Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36843.t1 | XP_013445681.1 | 97.7 | 701 | 15 | 1 | 1 | 700 | 2 | 702 | 0.00E+00 | 1366.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36843.t1 | Q05627 | 39.2 | 502 | 265 | 9 | 187 | 680 | 62 | 531 | 9.9e-92 | 339.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36843.t1 | A0A072TQM3 | 97.7 | 701 | 15 | 1 | 1 | 700 | 2 | 702 | 0.0e+00 | 1366.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene36843 | 0.83226 | 1.05E-55 | -1.69E-46 |
| MS.gene049260 | MS.gene36843 | 0.819323 | 1.23E-52 | -1.69E-46 |
| MS.gene049297 | MS.gene36843 | 0.816351 | 5.78E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene36843 | 0.800205 | 1.61E-48 | -1.69E-46 |
| MS.gene049758 | MS.gene36843 | 0.851191 | 1.04E-60 | -1.69E-46 |
| MS.gene049915 | MS.gene36843 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene36843 | 0.838114 | 3.49E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene36843 | 0.828875 | 7.05E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene36843 | 0.83506 | 2.09E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene36843 | 0.836862 | 7.30E-57 | -1.69E-46 |
| MS.gene050330 | MS.gene36843 | -0.821093 | 4.85E-53 | -1.69E-46 |
| MS.gene050438 | MS.gene36843 | 0.807348 | 5.28E-50 | -1.69E-46 |
| MS.gene050516 | MS.gene36843 | 0.817434 | 3.31E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene36843 | 0.831993 | 1.22E-55 | -1.69E-46 |
| MS.gene050623 | MS.gene36843 | -0.815334 | 9.75E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene36843 | 0.837429 | 5.22E-57 | -1.69E-46 |
| MS.gene050820 | MS.gene36843 | 0.809056 | 2.29E-50 | -1.69E-46 |
| MS.gene050987 | MS.gene36843 | 0.805531 | 1.28E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene36843 | -0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene36843 | 0.820491 | 6.67E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene36843 | 0.840254 | 9.71E-58 | -1.69E-46 |
| MS.gene051860 | MS.gene36843 | 0.822631 | 2.14E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene36843 | 0.832142 | 1.12E-55 | -1.69E-46 |
| MS.gene052176 | MS.gene36843 | 0.809815 | 1.57E-50 | -1.69E-46 |
| MS.gene052207 | MS.gene36843 | 0.821332 | 4.27E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene36843 | 0.802507 | 5.43E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene36843 | 0.804877 | 1.75E-49 | -1.69E-46 |
| MS.gene052600 | MS.gene36843 | 0.820723 | 5.90E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene36843 | 0.816331 | 5.84E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene36843 | 0.84879 | 4.90E-60 | -1.69E-46 |
| MS.gene054542 | MS.gene36843 | 0.816098 | 6.59E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene36843 | 0.843213 | 1.61E-58 | -1.69E-46 |
| MS.gene054942 | MS.gene36843 | 0.85521 | 7.35E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene36843 | 0.804428 | 2.17E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene36843 | 0.824717 | 6.94E-54 | -1.69E-46 |
| MS.gene056069 | MS.gene36843 | -0.803564 | 3.28E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene36843 | 0.835495 | 1.62E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene36843 | 0.851932 | 6.43E-61 | -1.69E-46 |
| MS.gene057260 | MS.gene36843 | 0.818633 | 1.77E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene36843 | 0.816116 | 6.53E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene36843 | 0.820069 | 8.33E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene36843 | 0.820625 | 6.22E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene36843 | 0.821407 | 4.11E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene36843 | 0.839916 | 1.19E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene36843 | 0.824402 | 8.23E-54 | -1.69E-46 |
| MS.gene058749 | MS.gene36843 | 0.807819 | 4.20E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene36843 | 0.848211 | 7.08E-60 | -1.69E-46 |
| MS.gene058845 | MS.gene36843 | 0.82348 | 1.35E-53 | -1.69E-46 |
| MS.gene058982 | MS.gene36843 | 0.813961 | 1.96E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene36843 | 0.805351 | 1.39E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene36843 | 0.831929 | 1.26E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene36843 | 0.802045 | 6.76E-49 | -1.69E-46 |
| MS.gene059899 | MS.gene36843 | 0.826102 | 3.26E-54 | -1.69E-46 |
| MS.gene060165 | MS.gene36843 | 0.805125 | 1.55E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene36843 | 0.82785 | 1.25E-54 | -1.69E-46 |
| MS.gene060480 | MS.gene36843 | 0.827763 | 1.31E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36843.t1 | MTR_8g467050 | 97.718 | 701 | 15 | 1 | 1 | 700 | 2 | 702 | 0.0 | 1411 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36843.t1 | AT4G30720 | 67.686 | 687 | 204 | 8 | 22 | 700 | 31 | 707 | 0.0 | 942 |
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCGCTGGTGTTGAGTTTC+AGG | 0.069772 | 8.4:-43816059 | MS.gene36843:intron |
| ATCATCTTTGTCAATATAAT+TGG | 0.186082 | 8.4:+43816434 | None:intergenic |
| GTTCGAGGCTGAGGAGTTTC+TGG | 0.187961 | 8.4:+43822346 | None:intergenic |
| CTCCACAGTATGCACAAATT+TGG | 0.188939 | 8.4:+43822377 | None:intergenic |
| TTTGAAGCTTTGAATTATTA+TGG | 0.197681 | 8.4:-43816085 | MS.gene36843:CDS |
| ACCAATTGAACACCACTTTC+TGG | 0.207648 | 8.4:-43824978 | MS.gene36843:CDS |
| TGCCAAGCTTCTCAAGTTTC+CGG | 0.211204 | 8.4:-43824692 | MS.gene36843:intron |
| TGACTGGTTGCGTCGGTAAA+TGG | 0.235330 | 8.4:+43824945 | None:intergenic |
| CAGGCAACATCTGCAAGATT+TGG | 0.268819 | 8.4:-43820515 | MS.gene36843:CDS |
| GGAGATGTTAAAACTGTTCT+TGG | 0.272691 | 8.4:-43814896 | MS.gene36843:CDS |
| TATGAAAGCACTTCGGTAAA+AGG | 0.277837 | 8.4:-43815028 | MS.gene36843:CDS |
| AAAGCTTCAATTATGTTTGC+AGG | 0.286428 | 8.4:+43815492 | None:intergenic |
| GTGAATGACGGAGGAGATTT+TGG | 0.303304 | 8.4:-43822267 | MS.gene36843:CDS |
| TGACGGGTACCGTTGTTTAC+CGG | 0.303374 | 8.4:+43824879 | None:intergenic |
| GGCAGGGTGGTGCAGGTACC+TGG | 0.306928 | 8.4:-43821460 | MS.gene36843:intron |
| GATTTAGTGAAAGGGGAAAA+TGG | 0.307534 | 8.4:-43822204 | MS.gene36843:CDS |
| TAAACTCACAGCAAAATCTT+TGG | 0.309502 | 8.4:+43820159 | None:intergenic |
| TTGCAGGTAACTATAAAGTT+TGG | 0.309823 | 8.4:-43820364 | MS.gene36843:intron |
| TCAGCCTCGAACCTCGTTCT+TGG | 0.309865 | 8.4:-43822335 | MS.gene36843:CDS |
| TTCCATTACTTCGCAACTTC+AGG | 0.331180 | 8.4:-43820534 | MS.gene36843:CDS |
| TAGAAAGTAACTTCTGCTTT+GGG | 0.335010 | 8.4:-43821975 | MS.gene36843:CDS |
| TGGACACGTTCTTGGGGTTA+TGG | 0.342704 | 8.4:-43820311 | MS.gene36843:CDS |
| TAGAAGATGGACACGTTCTT+GGG | 0.347954 | 8.4:-43820318 | MS.gene36843:CDS |
| CGAGAACAAGCGCAGCAAAT+AGG | 0.349036 | 8.4:+43822097 | None:intergenic |
| GGAAAGTTGGTAACTAGAAT+TGG | 0.357096 | 8.4:-43821431 | MS.gene36843:CDS |
| TTAGAAAGTAACTTCTGCTT+TGG | 0.357682 | 8.4:-43821976 | MS.gene36843:CDS |
| ATTGTGGGTAGTGGGCCTTC+TGG | 0.360967 | 8.4:-43822120 | MS.gene36843:CDS |
| ATGAGAACTTTAGTGCAGTT+TGG | 0.362343 | 8.4:-43820613 | MS.gene36843:CDS |
| GGAATGTGATGCAGTTATTC+TGG | 0.362868 | 8.4:-43820245 | MS.gene36843:CDS |
| GCGCTTGTTCTCGCAGAGCT+TGG | 0.368495 | 8.4:-43822087 | MS.gene36843:CDS |
| TCCACAGTATGCACAAATTT+GGG | 0.372547 | 8.4:+43822378 | None:intergenic |
| AGTCAATATCGCGAGGAATC+TGG | 0.375723 | 8.4:+43815053 | None:intergenic |
| ATAGAAGATGGACACGTTCT+TGG | 0.376202 | 8.4:-43820319 | MS.gene36843:CDS |
| ACCAGAAAGTGGTGTTCAAT+TGG | 0.383301 | 8.4:+43824977 | None:intergenic |
| AGGCAACATCTGCAAGATTT+GGG | 0.391097 | 8.4:-43820514 | MS.gene36843:CDS |
| CAGCCTCGAACCTCGTTCTT+GGG | 0.409703 | 8.4:-43822334 | MS.gene36843:CDS |
| TGCAATGAGGCTCTCCTTCA+CGG | 0.413120 | 8.4:-43815301 | MS.gene36843:CDS |
| AACTTATTCTCAAGAAAGTC+TGG | 0.420379 | 8.4:+43815673 | None:intergenic |
| TCCACCGTCAAGTTATCGCT+TGG | 0.431046 | 8.4:-43815547 | MS.gene36843:CDS |
| AGGAATCTGGATCGGGGAAC+TGG | 0.434043 | 8.4:+43815066 | None:intergenic |
| TTGCATGTGTCCAGGTGGGC+AGG | 0.435401 | 8.4:-43816361 | MS.gene36843:intron |
| CAATGAATCAACTGCTTCAA+AGG | 0.437703 | 8.4:-43816409 | MS.gene36843:CDS |
| GCGGTAGATGGAATGCATGC+TGG | 0.438169 | 8.4:-43814953 | MS.gene36843:CDS |
| TAACCTGCTCCTTCACCAAC+TGG | 0.443657 | 8.4:+43814998 | None:intergenic |
| AAATGTGTAGTATTCTGAAC+TGG | 0.446623 | 8.4:-43816511 | MS.gene36843:intron |
| AAACTCACAGCAAAATCTTT+GGG | 0.447590 | 8.4:+43820160 | None:intergenic |
| AATTATTATGGTCCCCTCGC+TGG | 0.447609 | 8.4:-43816073 | MS.gene36843:CDS |
| AAGTCTGGAACTGTCTGAAC+AGG | 0.451101 | 8.4:+43815688 | None:intergenic |
| GAAAATAAAGATTTAGTGAA+AGG | 0.453455 | 8.4:-43822213 | MS.gene36843:CDS |
| GCAACTTTGTAATCTGCCAC+TGG | 0.455000 | 8.4:+43816456 | None:intergenic |
| AAAATAAAGATTTAGTGAAA+GGG | 0.457307 | 8.4:-43822212 | MS.gene36843:CDS |
| ATTGTTAGTGCCGCGGTAGA+TGG | 0.457652 | 8.4:-43814965 | MS.gene36843:CDS |
| TCTTACTCACAATGTGGAAC+TGG | 0.459256 | 8.4:-43820185 | MS.gene36843:CDS |
| TTAGAAAATCGTTTGATGCT+AGG | 0.462105 | 8.4:-43824545 | MS.gene36843:CDS |
| GACTGGTTGCGTCGGTAAAT+GGG | 0.470268 | 8.4:+43824946 | None:intergenic |
| ACAAAACAGATATTGATTGA+TGG | 0.471279 | 8.4:-43820586 | MS.gene36843:CDS |
| CCATCTGAAATATGCATCAA+TGG | 0.476713 | 8.4:-43816178 | MS.gene36843:CDS |
| TATCGCGAGGAATCTGGATC+GGG | 0.483356 | 8.4:+43815059 | None:intergenic |
| CCACCGTCAAGTTATCGCTT+GGG | 0.486815 | 8.4:-43815546 | MS.gene36843:CDS |
| AAAATTGCAATTGTGGGTAG+TGG | 0.487119 | 8.4:-43822129 | MS.gene36843:CDS |
| TATGTGTGGCAGGGTGGTGC+AGG | 0.492156 | 8.4:-43821467 | MS.gene36843:intron |
| AAGAACGAGGTTCGAGGCTG+AGG | 0.492175 | 8.4:+43822337 | None:intergenic |
| TTTCTTGAGAATAAGTTGTC+CGG | 0.492824 | 8.4:-43815667 | MS.gene36843:intron |
| ACTAGAATTGGACGCAATAG+TGG | 0.492854 | 8.4:-43821419 | MS.gene36843:CDS |
| AATAAGAGCAACAAATTTGA+GGG | 0.493812 | 8.4:-43824805 | MS.gene36843:CDS |
| GGAGCTAATAAACAGAATAC+AGG | 0.494396 | 8.4:-43817237 | MS.gene36843:intron |
| TACCGGAAACTTGAGAAGCT+TGG | 0.498821 | 8.4:+43824690 | None:intergenic |
| CGGTAGATGGAATGCATGCT+GGG | 0.499555 | 8.4:-43814952 | MS.gene36843:CDS |
| AGAGCTGCTGTGATGGGAGG+AGG | 0.502676 | 8.4:-43815724 | MS.gene36843:CDS |
| ACTTCTAGAAAGTCTTTACC+AGG | 0.503145 | 8.4:+43824739 | None:intergenic |
| TCTTGTAGTACGGCGAATCT+TGG | 0.503738 | 8.4:-43822001 | MS.gene36843:CDS |
| GATGATCTAGAGATAGAAGA+TGG | 0.505236 | 8.4:-43820331 | MS.gene36843:CDS |
| CGTTCCACAAGGCCAACTTT+AGG | 0.506682 | 8.4:+43822291 | None:intergenic |
| TACCAACTTTCCATCACTCC+AGG | 0.513184 | 8.4:+43821442 | None:intergenic |
| TAATAAGAGCAACAAATTTG+AGG | 0.514401 | 8.4:-43824806 | MS.gene36843:CDS |
| CCATTGATGCATATTTCAGA+TGG | 0.515848 | 8.4:+43816178 | None:intergenic |
| GGAACGCTTACCTGCCCACC+TGG | 0.515975 | 8.4:+43816351 | None:intergenic |
| TGATGCAGTTATTCTGGCGG+TGG | 0.517240 | 8.4:-43820239 | MS.gene36843:CDS |
| ATTGATGGTAAGCCTCACTT+AGG | 0.517498 | 8.4:-43820571 | MS.gene36843:CDS |
| GCAACAAATTTGAGGGTACA+TGG | 0.520573 | 8.4:-43824798 | MS.gene36843:CDS |
| TATCCAGTTGGTGAAGGAGC+AGG | 0.520982 | 8.4:-43815001 | MS.gene36843:CDS |
| TACCTGGAGTGATGGAAAGT+TGG | 0.526997 | 8.4:-43821444 | MS.gene36843:CDS |
| GTTCAATTGGTTTGAACAAG+AGG | 0.528658 | 8.4:+43824990 | None:intergenic |
| CTTGGCAAGGCTCATAATGC+TGG | 0.529433 | 8.4:-43814878 | MS.gene36843:CDS |
| GCGTTTAAGAAGTCAGAAGT+TGG | 0.530471 | 8.4:-43820266 | MS.gene36843:CDS |
| AAATGTGCGAACAAGAGAAC+CGG | 0.532191 | 8.4:-43824898 | MS.gene36843:CDS |
| TCTGAAGTTTGCCGTGGACG+TGG | 0.540680 | 8.4:-43816486 | MS.gene36843:CDS |
| TCTCAGCTGCAGCCTAAAGT+TGG | 0.541995 | 8.4:-43822303 | MS.gene36843:CDS |
| ACACCCAAGCGATAACTTGA+CGG | 0.547468 | 8.4:+43815543 | None:intergenic |
| AAATTGCAATTGTGGGTAGT+GGG | 0.555402 | 8.4:-43822128 | MS.gene36843:CDS |
| GGTGCAGGTACCTGGAGTGA+TGG | 0.557661 | 8.4:-43821452 | MS.gene36843:CDS |
| ATTGTAAACAGGTAGGGTTA+CGG | 0.558858 | 8.4:-43817274 | MS.gene36843:intron |
| AAATAAAGATTTAGTGAAAG+GGG | 0.559516 | 8.4:-43822211 | MS.gene36843:CDS |
| GTGGGCAAACGCTGCACTTG+TGG | 0.560981 | 8.4:-43816128 | MS.gene36843:CDS |
| GTTACGGATTGAGCATCCTC+AGG | 0.564257 | 8.4:-43817258 | MS.gene36843:CDS |
| ATTCTGTTTATTAGCTCCTG+AGG | 0.565629 | 8.4:+43817242 | None:intergenic |
| AGCGCAGCAAATAGGCCAGA+AGG | 0.567309 | 8.4:+43822105 | None:intergenic |
| GAGGTCAACCAGTTGAAAAG+AGG | 0.567729 | 8.4:-43822041 | MS.gene36843:CDS |
| TTACCAGGGTCTTGATCAAG+TGG | 0.567926 | 8.4:+43824754 | None:intergenic |
| CAACTTTGTAATCTGCCACT+GGG | 0.568984 | 8.4:+43816457 | None:intergenic |
| AAAATCGTTTGATGCTAGGA+AGG | 0.569037 | 8.4:-43824541 | MS.gene36843:intron |
| AGGTCAACCAGTTGAAAAGA+GGG | 0.570945 | 8.4:-43822040 | MS.gene36843:CDS |
| ATTTGTGCATACTGTGGAGA+TGG | 0.573470 | 8.4:-43822373 | MS.gene36843:CDS |
| GGACTATATCCAGTTGGTGA+AGG | 0.574220 | 8.4:-43815007 | MS.gene36843:CDS |
| TGTTACTGTTGCAATGTGAC+TGG | 0.576615 | 8.4:+43824929 | None:intergenic |
| GAACGAAGAGCTGCTGTGAT+GGG | 0.578215 | 8.4:-43815730 | MS.gene36843:CDS |
| TGTTAAAACTGTTCTTGGCA+AGG | 0.579342 | 8.4:-43814891 | MS.gene36843:CDS |
| ATATTGGTGCTCTTGTAGTA+CGG | 0.579586 | 8.4:-43822011 | MS.gene36843:CDS |
| TCACTTAGGAACAGATAGGT+TGG | 0.580925 | 8.4:-43820557 | MS.gene36843:CDS |
| TGAACGAAGAGCTGCTGTGA+TGG | 0.581949 | 8.4:-43815731 | MS.gene36843:CDS |
| AGTCCCAAGAACGAGGTTCG+AGG | 0.582332 | 8.4:+43822331 | None:intergenic |
| GATGTCACGCTAATAGAAAG+AGG | 0.582989 | 8.4:-43822060 | MS.gene36843:CDS |
| CTGAAACTCAACACCAGCGA+GGG | 0.583478 | 8.4:+43816060 | None:intergenic |
| TTCTCGGCGAGCATCTAAGT+GGG | 0.586989 | 8.4:-43816146 | MS.gene36843:CDS |
| ATATCGCGAGGAATCTGGAT+CGG | 0.589865 | 8.4:+43815058 | None:intergenic |
| TGCCTGAAGTTGCGAAGTAA+TGG | 0.590534 | 8.4:+43820532 | None:intergenic |
| TGAATCAACTGCTTCAAAGG+TGG | 0.591068 | 8.4:-43816406 | MS.gene36843:CDS |
| GGGAGTTGAAAACCAGAAAG+TGG | 0.592940 | 8.4:+43824966 | None:intergenic |
| TTCACTTGAAACGTTTGACA+AGG | 0.594840 | 8.4:-43815463 | MS.gene36843:CDS |
| TTTCTCGGCGAGCATCTAAG+TGG | 0.595370 | 8.4:-43816147 | MS.gene36843:CDS |
| GGCTCTCCTTCACGGTGTAG+AGG | 0.595594 | 8.4:-43815293 | MS.gene36843:intron |
| AGCCTCACTTAGGAACAGAT+AGG | 0.599184 | 8.4:-43820561 | MS.gene36843:CDS |
| CTGGGACTTTACCACGTCCA+CGG | 0.599777 | 8.4:+43816475 | None:intergenic |
| AAGTAACTTCTGCTTTGGGG+AGG | 0.601436 | 8.4:-43821971 | MS.gene36843:intron |
| TAATTACCTCTACACCGTGA+AGG | 0.606203 | 8.4:+43815287 | None:intergenic |
| TTCAATTGGTTTGAACAAGA+GGG | 0.607566 | 8.4:+43824991 | None:intergenic |
| GGTGAAGGAGCAGGTTACGC+TGG | 0.611256 | 8.4:-43814992 | MS.gene36843:CDS |
| GCCTCATTGCAGATAAACCC+TGG | 0.620137 | 8.4:+43815313 | None:intergenic |
| AGAAAGTAACTTCTGCTTTG+GGG | 0.620671 | 8.4:-43821974 | MS.gene36843:CDS |
| AACCTATCTGTTCCTAAGTG+AGG | 0.621205 | 8.4:+43820559 | None:intergenic |
| GAAGGAGCAGGTTACGCTGG+TGG | 0.621448 | 8.4:-43814989 | MS.gene36843:CDS |
| ACTACTGAAAACGGTTCTCG+TGG | 0.627381 | 8.4:+43824567 | None:intergenic |
| TGCAATGTGACTGGTTGCGT+CGG | 0.629655 | 8.4:+43824938 | None:intergenic |
| GTCAACCAGTTGAAAAGAGG+GGG | 0.629710 | 8.4:-43822038 | MS.gene36843:CDS |
| ACCAGGGTTTATCTGCAATG+AGG | 0.631823 | 8.4:-43815314 | MS.gene36843:CDS |
| AGAAGATGGACACGTTCTTG+GGG | 0.632121 | 8.4:-43820317 | MS.gene36843:CDS |
| CGTCATTCACACGTTCCACA+AGG | 0.633610 | 8.4:+43822280 | None:intergenic |
| GTAAAAGGACTATATCCAGT+TGG | 0.634288 | 8.4:-43815013 | MS.gene36843:CDS |
| ACTTGAAACGTTTGACAAGG+AGG | 0.634724 | 8.4:-43815460 | MS.gene36843:intron |
| GCCCAAATTTGTGCATACTG+TGG | 0.640293 | 8.4:-43822379 | MS.gene36843:CDS |
| GCAGCCTAAAGTTGGCCTTG+TGG | 0.640582 | 8.4:-43822295 | MS.gene36843:CDS |
| TCTTAAACGCAATTCATCAG+CGG | 0.642026 | 8.4:+43820279 | None:intergenic |
| TGACTCTTATGAAAGCACTT+CGG | 0.643945 | 8.4:-43815035 | MS.gene36843:CDS |
| GTTCCACTTGATCAAGACCC+TGG | 0.646620 | 8.4:-43824757 | MS.gene36843:CDS |
| CTTGATCAAGTGGAACAGCA+AGG | 0.650695 | 8.4:+43824764 | None:intergenic |
| CTTGTGGAACGTGTGAATGA+CGG | 0.650828 | 8.4:-43822279 | MS.gene36843:CDS |
| CAATAGTGGCAGTGTCATTG+CGG | 0.656977 | 8.4:-43821405 | MS.gene36843:intron |
| CGAAGAGCTGCTGTGATGGG+AGG | 0.657306 | 8.4:-43815727 | MS.gene36843:CDS |
| AATGCTTCTTACTCACAATG+TGG | 0.660506 | 8.4:-43820191 | MS.gene36843:CDS |
| ACAAGAGGGAAGAAGAAGCA+TGG | 0.662978 | 8.4:+43825005 | None:intergenic |
| CTGGCATCTGAAGTTTGCCG+TGG | 0.673387 | 8.4:-43816492 | MS.gene36843:CDS |
| TCATAAGAGTCAATATCGCG+AGG | 0.674809 | 8.4:+43815046 | None:intergenic |
| GATATAAAGTCCCAAGAACG+AGG | 0.679869 | 8.4:+43822324 | None:intergenic |
| TGAAACTCAACACCAGCGAG+GGG | 0.682670 | 8.4:+43816061 | None:intergenic |
| GATGCAGTTATTCTGGCGGT+GGG | 0.684624 | 8.4:-43820238 | MS.gene36843:CDS |
| CCCAAGCGATAACTTGACGG+TGG | 0.685569 | 8.4:+43815546 | None:intergenic |
| ATCGCGAGGAATCTGGATCG+GGG | 0.688661 | 8.4:+43815060 | None:intergenic |
| GGTCAACCAGTTGAAAAGAG+GGG | 0.689399 | 8.4:-43822039 | MS.gene36843:CDS |
| CCTGAAACTCAACACCAGCG+AGG | 0.694281 | 8.4:+43816059 | None:intergenic |
| TGGTGGTATTGTTAGTGCCG+CGG | 0.695596 | 8.4:-43814972 | MS.gene36843:CDS |
| CTTCTAGAAAGTCTTTACCA+GGG | 0.696274 | 8.4:+43824740 | None:intergenic |
| ATGTGATGCAGTTATTCTGG+CGG | 0.698029 | 8.4:-43820242 | MS.gene36843:CDS |
| AGCATGCATTCCATCTACCG+CGG | 0.698826 | 8.4:+43814955 | None:intergenic |
| ACAAGAGAACCGGTAAACAA+CGG | 0.704909 | 8.4:-43824888 | MS.gene36843:CDS |
| TGGACGTGGTAAAGTCCCAG+TGG | 0.712076 | 8.4:-43816472 | MS.gene36843:CDS |
| GTGGAACGTGTGAATGACGG+AGG | 0.763932 | 8.4:-43822276 | MS.gene36843:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 43814862 | 43825025 | 43814862 | ID=MS.gene36843 |
| chr8.4 | mRNA | 43814862 | 43825025 | 43814862 | ID=MS.gene36843.t1;Parent=MS.gene36843 |
| chr8.4 | exon | 43824693 | 43825025 | 43824693 | ID=MS.gene36843.t1.exon1;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43824693 | 43825025 | 43824693 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43824542 | 43824604 | 43824542 | ID=MS.gene36843.t1.exon2;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43824542 | 43824604 | 43824542 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43821972 | 43822403 | 43821972 | ID=MS.gene36843.t1.exon3;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43821972 | 43822403 | 43821972 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43821406 | 43821477 | 43821406 | ID=MS.gene36843.t1.exon4;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43821406 | 43821477 | 43821406 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43820513 | 43820638 | 43820513 | ID=MS.gene36843.t1.exon5;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43820513 | 43820638 | 43820513 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43820168 | 43820380 | 43820168 | ID=MS.gene36843.t1.exon6;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43820168 | 43820380 | 43820168 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43817238 | 43817285 | 43817238 | ID=MS.gene36843.t1.exon7;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43817238 | 43817285 | 43817238 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43816362 | 43816523 | 43816362 | ID=MS.gene36843.t1.exon8;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43816362 | 43816523 | 43816362 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43816060 | 43816221 | 43816060 | ID=MS.gene36843.t1.exon9;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43816060 | 43816221 | 43816060 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43815668 | 43815761 | 43815668 | ID=MS.gene36843.t1.exon10;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43815668 | 43815761 | 43815668 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43815461 | 43815579 | 43815461 | ID=MS.gene36843.t1.exon11;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43815461 | 43815579 | 43815461 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43815294 | 43815338 | 43815294 | ID=MS.gene36843.t1.exon12;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43815294 | 43815338 | 43815294 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| chr8.4 | exon | 43814862 | 43815095 | 43814862 | ID=MS.gene36843.t1.exon13;Parent=MS.gene36843.t1 |
| chr8.4 | CDS | 43814862 | 43815095 | 43814862 | ID=cds.MS.gene36843.t1;Parent=MS.gene36843.t1 |
| Gene Sequence |
| Protein sequence |
