AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41867


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41867.t1 MTR_7g088140 97.143 490 14 0 1 490 1 490 0.0 966
MS.gene41867.t1 MTR_7g088140 97.297 444 12 0 1 444 1 444 0.0 877
MS.gene41867.t1 MTR_5g088220 53.140 414 143 11 85 489 123 494 1.02e-108 332
MS.gene41867.t1 MTR_8g463890 44.727 275 138 4 87 358 33 296 5.56e-63 211
MS.gene41867.t1 MTR_4g088010 40.476 252 132 2 79 330 30 263 2.68e-62 207
MS.gene41867.t1 MTR_3g116130 40.816 98 58 0 122 219 24 121 3.38e-18 85.1
MS.gene41867.t1 MTR_3g116130 40.816 98 58 0 122 219 24 121 1.78e-17 84.3
MS.gene41867.t1 MTR_7g117495 44.048 84 47 0 122 205 13 96 2.51e-17 82.0
MS.gene41867.t1 MTR_7g117495 44.048 84 47 0 122 205 13 96 2.53e-17 82.0
MS.gene41867.t1 MTR_3g092490 43.529 85 48 0 122 206 21 105 1.42e-16 78.2
MS.gene41867.t1 MTR_3g092490 44.444 81 45 0 122 202 21 101 2.41e-16 79.0
MS.gene41867.t1 MTR_3g092490 44.444 81 45 0 122 202 21 101 2.43e-16 79.0
MS.gene41867.t1 MTR_5g064120 40.964 83 49 0 122 204 11 93 4.24e-16 79.0
MS.gene41867.t1 MTR_4g035310 41.667 84 49 0 122 205 11 94 7.69e-16 78.2
MS.gene41867.t1 MTR_4g035310 41.667 84 49 0 122 205 11 94 7.86e-16 77.8
MS.gene41867.t1 MTR_8g024520 42.169 83 48 0 123 205 21 103 1.72e-15 77.0
MS.gene41867.t1 MTR_8g024520 42.169 83 48 0 123 205 21 103 1.77e-15 77.0
MS.gene41867.t1 MTR_5g097580 26.667 180 127 4 128 306 7 182 4.03e-15 78.2
MS.gene41867.t1 MTR_5g097580 26.667 180 127 4 128 306 7 182 4.74e-15 77.8
MS.gene41867.t1 MTR_2g026180 21.992 241 153 4 128 354 5 224 3.04e-14 75.1
MS.gene41867.t1 MTR_3g103420 23.404 188 140 2 123 306 6 193 4.85e-13 70.9
MS.gene41867.t1 MTR_3g055990 24.339 189 137 2 128 313 7 192 5.28e-13 71.2
MS.gene41867.t1 MTR_3g055990 24.339 189 137 2 128 313 7 192 5.62e-13 71.2
MS.gene41867.t1 MTR_6g004810 24.757 206 133 4 124 327 42 227 8.75e-13 70.1
MS.gene41867.t1 MTR_5g017280 24.227 194 128 5 127 317 4 181 1.61e-12 69.3
MS.gene41867.t1 MTR_5g017280 24.227 194 128 5 127 317 4 181 1.90e-12 68.9
MS.gene41867.t1 MTR_7g105260 46.269 67 36 0 128 194 33 99 2.90e-12 64.7
MS.gene41867.t1 MTR_4g070190 44.118 68 37 1 119 186 1 67 1.98e-11 62.8
MS.gene41867.t1 MTR_4g070140 43.333 60 34 0 128 187 9 68 6.22e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41867.t1 AT2G41060 52.988 502 169 13 1 489 1 448 2.01e-150 437
MS.gene41867.t1 AT2G41060 52.988 502 169 13 1 489 1 448 2.01e-150 437
MS.gene41867.t1 AT2G41060 52.988 502 169 13 1 489 1 448 2.01e-150 437
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G56860 59.189 419 126 10 78 489 91 471 1.70e-146 428
MS.gene41867.t1 AT3G15010 46.256 227 111 1 87 313 35 250 7.92e-61 205
MS.gene41867.t1 AT3G15010 46.256 227 111 1 87 313 35 250 7.92e-61 205
MS.gene41867.t1 AT2G22090 50.394 127 63 0 80 206 57 183 1.20e-39 147
MS.gene41867.t1 AT2G22090 33.613 119 72 1 199 317 80 191 4.84e-12 67.8
MS.gene41867.t1 AT2G22090 50.394 127 63 0 80 206 57 183 1.42e-39 146
MS.gene41867.t1 AT2G22090 33.613 119 72 1 199 317 80 191 4.75e-12 67.8
MS.gene41867.t1 AT2G19380 47.656 128 67 0 79 206 360 487 2.81e-32 130
MS.gene41867.t1 AT2G22100 46.825 126 67 0 74 199 110 235 5.06e-32 126
MS.gene41867.t1 AT1G20880 43.878 98 53 1 122 219 19 114 8.32e-19 87.0
MS.gene41867.t1 AT1G20880 43.878 98 53 1 122 219 19 114 8.32e-19 87.0
MS.gene41867.t1 AT1G20880 43.878 98 53 1 122 219 19 114 8.32e-19 87.0
MS.gene41867.t1 AT1G76460 43.878 98 53 1 122 219 19 114 1.82e-18 86.3
MS.gene41867.t1 AT1G22330 42.857 91 51 1 122 211 12 102 4.07e-18 85.1
MS.gene41867.t1 AT1G22910 43.678 87 49 0 119 205 5 91 2.36e-17 82.0
MS.gene41867.t1 AT1G22910 41.935 93 54 0 119 211 5 97 2.41e-17 82.0
MS.gene41867.t1 AT1G22910 41.935 93 54 0 119 211 5 97 1.61e-16 81.3
MS.gene41867.t1 AT1G78260 40.964 83 49 0 122 204 12 94 2.24e-16 80.1
MS.gene41867.t1 AT4G36960 25.907 193 123 5 127 319 3 175 7.01e-16 79.7
MS.gene41867.t1 AT4G36960 25.907 193 123 5 127 319 3 175 7.01e-16 79.7
MS.gene41867.t1 AT1G33470 42.169 83 48 0 123 205 3 85 7.89e-16 77.4
MS.gene41867.t1 AT1G78260 40.964 83 49 0 122 204 12 94 8.33e-16 78.2
MS.gene41867.t1 AT1G33470 42.169 83 48 0 123 205 3 85 8.68e-16 77.4
MS.gene41867.t1 AT1G33470 42.045 88 50 1 123 210 3 89 9.74e-16 77.4
MS.gene41867.t1 AT5G53680 42.169 83 48 0 123 205 9 91 1.92e-15 74.7
MS.gene41867.t1 AT3G07810 24.107 224 153 6 124 339 3 217 5.16e-15 77.8
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 5.17e-15 77.4
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 5.17e-15 77.4
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 5.17e-15 77.4
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 5.17e-15 77.4
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 5.17e-15 77.4
MS.gene41867.t1 AT5G40490 25.698 179 117 2 128 305 43 206 5.89e-15 77.4
MS.gene41867.t1 AT1G17640 27.607 163 106 3 128 290 67 217 6.24e-15 76.6
MS.gene41867.t1 AT1G17640 27.607 163 106 3 128 290 67 217 6.24e-15 76.6
MS.gene41867.t1 AT1G17640 27.607 163 106 3 128 290 67 217 6.24e-15 76.6
MS.gene41867.t1 AT3G07810 24.107 224 153 6 124 339 3 217 6.49e-15 77.4
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 7.14e-15 77.0
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 7.14e-15 77.0
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 7.14e-15 77.0
MS.gene41867.t1 AT5G55550 24.309 181 134 2 128 306 7 186 7.14e-15 77.0
MS.gene41867.t1 AT4G26650 25.000 184 132 2 128 306 16 198 1.73e-14 75.9
MS.gene41867.t1 AT4G26650 25.000 184 132 2 128 306 13 195 2.19e-14 75.5
MS.gene41867.t1 AT5G47620 22.326 215 160 2 128 342 7 214 2.59e-14 75.5
MS.gene41867.t1 AT5G47620 22.326 215 160 2 128 342 7 214 2.59e-14 75.5
MS.gene41867.t1 AT5G47620 22.326 215 160 2 128 342 7 214 2.59e-14 75.5
MS.gene41867.t1 AT2G46780 42.169 83 48 0 123 205 18 100 6.30e-14 73.2
MS.gene41867.t1 AT2G46780 42.169 83 48 0 123 205 18 100 6.30e-14 73.2
MS.gene41867.t1 AT3G54770 39.286 84 51 0 122 205 12 95 7.37e-14 72.0
MS.gene41867.t1 AT3G54770 39.286 84 51 0 122 205 12 95 8.68e-14 72.0
MS.gene41867.t1 AT4G14300 23.810 189 135 4 123 306 2 186 4.43e-13 71.2
MS.gene41867.t1 AT4G14300 23.810 189 135 4 123 306 2 186 4.43e-13 71.2
MS.gene41867.t1 AT2G33410 21.978 182 137 3 128 306 7 186 6.04e-13 70.9
MS.gene41867.t1 AT3G06970 36.697 109 66 2 123 229 8 115 1.42e-12 68.9
MS.gene41867.t1 AT1G58470 22.051 195 141 1 123 306 2 196 1.76e-12 69.3
MS.gene41867.t1 AT1G58470 22.051 195 141 1 123 306 2 196 1.76e-12 69.3
MS.gene41867.t1 AT5G11412 37.500 96 59 1 110 205 36 130 2.67e-12 65.9
MS.gene41867.t1 AT5G53720 39.744 78 47 0 128 205 10 87 2.85e-12 63.5
MS.gene41867.t1 AT4G39260 41.667 60 35 0 128 187 7 66 1.58e-11 61.6
MS.gene41867.t1 AT2G21660 39.706 68 40 1 119 186 1 67 1.83e-11 62.8
MS.gene41867.t1 AT4G39260 40.625 64 38 0 128 191 7 70 2.23e-11 61.6
MS.gene41867.t1 AT4G39260 40.625 64 38 0 128 191 7 70 2.83e-11 60.5
MS.gene41867.t1 AT5G59865 53.846 52 24 0 124 175 23 74 4.46e-11 60.5
MS.gene41867.t1 AT1G60650 36.842 76 47 1 128 202 13 88 4.51e-11 64.3
MS.gene41867.t1 AT1G60650 36.842 76 47 1 128 202 13 88 4.51e-11 64.3
MS.gene41867.t1 AT3G23830 36.364 77 48 1 128 203 36 112 5.34e-11 60.8
MS.gene41867.t1 AT3G23830 36.364 77 48 1 128 203 36 112 5.34e-11 60.8
MS.gene41867.t1 AT4G39260 40.625 64 38 0 128 191 7 70 5.59e-11 61.6

Find 178 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGATAATGTTGGATTTAT+TGG 0.118007 7.4:+20204558 MS.gene41867:CDS
GCTGTTACGGATAAGGTTTC+AGG 0.206721 7.4:+20203994 MS.gene41867:CDS
TGAAAGGTTCTAGAAGCTTC+TGG 0.257529 7.4:-20203780 None:intergenic
CAGCTTGGACAGGGTGGTTC+TGG 0.259906 7.4:+20204936 MS.gene41867:CDS
TCCCATTACGGTTGGACTTA+TGG 0.269143 7.4:-20204859 None:intergenic
TCAGGGTGCTACGTTGGGGC+TGG 0.270572 7.4:+20204740 MS.gene41867:CDS
GACGGCGTTGCTTGCTTCTC+AGG 0.271562 7.4:+20204722 MS.gene41867:CDS
TGCTAGTGCTTCGGCTGCAC+AGG 0.273393 7.4:+20204659 MS.gene41867:CDS
GGGATGTATGGTTCTGGTTC+GGG 0.274637 7.4:-20203619 None:intergenic
GTATGGTTCTGGTTCGGGTT+CGG 0.276819 7.4:-20203614 None:intergenic
CGGCTCCTTCAACGCATTCC+TGG 0.280189 7.4:-20204064 None:intergenic
GCTTCTCAGGGTGCTACGTT+GGG 0.281924 7.4:+20204735 MS.gene41867:CDS
TATGGTTCTGGTTCGGGTTC+GGG 0.285674 7.4:-20203613 None:intergenic
TCGGGTTCGGGTACCGGTTC+CGG 0.298777 7.4:-20203601 None:intergenic
GCGTGTCAGCTGGCGTCTAT+TGG 0.324761 7.4:+20204114 MS.gene41867:CDS
TAAGGTTTCAGGGAAATCTA+AGG 0.326026 7.4:+20204005 MS.gene41867:CDS
TCAGGGAAATCTAAGGGTTA+TGG 0.338138 7.4:+20204012 MS.gene41867:CDS
TAGCCAACCAGGGCACTTAA+TGG 0.339964 7.4:+20204599 MS.gene41867:CDS
TATTCTTCGCCGGGGATGTA+TGG 0.343235 7.4:-20203631 None:intergenic
CATAGGAAAATCTTTGTTCA+TGG 0.347634 7.4:+20203898 MS.gene41867:CDS
TCGCCGGGGATGTATGGTTC+TGG 0.354687 7.4:-20203625 None:intergenic
GAAAATCTTTGTTCATGGTC+TGG 0.357831 7.4:+20203903 MS.gene41867:CDS
TAGTAATGTTGGAGCTGATT+TGG 0.360095 7.4:+20204224 MS.gene41867:CDS
TCTGGTTCGGGTTCGGGTAC+CGG 0.361049 7.4:-20203607 None:intergenic
GTTGGGGCTGGGTAATTTAC+TGG 0.362434 7.4:+20204752 MS.gene41867:CDS
TCGGGTACCGGTTCCGGTTT+AGG 0.366790 7.4:-20203595 None:intergenic
CCCTGTCCAAGCTGCTGGTT+CGG 0.367353 7.4:-20204927 None:intergenic
AAGATTTATATTAGTAATGT+TGG 0.368173 7.4:+20204213 MS.gene41867:CDS
GGTGGCGCCGTTGGTGGTGC+CGG 0.370594 7.4:+20204170 MS.gene41867:CDS
TTGTAAAGCTGTTACGGATA+AGG 0.376036 7.4:+20203987 MS.gene41867:CDS
GCCGTTGGTGGTGCCGGGTT+CGG 0.376950 7.4:+20204176 MS.gene41867:CDS
GGAAGTAGAGGAGGAGGAAG+AGG 0.377567 7.4:+20203696 MS.gene41867:CDS
GGTGTTCCTGCTGCTGGTCA+TGG 0.378632 7.4:+20204807 MS.gene41867:CDS
TCCGGTGGTTGCAGCGGCGG+TGG 0.380898 7.4:+20204152 MS.gene41867:CDS
GCTAGTGCTTCGGCTGCACA+GGG 0.387962 7.4:+20204660 MS.gene41867:CDS
GTGATGTTGCGGATCGGATT+CGG 0.390034 7.4:+20203851 MS.gene41867:CDS
GGTAATTTACTGGGGAGTCT+TGG 0.392575 7.4:+20204762 MS.gene41867:CDS
CCAACCGTAATGGGAGCATA+TGG 0.394272 7.4:+20204867 MS.gene41867:CDS
ACCTCTTCGTATTCTTCGCC+GGG 0.396618 7.4:-20203640 None:intergenic
TGTACCACAGGCTGGATTGC+AGG 0.397446 7.4:+20204896 MS.gene41867:CDS
ACCATAAGTCCAACCGTAAT+GGG 0.401409 7.4:+20204858 MS.gene41867:CDS
AAGGAGCCGCAGAAGAAGAT+TGG 0.406787 7.4:+20204078 MS.gene41867:CDS
GGTTCTGGAAGAGGGCAATA+TGG 0.407146 7.4:+20204951 MS.gene41867:CDS
ACTCCTGGTGTTCCTGCTGC+TGG 0.407521 7.4:+20204801 MS.gene41867:CDS
GGAGGAAGAGGAGGAAGAAG+AGG 0.415155 7.4:+20203708 MS.gene41867:CDS
GCCTGATTGTACCCGGCTAC+TGG 0.419681 7.4:-20204633 None:intergenic
TGCTTCTCAGGGTGCTACGT+TGG 0.424012 7.4:+20204734 MS.gene41867:CDS
GGGGATGTATGGTTCTGGTT+CGG 0.424830 7.4:-20203620 None:intergenic
TGTTGCATCTTCGTTGGCTT+AGG 0.432422 7.4:-20204447 None:intergenic
ATTCCCATATGCTCCCATTA+CGG 0.434145 7.4:-20204871 None:intergenic
TCTGACTCAATGGATTCAAT+TGG 0.434757 7.4:-20204518 None:intergenic
TGAAGAGGAAGTAGAGGAGG+AGG 0.435088 7.4:+20203690 MS.gene41867:CDS
GAGATTGAGGAAGGGCCGTT+AGG 0.435741 7.4:+20204285 MS.gene41867:CDS
TGAGGATTGTAAAGCTGTTA+CGG 0.437274 7.4:+20203981 MS.gene41867:CDS
AAAATCTTTGTTCATGGTCT+GGG 0.437456 7.4:+20203904 MS.gene41867:CDS
TTCGAGATTTGGAGAGATTG+AGG 0.437702 7.4:+20204272 MS.gene41867:CDS
ACCGCTCAAACAACATCAAC+CGG 0.438224 7.4:+20203570 MS.gene41867:CDS
CAGGGTGCTACGTTGGGGCT+GGG 0.438849 7.4:+20204741 MS.gene41867:CDS
GAGTGCGAGAAGGGCGTTGG+AGG 0.443617 7.4:+20204368 MS.gene41867:CDS
GTGGCGCCGTTGGTGGTGCC+GGG 0.444273 7.4:+20204171 MS.gene41867:CDS
ACAAACAAACAAAACCCTTT+CGG 0.444701 7.4:-20204330 None:intergenic
TGCAGCGGCGGTGGCGCCGT+TGG 0.446555 7.4:+20204161 MS.gene41867:CDS
AGCGGCGGTGGCGCCGTTGG+TGG 0.447724 7.4:+20204164 MS.gene41867:CDS
TACCATAAGTCCAACCGTAA+TGG 0.451057 7.4:+20204857 MS.gene41867:CDS
AACTGCGTCCTCTGACTCAA+TGG 0.452172 7.4:-20204528 None:intergenic
ACCGGTTCCGGTTTAGGCTC+CGG 0.452989 7.4:-20203589 None:intergenic
TGGAGCCGCACCTTATCATT+AGG 0.453562 7.4:+20204974 MS.gene41867:CDS
ACGGCGTTGCTTGCTTCTCA+GGG 0.455862 7.4:+20204723 MS.gene41867:CDS
ACATCAACCGGAGCCTAAAC+CGG 0.455977 7.4:+20203582 MS.gene41867:CDS
GCAGCAGCAACATGTGAATT+CGG 0.457605 7.4:+20204482 MS.gene41867:CDS
TTCGCAGTACGGTGAAATTG+AGG 0.458512 7.4:+20203963 MS.gene41867:CDS
CACCGGCAGGACCAGTAGCC+GGG 0.459411 7.4:+20204622 MS.gene41867:CDS
TAGGATGACGGCGTGTCAGC+TGG 0.462425 7.4:+20204104 MS.gene41867:CDS
TTGGATGCACAGAAGCTGTT+TGG 0.465368 7.4:+20204243 MS.gene41867:CDS
ACCAGTAGCCGGGTACAATC+AGG 0.465958 7.4:+20204632 MS.gene41867:CDS
ACCGGAGCCTAAACCGGAAC+CGG 0.466275 7.4:+20203588 MS.gene41867:CDS
GGCTGATGTTGCATCTTCGT+TGG 0.466640 7.4:-20204453 None:intergenic
TCCGAACCAGCAGCTTGGAC+AGG 0.467127 7.4:+20204926 MS.gene41867:CDS
TTTCAGAGACATGATAATGT+TGG 0.468367 7.4:+20204549 MS.gene41867:CDS
TGAATACGAAGAAGTTGAAG+AGG 0.469891 7.4:+20203675 MS.gene41867:CDS
AACCTCTTCGTATTCTTCGC+CGG 0.474451 7.4:-20203641 None:intergenic
TGCCCTTCAAACTCCTTATG+AGG 0.475217 7.4:-20204393 None:intergenic
AACCACCCTGTCCAAGCTGC+TGG 0.478162 7.4:-20204932 None:intergenic
GGACAGGGTGGTTCTGGAAG+AGG 0.478332 7.4:+20204942 MS.gene41867:CDS
CCTGTGCTGACTCCTGCACT+TGG 0.479274 7.4:+20204690 MS.gene41867:CDS
GCCGGTGCCATTAAGTGCCC+TGG 0.480370 7.4:-20204606 None:intergenic
GGAAGAGGAGGAAGAAGAGG+AGG 0.481424 7.4:+20203711 MS.gene41867:CDS
AGATTGAGGAAGGGCCGTTA+GGG 0.483939 7.4:+20204286 MS.gene41867:CDS
CGCAGAAGAAGATTGGGAAT+AGG 0.485921 7.4:+20204085 MS.gene41867:CDS
AGGAGCCGCAGAAGAAGATT+GGG 0.486295 7.4:+20204079 MS.gene41867:CDS
GCACCGGCAGGACCAGTAGC+CGG 0.489590 7.4:+20204621 MS.gene41867:CDS
GCTGACTCCTGCACTTGGAC+AGG 0.491550 7.4:+20204695 MS.gene41867:CDS
ACATGTTGCTGCTGCTGCTG+TGG 0.492062 7.4:-20204474 None:intergenic
ACCACCGGAGTTTGCTGCAC+CGG 0.492519 7.4:-20204138 None:intergenic
CTGCAACCCACCTAATGATA+AGG 0.494595 7.4:-20204984 None:intergenic
CTGTTACGGATAAGGTTTCA+GGG 0.495047 7.4:+20203995 MS.gene41867:CDS
TTAAGAGAAGGAGTGGAGCC+AGG 0.495710 7.4:+20204046 MS.gene41867:CDS
GAGTGCTGAGAGTGCGAGAA+GGG 0.496400 7.4:+20204359 MS.gene41867:CDS
TCCGAACCCGGCACCACCAA+CGG 0.496535 7.4:-20204177 None:intergenic
TGGAGCCAGGAATGCGTTGA+AGG 0.501170 7.4:+20204059 MS.gene41867:CDS
GGCGTTGGAGGAGCCTCATA+AGG 0.501894 7.4:+20204380 MS.gene41867:CDS
AACTCCGGTGGTTGCAGCGG+CGG 0.502632 7.4:+20204149 MS.gene41867:CDS
CTCGAGTCTTCTTTGCGAAG+CGG 0.510082 7.4:+20203816 MS.gene41867:CDS
GCAAGTAGTGCGGTTACTCC+TGG 0.510390 7.4:+20204786 MS.gene41867:CDS
AGTAGAGGAGGAGGAAGAGG+AGG 0.510787 7.4:+20203699 MS.gene41867:CDS
TCAGGCGGCTGCTAGTGCTT+CGG 0.518139 7.4:+20204650 MS.gene41867:CDS
GAGCCTCATAAGGAGTTTGA+AGG 0.521276 7.4:+20204390 MS.gene41867:CDS
GCCACCGCCGCTGCAACCAC+CGG 0.522847 7.4:-20204153 None:intergenic
TACCCGGCTACTGGTCCTGC+CGG 0.522880 7.4:-20204624 None:intergenic
AGAAGTTGAAGAGGAAGTAG+AGG 0.522907 7.4:+20203684 MS.gene41867:CDS
TTAGGGCTTGATAAGGTGAC+GGG 0.523648 7.4:+20204303 MS.gene41867:CDS
CTTTGTTCATGGTCTGGGAT+GGG 0.526425 7.4:+20203909 MS.gene41867:CDS
TCTTTGTTCATGGTCTGGGA+TGG 0.527569 7.4:+20203908 MS.gene41867:CDS
CCATATGCTCCCATTACGGT+TGG 0.527958 7.4:-20204867 None:intergenic
AGTGCTGCAGTTAGCCAACC+AGG 0.528280 7.4:+20204588 MS.gene41867:CDS
GGGAATGCTGTACCACAGGC+TGG 0.528806 7.4:+20204888 MS.gene41867:CDS
ATATGGGAATGCTGTACCAC+AGG 0.530348 7.4:+20204884 MS.gene41867:CDS
CCAAGTGCAGGAGTCAGCAC+AGG 0.530748 7.4:-20204690 None:intergenic
AGATTTGGAGAGATTGAGGA+AGG 0.531982 7.4:+20204276 MS.gene41867:CDS
TTGGGGCTGGGTAATTTACT+GGG 0.534028 7.4:+20204753 MS.gene41867:CDS
GTCAGCGCCTGTCCAAGTGC+AGG 0.536502 7.4:-20204702 None:intergenic
AGTTGAAGAGGAAGTAGAGG+AGG 0.538751 7.4:+20203687 MS.gene41867:CDS
TCAGCTGGCGTCTATTGGAC+CGG 0.541287 7.4:+20204119 MS.gene41867:CDS
CTTCTCAGGGTGCTACGTTG+GGG 0.551142 7.4:+20204736 MS.gene41867:CDS
CTATATCCGAACCAGCAGCT+TGG 0.552206 7.4:+20204921 MS.gene41867:CDS
GATAATGTTGGATTTATTGG+TGG 0.553110 7.4:+20204561 MS.gene41867:CDS
ACCAGGGCACTTAATGGCAC+CGG 0.554712 7.4:+20204605 MS.gene41867:CDS
AGCATCGTGATGTTGCGGAT+CGG 0.555477 7.4:+20203845 MS.gene41867:CDS
TGCACTTGGACAGGCGCTGA+CGG 0.557391 7.4:+20204704 MS.gene41867:CDS
CAACCGTAATGGGAGCATAT+GGG 0.558624 7.4:+20204868 MS.gene41867:CDS
TGACCAGCAGCAGGAACACC+AGG 0.559224 7.4:-20204804 None:intergenic
ATTACGGTTGGACTTATGGT+AGG 0.559596 7.4:-20204855 None:intergenic
AGGTGACGGGGAAGCCGAAA+GGG 0.560837 7.4:+20204316 MS.gene41867:CDS
GACAGGGTGGTTCTGGAAGA+GGG 0.561765 7.4:+20204943 MS.gene41867:CDS
CCGAACCAGCAGCTTGGACA+GGG 0.561837 7.4:+20204927 MS.gene41867:CDS
TGAACTCCATGACCAGCAGC+AGG 0.562412 7.4:-20204813 None:intergenic
GCAAACTCCGGTGGTTGCAG+CGG 0.562765 7.4:+20204146 MS.gene41867:CDS
CATTGTCAAAAGGCGATCGA+TGG 0.565884 7.4:+20204423 MS.gene41867:CDS
GGGCACTTAATGGCACCGGC+AGG 0.570589 7.4:+20204609 MS.gene41867:CDS
TGAGAGTGCGAGAAGGGCGT+TGG 0.571048 7.4:+20204365 MS.gene41867:CDS
AAGGTTTCAGGGAAATCTAA+GGG 0.574831 7.4:+20204006 MS.gene41867:CDS
AGGGCCGTTAGGGCTTGATA+AGG 0.575128 7.4:+20204296 MS.gene41867:CDS
CGGATTCGGAAGATTGCTGA+TGG 0.577731 7.4:+20203865 MS.gene41867:CDS
TTCGAAGCATCGTGATGTTG+CGG 0.584207 7.4:+20203840 MS.gene41867:CDS
CTATTCCCAATCTTCTTCTG+CGG 0.584260 7.4:-20204084 None:intergenic
AAGGTGACGGGGAAGCCGAA+AGG 0.589222 7.4:+20204315 MS.gene41867:CDS
TGGACCGGTGCAGCAAACTC+CGG 0.593968 7.4:+20204134 MS.gene41867:CDS
TCCGGTTGATGTTGTTTGAG+CGG 0.597080 7.4:-20203571 None:intergenic
AATTGAATCCATTGAGTCAG+AGG 0.601117 7.4:+20204520 MS.gene41867:CDS
GTGCCATTAAGTGCCCTGGT+TGG 0.602768 7.4:-20204602 None:intergenic
GTCACCTTATCAAGCCCTAA+CGG 0.606914 7.4:-20204300 None:intergenic
GGTTCTAGAAGCTTCTGGAT+CGG 0.609830 7.4:-20203775 None:intergenic
GAACCAGAACCATACATCCC+CGG 0.615819 7.4:+20203622 MS.gene41867:CDS
AGAGTGCTGAGAGTGCGAGA+AGG 0.617840 7.4:+20204358 MS.gene41867:CDS
TCTGGAAGAGGGCAATATGG+TGG 0.618817 7.4:+20204954 MS.gene41867:CDS
AGCCTCATAAGGAGTTTGAA+GGG 0.619966 7.4:+20204391 MS.gene41867:CDS
GTTAGGGCTTGATAAGGTGA+CGG 0.622365 7.4:+20204302 MS.gene41867:CDS
GAAGATTGGGAATAGGATGA+CGG 0.630207 7.4:+20204092 MS.gene41867:CDS
GATTTGGAGAGATTGAGGAA+GGG 0.631574 7.4:+20204277 MS.gene41867:CDS
ACCGGTGCAGCAAACTCCGG+TGG 0.641008 7.4:+20204137 MS.gene41867:CDS
CAAGTGCAGGAGTCAGCACA+GGG 0.646545 7.4:-20204689 None:intergenic
CTAGTGCTTCGGCTGCACAG+GGG 0.650854 7.4:+20204661 MS.gene41867:CDS
AGCAGCCGCCTGATTGTACC+CGG 0.651045 7.4:-20204640 None:intergenic
GGTTGATGTTGTTTGAGCGG+TGG 0.655449 7.4:-20203568 None:intergenic
CTGATGGTGATGCTTCCCAT+AGG 0.655842 7.4:+20203881 MS.gene41867:CDS
AACCAGCAGCTTGGACAGGG+TGG 0.658678 7.4:+20204930 MS.gene41867:CDS
CTCTGCGTATACTCCGAACC+CGG 0.663773 7.4:-20204189 None:intergenic
ACCCACCTAATGATAAGGTG+CGG 0.671031 7.4:-20204979 None:intergenic
AGTAGCCGGGTACAATCAGG+CGG 0.672302 7.4:+20204635 MS.gene41867:CDS
AGCACCTGCAATCCAGCCTG+TGG 0.672524 7.4:-20204900 None:intergenic
TGGGGCTGGGTAATTTACTG+GGG 0.684444 7.4:+20204754 MS.gene41867:CDS
GTGCTGCAGTTAGCCAACCA+GGG 0.684661 7.4:+20204589 MS.gene41867:CDS
CCTCTTCGTATTCTTCGCCG+GGG 0.698350 7.4:-20203639 None:intergenic
GAGTCTTGGAGCAAGTAGTG+CGG 0.701572 7.4:+20204776 MS.gene41867:CDS
GCTGGTCATGGAGTTCAGAG+TGG 0.717482 7.4:+20204819 MS.gene41867:CDS
CCCCGGCGAAGAATACGAAG+AGG 0.718090 7.4:+20203639 MS.gene41867:CDS
TAGGGCTTGATAAGGTGACG+GGG 0.738245 7.4:+20204304 MS.gene41867:CDS
CGGGTTCGGAGTATACGCAG+AGG 0.748307 7.4:+20204190 MS.gene41867:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTTATATTAGTAATGT+TGG + chr7.4:20204213-20204232 MS.gene41867:CDS 15.0%
!!! GATTTATTTTGTTTAAGAGA+AGG + chr7.4:20204034-20204053 MS.gene41867:CDS 20.0%
!! ATGAACAAAGATTTTCCTAT+GGG - chr7.4:20203899-20203918 None:intergenic 25.0%
!! CATGATAATGTTGGATTTAT+TGG + chr7.4:20204558-20204577 MS.gene41867:CDS 25.0%
!!! TTTGGTTTTTTTTCGAGATT+TGG + chr7.4:20204261-20204280 MS.gene41867:CDS 25.0%
AAAATCTTTGTTCATGGTCT+GGG + chr7.4:20203904-20203923 MS.gene41867:CDS 30.0%
ACAAACAAACAAAACCCTTT+CGG - chr7.4:20204333-20204352 None:intergenic 30.0%
CATAGGAAAATCTTTGTTCA+TGG + chr7.4:20203898-20203917 MS.gene41867:CDS 30.0%
GATAATGTTGGATTTATTGG+TGG + chr7.4:20204561-20204580 MS.gene41867:CDS 30.0%
! CATGAACAAAGATTTTCCTA+TGG - chr7.4:20203900-20203919 None:intergenic 30.0%
! GCATATTTTGCATTGTCAAA+AGG + chr7.4:20204413-20204432 MS.gene41867:CDS 30.0%
! TTTCAGAGACATGATAATGT+TGG + chr7.4:20204549-20204568 MS.gene41867:CDS 30.0%
!! ATTTTGTTTAAGAGAAGGAG+TGG + chr7.4:20204039-20204058 MS.gene41867:CDS 30.0%
AAGGTTTCAGGGAAATCTAA+GGG + chr7.4:20204006-20204025 MS.gene41867:CDS 35.0%
AATTGAATCCATTGAGTCAG+AGG + chr7.4:20204520-20204539 MS.gene41867:CDS 35.0%
GAAAATCTTTGTTCATGGTC+TGG + chr7.4:20203903-20203922 MS.gene41867:CDS 35.0%
TAAGGTTTCAGGGAAATCTA+AGG + chr7.4:20204005-20204024 MS.gene41867:CDS 35.0%
TAGTAATGTTGGAGCTGATT+TGG + chr7.4:20204224-20204243 MS.gene41867:CDS 35.0%
TGAATACGAAGAAGTTGAAG+AGG + chr7.4:20203675-20203694 MS.gene41867:CDS 35.0%
TGAGGATTGTAAAGCTGTTA+CGG + chr7.4:20203981-20204000 MS.gene41867:CDS 35.0%
TTGTAAAGCTGTTACGGATA+AGG + chr7.4:20203987-20204006 MS.gene41867:CDS 35.0%
! GAGATCTGTTCTTTTGTGAA+AGG - chr7.4:20203799-20203818 None:intergenic 35.0%
! TCTGACTCAATGGATTCAAT+TGG - chr7.4:20204521-20204540 None:intergenic 35.0%
ACCATAAGTCCAACCGTAAT+GGG + chr7.4:20204858-20204877 MS.gene41867:CDS 40.0%
AGAAGTTGAAGAGGAAGTAG+AGG + chr7.4:20203684-20203703 MS.gene41867:CDS 40.0%
AGATTTGGAGAGATTGAGGA+AGG + chr7.4:20204276-20204295 MS.gene41867:CDS 40.0%
AGCCTCATAAGGAGTTTGAA+GGG + chr7.4:20204391-20204410 MS.gene41867:CDS 40.0%
ATTACGGTTGGACTTATGGT+AGG - chr7.4:20204858-20204877 None:intergenic 40.0%
ATTCCCATATGCTCCCATTA+CGG - chr7.4:20204874-20204893 None:intergenic 40.0%
CTATTCCCAATCTTCTTCTG+CGG - chr7.4:20204087-20204106 None:intergenic 40.0%
CTGTTACGGATAAGGTTTCA+GGG + chr7.4:20203995-20204014 MS.gene41867:CDS 40.0%
GAAGATTGGGAATAGGATGA+CGG + chr7.4:20204092-20204111 MS.gene41867:CDS 40.0%
GATTTGGAGAGATTGAGGAA+GGG + chr7.4:20204277-20204296 MS.gene41867:CDS 40.0%
TACCATAAGTCCAACCGTAA+TGG + chr7.4:20204857-20204876 MS.gene41867:CDS 40.0%
TCAGGGAAATCTAAGGGTTA+TGG + chr7.4:20204012-20204031 MS.gene41867:CDS 40.0%
TTCGAGATTTGGAGAGATTG+AGG + chr7.4:20204272-20204291 MS.gene41867:CDS 40.0%
! ATTAACGCGTTTTCGCAGTA+CGG + chr7.4:20203952-20203971 MS.gene41867:CDS 40.0%
!! TGAAAGGTTCTAGAAGCTTC+TGG - chr7.4:20203783-20203802 None:intergenic 40.0%
AACCTCTTCGTATTCTTCGC+CGG - chr7.4:20203644-20203663 None:intergenic 45.0%
ACCGCTCAAACAACATCAAC+CGG + chr7.4:20203570-20203589 MS.gene41867:CDS 45.0%
AGTTGAAGAGGAAGTAGAGG+AGG + chr7.4:20203687-20203706 MS.gene41867:CDS 45.0%
ATATGGGAATGCTGTACCAC+AGG + chr7.4:20204884-20204903 MS.gene41867:CDS 45.0%
CATTGTCAAAAGGCGATCGA+TGG + chr7.4:20204423-20204442 MS.gene41867:CDS 45.0%
CGCAGAAGAAGATTGGGAAT+AGG + chr7.4:20204085-20204104 MS.gene41867:CDS 45.0%
GAGCCTCATAAGGAGTTTGA+AGG + chr7.4:20204390-20204409 MS.gene41867:CDS 45.0%
GCAGCAGCAACATGTGAATT+CGG + chr7.4:20204482-20204501 MS.gene41867:CDS 45.0%
GCTGTTACGGATAAGGTTTC+AGG + chr7.4:20203994-20204013 MS.gene41867:CDS 45.0%
GGTAATTTACTGGGGAGTCT+TGG + chr7.4:20204762-20204781 MS.gene41867:CDS 45.0%
GTCACCTTATCAAGCCCTAA+CGG - chr7.4:20204303-20204322 None:intergenic 45.0%
GTTAGGGCTTGATAAGGTGA+CGG + chr7.4:20204302-20204321 MS.gene41867:CDS 45.0%
TCCCATTACGGTTGGACTTA+TGG - chr7.4:20204862-20204881 None:intergenic 45.0%
TCTTTGTTCATGGTCTGGGA+TGG + chr7.4:20203908-20203927 MS.gene41867:CDS 45.0%
TGCCCTTCAAACTCCTTATG+AGG - chr7.4:20204396-20204415 None:intergenic 45.0%
TTAGGGCTTGATAAGGTGAC+GGG + chr7.4:20204303-20204322 MS.gene41867:CDS 45.0%
TTCGCAGTACGGTGAAATTG+AGG + chr7.4:20203963-20203982 MS.gene41867:CDS 45.0%
TTGGATGCACAGAAGCTGTT+TGG + chr7.4:20204243-20204262 MS.gene41867:CDS 45.0%
TTGGGGCTGGGTAATTTACT+GGG + chr7.4:20204753-20204772 MS.gene41867:CDS 45.0%
! CAACCGTAATGGGAGCATAT+GGG + chr7.4:20204868-20204887 MS.gene41867:CDS 45.0%
! CTTTGTTCATGGTCTGGGAT+GGG + chr7.4:20203909-20203928 MS.gene41867:CDS 45.0%
! TCCGGTTGATGTTGTTTGAG+CGG - chr7.4:20203574-20203593 None:intergenic 45.0%
!! GGTTCTAGAAGCTTCTGGAT+CGG - chr7.4:20203778-20203797 None:intergenic 45.0%
!! TGTTGCATCTTCGTTGGCTT+AGG - chr7.4:20204450-20204469 None:intergenic 45.0%
!! TTCGAAGCATCGTGATGTTG+CGG + chr7.4:20203840-20203859 MS.gene41867:CDS 45.0%
AACTGCGTCCTCTGACTCAA+TGG - chr7.4:20204531-20204550 None:intergenic 50.0%
AAGGAGCCGCAGAAGAAGAT+TGG + chr7.4:20204078-20204097 MS.gene41867:CDS 50.0%
ACATCAACCGGAGCCTAAAC+CGG + chr7.4:20203582-20203601 MS.gene41867:CDS 50.0%
ACCTCTTCGTATTCTTCGCC+GGG - chr7.4:20203643-20203662 None:intergenic 50.0%
AGATTGAGGAAGGGCCGTTA+GGG + chr7.4:20204286-20204305 MS.gene41867:CDS 50.0%
AGCATCGTGATGTTGCGGAT+CGG + chr7.4:20203845-20203864 MS.gene41867:CDS 50.0%
AGGAGCCGCAGAAGAAGATT+GGG + chr7.4:20204079-20204098 MS.gene41867:CDS 50.0%
CCATATGCTCCCATTACGGT+TGG - chr7.4:20204870-20204889 None:intergenic 50.0%
CGGATTCGGAAGATTGCTGA+TGG + chr7.4:20203865-20203884 MS.gene41867:CDS 50.0%
CTATATCCGAACCAGCAGCT+TGG + chr7.4:20204921-20204940 MS.gene41867:CDS 50.0%
CTCGAGTCTTCTTTGCGAAG+CGG + chr7.4:20203816-20203835 MS.gene41867:CDS 50.0%
GAACCAGAACCATACATCCC+CGG + chr7.4:20203622-20203641 MS.gene41867:CDS 50.0%
GAGTCTTGGAGCAAGTAGTG+CGG + chr7.4:20204776-20204795 MS.gene41867:CDS 50.0%
GGCTGATGTTGCATCTTCGT+TGG - chr7.4:20204456-20204475 None:intergenic 50.0%
GTGATGTTGCGGATCGGATT+CGG + chr7.4:20203851-20203870 MS.gene41867:CDS 50.0%
GTTGGGGCTGGGTAATTTAC+TGG + chr7.4:20204752-20204771 MS.gene41867:CDS 50.0%
TAGGGCTTGATAAGGTGACG+GGG + chr7.4:20204304-20204323 MS.gene41867:CDS 50.0%
TATTCTTCGCCGGGGATGTA+TGG - chr7.4:20203634-20203653 None:intergenic 50.0%
TCTGGAAGAGGGCAATATGG+TGG + chr7.4:20204954-20204973 MS.gene41867:CDS 50.0%
TGAAGAGGAAGTAGAGGAGG+AGG + chr7.4:20203690-20203709 MS.gene41867:CDS 50.0%
TGGGGCTGGGTAATTTACTG+GGG + chr7.4:20204754-20204773 MS.gene41867:CDS 50.0%
TTAAGAGAAGGAGTGGAGCC+AGG + chr7.4:20204046-20204065 MS.gene41867:CDS 50.0%
! CCAACCGTAATGGGAGCATA+TGG + chr7.4:20204867-20204886 MS.gene41867:CDS 50.0%
! CTGATGGTGATGCTTCCCAT+AGG + chr7.4:20203881-20203900 MS.gene41867:CDS 50.0%
! GGTTGATGTTGTTTGAGCGG+TGG - chr7.4:20203571-20203590 None:intergenic 50.0%
! TAGCCAACCAGGGCACTTAA+TGG + chr7.4:20204599-20204618 MS.gene41867:CDS 50.0%
!! GGGATGTATGGTTCTGGTTC+GGG - chr7.4:20203622-20203641 None:intergenic 50.0%
!! GGGGATGTATGGTTCTGGTT+CGG - chr7.4:20203623-20203642 None:intergenic 50.0%
!! GGTTCTGGAAGAGGGCAATA+TGG + chr7.4:20204951-20204970 MS.gene41867:CDS 50.0%
!! GTATGGTTCTGGTTCGGGTT+CGG - chr7.4:20203617-20203636 None:intergenic 50.0%
!! TATGGTTCTGGTTCGGGTTC+GGG - chr7.4:20203616-20203635 None:intergenic 50.0%
ACATGTTGCTGCTGCTGCTG+TGG - chr7.4:20204477-20204496 None:intergenic 55.0%
ACCAGTAGCCGGGTACAATC+AGG + chr7.4:20204632-20204651 MS.gene41867:CDS 55.0%
ACGGCGTTGCTTGCTTCTCA+GGG + chr7.4:20204723-20204742 MS.gene41867:CDS 55.0%
AGGGCCGTTAGGGCTTGATA+AGG + chr7.4:20204296-20204315 MS.gene41867:CDS 55.0%
AGTAGAGGAGGAGGAAGAGG+AGG + chr7.4:20203699-20203718 MS.gene41867:CDS 55.0%
AGTAGCCGGGTACAATCAGG+CGG + chr7.4:20204635-20204654 MS.gene41867:CDS 55.0%
AGTGCTGCAGTTAGCCAACC+AGG + chr7.4:20204588-20204607 MS.gene41867:CDS 55.0%
CAAGTGCAGGAGTCAGCACA+GGG - chr7.4:20204692-20204711 None:intergenic 55.0%
CCTCTTCGTATTCTTCGCCG+GGG - chr7.4:20203642-20203661 None:intergenic 55.0%
CTCTGCGTATACTCCGAACC+CGG - chr7.4:20204192-20204211 None:intergenic 55.0%
GAGATTGAGGAAGGGCCGTT+AGG + chr7.4:20204285-20204304 MS.gene41867:CDS 55.0%
GCAAGTAGTGCGGTTACTCC+TGG + chr7.4:20204786-20204805 MS.gene41867:CDS 55.0%
GCTGGTCATGGAGTTCAGAG+TGG + chr7.4:20204819-20204838 MS.gene41867:CDS 55.0%
GGAAGAGGAGGAAGAAGAGG+AGG + chr7.4:20203711-20203730 MS.gene41867:CDS 55.0%
GGAAGTAGAGGAGGAGGAAG+AGG + chr7.4:20203696-20203715 MS.gene41867:CDS 55.0%
GGAGGAAGAGGAGGAAGAAG+AGG + chr7.4:20203708-20203727 MS.gene41867:CDS 55.0%
GTGCTGCAGTTAGCCAACCA+GGG + chr7.4:20204589-20204608 MS.gene41867:CDS 55.0%
TCAGCTGGCGTCTATTGGAC+CGG + chr7.4:20204119-20204138 MS.gene41867:CDS 55.0%
TGAACTCCATGACCAGCAGC+AGG - chr7.4:20204816-20204835 None:intergenic 55.0%
TGGAGCCAGGAATGCGTTGA+AGG + chr7.4:20204059-20204078 MS.gene41867:CDS 55.0%
TGTACCACAGGCTGGATTGC+AGG + chr7.4:20204896-20204915 MS.gene41867:CDS 55.0%
! ACCAGGGCACTTAATGGCAC+CGG + chr7.4:20204605-20204624 MS.gene41867:CDS 55.0%
! CTTCTCAGGGTGCTACGTTG+GGG + chr7.4:20204736-20204755 MS.gene41867:CDS 55.0%
! GCTTCTCAGGGTGCTACGTT+GGG + chr7.4:20204735-20204754 MS.gene41867:CDS 55.0%
! GTGCCATTAAGTGCCCTGGT+TGG - chr7.4:20204605-20204624 None:intergenic 55.0%
! TGCTTCTCAGGGTGCTACGT+TGG + chr7.4:20204734-20204753 MS.gene41867:CDS 55.0%
!! AGAGTGCTGAGAGTGCGAGA+AGG + chr7.4:20204358-20204377 MS.gene41867:CDS 55.0%
!! GACAGGGTGGTTCTGGAAGA+GGG + chr7.4:20204943-20204962 MS.gene41867:CDS 55.0%
!! GAGTGCTGAGAGTGCGAGAA+GGG + chr7.4:20204359-20204378 MS.gene41867:CDS 55.0%
AACCACCCTGTCCAAGCTGC+TGG - chr7.4:20204935-20204954 None:intergenic 60.0%
AACCAGCAGCTTGGACAGGG+TGG + chr7.4:20204930-20204949 MS.gene41867:CDS 60.0%
ACCGGAGCCTAAACCGGAAC+CGG + chr7.4:20203588-20203607 MS.gene41867:CDS 60.0%
ACTCCTGGTGTTCCTGCTGC+TGG + chr7.4:20204801-20204820 MS.gene41867:CDS 60.0%
AGCACCTGCAATCCAGCCTG+TGG - chr7.4:20204903-20204922 None:intergenic 60.0%
AGCAGCCGCCTGATTGTACC+CGG - chr7.4:20204643-20204662 None:intergenic 60.0%
CAGCTTGGACAGGGTGGTTC+TGG + chr7.4:20204936-20204955 MS.gene41867:CDS 60.0%
CCAAGTGCAGGAGTCAGCAC+AGG - chr7.4:20204693-20204712 None:intergenic 60.0%
CCCCGGCGAAGAATACGAAG+AGG + chr7.4:20203639-20203658 MS.gene41867:CDS 60.0%
CCGAACCAGCAGCTTGGACA+GGG + chr7.4:20204927-20204946 MS.gene41867:CDS 60.0%
CGGCTCCTTCAACGCATTCC+TGG - chr7.4:20204067-20204086 None:intergenic 60.0%
CGGGTTCGGAGTATACGCAG+AGG + chr7.4:20204190-20204209 MS.gene41867:CDS 60.0%
CTAGTGCTTCGGCTGCACAG+GGG + chr7.4:20204661-20204680 MS.gene41867:CDS 60.0%
GACGGCGTTGCTTGCTTCTC+AGG + chr7.4:20204722-20204741 MS.gene41867:CDS 60.0%
GCAAACTCCGGTGGTTGCAG+CGG + chr7.4:20204146-20204165 MS.gene41867:CDS 60.0%
GCCTGATTGTACCCGGCTAC+TGG - chr7.4:20204636-20204655 None:intergenic 60.0%
GCGTGTCAGCTGGCGTCTAT+TGG + chr7.4:20204114-20204133 MS.gene41867:CDS 60.0%
GCTAGTGCTTCGGCTGCACA+GGG + chr7.4:20204660-20204679 MS.gene41867:CDS 60.0%
GGGAATGCTGTACCACAGGC+TGG + chr7.4:20204888-20204907 MS.gene41867:CDS 60.0%
GGTGTTCCTGCTGCTGGTCA+TGG + chr7.4:20204807-20204826 MS.gene41867:CDS 60.0%
TCAGGCGGCTGCTAGTGCTT+CGG + chr7.4:20204650-20204669 MS.gene41867:CDS 60.0%
TCCGAACCAGCAGCTTGGAC+AGG + chr7.4:20204926-20204945 MS.gene41867:CDS 60.0%
TCGCCGGGGATGTATGGTTC+TGG - chr7.4:20203628-20203647 None:intergenic 60.0%
TGACCAGCAGCAGGAACACC+AGG - chr7.4:20204807-20204826 None:intergenic 60.0%
TGCTAGTGCTTCGGCTGCAC+AGG + chr7.4:20204659-20204678 MS.gene41867:CDS 60.0%
TGGACCGGTGCAGCAAACTC+CGG + chr7.4:20204134-20204153 MS.gene41867:CDS 60.0%
! ACCGGTTCCGGTTTAGGCTC+CGG - chr7.4:20203592-20203611 None:intergenic 60.0%
! CCCTGTCCAAGCTGCTGGTT+CGG - chr7.4:20204930-20204949 None:intergenic 60.0%
! GCTGACTCCTGCACTTGGAC+AGG + chr7.4:20204695-20204714 MS.gene41867:CDS 60.0%
! GGCGTTGGAGGAGCCTCATA+AGG + chr7.4:20204380-20204399 MS.gene41867:CDS 60.0%
! TAGGATGACGGCGTGTCAGC+TGG + chr7.4:20204104-20204123 MS.gene41867:CDS 60.0%
! TGAGAGTGCGAGAAGGGCGT+TGG + chr7.4:20204365-20204384 MS.gene41867:CDS 60.0%
!! AAGGTGACGGGGAAGCCGAA+AGG + chr7.4:20204315-20204334 MS.gene41867:CDS 60.0%
!! ACCACCGGAGTTTGCTGCAC+CGG - chr7.4:20204141-20204160 None:intergenic 60.0%
!! AGGTGACGGGGAAGCCGAAA+GGG + chr7.4:20204316-20204335 MS.gene41867:CDS 60.0%
!! CCTGTGCTGACTCCTGCACT+TGG + chr7.4:20204690-20204709 MS.gene41867:CDS 60.0%
!! GGACAGGGTGGTTCTGGAAG+AGG + chr7.4:20204942-20204961 MS.gene41867:CDS 60.0%
!! TCGGGTACCGGTTCCGGTTT+AGG - chr7.4:20203598-20203617 None:intergenic 60.0%
!! TCTGGTTCGGGTTCGGGTAC+CGG - chr7.4:20203610-20203629 None:intergenic 60.0%
!! TGCACTTGGACAGGCGCTGA+CGG + chr7.4:20204704-20204723 MS.gene41867:CDS 60.0%
AACTCCGGTGGTTGCAGCGG+CGG + chr7.4:20204149-20204168 MS.gene41867:CDS 65.0%
ACCGGTGCAGCAAACTCCGG+TGG + chr7.4:20204137-20204156 MS.gene41867:CDS 65.0%
GTCAGCGCCTGTCCAAGTGC+AGG - chr7.4:20204705-20204724 None:intergenic 65.0%
TACCCGGCTACTGGTCCTGC+CGG - chr7.4:20204627-20204646 None:intergenic 65.0%
TCCGAACCCGGCACCACCAA+CGG - chr7.4:20204180-20204199 None:intergenic 65.0%
! CAGGGTGCTACGTTGGGGCT+GGG + chr7.4:20204741-20204760 MS.gene41867:CDS 65.0%
! TCAGGGTGCTACGTTGGGGC+TGG + chr7.4:20204740-20204759 MS.gene41867:CDS 65.0%
!! GAGTGCGAGAAGGGCGTTGG+AGG + chr7.4:20204368-20204387 MS.gene41867:CDS 65.0%
!! GCCGGTGCCATTAAGTGCCC+TGG - chr7.4:20204609-20204628 None:intergenic 65.0%
!! GGGCACTTAATGGCACCGGC+AGG + chr7.4:20204609-20204628 MS.gene41867:CDS 65.0%
!! TCGGGTTCGGGTACCGGTTC+CGG - chr7.4:20203604-20203623 None:intergenic 65.0%
CACCGGCAGGACCAGTAGCC+GGG + chr7.4:20204622-20204641 MS.gene41867:CDS 70.0%
! GCACCGGCAGGACCAGTAGC+CGG + chr7.4:20204621-20204640 MS.gene41867:CDS 70.0%
!! GCCGTTGGTGGTGCCGGGTT+CGG + chr7.4:20204176-20204195 MS.gene41867:CDS 70.0%
GCCACCGCCGCTGCAACCAC+CGG - chr7.4:20204156-20204175 None:intergenic 75.0%
TCCGGTGGTTGCAGCGGCGG+TGG + chr7.4:20204152-20204171 MS.gene41867:CDS 75.0%
!! GGTGGCGCCGTTGGTGGTGC+CGG + chr7.4:20204170-20204189 MS.gene41867:CDS 75.0%
!! GTGGCGCCGTTGGTGGTGCC+GGG + chr7.4:20204171-20204190 MS.gene41867:CDS 75.0%
! AGCGGCGGTGGCGCCGTTGG+TGG + chr7.4:20204164-20204183 MS.gene41867:CDS 80.0%
! TGCAGCGGCGGTGGCGCCGT+TGG + chr7.4:20204161-20204180 MS.gene41867:CDS 80.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 20203523 20204995 20203523 ID=MS.gene41867
chr7.4 mRNA 20203523 20204995 20203523 ID=MS.gene41867.t1;Parent=MS.gene41867
chr7.4 exon 20203523 20204995 20203523 ID=MS.gene41867.t1.exon1;Parent=MS.gene41867.t1
chr7.4 CDS 20203523 20204995 20203523 ID=cds.MS.gene41867.t1;Parent=MS.gene41867.t1
Gene Sequence

>MS.gene41867

ATGGTGAGAAAGAGAAAACTCGTCAAAGCTTCTCAACAAGAAGAACCACCGCTCAAACAACATCAACCGGAGCCTAAACCGGAACCGGTACCCGAACCCGAACCAGAACCATACATCCCCGGCGAAGAATACGAAGAGGTTGAAGAAGAAGTTGAATACGAAGAAGTTGAAGAGGAAGTAGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGGAAGAAGAAGAACAACAAATTCAAGTAGAAGAAGACGATGAACCGATCCAGAAGCTTCTAGAACCTTTCACAAAAGAACAGATCTCGAGTCTTCTTTGCGAAGCGGCTTCGAAGCATCGTGATGTTGCGGATCGGATTCGGAAGATTGCTGATGGTGATGCTTCCCATAGGAAAATCTTTGTTCATGGTCTGGGATGGGATACTACTTCAGCGACGCTGATTAACGCGTTTTCGCAGTACGGTGAAATTGAGGATTGTAAAGCTGTTACGGATAAGGTTTCAGGGAAATCTAAGGGTTATGGATTTATTTTGTTTAAGAGAAGGAGTGGAGCCAGGAATGCGTTGAAGGAGCCGCAGAAGAAGATTGGGAATAGGATGACGGCGTGTCAGCTGGCGTCTATTGGACCGGTGCAGCAAACTCCGGTGGTTGCAGCGGCGGTGGCGCCGTTGGTGGTGCCGGGTTCGGAGTATACGCAGAGGAAGATTTATATTAGTAATGTTGGAGCTGATTTGGATGCACAGAAGCTGTTTGGTTTTTTTTCGAGATTTGGAGAGATTGAGGAAGGGCCGTTAGGGCTTGATAAGGTGACGGGGAAGCCGAAAGGGTTTTGTTTGTTTGTGTATAAGAGTGCTGAGAGTGCGAGAAGGGCGTTGGAGGAGCCTCATAAGGAGTTTGAAGGGCATATTTTGCATTGTCAAAAGGCGATCGATGGTCCTAAGCCAACGAAGATGCAACATCAGCCACAGCAGCAGCAGCAACATGTGAATTCGGTGAATCATTTGAACCAATTGAATCCATTGAGTCAGAGGACGCAGTTTCAGAGACATGATAATGTTGGATTTATTGGTGGAAGTAGTGCTGCAGTTAGCCAACCAGGGCACTTAATGGCACCGGCAGGACCAGTAGCCGGGTACAATCAGGCGGCTGCTAGTGCTTCGGCTGCACAGGGGCTGAACCCTGTGCTGACTCCTGCACTTGGACAGGCGCTGACGGCGTTGCTTGCTTCTCAGGGTGCTACGTTGGGGCTGGGTAATTTACTGGGGAGTCTTGGAGCAAGTAGTGCGGTTACTCCTGGTGTTCCTGCTGCTGGTCATGGAGTTCAGAGTGGATACAGTGCTCAGCCTACCATAAGTCCAACCGTAATGGGAGCATATGGGAATGCTGTACCACAGGCTGGATTGCAGGTGCTATATCCGAACCAGCAGCTTGGACAGGGTGGTTCTGGAAGAGGGCAATATGGTGGAGCCGCACCTTATCATTAG

Protein sequence

>MS.gene41867.t1

MVRKRKLVKASQQEEPPLKQHQPEPKPEPVPEPEPEPYIPGEEYEEVEEEVEYEEVEEEVEEEEEEEEEEEEEEQQIQVEEDDEPIQKLLEPFTKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAVAPLVVPGSEYTQRKIYISNVGADLDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPTKMQHQPQQQQQHVNSVNHLNQLNPLSQRTQFQRHDNVGFIGGSSAAVSQPGHLMAPAGPVAGYNQAAASASAAQGLNPVLTPALGQALTALLASQGATLGLGNLLGSLGASSAVTPGVPAAGHGVQSGYSAQPTISPTVMGAYGNAVPQAGLQVLYPNQQLGQGGSGRGQYGGAAPYH