene060087 | MS.gene35460 | 0.828553 | 8.43E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 62 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAATTGAACCTATACTTCT+TGG | 0.239685 | 2.2:-11659637 | MS.gene35460:CDS |
GATATTGTTGCCAAGGATAT+TGG | 0.241933 | 2.2:+11658604 | None:intergenic |
AGTTGTTAAGGAAGCCATTA+AGG | 0.268610 | 2.2:+11658535 | None:intergenic |
TATCGGATTGATGCCCTTAA+TGG | 0.282687 | 2.2:-11658549 | MS.gene35460:CDS |
TGTACAAAATTGACACATAA+TGG | 0.288079 | 2.2:-11657993 | MS.gene35460:CDS |
TTGGCTGGTGTTCTTGGACT+TGG | 0.319754 | 2.2:-11659700 | MS.gene35460:CDS |
ATGAAGGCTAGATATGATTA+TGG | 0.325434 | 2.2:-11659454 | MS.gene35460:CDS |
GATAAGCACATTGCCTTGAT+AGG | 0.359354 | 2.2:+11658568 | None:intergenic |
CTTGGAAAAGGTTTAAATAG+AGG | 0.383071 | 2.2:-11659736 | MS.gene35460:CDS |
TCATATCTAGCCTTCATTAG+AGG | 0.384146 | 2.2:+11659460 | None:intergenic |
TTCTTGTGCCCTGTTTGGGC+TGG | 0.387615 | 2.2:-11659298 | MS.gene35460:CDS |
TATCAAGGCAATGTGCTTAT+CGG | 0.393258 | 2.2:-11658566 | MS.gene35460:CDS |
GATCATGGACCTTAGGTTTG+TGG | 0.393496 | 2.2:+11658256 | None:intergenic |
TGGCAACAATATCAAAAGAT+TGG | 0.402570 | 2.2:-11658594 | MS.gene35460:CDS |
GTACCTTAGTGAAGTTGTTA+AGG | 0.410620 | 2.2:+11658523 | None:intergenic |
TAATTGACACTGCACAAGAT+AGG | 0.418272 | 2.2:-11659369 | MS.gene35460:CDS |
CTACTATCACTGCATGTTTG+TGG | 0.427671 | 2.2:+11658050 | None:intergenic |
TTGTGCCCTGTTTGGGCTGG+TGG | 0.433334 | 2.2:-11659295 | MS.gene35460:CDS |
ATTATGATTCCAAGAAGTAT+AGG | 0.433596 | 2.2:+11659628 | None:intergenic |
AGATCACCACCAGCCCAAAC+AGG | 0.433992 | 2.2:+11659289 | None:intergenic |
GTACAAAATTGACACATAAT+GGG | 0.436412 | 2.2:-11657992 | MS.gene35460:CDS |
GGCTAGATATGATTATGGTT+TGG | 0.440433 | 2.2:-11659449 | MS.gene35460:CDS |
GAATCTGAAACGACCATGGC+AGG | 0.446207 | 2.2:+11658626 | None:intergenic |
GTTGTTAAGGAAGCCATTAA+GGG | 0.460812 | 2.2:+11658536 | None:intergenic |
GTTTCAGATTCCAATATCCT+TGG | 0.467661 | 2.2:-11658614 | MS.gene35460:CDS |
ATTAAGATGAGCATAGAAAC+AGG | 0.468944 | 2.2:-11658368 | MS.gene35460:CDS |
AATGAAGCCACGGTTACAAC+AGG | 0.480765 | 2.2:+11658191 | None:intergenic |
TTTGAATTATTTCAGCTGCA+GGG | 0.486846 | 2.2:-11659504 | MS.gene35460:intron |
TCGATTTATACCTCTAATGA+AGG | 0.491939 | 2.2:-11659470 | MS.gene35460:CDS |
CATGATCAAAACAAAATTGT+GGG | 0.502020 | 2.2:-11658240 | MS.gene35460:CDS |
TCTATGCTCATCTTAATGCA+TGG | 0.508658 | 2.2:+11658374 | None:intergenic |
GTGCAGTGTCAATTATCTCA+TGG | 0.511026 | 2.2:+11659377 | None:intergenic |
GCAGGAGCAACACTTGGAAA+AGG | 0.511844 | 2.2:-11659748 | None:intergenic |
TGGACTTGGATCTTATTACA+TGG | 0.514673 | 2.2:-11659686 | MS.gene35460:CDS |
TGGTGGATTAATTTCTGTGT+TGG | 0.515117 | 2.2:-11659329 | MS.gene35460:CDS |
GTAACAACAATTCTAGTTGG+TGG | 0.515822 | 2.2:-11659346 | MS.gene35460:CDS |
CTTCCTTAACAACTTCACTA+AGG | 0.516652 | 2.2:-11658526 | MS.gene35460:intron |
TGAGTTTCTGCTGAGGTTGG+TGG | 0.528304 | 2.2:+11658302 | None:intergenic |
AAAAGATTGGAAACCTATCA+AGG | 0.530845 | 2.2:-11658581 | MS.gene35460:CDS |
AGGGTAACAACAATTCTAGT+TGG | 0.536338 | 2.2:-11659349 | MS.gene35460:CDS |
CCATGATCAAAACAAAATTG+TGG | 0.536457 | 2.2:-11658241 | MS.gene35460:CDS |
AATTGACACTGCACAAGATA+GGG | 0.540293 | 2.2:-11659368 | MS.gene35460:CDS |
GGAAGACACAAATTTGTTTG+AGG | 0.543623 | 2.2:-11658219 | MS.gene35460:CDS |
AAAACAAGTCGAAGATAACT+TGG | 0.544545 | 2.2:-11659024 | MS.gene35460:intron |
CTTAGCAAAATTTAAGAACA+AGG | 0.557015 | 2.2:-11658108 | MS.gene35460:CDS |
TTGAATTATTTCAGCTGCAG+GGG | 0.563412 | 2.2:-11659503 | MS.gene35460:intron |
GCACATGCAGGAGCAACACT+TGG | 0.568214 | 2.2:-11659754 | None:intergenic |
ATGTGAGTTTCTGCTGAGGT+TGG | 0.568552 | 2.2:+11658299 | None:intergenic |
GCAAGGTGGGAACCCTGCCA+TGG | 0.570019 | 2.2:-11658639 | MS.gene35460:CDS |
TCAAATAAATCATTTATGCA+AGG | 0.574471 | 2.2:-11659068 | MS.gene35460:CDS |
ATGGTTCATACAATTTCAAG+AGG | 0.574977 | 2.2:-11659667 | MS.gene35460:CDS |
AGATTTATGCCACAAACCTA+AGG | 0.581612 | 2.2:-11658265 | MS.gene35460:CDS |
ATCAAGCAATAATGAAGCCA+CGG | 0.596047 | 2.2:+11658181 | None:intergenic |
TTAATTATAATAACATGTTG+TGG | 0.607316 | 2.2:+11658023 | None:intergenic |
GATGAGCATAGAAACAGGAA+AGG | 0.631774 | 2.2:-11658363 | MS.gene35460:CDS |
CAAACATGCAGTGATAGTAG+TGG | 0.633845 | 2.2:-11658047 | MS.gene35460:CDS |
TGCAATGTGAGTTTCTGCTG+AGG | 0.637883 | 2.2:+11658295 | None:intergenic |
TGATTCTGCAAGTTTCTCAG+TGG | 0.649200 | 2.2:+11658148 | None:intergenic |
ATTGGAATCTGAAACGACCA+TGG | 0.657737 | 2.2:+11658622 | None:intergenic |
AATCTGAAACGACCATGGCA+GGG | 0.657967 | 2.2:+11658627 | None:intergenic |
GGTTGTTCCTGTTGTAACCG+TGG | 0.667584 | 2.2:-11658198 | MS.gene35460:CDS |
GATCACCACCAGCCCAAACA+GGG | 0.679414 | 2.2:+11659290 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTACAATAACATAATTT+TGG | + | chr2.2:11658743-11658762 | None:intergenic | 10.0% |
!! | TTAATTATAATAACATGTTG+TGG | + | chr2.2:11659707-11659726 | None:intergenic | 15.0% |
!!! | AATTTTGTAAATTGTGATTA+TGG | - | chr2.2:11658526-11658545 | MS.gene35460:intron | 15.0% |
!! | ATATATTGAGAAATATTCCA+TGG | + | chr2.2:11658792-11658811 | None:intergenic | 20.0% |
!! | ATCAATATCAATCCAAAAAA+CGG | - | chr2.2:11659400-11659419 | MS.gene35460:CDS | 20.0% |
!! | ATTAATTCTTGGAAAATTGT+AGG | - | chr2.2:11658596-11658615 | MS.gene35460:CDS | 20.0% |
!! | TCAAAAAACATTGAAAAACT+TGG | - | chr2.2:11658474-11658493 | MS.gene35460:intron | 20.0% |
!! | TCAAATAAATCATTTATGCA+AGG | - | chr2.2:11658659-11658678 | MS.gene35460:intron | 20.0% |
!! | TGTTGAAATTGATTAATTCT+TGG | - | chr2.2:11658585-11658604 | MS.gene35460:CDS | 20.0% |
!!! | ATTAGTTTAATACCTTTTGT+AGG | - | chr2.2:11659057-11659076 | MS.gene35460:CDS | 20.0% |
!!! | TATTTGATAATTTCACTAGT+AGG | - | chr2.2:11658157-11658176 | MS.gene35460:CDS | 20.0% |
! | ATAATTGAACCTATACTTCT+TGG | - | chr2.2:11658090-11658109 | MS.gene35460:CDS | 25.0% |
! | CATGATCAAAACAAAATTGT+GGG | - | chr2.2:11659487-11659506 | MS.gene35460:CDS | 25.0% |
! | CTTAGCAAAATTTAAGAACA+AGG | - | chr2.2:11659619-11659638 | MS.gene35460:CDS | 25.0% |
! | GTACAAAATTGACACATAAT+GGG | - | chr2.2:11659735-11659754 | MS.gene35460:CDS | 25.0% |
! | TCTACTACGATTTACATATA+CGG | - | chr2.2:11658977-11658996 | MS.gene35460:intron | 25.0% |
! | TGTACAAAATTGACACATAA+TGG | - | chr2.2:11659734-11659753 | MS.gene35460:CDS | 25.0% |
!! | AAGTTTAGTAGAGTATTTCT+TGG | - | chr2.2:11659252-11659271 | MS.gene35460:CDS | 25.0% |
!! | ATTATGATTCCAAGAAGTAT+AGG | + | chr2.2:11658102-11658121 | None:intergenic | 25.0% |
!! | CTTGTTCTTAAATTTTGCTA+AGG | + | chr2.2:11659621-11659640 | None:intergenic | 25.0% |
!! | GTTTATCTTGACATTTTGTT+TGG | - | chr2.2:11658305-11658324 | MS.gene35460:CDS | 25.0% |
!! | TTATGTGTCAATTTTGTACA+AGG | + | chr2.2:11659734-11659753 | None:intergenic | 25.0% |
!!! | ACTTTTTTTATAGACACCAA+AGG | - | chr2.2:11659307-11659326 | MS.gene35460:CDS | 25.0% |
!!! | ATTTTGCTTTTGATTTCCTT+TGG | + | chr2.2:11659326-11659345 | None:intergenic | 25.0% |
AAAACAAGTCGAAGATAACT+TGG | - | chr2.2:11658703-11658722 | MS.gene35460:intron | 30.0% | |
AAAAGATTGGAAACCTATCA+AGG | - | chr2.2:11659146-11659165 | MS.gene35460:intron | 30.0% | |
ATGAAGGCTAGATATGATTA+TGG | - | chr2.2:11658273-11658292 | MS.gene35460:CDS | 30.0% | |
ATGGTTCATACAATTTCAAG+AGG | - | chr2.2:11658060-11658079 | MS.gene35460:CDS | 30.0% | |
ATTAAGATGAGCATAGAAAC+AGG | - | chr2.2:11659359-11659378 | MS.gene35460:CDS | 30.0% | |
CCATGATCAAAACAAAATTG+TGG | - | chr2.2:11659486-11659505 | MS.gene35460:CDS | 30.0% | |
CTACTACGATTTACATATAC+GGG | - | chr2.2:11658978-11658997 | MS.gene35460:intron | 30.0% | |
CTTGGAAAAGGTTTAAATAG+AGG | - | chr2.2:11657991-11658010 | MS.gene35460:CDS | 30.0% | |
TCAAATATGTTGAAAAGTCG+TGG | + | chr2.2:11658949-11658968 | None:intergenic | 30.0% | |
TCATCAAATCAAAATGTCCA+TGG | - | chr2.2:11658772-11658791 | MS.gene35460:intron | 30.0% | |
TCGATTTATACCTCTAATGA+AGG | - | chr2.2:11658257-11658276 | MS.gene35460:CDS | 30.0% | |
TGGCAACAATATCAAAAGAT+TGG | - | chr2.2:11659133-11659152 | MS.gene35460:intron | 30.0% | |
TTGCAAAATTGACCTACAAA+AGG | + | chr2.2:11659072-11659091 | None:intergenic | 30.0% | |
TTTGAATTATTTCAGCTGCA+GGG | - | chr2.2:11658223-11658242 | MS.gene35460:CDS | 30.0% | |
! | AAACTTGGCAACTTTTTAGA+AGG | - | chr2.2:11658489-11658508 | MS.gene35460:intron | 30.0% |
! | ATCTTTTGATATTGTTGCCA+AGG | + | chr2.2:11659133-11659152 | None:intergenic | 30.0% |
! | GTTCTTAAATTTTGCTAAGG+TGG | + | chr2.2:11659618-11659637 | None:intergenic | 30.0% |
! | TAGAGGTTTAGCAACATTTT+TGG | - | chr2.2:11658008-11658027 | MS.gene35460:CDS | 30.0% |
! | TCTTGGAAAATTGTAGGTTT+TGG | - | chr2.2:11658602-11658621 | MS.gene35460:CDS | 30.0% |
! | TTTTGAATTATTTCAGCTGC+AGG | - | chr2.2:11658222-11658241 | MS.gene35460:CDS | 30.0% |
! | TTTTGTAGGTCAATTTTGCA+AGG | - | chr2.2:11659071-11659090 | MS.gene35460:CDS | 30.0% |
!!! | CCACAATTTTGTTTTGATCA+TGG | + | chr2.2:11659489-11659508 | None:intergenic | 30.0% |
!!! | GGTTTTGGAGATGAATATTT+TGG | - | chr2.2:11658617-11658636 | MS.gene35460:CDS | 30.0% |
AATTGACACTGCACAAGATA+GGG | - | chr2.2:11658359-11658378 | MS.gene35460:CDS | 35.0% | |
AGACATGTCAATGTTCAACT+AGG | + | chr2.2:11658847-11658866 | None:intergenic | 35.0% | |
AGATTTATGCCACAAACCTA+AGG | - | chr2.2:11659462-11659481 | MS.gene35460:CDS | 35.0% | |
AGGGTAACAACAATTCTAGT+TGG | - | chr2.2:11658378-11658397 | MS.gene35460:CDS | 35.0% | |
AGTTGTTAAGGAAGCCATTA+AGG | + | chr2.2:11659195-11659214 | None:intergenic | 35.0% | |
ATCAAGCAATAATGAAGCCA+CGG | + | chr2.2:11659549-11659568 | None:intergenic | 35.0% | |
CTTCCTTAACAACTTCACTA+AGG | - | chr2.2:11659201-11659220 | MS.gene35460:intron | 35.0% | |
GATATTGTTGCCAAGGATAT+TGG | + | chr2.2:11659126-11659145 | None:intergenic | 35.0% | |
GGCTAGATATGATTATGGTT+TGG | - | chr2.2:11658278-11658297 | MS.gene35460:CDS | 35.0% | |
GTACCTTAGTGAAGTTGTTA+AGG | + | chr2.2:11659207-11659226 | None:intergenic | 35.0% | |
GTTGTTAAGGAAGCCATTAA+GGG | + | chr2.2:11659194-11659213 | None:intergenic | 35.0% | |
GTTTCAGATTCCAATATCCT+TGG | - | chr2.2:11659113-11659132 | MS.gene35460:intron | 35.0% | |
TAAGTCAGAGTAGACAAAGA+CGG | + | chr2.2:11659034-11659053 | None:intergenic | 35.0% | |
TAATTGACACTGCACAAGAT+AGG | - | chr2.2:11658358-11658377 | MS.gene35460:CDS | 35.0% | |
TATCAAGGCAATGTGCTTAT+CGG | - | chr2.2:11659161-11659180 | MS.gene35460:intron | 35.0% | |
TCTATGCTCATCTTAATGCA+TGG | + | chr2.2:11659356-11659375 | None:intergenic | 35.0% | |
TGGACTTGGATCTTATTACA+TGG | - | chr2.2:11658041-11658060 | MS.gene35460:CDS | 35.0% | |
TTGAATTATTTCAGCTGCAG+GGG | - | chr2.2:11658224-11658243 | MS.gene35460:CDS | 35.0% | |
! | GGAAGACACAAATTTGTTTG+AGG | - | chr2.2:11659508-11659527 | MS.gene35460:intron | 35.0% |
! | GTAACAACAATTCTAGTTGG+TGG | - | chr2.2:11658381-11658400 | MS.gene35460:CDS | 35.0% |
! | GTCTCCAATTTAGTTCATGT+GGG | - | chr2.2:11658863-11658882 | MS.gene35460:intron | 35.0% |
! | TCATATCTAGCCTTCATTAG+AGG | + | chr2.2:11658270-11658289 | None:intergenic | 35.0% |
! | TCTCCAATTTAGTTCATGTG+GGG | - | chr2.2:11658864-11658883 | MS.gene35460:intron | 35.0% |
! | TGTCTCCAATTTAGTTCATG+TGG | - | chr2.2:11658862-11658881 | MS.gene35460:intron | 35.0% |
!! | TGGTGGATTAATTTCTGTGT+TGG | - | chr2.2:11658398-11658417 | MS.gene35460:CDS | 35.0% |
!!! | TATTTTGGAACACTAGATGC+TGG | - | chr2.2:11658632-11658651 | MS.gene35460:CDS | 35.0% |
!!! | TTGTTTTGATCATGGACCTT+AGG | + | chr2.2:11659481-11659500 | None:intergenic | 35.0% |
AGTCCCCACATGAACTAAAT+TGG | + | chr2.2:11658870-11658889 | None:intergenic | 40.0% | |
CAAACATGCAGTGATAGTAG+TGG | - | chr2.2:11659680-11659699 | MS.gene35460:CDS | 40.0% | |
CTACTATCACTGCATGTTTG+TGG | + | chr2.2:11659680-11659699 | None:intergenic | 40.0% | |
GATAAGCACATTGCCTTGAT+AGG | + | chr2.2:11659162-11659181 | None:intergenic | 40.0% | |
GATGAGCATAGAAACAGGAA+AGG | - | chr2.2:11659364-11659383 | MS.gene35460:CDS | 40.0% | |
GTGCAGTGTCAATTATCTCA+TGG | + | chr2.2:11658353-11658372 | None:intergenic | 40.0% | |
TATCGGATTGATGCCCTTAA+TGG | - | chr2.2:11659178-11659197 | MS.gene35460:intron | 40.0% | |
TGATTCTGCAAGTTTCTCAG+TGG | + | chr2.2:11659582-11659601 | None:intergenic | 40.0% | |
! | AAGTCGAAGATAACTTGGTG+AGG | - | chr2.2:11658708-11658727 | MS.gene35460:intron | 40.0% |
! | ACATTTTCTTGTGCCCTGTT+TGG | - | chr2.2:11658424-11658443 | MS.gene35460:intron | 40.0% |
! | ATTGGAATCTGAAACGACCA+TGG | + | chr2.2:11659108-11659127 | None:intergenic | 40.0% |
! | CATTTTCTTGTGCCCTGTTT+GGG | - | chr2.2:11658425-11658444 | MS.gene35460:intron | 40.0% |
! | GTAGGTCAATTTTGCAAGGT+GGG | - | chr2.2:11659075-11659094 | MS.gene35460:CDS | 40.0% |
! | GTGTCAATTTTGTACAAGGC+TGG | + | chr2.2:11659730-11659749 | None:intergenic | 40.0% |
! | TGTAGGTCAATTTTGCAAGG+TGG | - | chr2.2:11659074-11659093 | MS.gene35460:CDS | 40.0% |
!!! | ACATTTTTGGCTGGTGTTCT+TGG | - | chr2.2:11658021-11658040 | MS.gene35460:CDS | 40.0% |
!!! | GGTTTAGCAACATTTTTGGC+TGG | - | chr2.2:11658012-11658031 | MS.gene35460:CDS | 40.0% |
AATGAAGCCACGGTTACAAC+AGG | + | chr2.2:11659539-11659558 | None:intergenic | 45.0% | |
ATGTGAGTTTCTGCTGAGGT+TGG | + | chr2.2:11659431-11659450 | None:intergenic | 45.0% | |
GATCATGGACCTTAGGTTTG+TGG | + | chr2.2:11659474-11659493 | None:intergenic | 45.0% | |
TGCAATGTGAGTTTCTGCTG+AGG | + | chr2.2:11659435-11659454 | None:intergenic | 45.0% | |
! | AATCTGAAACGACCATGGCA+GGG | + | chr2.2:11659103-11659122 | None:intergenic | 45.0% |
!! | TTTTTAGAAGGTGCGCAAGC+AGG | - | chr2.2:11658501-11658520 | MS.gene35460:intron | 45.0% |
!!! | AGGTTGGTGGAACCGTTTTT+TGG | + | chr2.2:11659415-11659434 | None:intergenic | 45.0% |
!! | AAAAAAAATAAAAATTGTAT+TGG | + | chr2.2:11658204-11658223 | None:intergenic | 5.0% |
GGTTGTTCCTGTTGTAACCG+TGG | - | chr2.2:11659529-11659548 | MS.gene35460:intron | 50.0% | |
TGAGTTTCTGCTGAGGTTGG+TGG | + | chr2.2:11659428-11659447 | None:intergenic | 50.0% | |
TTGGCTGGTGTTCTTGGACT+TGG | - | chr2.2:11658027-11658046 | MS.gene35460:CDS | 50.0% | |
! | GAATCTGAAACGACCATGGC+AGG | + | chr2.2:11659104-11659123 | None:intergenic | 50.0% |
AGATCACCACCAGCCCAAAC+AGG | + | chr2.2:11658441-11658460 | None:intergenic | 55.0% | |
GATCACCACCAGCCCAAACA+GGG | + | chr2.2:11658440-11658459 | None:intergenic | 55.0% | |
TTCTTGTGCCCTGTTTGGGC+TGG | - | chr2.2:11658429-11658448 | MS.gene35460:intron | 55.0% | |
! | TTGTGCCCTGTTTGGGCTGG+TGG | - | chr2.2:11658432-11658451 | MS.gene35460:intron | 60.0% |
GCAAGGTGGGAACCCTGCCA+TGG | - | chr2.2:11659088-11659107 | MS.gene35460:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 11657983 | 11659766 | 11657983 | ID=MS.gene35460 |
chr2.2 | mRNA | 11657983 | 11659766 | 11657983 | ID=MS.gene35460.t1;Parent=MS.gene35460 |
chr2.2 | exon | 11659617 | 11659766 | 11659617 | ID=MS.gene35460.t1.exon1;Parent=MS.gene35460.t1 |
chr2.2 | CDS | 11659617 | 11659766 | 11659617 | ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1 |
chr2.2 | exon | 11659239 | 11659511 | 11659239 | ID=MS.gene35460.t1.exon2;Parent=MS.gene35460.t1 |
chr2.2 | CDS | 11659239 | 11659511 | 11659239 | ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1 |
chr2.2 | exon | 11659025 | 11659131 | 11659025 | ID=MS.gene35460.t1.exon3;Parent=MS.gene35460.t1 |
chr2.2 | CDS | 11659025 | 11659131 | 11659025 | ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1 |
chr2.2 | exon | 11658527 | 11658670 | 11658527 | ID=MS.gene35460.t1.exon4;Parent=MS.gene35460.t1 |
chr2.2 | CDS | 11658527 | 11658670 | 11658527 | ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1 |
chr2.2 | exon | 11657983 | 11658429 | 11657983 | ID=MS.gene35460.t1.exon5;Parent=MS.gene35460.t1 |
chr2.2 | CDS | 11657983 | 11658429 | 11657983 | ID=cds.MS.gene35460.t1;Parent=MS.gene35460.t1 |
Gene Sequence |
Protein sequence |