Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39069.t1 | XP_003625106.2 | 67.9 | 502 | 55 | 4 | 5 | 449 | 225 | 677 | 3.60E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39069.t1 | Q6ZQF0 | 26.4 | 201 | 114 | 7 | 2 | 174 | 235 | 429 | 2.5e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39069.t1 | A0A072U1M9 | 67.9 | 502 | 55 | 4 | 5 | 449 | 42 | 494 | 2.6e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene39069 | 0.808042 | 3.76E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene39069 | 0.809764 | 1.61E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene39069 | 0.814072 | 1.86E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene39069 | 0.808129 | 3.61E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene39069 | 0.834463 | 2.95E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene39069 | 0.835624 | 1.51E-56 | -1.69E-46 |
| MS.gene050558 | MS.gene39069 | 0.800716 | 1.26E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene39069 | 0.805945 | 1.04E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene39069 | 0.802741 | 4.86E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene39069 | 0.81341 | 2.60E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene39069 | 0.844358 | 7.94E-59 | -1.69E-46 |
| MS.gene051207 | MS.gene39069 | 0.803994 | 2.67E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene39069 | 0.807394 | 5.17E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene39069 | 0.839248 | 1.78E-57 | -1.69E-46 |
| MS.gene052190 | MS.gene39069 | 0.834557 | 2.80E-56 | -1.69E-46 |
| MS.gene052333 | MS.gene39069 | 0.83761 | 4.70E-57 | -1.69E-46 |
| MS.gene052358 | MS.gene39069 | -0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene39069 | 0.815819 | 7.60E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene39069 | 0.804865 | 1.76E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene39069 | -0.818245 | 2.17E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene39069 | 0.829406 | 5.24E-55 | -1.69E-46 |
| MS.gene054559 | MS.gene39069 | 0.808681 | 2.75E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene39069 | 0.80564 | 1.21E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene39069 | 0.805936 | 1.05E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene39069 | 0.819391 | 1.19E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene39069 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene055367 | MS.gene39069 | 0.816377 | 5.71E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene39069 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene39069 | 0.809198 | 2.13E-50 | -1.69E-46 |
| MS.gene060553 | MS.gene39069 | 0.816317 | 5.89E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene39069 | 0.801195 | 1.01E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene39069 | -0.892745 | 1.20E-74 | -1.69E-46 |
| MS.gene061114 | MS.gene39069 | -0.831567 | 1.55E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39069.t1 | MTR_7g090980 | 68.924 | 502 | 50 | 5 | 5 | 449 | 42 | 494 | 0.0 | 644 |
| MS.gene39069.t1 | MTR_7g090980 | 68.924 | 502 | 50 | 5 | 5 | 449 | 225 | 677 | 0.0 | 641 |
| MS.gene39069.t1 | MTR_7g091020 | 74.747 | 297 | 32 | 3 | 115 | 411 | 1 | 254 | 5.11e-140 | 401 |
| MS.gene39069.t1 | MTR_1g029630 | 56.400 | 250 | 50 | 3 | 5 | 196 | 223 | 471 | 1.80e-78 | 263 |
| MS.gene39069.t1 | MTR_1g029630 | 56.904 | 239 | 44 | 3 | 16 | 196 | 224 | 461 | 1.26e-75 | 256 |
| MS.gene39069.t1 | MTR_7g091010 | 72.727 | 77 | 17 | 1 | 1 | 77 | 32 | 104 | 1.45e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39069.t1 | AT1G77320 | 41.564 | 243 | 92 | 6 | 12 | 205 | 229 | 470 | 4.85e-46 | 171 |
| MS.gene39069.t1 | AT1G77320 | 41.564 | 243 | 92 | 6 | 12 | 205 | 229 | 470 | 6.69e-46 | 171 |
| MS.gene39069.t1 | AT1G77320 | 41.004 | 239 | 91 | 6 | 16 | 205 | 216 | 453 | 4.30e-44 | 166 |
Find 89 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATAAGATGGCAAAATTT+TGG | 0.147690 | 7.4:-17760329 | MS.gene39069:CDS |
| GCAAAGTTAGGTCCTCTTTA+TGG | 0.208714 | 7.4:-17758795 | MS.gene39069:CDS |
| TGAGGAGGATTGTAAGTCTA+AGG | 0.252399 | 7.4:-17758724 | MS.gene39069:CDS |
| CTCTGTGCCCTCTTTGAATA+TGG | 0.262226 | 7.4:+17758456 | None:intergenic |
| TCATTGTCACAATATTAATA+TGG | 0.268431 | 7.4:+17760304 | None:intergenic |
| AAGTTGACACACATAGTAAT+TGG | 0.269104 | 7.4:-17759771 | MS.gene39069:CDS |
| TCAATGAATTGAACTTTAAT+CGG | 0.282887 | 7.4:-17759944 | MS.gene39069:CDS |
| TCTGCCTCTTTAACAAATAA+TGG | 0.287870 | 7.4:+17759993 | None:intergenic |
| TTGTGCACCTCCTGTTCTTC+GGG | 0.326864 | 7.4:+17758420 | None:intergenic |
| GATGAATCTATTGCTCAAAT+AGG | 0.328925 | 7.4:-17760273 | MS.gene39069:intron |
| GTTGTGCACCTCCTGTTCTT+CGG | 0.334764 | 7.4:+17758419 | None:intergenic |
| TTCATCAGATTCAGAATCAT+TGG | 0.337510 | 7.4:+17759914 | None:intergenic |
| ATTAAAGTTCAATTCATTGA+TGG | 0.347109 | 7.4:+17759947 | None:intergenic |
| AATGGAGAAGCTAATTAATA+TGG | 0.365938 | 7.4:-17759835 | MS.gene39069:CDS |
| GATAAAGATCCACTCTGAAC+AGG | 0.374142 | 7.4:+17760026 | None:intergenic |
| GACGACTTGAGTGCAAATTT+AGG | 0.395237 | 7.4:-17758921 | MS.gene39069:CDS |
| CAATCTCAAAGCGAGGCTTT+TGG | 0.395682 | 7.4:+17758883 | None:intergenic |
| ATCTTATGCTTATCACCTTC+AGG | 0.403746 | 7.4:+17760342 | None:intergenic |
| TTAATATTGTGACAATGAAA+TGG | 0.413497 | 7.4:-17760299 | MS.gene39069:CDS |
| TATCATTTAAAGACAAGCAT+TGG | 0.418259 | 7.4:+17759793 | None:intergenic |
| GATTGCAGAATATCACTTGT+TGG | 0.423098 | 7.4:-17759873 | MS.gene39069:CDS |
| AAGAAAGCAATGGAGGCGTT+TGG | 0.428535 | 7.4:-17758663 | MS.gene39069:CDS |
| TGTTCCATTATTTGTTAAAG+AGG | 0.429941 | 7.4:-17759997 | MS.gene39069:CDS |
| AAAGAAGAATCTAGAAAAGA+AGG | 0.430989 | 7.4:-17759090 | MS.gene39069:CDS |
| ATCATTTAAAGACAAGCATT+GGG | 0.437953 | 7.4:+17759794 | None:intergenic |
| AAGAACAGGAGGTGCACAAC+AGG | 0.452673 | 7.4:-17758416 | MS.gene39069:CDS |
| GTGAGAACTGTTATTTCTCT+AGG | 0.458019 | 7.4:-17759493 | MS.gene39069:CDS |
| TAATAATCAACCCGAAGAAC+AGG | 0.463443 | 7.4:-17758430 | MS.gene39069:CDS |
| CAATGAATTGAACTTTAATC+GGG | 0.464809 | 7.4:-17759943 | MS.gene39069:CDS |
| TGAGGCTTATAAGCTTTATG+AGG | 0.472144 | 7.4:-17758742 | MS.gene39069:CDS |
| AATTCATTGATGGTCTGTAA+TGG | 0.472352 | 7.4:+17759957 | None:intergenic |
| GAAGACTTGAGGGCAAAGTT+AGG | 0.480088 | 7.4:-17758807 | MS.gene39069:CDS |
| GCGCGTTTGCTTCGAGATTG+CGG | 0.499064 | 7.4:-17758994 | MS.gene39069:CDS |
| ATCTCTAAGTATCGTGAGAT+GGG | 0.507902 | 7.4:-17758690 | MS.gene39069:CDS |
| AGTTGACACACATAGTAATT+GGG | 0.508048 | 7.4:-17759770 | MS.gene39069:CDS |
| ATTATGTTGTTAAAACCTCA+TGG | 0.512672 | 7.4:-17759465 | MS.gene39069:CDS |
| ATTAATATGGTGCGTAAAGG+TGG | 0.513524 | 7.4:-17759822 | MS.gene39069:CDS |
| AAACATTGAGAACCACTTCA+AGG | 0.518932 | 7.4:-17758574 | MS.gene39069:CDS |
| GGCTTATAAGCTTTATGAGG+AGG | 0.520574 | 7.4:-17758739 | MS.gene39069:CDS |
| GGAATTAAAGAGACGACAAA+AGG | 0.520847 | 7.4:-17758859 | MS.gene39069:CDS |
| GGAATTAAAGAGACGACAAA+AGG | 0.520847 | 7.4:-17758973 | MS.gene39069:CDS |
| AAGAATCGACGAAGACTTGA+GGG | 0.521706 | 7.4:-17758817 | MS.gene39069:CDS |
| TTCTGCAATCTGCTAAATAC+CGG | 0.522822 | 7.4:+17759886 | None:intergenic |
| CTAATTAATATGGTGCGTAA+AGG | 0.529112 | 7.4:-17759825 | MS.gene39069:CDS |
| AAAGCCTCGCTTTGAGATTG+CGG | 0.530371 | 7.4:-17758880 | MS.gene39069:CDS |
| AACATTGAGAACCACTTCAA+GGG | 0.533499 | 7.4:-17758573 | MS.gene39069:CDS |
| GACTGTTCTTACGCTCCTGA+AGG | 0.535304 | 7.4:-17760357 | MS.gene39069:CDS |
| CATCTCTAAGTATCGTGAGA+TGG | 0.537311 | 7.4:-17758691 | MS.gene39069:CDS |
| TCAAAATCATCCCCTTGAAG+TGG | 0.537507 | 7.4:+17758562 | None:intergenic |
| GTGTTTCTACAGGGAAAGGA+AGG | 0.547035 | 7.4:-17759521 | MS.gene39069:intron |
| TGTTAAAACCTCATGGCTTG+AGG | 0.558728 | 7.4:-17759458 | MS.gene39069:CDS |
| AGGTCAGAAAACGTTGGTGG+AGG | 0.560767 | 7.4:-17759129 | MS.gene39069:CDS |
| TTGATTATGCTGCTTCTCGT+AGG | 0.565113 | 7.4:-17759028 | MS.gene39069:CDS |
| CTGAATCTGATGAAAATGAC+CGG | 0.568259 | 7.4:-17759905 | MS.gene39069:CDS |
| CGTTGGTGGAGGCATCCACT+AGG | 0.568742 | 7.4:-17759118 | MS.gene39069:CDS |
| GCATTGTACCGTCGTAGAAG+AGG | 0.573523 | 7.4:+17759409 | None:intergenic |
| TGAAGGTGATAAGCATAAGA+TGG | 0.576251 | 7.4:-17760340 | MS.gene39069:CDS |
| ATTGAACTTTAATCGGGCTG+TGG | 0.578792 | 7.4:-17759937 | MS.gene39069:CDS |
| TAAGAATCGACGAAGACTTG+AGG | 0.580620 | 7.4:-17758818 | MS.gene39069:CDS |
| GAGGAGGATTGTAAGTCTAA+GGG | 0.581483 | 7.4:-17758723 | MS.gene39069:CDS |
| AATATGGTGCGTAAAGGTGG+AGG | 0.581922 | 7.4:-17759819 | MS.gene39069:CDS |
| TTCAGGTCAGAAAACGTTGG+TGG | 0.586996 | 7.4:-17759132 | MS.gene39069:intron |
| AAAGAGACGACAAAAGGAGA+TGG | 0.591489 | 7.4:-17758853 | MS.gene39069:CDS |
| AAAGAGACGACAAAAGGAGA+TGG | 0.591489 | 7.4:-17758967 | MS.gene39069:CDS |
| ATGGATAGCATGTCTGAATG+AGG | 0.595727 | 7.4:-17760057 | MS.gene39069:intron |
| GATGGGATTTAAGAAAGCAA+TGG | 0.597493 | 7.4:-17758673 | MS.gene39069:CDS |
| TGTTGACTTAGCACAAGTGC+TGG | 0.601901 | 7.4:-17759051 | MS.gene39069:CDS |
| AGCAAGTCCCTCTTCTACGA+CGG | 0.602210 | 7.4:-17759417 | MS.gene39069:CDS |
| TGTGCCCTCTTTGAATATGG+AGG | 0.602441 | 7.4:+17758459 | None:intergenic |
| CATTGTACCGTCGTAGAAGA+GGG | 0.602791 | 7.4:+17759410 | None:intergenic |
| GCAAATTTAGGTCCTCGTGA+TGG | 0.603856 | 7.4:-17758909 | MS.gene39069:CDS |
| ACGACAAAAGGAGATGGAGA+TGG | 0.607708 | 7.4:-17758961 | MS.gene39069:CDS |
| TCAGGATCAGTCTTATCACC+AGG | 0.611037 | 7.4:+17758534 | None:intergenic |
| ATGAGCCTCCATATTCAAAG+AGG | 0.613128 | 7.4:-17758464 | MS.gene39069:CDS |
| GAATAGACTTACGTATATGT+CGG | 0.615228 | 7.4:+17759744 | None:intergenic |
| AGATCCACTCTGAACAGGGT+AGG | 0.621048 | 7.4:+17760031 | None:intergenic |
| ATAAAGATCCACTCTGAACA+GGG | 0.625634 | 7.4:+17760027 | None:intergenic |
| AATTCCGCAATCTCAAAGCG+AGG | 0.630571 | 7.4:+17758876 | None:intergenic |
| ACATTGAGAACCACTTCAAG+GGG | 0.633314 | 7.4:-17758572 | MS.gene39069:CDS |
| GGGATTTAAGAAAGCAATGG+AGG | 0.645850 | 7.4:-17758670 | MS.gene39069:CDS |
| TAATCAACCCGAAGAACAGG+AGG | 0.646036 | 7.4:-17758427 | MS.gene39069:CDS |
| CATCTCACGATACTTAGAGA+TGG | 0.647887 | 7.4:+17758692 | None:intergenic |
| ACGACAAAAGGAGATGGAGA+CGG | 0.663557 | 7.4:-17758847 | MS.gene39069:CDS |
| TGAGCCTCCATATTCAAAGA+GGG | 0.666941 | 7.4:-17758463 | MS.gene39069:CDS |
| GAATCCTACCCTGTTCAGAG+TGG | 0.669776 | 7.4:-17760035 | MS.gene39069:CDS |
| TCATTGATGGTCTGTAATGG+AGG | 0.675161 | 7.4:+17759960 | None:intergenic |
| ATCACAATCCTCAAGCCATG+AGG | 0.703903 | 7.4:+17759450 | None:intergenic |
| TGGTTCAGGTCAGAAAACGT+TGG | 0.715570 | 7.4:-17759135 | MS.gene39069:intron |
| TATTCAAAGAGGGCACAGAG+TGG | 0.749556 | 7.4:-17758453 | MS.gene39069:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTAAGAATAAATTTAA+TGG | - | chr7.4:17759044-17759063 | MS.gene39069:CDS | 10.0% |
| !!! | TTATTTTTCGTATTTTTATA+TGG | - | chr7.4:17758688-17758707 | MS.gene39069:CDS | 10.0% |
| !!! | TTTTTTAAGTTTTTAAATTC+AGG | - | chr7.4:17759517-17759536 | MS.gene39069:intron | 10.0% |
| !! | ATTAAAGTTCAATTCATTGA+TGG | + | chr7.4:17758820-17758839 | None:intergenic | 20.0% |
| !! | TAAAAATGAGTTAAAGATTG+AGG | - | chr7.4:17760004-17760023 | MS.gene39069:CDS | 20.0% |
| !! | TCAATGAATTGAACTTTAAT+CGG | - | chr7.4:17758820-17758839 | MS.gene39069:CDS | 20.0% |
| !! | TCATTGTCACAATATTAATA+TGG | + | chr7.4:17758463-17758482 | None:intergenic | 20.0% |
| !! | TTAATATTGTGACAATGAAA+TGG | - | chr7.4:17758465-17758484 | MS.gene39069:CDS | 20.0% |
| !!! | GCTTTTTTATGGATTTAATT+TGG | - | chr7.4:17759171-17759190 | MS.gene39069:intron | 20.0% |
| !!! | TCAATCTTTAACTCATTTTT+AGG | + | chr7.4:17760005-17760024 | None:intergenic | 20.0% |
| ! | AAAGAAGAATCTAGAAAAGA+AGG | - | chr7.4:17759674-17759693 | MS.gene39069:intron | 25.0% |
| ! | AATGGAGAAGCTAATTAATA+TGG | - | chr7.4:17758929-17758948 | MS.gene39069:CDS | 25.0% |
| ! | AATTCAGGTAACTTAGTAAA+AGG | - | chr7.4:17759532-17759551 | MS.gene39069:intron | 25.0% |
| ! | AGAAGATAGATCATAAATAG+TGG | + | chr7.4:17759214-17759233 | None:intergenic | 25.0% |
| ! | ATCATTTAAAGACAAGCATT+GGG | + | chr7.4:17758973-17758992 | None:intergenic | 25.0% |
| ! | ATTATGTTGTTAAAACCTCA+TGG | - | chr7.4:17759299-17759318 | MS.gene39069:intron | 25.0% |
| ! | CAATGAATTGAACTTTAATC+GGG | - | chr7.4:17758821-17758840 | MS.gene39069:CDS | 25.0% |
| ! | TATCATTTAAAGACAAGCAT+TGG | + | chr7.4:17758974-17758993 | None:intergenic | 25.0% |
| !! | TAAACAAATTTTGCAACATC+AGG | + | chr7.4:17760251-17760270 | None:intergenic | 25.0% |
| !! | TAAATAGTGGAAAAGGAATA+TGG | + | chr7.4:17759201-17759220 | None:intergenic | 25.0% |
| !! | TAATCATATAGCAAACCTTT+TGG | + | chr7.4:17759397-17759416 | None:intergenic | 25.0% |
| !! | TAGATCATAAATAGTGGAAA+AGG | + | chr7.4:17759208-17759227 | None:intergenic | 25.0% |
| !! | TCAATGTTTTCTTTTCTAAC+TGG | + | chr7.4:17760179-17760198 | None:intergenic | 25.0% |
| !! | TGCTTTAATGCTATATGTTT+TGG | - | chr7.4:17758523-17758542 | MS.gene39069:CDS | 25.0% |
| !! | TGTGATATTCTTTTTCCAAA+AGG | - | chr7.4:17759379-17759398 | MS.gene39069:intron | 25.0% |
| !! | TGTTCCATTATTTGTTAAAG+AGG | - | chr7.4:17758767-17758786 | MS.gene39069:CDS | 25.0% |
| !!! | ATTCTTCTTTTTTATCCTAG+TGG | + | chr7.4:17759664-17759683 | None:intergenic | 25.0% |
| !!! | TACTTTTTGGTTAATCTACT+AGG | - | chr7.4:17759442-17759461 | MS.gene39069:CDS | 25.0% |
| !!! | TATATGTTTTGGTACCTTTT+GGG | - | chr7.4:17758534-17758553 | MS.gene39069:CDS | 25.0% |
| !!! | TCACAAATATGGCTTTTTTA+TGG | - | chr7.4:17759160-17759179 | MS.gene39069:intron | 25.0% |
| !!! | TTAACTCATTTTTAGGCTTT+TGG | + | chr7.4:17759998-17760017 | None:intergenic | 25.0% |
| AAGTTGACACACATAGTAAT+TGG | - | chr7.4:17758993-17759012 | MS.gene39069:CDS | 30.0% | |
| AATGTTACCATAGATAAGCT+TGG | - | chr7.4:17758645-17758664 | MS.gene39069:CDS | 30.0% | |
| AGTTGACACACATAGTAATT+GGG | - | chr7.4:17758994-17759013 | MS.gene39069:CDS | 30.0% | |
| CTAATTAATATGGTGCGTAA+AGG | - | chr7.4:17758939-17758958 | MS.gene39069:CDS | 30.0% | |
| GAATAGACTTACGTATATGT+CGG | + | chr7.4:17759023-17759042 | None:intergenic | 30.0% | |
| GACTTTATTGTGTGTTTGAA+TGG | - | chr7.4:17759609-17759628 | MS.gene39069:intron | 30.0% | |
| GATGAATCTATTGCTCAAAT+AGG | - | chr7.4:17758491-17758510 | MS.gene39069:CDS | 30.0% | |
| GCAACGAAATGAAAGAATAA+CGG | + | chr7.4:17758602-17758621 | None:intergenic | 30.0% | |
| TATTTGTGAAACTAACATCC+AGG | + | chr7.4:17759149-17759168 | None:intergenic | 30.0% | |
| TCTGCCTCTTTAACAAATAA+TGG | + | chr7.4:17758774-17758793 | None:intergenic | 30.0% | |
| TTCATCAGATTCAGAATCAT+TGG | + | chr7.4:17758853-17758872 | None:intergenic | 30.0% | |
| ! | AATTCATTGATGGTCTGTAA+TGG | + | chr7.4:17758810-17758829 | None:intergenic | 30.0% |
| ! | AGCATAAGATGGCAAAATTT+TGG | - | chr7.4:17758435-17758454 | MS.gene39069:CDS | 30.0% |
| ! | CATAAGATGGCAAAATTTTG+GGG | - | chr7.4:17758437-17758456 | MS.gene39069:CDS | 30.0% |
| ! | GCATAAGATGGCAAAATTTT+GGG | - | chr7.4:17758436-17758455 | MS.gene39069:CDS | 30.0% |
| ! | GGATGTTAGTTTCACAAATA+TGG | - | chr7.4:17759149-17759168 | MS.gene39069:intron | 30.0% |
| ! | TGTTTAGTTCAAAACCCAAA+AGG | + | chr7.4:17758551-17758570 | None:intergenic | 30.0% |
| !!! | CTATATGTTTTGGTACCTTT+TGG | - | chr7.4:17758533-17758552 | MS.gene39069:CDS | 30.0% |
| AAAAGTAGACACAGAACACA+CGG | + | chr7.4:17759429-17759448 | None:intergenic | 35.0% | |
| AAACATTGAGAACCACTTCA+AGG | - | chr7.4:17760190-17760209 | MS.gene39069:intron | 35.0% | |
| AACATTGAGAACCACTTCAA+GGG | - | chr7.4:17760191-17760210 | MS.gene39069:intron | 35.0% | |
| ATAAAGATCCACTCTGAACA+GGG | + | chr7.4:17758740-17758759 | None:intergenic | 35.0% | |
| ATCTTATGCTTATCACCTTC+AGG | + | chr7.4:17758425-17758444 | None:intergenic | 35.0% | |
| ATTAATATGGTGCGTAAAGG+TGG | - | chr7.4:17758942-17758961 | MS.gene39069:CDS | 35.0% | |
| ATTGTGTGTTTGAATGGTTC+AGG | - | chr7.4:17759615-17759634 | MS.gene39069:intron | 35.0% | |
| CTGAATCTGATGAAAATGAC+CGG | - | chr7.4:17758859-17758878 | MS.gene39069:CDS | 35.0% | |
| GATGGGATTTAAGAAAGCAA+TGG | - | chr7.4:17760091-17760110 | MS.gene39069:intron | 35.0% | |
| GATTGCAGAATATCACTTGT+TGG | - | chr7.4:17758891-17758910 | MS.gene39069:CDS | 35.0% | |
| GGAATTAAAGAGACGACAAA+AGG | - | chr7.4:17759791-17759810 | MS.gene39069:CDS | 35.0% | |
| GTATCAATGTAGATGATTCC+TGG | - | chr7.4:17759128-17759147 | MS.gene39069:CDS | 35.0% | |
| TAATAATCAACCCGAAGAAC+AGG | - | chr7.4:17760334-17760353 | MS.gene39069:CDS | 35.0% | |
| TCAGGTAACTTAGTAAAAGG+AGG | - | chr7.4:17759535-17759554 | MS.gene39069:intron | 35.0% | |
| TGAAGGTGATAAGCATAAGA+TGG | - | chr7.4:17758424-17758443 | MS.gene39069:CDS | 35.0% | |
| TTCTGCAATCTGCTAAATAC+CGG | + | chr7.4:17758881-17758900 | None:intergenic | 35.0% | |
| ! | ATCTCTAAGTATCGTGAGAT+GGG | - | chr7.4:17760074-17760093 | MS.gene39069:intron | 35.0% |
| ! | ATTTGTGTTTCTACAGGGAA+AGG | - | chr7.4:17759239-17759258 | MS.gene39069:intron | 35.0% |
| ! | CATGCATTTGTGTTTCTACA+GGG | - | chr7.4:17759234-17759253 | MS.gene39069:intron | 35.0% |
| ! | TCATGCATTTGTGTTTCTAC+AGG | - | chr7.4:17759233-17759252 | MS.gene39069:intron | 35.0% |
| ! | TGAGGCTTATAAGCTTTATG+AGG | - | chr7.4:17760022-17760041 | MS.gene39069:CDS | 35.0% |
| !! | GTGAGAACTGTTATTTCTCT+AGG | - | chr7.4:17759271-17759290 | MS.gene39069:intron | 35.0% |
| !! | TGTGTTCTGTGTCTACTTTT+TGG | - | chr7.4:17759429-17759448 | MS.gene39069:CDS | 35.0% |
| !!! | TGGTTTTGAAGCTTCTGAAA+TGG | - | chr7.4:17758911-17758930 | MS.gene39069:CDS | 35.0% |
| AAAGAGACGACAAAAGGAGA+TGG | - | chr7.4:17759797-17759816 | MS.gene39069:CDS | 40.0% | |
| AAGAATCGACGAAGACTTGA+GGG | - | chr7.4:17759947-17759966 | MS.gene39069:CDS | 40.0% | |
| ACACAATAAAGTCGACGTAG+TGG | + | chr7.4:17759602-17759621 | None:intergenic | 40.0% | |
| ACATTGAGAACCACTTCAAG+GGG | - | chr7.4:17760192-17760211 | MS.gene39069:intron | 40.0% | |
| ACGTAGTGGCAGAAATCATA+AGG | + | chr7.4:17759588-17759607 | None:intergenic | 40.0% | |
| ATGAGCCTCCATATTCAAAG+AGG | - | chr7.4:17760300-17760319 | MS.gene39069:CDS | 40.0% | |
| ATGGATAGCATGTCTGAATG+AGG | - | chr7.4:17758707-17758726 | MS.gene39069:CDS | 40.0% | |
| ATTGAACTTTAATCGGGCTG+TGG | - | chr7.4:17758827-17758846 | MS.gene39069:CDS | 40.0% | |
| CATCTCACGATACTTAGAGA+TGG | + | chr7.4:17760075-17760094 | None:intergenic | 40.0% | |
| GACGACTTGAGTGCAAATTT+AGG | - | chr7.4:17759843-17759862 | MS.gene39069:CDS | 40.0% | |
| GAGGAGGATTGTAAGTCTAA+GGG | - | chr7.4:17760041-17760060 | MS.gene39069:CDS | 40.0% | |
| GATAAAGATCCACTCTGAAC+AGG | + | chr7.4:17758741-17758760 | None:intergenic | 40.0% | |
| GCAAAGTTAGGTCCTCTTTA+TGG | - | chr7.4:17759969-17759988 | MS.gene39069:CDS | 40.0% | |
| GGGATTTAAGAAAGCAATGG+AGG | - | chr7.4:17760094-17760113 | MS.gene39069:intron | 40.0% | |
| TAAGAATCGACGAAGACTTG+AGG | - | chr7.4:17759946-17759965 | MS.gene39069:CDS | 40.0% | |
| TCAAAATCATCCCCTTGAAG+TGG | + | chr7.4:17760205-17760224 | None:intergenic | 40.0% | |
| TGAGCCTCCATATTCAAAGA+GGG | - | chr7.4:17760301-17760320 | MS.gene39069:CDS | 40.0% | |
| TGAGGAGGATTGTAAGTCTA+AGG | - | chr7.4:17760040-17760059 | MS.gene39069:CDS | 40.0% | |
| TGTTAAAACCTCATGGCTTG+AGG | - | chr7.4:17759306-17759325 | MS.gene39069:intron | 40.0% | |
| ! | CATCTCTAAGTATCGTGAGA+TGG | - | chr7.4:17760073-17760092 | MS.gene39069:intron | 40.0% |
| ! | GGCTTATAAGCTTTATGAGG+AGG | - | chr7.4:17760025-17760044 | MS.gene39069:CDS | 40.0% |
| ! | GGCTTTTGGTATCCATAAAG+AGG | + | chr7.4:17759984-17760003 | None:intergenic | 40.0% |
| ! | TCATTGATGGTCTGTAATGG+AGG | + | chr7.4:17758807-17758826 | None:intergenic | 40.0% |
| ! | TTGATTATGCTGCTTCTCGT+AGG | - | chr7.4:17759736-17759755 | MS.gene39069:intron | 40.0% |
| !!! | GGGATGATTTTGAAGTTTCC+TGG | - | chr7.4:17760212-17760231 | MS.gene39069:intron | 40.0% |
| AATATGGTGCGTAAAGGTGG+AGG | - | chr7.4:17758945-17758964 | MS.gene39069:CDS | 45.0% | |
| AATTCCGCAATCTCAAAGCG+AGG | + | chr7.4:17759891-17759910 | None:intergenic | 45.0% | |
| ACGACAAAAGGAGATGGAGA+CGG | - | chr7.4:17759803-17759822 | MS.gene39069:CDS | 45.0% | |
| ACGACAAAAGGAGATGGAGA+TGG | - | chr7.4:17759803-17759822 | MS.gene39069:CDS | 45.0% | |
| ATCACAATCCTCAAGCCATG+AGG | + | chr7.4:17759317-17759336 | None:intergenic | 45.0% | |
| CAGTCAGCCAAGCTTATCTA+TGG | + | chr7.4:17758655-17758674 | None:intergenic | 45.0% | |
| CATAGATAAGCTTGGCTGAC+TGG | - | chr7.4:17758653-17758672 | MS.gene39069:CDS | 45.0% | |
| CATTGTACCGTCGTAGAAGA+GGG | + | chr7.4:17759357-17759376 | None:intergenic | 45.0% | |
| CTCTGTGCCCTCTTTGAATA+TGG | + | chr7.4:17760311-17760330 | None:intergenic | 45.0% | |
| GAAGACTTGAGGGCAAAGTT+AGG | - | chr7.4:17759957-17759976 | MS.gene39069:CDS | 45.0% | |
| GCAAATTTAGGTCCTCGTGA+TGG | - | chr7.4:17759855-17759874 | MS.gene39069:CDS | 45.0% | |
| TAATCAACCCGAAGAACAGG+AGG | - | chr7.4:17760337-17760356 | MS.gene39069:CDS | 45.0% | |
| TGGTTCAGGTCAGAAAACGT+TGG | - | chr7.4:17759629-17759648 | MS.gene39069:intron | 45.0% | |
| TGTGCCCTCTTTGAATATGG+AGG | + | chr7.4:17760308-17760327 | None:intergenic | 45.0% | |
| TTCAGGTCAGAAAACGTTGG+TGG | - | chr7.4:17759632-17759651 | MS.gene39069:intron | 45.0% | |
| ! | CAATCTCAAAGCGAGGCTTT+TGG | + | chr7.4:17759884-17759903 | None:intergenic | 45.0% |
| ! | GTGTTTCTACAGGGAAAGGA+AGG | - | chr7.4:17759243-17759262 | MS.gene39069:intron | 45.0% |
| ! | TATTCAAAGAGGGCACAGAG+TGG | - | chr7.4:17760311-17760330 | MS.gene39069:CDS | 45.0% |
| ! | TCAGGATCAGTCTTATCACC+AGG | + | chr7.4:17760233-17760252 | None:intergenic | 45.0% |
| !! | AAAGCCTCGCTTTGAGATTG+CGG | - | chr7.4:17759884-17759903 | MS.gene39069:CDS | 45.0% |
| !! | AAGAAAGCAATGGAGGCGTT+TGG | - | chr7.4:17760101-17760120 | MS.gene39069:intron | 45.0% |
| !! | TGTTGACTTAGCACAAGTGC+TGG | - | chr7.4:17759713-17759732 | MS.gene39069:intron | 45.0% |
| AGATCCACTCTGAACAGGGT+AGG | + | chr7.4:17758736-17758755 | None:intergenic | 50.0% | |
| AGCAAGTCCCTCTTCTACGA+CGG | - | chr7.4:17759347-17759366 | MS.gene39069:intron | 50.0% | |
| GAATCCTACCCTGTTCAGAG+TGG | - | chr7.4:17758729-17758748 | MS.gene39069:CDS | 50.0% | |
| GACTGTTCTTACGCTCCTGA+AGG | - | chr7.4:17758407-17758426 | MS.gene39069:CDS | 50.0% | |
| GCATTGTACCGTCGTAGAAG+AGG | + | chr7.4:17759358-17759377 | None:intergenic | 50.0% | |
| GTTGTGCACCTCCTGTTCTT+CGG | + | chr7.4:17760348-17760367 | None:intergenic | 50.0% | |
| TTGTGCACCTCCTGTTCTTC+GGG | + | chr7.4:17760347-17760366 | None:intergenic | 50.0% | |
| ! | AAGAACAGGAGGTGCACAAC+AGG | - | chr7.4:17760348-17760367 | MS.gene39069:CDS | 50.0% |
| ! | AGGTCAGAAAACGTTGGTGG+AGG | - | chr7.4:17759635-17759654 | MS.gene39069:intron | 50.0% |
| ! | GGCTTTTGGTATCCATCACG+AGG | + | chr7.4:17759870-17759889 | None:intergenic | 50.0% |
| GCGCGTTTGCTTCGAGATTG+CGG | - | chr7.4:17759770-17759789 | MS.gene39069:CDS | 55.0% | |
| !! | CGTTGGTGGAGGCATCCACT+AGG | - | chr7.4:17759646-17759665 | MS.gene39069:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 17758386 | 17760400 | 17758386 | ID=MS.gene39069 |
| chr7.4 | mRNA | 17758386 | 17760400 | 17758386 | ID=MS.gene39069.t1;Parent=MS.gene39069 |
| chr7.4 | exon | 17760274 | 17760400 | 17760274 | ID=MS.gene39069.t1.exon1;Parent=MS.gene39069.t1 |
| chr7.4 | CDS | 17760274 | 17760400 | 17760274 | ID=cds.MS.gene39069.t1;Parent=MS.gene39069.t1 |
| chr7.4 | exon | 17759756 | 17760071 | 17759756 | ID=MS.gene39069.t1.exon2;Parent=MS.gene39069.t1 |
| chr7.4 | CDS | 17759756 | 17760071 | 17759756 | ID=cds.MS.gene39069.t1;Parent=MS.gene39069.t1 |
| chr7.4 | exon | 17759386 | 17759531 | 17759386 | ID=MS.gene39069.t1.exon3;Parent=MS.gene39069.t1 |
| chr7.4 | CDS | 17759386 | 17759531 | 17759386 | ID=cds.MS.gene39069.t1;Parent=MS.gene39069.t1 |
| chr7.4 | exon | 17758386 | 17759149 | 17758386 | ID=MS.gene39069.t1.exon4;Parent=MS.gene39069.t1 |
| chr7.4 | CDS | 17758386 | 17759149 | 17758386 | ID=cds.MS.gene39069.t1;Parent=MS.gene39069.t1 |
| Gene Sequence |
| Protein sequence |
