AlfalfaGEDB | MS.gene41867

M. sativa cultivar XinJiangDaYe / MS.gene41867

KEGG: K12741
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41867.t1	XP_003624837.2	94.9	490	25	0	1	490	1	490	7.40E-178	633.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41867.t1	Q9LES2	63.8	304	82	5	89	390	102	379	3.2e-97	357.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41867.t1	Q2HUH7	94.9	490	25	0	1	490	1	490	5.3e-178	633.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050084	MS.gene41867	0.817971	2.50E-52	-1.69E-46
MS.gene050085	MS.gene41867	0.836949	6.93E-57	-1.69E-46
MS.gene050359	MS.gene41867	0.814113	1.82E-51	-1.69E-46
MS.gene050689	MS.gene41867	0.800894	1.16E-48	-1.69E-46
MS.gene050752	MS.gene41867	0.825511	4.50E-54	-1.69E-46
MS.gene050838	MS.gene41867	0.83499	2.18E-56	-1.69E-46
MS.gene051003	MS.gene41867	0.855176	7.52E-62	-1.69E-46
MS.gene051234	MS.gene41867	0.804603	2.00E-49	-1.69E-46
MS.gene051343	MS.gene41867	0.853432	2.40E-61	-1.69E-46
MS.gene051642	MS.gene41867	0.823017	1.74E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene009450	MS.gene41867	PPI
MS.gene068060	MS.gene41867	PPI
MS.gene41867	MS.gene013909	PPI
MS.gene41867	MS.gene51623	PPI
MS.gene41867	MS.gene56252	PPI
MS.gene41867	MS.gene068060	PPI
MS.gene84379	MS.gene41867	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41867.t1	MTR_7g088140	97.143	490	14	0	1	490	1	490	0.0	966
MS.gene41867.t1	MTR_7g088140	97.297	444	12	0	1	444	1	444	0.0	877
MS.gene41867.t1	MTR_5g088220	53.140	414	143	11	85	489	123	494	1.02e-108	332
MS.gene41867.t1	MTR_8g463890	44.727	275	138	4	87	358	33	296	5.56e-63	211
MS.gene41867.t1	MTR_4g088010	40.476	252	132	2	79	330	30	263	2.68e-62	207
MS.gene41867.t1	MTR_3g116130	40.816	98	58	0	122	219	24	121	3.38e-18	85.1
MS.gene41867.t1	MTR_3g116130	40.816	98	58	0	122	219	24	121	1.78e-17	84.3
MS.gene41867.t1	MTR_7g117495	44.048	84	47	0	122	205	13	96	2.51e-17	82.0
MS.gene41867.t1	MTR_7g117495	44.048	84	47	0	122	205	13	96	2.53e-17	82.0
MS.gene41867.t1	MTR_3g092490	43.529	85	48	0	122	206	21	105	1.42e-16	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41867.t1	AT2G41060	52.988	502	169	13	1	489	1	448	2.01e-150	437
MS.gene41867.t1	AT2G41060	52.988	502	169	13	1	489	1	448	2.01e-150	437
MS.gene41867.t1	AT2G41060	52.988	502	169	13	1	489	1	448	2.01e-150	437
MS.gene41867.t1	AT3G56860	59.189	419	126	10	78	489	91	471	1.70e-146	428
MS.gene41867.t1	AT3G56860	59.189	419	126	10	78	489	91	471	1.70e-146	428
MS.gene41867.t1	AT3G56860	59.189	419	126	10	78	489	91	471	1.70e-146	428
MS.gene41867.t1	AT3G56860	59.189	419	126	10	78	489	91	471	1.70e-146	428
MS.gene41867.t1	AT3G56860	59.189	419	126	10	78	489	91	471	1.70e-146	428
MS.gene41867.t1	AT3G56860	59.189	419	126	10	78	489	91	471	1.70e-146	428
MS.gene41867.t1	AT3G56860	59.189	419	126	10	78	489	91	471	1.70e-146	428

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Find 178 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTTGTTCATGGTCT+GGG	0.437456	7.4:+20203904	MS.gene41867:CDS
AACCACCCTGTCCAAGCTGC+TGG	0.478162	7.4:-20204932	None:intergenic
AACCAGCAGCTTGGACAGGG+TGG	0.658678	7.4:+20204930	MS.gene41867:CDS
AACCTCTTCGTATTCTTCGC+CGG	0.474451	7.4:-20203641	None:intergenic
AACTCCGGTGGTTGCAGCGG+CGG	0.502632	7.4:+20204149	MS.gene41867:CDS
AACTGCGTCCTCTGACTCAA+TGG	0.452172	7.4:-20204528	None:intergenic
AAGATTTATATTAGTAATGT+TGG	0.368173	7.4:+20204213	MS.gene41867:CDS
AAGGAGCCGCAGAAGAAGAT+TGG	0.406787	7.4:+20204078	MS.gene41867:CDS
AAGGTGACGGGGAAGCCGAA+AGG	0.589222	7.4:+20204315	MS.gene41867:CDS
AAGGTTTCAGGGAAATCTAA+GGG	0.574831	7.4:+20204006	MS.gene41867:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCTTTGTTCATGGTCT+GGG	+	chr7.4:20203904-20203923	MS.gene41867:CDS	30.0%
ACAAACAAACAAAACCCTTT+CGG	-	chr7.4:20204333-20204352	None:intergenic	30.0%
CATAGGAAAATCTTTGTTCA+TGG	+	chr7.4:20203898-20203917	MS.gene41867:CDS	30.0%
GATAATGTTGGATTTATTGG+TGG	+	chr7.4:20204561-20204580	MS.gene41867:CDS	30.0%
AAGGTTTCAGGGAAATCTAA+GGG	+	chr7.4:20204006-20204025	MS.gene41867:CDS	35.0%
AATTGAATCCATTGAGTCAG+AGG	+	chr7.4:20204520-20204539	MS.gene41867:CDS	35.0%
GAAAATCTTTGTTCATGGTC+TGG	+	chr7.4:20203903-20203922	MS.gene41867:CDS	35.0%
TAAGGTTTCAGGGAAATCTA+AGG	+	chr7.4:20204005-20204024	MS.gene41867:CDS	35.0%
TAGTAATGTTGGAGCTGATT+TGG	+	chr7.4:20204224-20204243	MS.gene41867:CDS	35.0%
TGAATACGAAGAAGTTGAAG+AGG	+	chr7.4:20203675-20203694	MS.gene41867:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	20203523	20204995	20203523	ID=MS.gene41867
chr7.4	mRNA	20203523	20204995	20203523	ID=MS.gene41867.t1;Parent=MS.gene41867
chr7.4	exon	20203523	20204995	20203523	ID=MS.gene41867.t1.exon1;Parent=MS.gene41867.t1
chr7.4	CDS	20203523	20204995	20203523	ID=cds.MS.gene41867.t1;Parent=MS.gene41867.t1

Gene Sequence

>MS.gene41867

ATGGTGAGAAAGAGAAAACTCGTCAAAGCTTCTCAACAAGAAGAACCACCGCTCAAACAACATCAACCGGAGCCTAAACCGGAACCGGTACCCGAACCCGAACCAGAACCATACATCCCCGGCGAAGAATACGAAGAGGTTGAAGAAGAAGTTGAATACGAAGAAGTTGAAGAGGAAGTAGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGGAAGAAGAAGAACAACAAATTCAAGTAGAAGAAGACGATGAACCGATCCAGAAGCTTCTAGAACCTTTCACAAAAGAACAGATCTCGAGTCTTCTTTGCGAAGCGGCTTCGAAGCATCGTGATGTTGCGGATCGGATTCGGAAGATTGCTGATGGTGATGCTTCCCATAGGAAAATCTTTGTTCATGGTCTGGGATGGGATACTACTTCAGCGACGCTGATTAACGCGTTTTCGCAGTACGGTGAAATTGAGGATTGTAAAGCTGTTACGGATAAGGTTTCAGGGAAATCTAAGGGTTATGGATTTATTTTGTTTAAGAGAAGGAGTGGAGCCAGGAATGCGTTGAAGGAGCCGCAGAAGAAGATTGGGAATAGGATGACGGCGTGTCAGCTGGCGTCTATTGGACCGGTGCAGCAAACTCCGGTGGTTGCAGCGGCGGTGGCGCCGTTGGTGGTGCCGGGTTCGGAGTATACGCAGAGGAAGATTTATATTAGTAATGTTGGAGCTGATTTGGATGCACAGAAGCTGTTTGGTTTTTTTTCGAGATTTGGAGAGATTGAGGAAGGGCCGTTAGGGCTTGATAAGGTGACGGGGAAGCCGAAAGGGTTTTGTTTGTTTGTGTATAAGAGTGCTGAGAGTGCGAGAAGGGCGTTGGAGGAGCCTCATAAGGAGTTTGAAGGGCATATTTTGCATTGTCAAAAGGCGATCGATGGTCCTAAGCCAACGAAGATGCAACATCAGCCACAGCAGCAGCAGCAACATGTGAATTCGGTGAATCATTTGAACCAATTGAATCCATTGAGTCAGAGGACGCAGTTTCAGAGACATGATAATGTTGGATTTATTGGTGGAAGTAGTGCTGCAGTTAGCCAACCAGGGCACTTAATGGCACCGGCAGGACCAGTAGCCGGGTACAATCAGGCGGCTGCTAGTGCTTCGGCTGCACAGGGGCTGAACCCTGTGCTGACTCCTGCACTTGGACAGGCGCTGACGGCGTTGCTTGCTTCTCAGGGTGCTACGTTGGGGCTGGGTAATTTACTGGGGAGTCTTGGAGCAAGTAGTGCGGTTACTCCTGGTGTTCCTGCTGCTGGTCATGGAGTTCAGAGTGGATACAGTGCTCAGCCTACCATAAGTCCAACCGTAATGGGAGCATATGGGAATGCTGTACCACAGGCTGGATTGCAGGTGCTATATCCGAACCAGCAGCTTGGACAGGGTGGTTCTGGAAGAGGGCAATATGGTGGAGCCGCACCTTATCATTAG

Protein sequence

>MS.gene41867.t1

MVRKRKLVKASQQEEPPLKQHQPEPKPEPVPEPEPEPYIPGEEYEEVEEEVEYEEVEEEVEEEEEEEEEEEEEEQQIQVEEDDEPIQKLLEPFTKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAVAPLVVPGSEYTQRKIYISNVGADLDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPTKMQHQPQQQQQHVNSVNHLNQLNPLSQRTQFQRHDNVGFIGGSSAAVSQPGHLMAPAGPVAGYNQAAASASAAQGLNPVLTPALGQALTALLASQGATLGLGNLLGSLGASSAVTPGVPAAGHGVQSGYSAQPTISPTVMGAYGNAVPQAGLQVLYPNQQLGQGGSGRGQYGGAAPYH