Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42663.t1 | XP_024635939.1 | 97.8 | 460 | 10 | 0 | 3 | 462 | 167 | 626 | 6.80E-266 | 926 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42663.t1 | Q38961 | 41.3 | 300 | 160 | 8 | 154 | 446 | 124 | 414 | 5.6e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42663.t1 | A0A396IZH0 | 97.8 | 460 | 10 | 0 | 3 | 462 | 167 | 626 | 4.9e-266 | 926.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049596 | MS.gene42663 | 0.810567 | 1.08E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene42663 | 0.808883 | 2.49E-50 | -1.69E-46 |
| MS.gene050875 | MS.gene42663 | 0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene05124 | MS.gene42663 | 0.842343 | 2.74E-58 | -1.69E-46 |
| MS.gene051896 | MS.gene42663 | 0.818815 | 1.61E-52 | -1.69E-46 |
| MS.gene051914 | MS.gene42663 | 0.849012 | 4.25E-60 | -1.69E-46 |
| MS.gene052308 | MS.gene42663 | 0.847365 | 1.21E-59 | -1.69E-46 |
| MS.gene052367 | MS.gene42663 | 0.840702 | 7.41E-58 | -1.69E-46 |
| MS.gene053173 | MS.gene42663 | 0.85671 | 2.68E-62 | -1.69E-46 |
| MS.gene053348 | MS.gene42663 | 0.838268 | 3.18E-57 | -1.69E-46 |
| MS.gene053416 | MS.gene42663 | 0.842273 | 2.86E-58 | -1.69E-46 |
| MS.gene053417 | MS.gene42663 | 0.838937 | 2.14E-57 | -1.69E-46 |
| MS.gene054459 | MS.gene42663 | 0.832018 | 1.20E-55 | -1.69E-46 |
| MS.gene054551 | MS.gene42663 | 0.855204 | 7.38E-62 | -1.69E-46 |
| MS.gene054593 | MS.gene42663 | 0.850537 | 1.59E-60 | -1.69E-46 |
| MS.gene054633 | MS.gene42663 | 0.849977 | 2.29E-60 | -1.69E-46 |
| MS.gene054662 | MS.gene42663 | 0.839008 | 2.05E-57 | -1.69E-46 |
| MS.gene054885 | MS.gene42663 | 0.824448 | 8.03E-54 | -1.69E-46 |
| MS.gene055308 | MS.gene42663 | 0.854821 | 9.54E-62 | -1.69E-46 |
| MS.gene055578 | MS.gene42663 | 0.822801 | 1.95E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene42663 | 0.807372 | 5.22E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene42663 | 0.853664 | 2.06E-61 | -1.69E-46 |
| MS.gene05640 | MS.gene42663 | 0.911761 | 4.22E-83 | -1.69E-46 |
| MS.gene056526 | MS.gene42663 | 0.818913 | 1.53E-52 | -1.69E-46 |
| MS.gene056528 | MS.gene42663 | 0.821661 | 3.59E-53 | -1.69E-46 |
| MS.gene057367 | MS.gene42663 | 0.808021 | 3.80E-50 | -1.69E-46 |
| MS.gene057458 | MS.gene42663 | 0.844738 | 6.28E-59 | -1.69E-46 |
| MS.gene058128 | MS.gene42663 | 0.833951 | 3.97E-56 | -1.69E-46 |
| MS.gene058853 | MS.gene42663 | 0.851168 | 1.06E-60 | -1.69E-46 |
| MS.gene059553 | MS.gene42663 | 0.866239 | 3.30E-65 | -1.69E-46 |
| MS.gene059616 | MS.gene42663 | 0.80883 | 2.55E-50 | -1.69E-46 |
| MS.gene060473 | MS.gene42663 | 0.833064 | 6.61E-56 | -1.69E-46 |
| MS.gene060565 | MS.gene42663 | 0.832088 | 1.15E-55 | -1.69E-46 |
| MS.gene06093 | MS.gene42663 | 0.898183 | 6.81E-77 | -1.69E-46 |
| MS.gene061099 | MS.gene42663 | 0.836412 | 9.50E-57 | -1.69E-46 |
| MS.gene061260 | MS.gene42663 | 0.849708 | 2.72E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42663.t1 | MTR_3g105470 | 96.753 | 462 | 12 | 1 | 1 | 462 | 165 | 623 | 0.0 | 939 |
| MS.gene42663.t1 | MTR_7g084670 | 40.433 | 277 | 155 | 5 | 175 | 446 | 170 | 441 | 7.65e-65 | 218 |
| MS.gene42663.t1 | MTR_7g084670 | 40.433 | 277 | 155 | 5 | 175 | 446 | 170 | 441 | 1.50e-64 | 217 |
| MS.gene42663.t1 | MTR_7g082860 | 37.276 | 279 | 159 | 6 | 177 | 444 | 43 | 316 | 5.89e-51 | 186 |
| MS.gene42663.t1 | MTR_7g082860 | 37.276 | 279 | 159 | 6 | 177 | 444 | 43 | 316 | 6.83e-51 | 186 |
| MS.gene42663.t1 | MTR_7g082860 | 36.842 | 285 | 164 | 6 | 177 | 450 | 43 | 322 | 1.03e-50 | 186 |
| MS.gene42663.t1 | MTR_7g082860 | 37.276 | 279 | 159 | 6 | 177 | 444 | 43 | 316 | 1.11e-50 | 185 |
| MS.gene42663.t1 | MTR_7g082860 | 36.842 | 285 | 164 | 6 | 177 | 450 | 43 | 322 | 1.12e-50 | 186 |
| MS.gene42663.t1 | MTR_0280s0030 | 32.906 | 234 | 128 | 8 | 203 | 415 | 18 | 243 | 2.43e-27 | 115 |
| MS.gene42663.t1 | MTR_1g052840 | 33.333 | 210 | 107 | 6 | 203 | 387 | 18 | 219 | 5.10e-26 | 110 |
| MS.gene42663.t1 | MTR_1g020070 | 93.478 | 46 | 3 | 0 | 237 | 282 | 1 | 46 | 8.82e-24 | 99.8 |
| MS.gene42663.t1 | MTR_8g465220 | 88.372 | 43 | 5 | 0 | 285 | 327 | 37 | 79 | 3.45e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42663.t1 | AT2G45700 | 66.443 | 447 | 136 | 5 | 17 | 462 | 242 | 675 | 0.0 | 598 |
| MS.gene42663.t1 | AT2G45700 | 64.723 | 343 | 107 | 5 | 17 | 358 | 242 | 571 | 7.48e-148 | 436 |
| MS.gene42663.t1 | AT3G26680 | 40.323 | 310 | 169 | 8 | 144 | 446 | 114 | 414 | 2.58e-64 | 215 |
| MS.gene42663.t1 | AT3G26680 | 40.323 | 310 | 169 | 8 | 144 | 446 | 114 | 414 | 2.58e-64 | 215 |
| MS.gene42663.t1 | AT3G26680 | 40.323 | 310 | 169 | 8 | 144 | 446 | 114 | 414 | 2.58e-64 | 215 |
| MS.gene42663.t1 | AT3G26680 | 39.935 | 308 | 169 | 8 | 144 | 444 | 114 | 412 | 6.82e-62 | 207 |
| MS.gene42663.t1 | AT1G66730 | 37.847 | 288 | 160 | 7 | 177 | 450 | 54 | 336 | 4.76e-53 | 192 |
| MS.gene42663.t1 | AT1G27410 | 31.356 | 236 | 137 | 7 | 197 | 415 | 12 | 239 | 6.47e-29 | 118 |
Find 113 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTTGCAATTTGCCTTTC+TGG | 0.032332 | 3.3:-86659533 | None:intergenic |
| TTCTGGTTTCTAATCCTTCT+AGG | 0.191762 | 3.3:-86659516 | None:intergenic |
| GACGATGTGGGAGCTCAATT+TGG | 0.211717 | 3.3:+86658768 | MS.gene42663:CDS |
| CCTTGTATGGCACACCATTT+AGG | 0.239725 | 3.3:-86659756 | None:intergenic |
| TCTCCTACTGGTTGGACATT+TGG | 0.266596 | 3.3:+86663213 | MS.gene42663:CDS |
| TGTATTACAGCCTCTTGTTT+TGG | 0.274957 | 3.3:-86662320 | None:intergenic |
| ACCCTGCTGCCACCTTCTTC+CGG | 0.280118 | 3.3:-86663256 | None:intergenic |
| TACCAGCTATTTCAACCTTT+TGG | 0.280971 | 3.3:-86661055 | None:intergenic |
| AGGAAAAGAAAGACTATTCT+TGG | 0.321061 | 3.3:+86662626 | MS.gene42663:intron |
| CCCTGCTGCCACCTTCTTCC+GGG | 0.322980 | 3.3:-86663255 | None:intergenic |
| AGGTTCAAAGAGTATAATTA+TGG | 0.338497 | 3.3:-86661117 | None:intergenic |
| TATGTTCATATTTACAAGTC+TGG | 0.362610 | 3.3:-86660994 | None:intergenic |
| ATAGTTGCTTTCTCTCCTAC+TGG | 0.374779 | 3.3:+86663201 | MS.gene42663:CDS |
| CCAAGCCTCACCTTACCATT+TGG | 0.382191 | 3.3:-86661140 | None:intergenic |
| AGTGGGAACAATCTCCTCTT+AGG | 0.384009 | 3.3:-86660204 | None:intergenic |
| GTAATTAATTTGTTTGCTGC+TGG | 0.388311 | 3.3:-86659591 | None:intergenic |
| GTCGTTTCATTTCGTTCTAC+AGG | 0.388709 | 3.3:-86659663 | None:intergenic |
| TAGGAGAGAAAGCAACTATA+AGG | 0.389667 | 3.3:-86663197 | None:intergenic |
| AGATTCGCGACATTCCTAAA+TGG | 0.397110 | 3.3:+86659742 | MS.gene42663:CDS |
| ATTAAAAGCTTCTGCTTGAA+TGG | 0.397535 | 3.3:-86662357 | None:intergenic |
| CCATGTATCCATTCAACAAC+AGG | 0.397971 | 3.3:-86658804 | None:intergenic |
| ATCAAAGTATCACCTTATAA+TGG | 0.404366 | 3.3:-86663280 | None:intergenic |
| GGCAGCAGGGTACCATTATA+AGG | 0.406094 | 3.3:+86663268 | MS.gene42663:CDS |
| ATGCTGAGGTTGAGCCTAGA+AGG | 0.419950 | 3.3:+86659502 | MS.gene42663:CDS |
| AACGAAAACTTCTTCATACT+TGG | 0.420266 | 3.3:-86658838 | None:intergenic |
| TCAAGAATTAAAGTGTGAAT+AGG | 0.423144 | 3.3:-86661322 | None:intergenic |
| TGAGCTCCCACATCGTCATT+AGG | 0.423381 | 3.3:-86658762 | None:intergenic |
| CGTTAGGGAAGAAGTTGATT+GGG | 0.428295 | 3.3:+86658857 | MS.gene42663:CDS |
| CTCATTGGCAGCTATACAAT+TGG | 0.430101 | 3.3:+86662395 | MS.gene42663:CDS |
| AAATCTGAGCGAAAAGTTGA+TGG | 0.430864 | 3.3:+86659558 | MS.gene42663:CDS |
| TCGTTAGGGAAGAAGTTGAT+TGG | 0.433523 | 3.3:+86658856 | MS.gene42663:CDS |
| AAAATATGTAATTTATCATA+TGG | 0.437584 | 3.3:-86661023 | None:intergenic |
| ACGATGTGGGAGCTCAATTT+GGG | 0.440843 | 3.3:+86658769 | MS.gene42663:CDS |
| TCGGAAAGGTGTTCCTTGTA+TGG | 0.443532 | 3.3:-86659769 | None:intergenic |
| TCCCGGAAGAAGGTGGCAGC+AGG | 0.457757 | 3.3:+86663254 | MS.gene42663:CDS |
| TTCCCACTGGTAGCAAATCC+CGG | 0.459567 | 3.3:-86659624 | None:intergenic |
| TGGTATTGGCGTGACTTGTT+TGG | 0.463977 | 3.3:+86661073 | MS.gene42663:CDS |
| AACCAAAAGGTTGAAATAGC+TGG | 0.464893 | 3.3:+86661053 | MS.gene42663:CDS |
| TTGGATGCCAACCATTGTCC+AGG | 0.465014 | 3.3:+86661092 | MS.gene42663:CDS |
| AGCCTCACCTTACCATTTGG+AGG | 0.467125 | 3.3:-86661137 | None:intergenic |
| CCTAAATGGTGTGCCATACA+AGG | 0.467417 | 3.3:+86659756 | MS.gene42663:CDS |
| CTTTCCATGATTGAATGACT+TGG | 0.468183 | 3.3:-86660949 | None:intergenic |
| AAAACTCCCCTGTTGTTGAA+TGG | 0.469285 | 3.3:+86658796 | MS.gene42663:CDS |
| CTTAGAAGAGGAATCGCCTT+AGG | 0.471900 | 3.3:+86659444 | MS.gene42663:CDS |
| TTGCTTTCTCTCCTACTGGT+TGG | 0.480522 | 3.3:+86663205 | MS.gene42663:CDS |
| ATACTCTTTGAACCTCCAAA+TGG | 0.489494 | 3.3:+86661125 | MS.gene42663:CDS |
| CTCACCAAGTCATTCAATCA+TGG | 0.494648 | 3.3:+86660945 | MS.gene42663:CDS |
| AAGGTTGAAATAGCTGGTAT+TGG | 0.497008 | 3.3:+86661059 | MS.gene42663:CDS |
| CTCGCTTGAACTTGAAGAGG+AGG | 0.497023 | 3.3:-86659469 | None:intergenic |
| AGCTTGCAAGTGTCCACATA+GGG | 0.499017 | 3.3:-86662782 | None:intergenic |
| GTTGAATGGATACATGGTCT+CGG | 0.500479 | 3.3:+86658810 | MS.gene42663:CDS |
| ATAGGACATGTCCGCAGTAA+AGG | 0.503218 | 3.3:-86661304 | None:intergenic |
| TACCTGTGGGTTGCAGTATG+TGG | 0.505307 | 3.3:-86661347 | None:intergenic |
| TTGAATGGATACATGGTCTC+GGG | 0.505973 | 3.3:+86658811 | MS.gene42663:CDS |
| CCTGTTGTTGAATGGATACA+TGG | 0.506812 | 3.3:+86658804 | MS.gene42663:CDS |
| TATCTAGGCAGTACTTCATA+CGG | 0.511622 | 3.3:+86661246 | MS.gene42663:intron |
| TTGAAGGATCTCTTAAACAT+GGG | 0.525506 | 3.3:+86659372 | MS.gene42663:intron |
| AAAAGAAAGACTATTCTTGG+AGG | 0.527109 | 3.3:+86662629 | MS.gene42663:CDS |
| CTTGAAGGATCTCTTAAACA+TGG | 0.529942 | 3.3:+86659371 | MS.gene42663:intron |
| TTCATTTCGTTCTACAGGAG+GGG | 0.530245 | 3.3:-86659658 | None:intergenic |
| CTTTGAACCTCCAAATGGTA+AGG | 0.531062 | 3.3:+86661130 | MS.gene42663:CDS |
| TTTCATTTCGTTCTACAGGA+GGG | 0.539073 | 3.3:-86659659 | None:intergenic |
| AAAAGAAGTCTCCCGGAAGA+AGG | 0.539697 | 3.3:+86663244 | MS.gene42663:CDS |
| TTTGTGAATGCAGATTATCA+AGG | 0.542931 | 3.3:+86660921 | MS.gene42663:intron |
| AAGCTTGCAAGTGTCCACAT+AGG | 0.550517 | 3.3:-86662783 | None:intergenic |
| CGAAATGAAACGACCACAAG+TGG | 0.550706 | 3.3:+86659672 | MS.gene42663:CDS |
| GATGCTTTCAAATACCTAAG+AGG | 0.552944 | 3.3:+86660190 | MS.gene42663:CDS |
| ATATTCATGTTGCCCCTATG+TGG | 0.553521 | 3.3:+86662769 | MS.gene42663:CDS |
| TACAAGTCTGGCTGTAACAG+AGG | 0.554290 | 3.3:-86660982 | None:intergenic |
| TTCCGGGATTTGCTACCAGT+GGG | 0.558013 | 3.3:+86659622 | MS.gene42663:CDS |
| TTTCTCGCTTGAACTTGAAG+AGG | 0.559015 | 3.3:-86659472 | None:intergenic |
| GTTTCATTTCGTTCTACAGG+AGG | 0.563033 | 3.3:-86659660 | None:intergenic |
| TATGGAACCTGGACAATGGT+TGG | 0.563928 | 3.3:-86661099 | None:intergenic |
| CTCTTCTGTCAGCCATTGCA+AGG | 0.565749 | 3.3:-86658883 | None:intergenic |
| TAAGAGGAGATTGTTCCCAC+TGG | 0.566874 | 3.3:+86660206 | MS.gene42663:CDS |
| ATGTTTGGAGTTTACAGAGG+AGG | 0.568194 | 3.3:+86662710 | MS.gene42663:CDS |
| ACTTGAAGAGGAGGTTCCTA+AGG | 0.571607 | 3.3:-86659460 | None:intergenic |
| GTTTCTCACACACTTCCACA+TGG | 0.572957 | 3.3:+86660228 | MS.gene42663:CDS |
| AACATGGGTATAACTGCACT+TGG | 0.574353 | 3.3:+86659387 | MS.gene42663:CDS |
| AGACTTGTAAATATGAACAT+AGG | 0.576180 | 3.3:+86660996 | MS.gene42663:CDS |
| ATCTAGGCAGTACTTCATAC+GGG | 0.578082 | 3.3:+86661247 | MS.gene42663:intron |
| TCGATCAGACGAGCCACTTG+TGG | 0.583119 | 3.3:-86659685 | None:intergenic |
| AAGAGTATAATTATGGAACC+TGG | 0.584062 | 3.3:-86661110 | None:intergenic |
| AAAATGTTTGGAGTTTACAG+AGG | 0.587038 | 3.3:+86662707 | MS.gene42663:CDS |
| TTTCCGGGATTTGCTACCAG+TGG | 0.590063 | 3.3:+86659621 | MS.gene42663:CDS |
| ATGTTGCTTACCACTCGGAA+AGG | 0.604789 | 3.3:-86659783 | None:intergenic |
| TTGCCAAATGTCCAACCAGT+AGG | 0.605425 | 3.3:-86663216 | None:intergenic |
| AGAAGTCTCCCGGAAGAAGG+TGG | 0.608363 | 3.3:+86663247 | MS.gene42663:CDS |
| CGAGAAACATGAGGATGCTG+AGG | 0.613762 | 3.3:+86659488 | MS.gene42663:CDS |
| GCTCTCTCAGAACTTAGAAG+AGG | 0.616459 | 3.3:+86659432 | MS.gene42663:CDS |
| TGAGCGAAAAGTTGATGGAA+CGG | 0.620111 | 3.3:+86659563 | MS.gene42663:CDS |
| GTATGACTTTCCAAAACAAG+AGG | 0.622699 | 3.3:+86662310 | MS.gene42663:intron |
| CACCACATACTGCAACCCAC+AGG | 0.625431 | 3.3:+86661345 | MS.gene42663:CDS |
| CTTGCAATGGCTGACAGAAG+AGG | 0.630164 | 3.3:+86658884 | MS.gene42663:CDS |
| CCCGGAAGAAGGTGGCAGCA+GGG | 0.632641 | 3.3:+86663255 | MS.gene42663:CDS |
| AGAAGGATTAGAAACCAGAA+AGG | 0.634777 | 3.3:+86659519 | MS.gene42663:CDS |
| GCTCCCACATCGTCATTAGG+AGG | 0.635319 | 3.3:-86658759 | None:intergenic |
| TGTGCCTCCTAATGACGATG+TGG | 0.641693 | 3.3:+86658755 | MS.gene42663:CDS |
| ACTGGTTGGACATTTGGCAA+AGG | 0.642161 | 3.3:+86663219 | MS.gene42663:CDS |
| AAGTTCAAGCGAGAAACATG+AGG | 0.646074 | 3.3:+86659479 | MS.gene42663:CDS |
| CATGTATCCATTCAACAACA+GGG | 0.647033 | 3.3:-86658803 | None:intergenic |
| TAATTATGGAACCTGGACAA+TGG | 0.648706 | 3.3:-86661103 | None:intergenic |
| AAACAGACTTACGGTCCATG+TGG | 0.660496 | 3.3:-86660243 | None:intergenic |
| TTGATTGGGATACCTTGCAA+TGG | 0.668184 | 3.3:+86658871 | MS.gene42663:CDS |
| TTACAGAGGAGGATATGCAG+TGG | 0.677061 | 3.3:+86662721 | MS.gene42663:CDS |
| GCACATATCAAGTCAATATG+CGG | 0.689672 | 3.3:+86662818 | MS.gene42663:CDS |
| GCTTGCAAGTGTCCACATAG+GGG | 0.691672 | 3.3:-86662781 | None:intergenic |
| GTGCCTCCTAATGACGATGT+GGG | 0.694456 | 3.3:+86658756 | MS.gene42663:CDS |
| TGGCAAACAATCCTTTACTG+CGG | 0.706170 | 3.3:+86661293 | MS.gene42663:CDS |
| ACAAGGAACACCTTTCCGAG+TGG | 0.728495 | 3.3:+86659773 | MS.gene42663:CDS |
| GAAGTGTGTGAGAAACCAGT+GGG | 0.728648 | 3.3:-86660221 | None:intergenic |
| ATGTATCCATTCAACAACAG+GGG | 0.731322 | 3.3:-86658802 | None:intergenic |
| GGAAGTGTGTGAGAAACCAG+TGG | 0.737251 | 3.3:-86660222 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATGTAATTTATCATA+TGG | - | chr3.3:86661026-86661045 | None:intergenic | 10.0% |
| !! | AATGAACTTAAATAAAATTA+AGG | - | chr3.3:86661452-86661471 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAATATCAAC+AGG | - | chr3.3:86659820-86659839 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAATACATCTGA+TGG | - | chr3.3:86663159-86663178 | None:intergenic | 15.0% |
| !! | ATGCAAAAATTATTAGAAAA+AGG | - | chr3.3:86662027-86662046 | None:intergenic | 15.0% |
| !! | CATTAAAAGAAATAAACAAA+TGG | - | chr3.3:86661647-86661666 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAAGAACATAT+TGG | - | chr3.3:86661863-86661882 | None:intergenic | 15.0% |
| !! | TTACAATAAAAAGAACATAT+TGG | - | chr3.3:86661890-86661909 | None:intergenic | 15.0% |
| !!! | ATAAAATAATTTTTTTTCCC+AGG | + | chr3.3:86660830-86660849 | MS.gene42663:intron | 15.0% |
| !!! | ATTAATTACTGAATATTTTC+CGG | + | chr3.3:86659605-86659624 | MS.gene42663:CDS | 15.0% |
| !!! | TTAAATTAATTTGAATTTCG+AGG | - | chr3.3:86660456-86660475 | None:intergenic | 15.0% |
| !!! | TTATCTTTAAAAAGGTTTTT+AGG | - | chr3.3:86661770-86661789 | None:intergenic | 15.0% |
| !!! | TTCTTTTTATTGTAAGATTA+GGG | + | chr3.3:86661895-86661914 | MS.gene42663:intron | 15.0% |
| !!! | TTTATATCTTTATTTCTCAA+CGG | - | chr3.3:86661738-86661757 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAAACCATATTTG+AGG | - | chr3.3:86662072-86662091 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTATTCAGAGT+CGG | + | chr3.3:86663169-86663188 | MS.gene42663:intron | 15.0% |
| !! | AAATATGTCATATAAAAGTG+TGG | + | chr3.3:86660663-86660682 | MS.gene42663:intron | 20.0% |
| !! | ATGAAATATATTGTGTCTTA+AGG | - | chr3.3:86659863-86659882 | None:intergenic | 20.0% |
| !! | ATTATTAGAAAAAGGCTAAA+TGG | - | chr3.3:86662019-86662038 | None:intergenic | 20.0% |
| !! | ATTGTAATAATCTGCTAATA+AGG | - | chr3.3:86660865-86660884 | None:intergenic | 20.0% |
| !! | ATTGTATAAAACATGATTGA+GGG | - | chr3.3:86660055-86660074 | None:intergenic | 20.0% |
| !! | GAACAATCAAATAAATTCAA+AGG | - | chr3.3:86658983-86659002 | None:intergenic | 20.0% |
| !! | TTAAGACACAATATATTTCA+TGG | + | chr3.3:86659862-86659881 | MS.gene42663:intron | 20.0% |
| !!! | AACTAAAAAGTTGTGTTATT+CGG | - | chr3.3:86663118-86663137 | None:intergenic | 20.0% |
| !!! | ACAGTTTAGAATTTAAGTTT+TGG | + | chr3.3:86660500-86660519 | MS.gene42663:intron | 20.0% |
| !!! | ACTCTGATTGTAATAATTTT+CGG | - | chr3.3:86660738-86660757 | None:intergenic | 20.0% |
| !!! | CACATTATTTTAGTAAGTAT+AGG | + | chr3.3:86662183-86662202 | MS.gene42663:intron | 20.0% |
| !!! | GTTCTTTTTATTGTAAGATT+AGG | + | chr3.3:86661894-86661913 | MS.gene42663:intron | 20.0% |
| !!! | GTTTTTGTTTTTGTTTATCT+AGG | + | chr3.3:86661231-86661250 | MS.gene42663:intron | 20.0% |
| !!! | TAAACTCCAAACATTTTAAA+AGG | - | chr3.3:86662704-86662723 | None:intergenic | 20.0% |
| !!! | TAATATATTTCTGTAGGAAA+TGG | - | chr3.3:86661837-86661856 | None:intergenic | 20.0% |
| !!! | TGGTATTAATATATTTCTGT+AGG | - | chr3.3:86661843-86661862 | None:intergenic | 20.0% |
| !!! | TTAACTTTGAAATTTTACTC+TGG | + | chr3.3:86661483-86661502 | MS.gene42663:intron | 20.0% |
| !!! | TTAATTACTGAATATTTTCC+GGG | + | chr3.3:86659606-86659625 | MS.gene42663:CDS | 20.0% |
| ! | AAAAAAAGATAGGGCAAAAT+TGG | - | chr3.3:86660119-86660138 | None:intergenic | 25.0% |
| ! | AATACCAAAAAGTTAGCATA+TGG | - | chr3.3:86662874-86662893 | None:intergenic | 25.0% |
| ! | AATAGTTTAATACACTTCGT+CGG | - | chr3.3:86661966-86661985 | None:intergenic | 25.0% |
| ! | ACATTATGTAACGTAAAAGA+TGG | - | chr3.3:86659928-86659947 | None:intergenic | 25.0% |
| ! | ACGTTTCAAACAAATACTAA+AGG | - | chr3.3:86662483-86662502 | None:intergenic | 25.0% |
| ! | AGACTTGTAAATATGAACAT+AGG | + | chr3.3:86660996-86661015 | MS.gene42663:CDS | 25.0% |
| ! | AGATCAAAATATATTGAAGC+GGG | + | chr3.3:86662257-86662276 | MS.gene42663:intron | 25.0% |
| ! | ATCCACATCAAAAAAAGATA+GGG | - | chr3.3:86660128-86660147 | None:intergenic | 25.0% |
| ! | ATCTAAAAATATGTCTGGTT+TGG | + | chr3.3:86659201-86659220 | MS.gene42663:intron | 25.0% |
| ! | ATGGAGACAATAAAATTCAT+TGG | - | chr3.3:86660763-86660782 | None:intergenic | 25.0% |
| ! | ATTCGTGAATTGTTTCAATT+TGG | + | chr3.3:86660426-86660445 | MS.gene42663:intron | 25.0% |
| ! | CAACGATAATTAAGCTTATT+AGG | - | chr3.3:86661174-86661193 | None:intergenic | 25.0% |
| ! | CAATTCACGAATATTTAACA+AGG | - | chr3.3:86660418-86660437 | None:intergenic | 25.0% |
| ! | CATTGTATAAAACATGATTG+AGG | - | chr3.3:86660056-86660075 | None:intergenic | 25.0% |
| ! | CGTTTCAAACAAATACTAAA+GGG | - | chr3.3:86662482-86662501 | None:intergenic | 25.0% |
| ! | CTAATAAGCTTAATTATCGT+TGG | + | chr3.3:86661172-86661191 | MS.gene42663:intron | 25.0% |
| ! | GAGATCAAAATATATTGAAG+CGG | + | chr3.3:86662256-86662275 | MS.gene42663:intron | 25.0% |
| ! | GATCATTCATTATTCATATG+TGG | - | chr3.3:86661376-86661395 | None:intergenic | 25.0% |
| ! | GTTACCAAATTGTACTAAAT+TGG | - | chr3.3:86660547-86660566 | None:intergenic | 25.0% |
| ! | TAGAGATCTAAAAATATGTC+TGG | + | chr3.3:86659196-86659215 | MS.gene42663:intron | 25.0% |
| ! | TATGTTCATATTTACAAGTC+TGG | - | chr3.3:86660997-86661016 | None:intergenic | 25.0% |
| ! | TCAAGAATTAAAGTGTGAAT+AGG | - | chr3.3:86661325-86661344 | None:intergenic | 25.0% |
| ! | TTCAAGTACAAAAAGTAAAG+AGG | - | chr3.3:86659357-86659376 | None:intergenic | 25.0% |
| ! | TTGTATAAAACATGATTGAG+GGG | - | chr3.3:86660054-86660073 | None:intergenic | 25.0% |
| !! | AGGTTCAAAGAGTATAATTA+TGG | - | chr3.3:86661120-86661139 | None:intergenic | 25.0% |
| !! | CTAACACGTTTAATTTATAC+AGG | + | chr3.3:86660168-86660187 | MS.gene42663:intron | 25.0% |
| !! | CTCTGATTGTAATAATTTTC+GGG | - | chr3.3:86660737-86660756 | None:intergenic | 25.0% |
| !! | CTGGAAGTTTATCTTTAAAA+AGG | - | chr3.3:86661778-86661797 | None:intergenic | 25.0% |
| !! | TATTTCTGATTCCTTATTTC+CGG | + | chr3.3:86659947-86659966 | MS.gene42663:intron | 25.0% |
| !!! | AATTTGAAAATTAGCTCTGT+AGG | + | chr3.3:86659044-86659063 | MS.gene42663:intron | 25.0% |
| !!! | ATAGTTTTGAAGTGTAGATT+TGG | + | chr3.3:86662515-86662534 | MS.gene42663:intron | 25.0% |
| !!! | ATTGTAATAATTTTCGGGTA+GGG | - | chr3.3:86660732-86660751 | None:intergenic | 25.0% |
| !!! | ATTTGGTAACAGTTTAGTTT+TGG | + | chr3.3:86660557-86660576 | MS.gene42663:intron | 25.0% |
| !!! | GGTATTTTTCAATGTTGAAA+AGG | + | chr3.3:86662888-86662907 | MS.gene42663:intron | 25.0% |
| !!! | TCTTTACTTTTTGTACTTGA+AGG | + | chr3.3:86659356-86659375 | MS.gene42663:intron | 25.0% |
| !!! | TGTGCTTTTTATGTTTCTAT+AGG | + | chr3.3:86662606-86662625 | MS.gene42663:intron | 25.0% |
| !!! | TTCTTAAAAGCATTTTAGCA+AGG | + | chr3.3:86662152-86662171 | MS.gene42663:intron | 25.0% |
| AAAAGAAAGACTATTCTTGG+AGG | + | chr3.3:86662629-86662648 | MS.gene42663:CDS | 30.0% | |
| AAACAAAAACAAAAACCAGC+TGG | - | chr3.3:86661227-86661246 | None:intergenic | 30.0% | |
| AAACATGTTTGCCTCAAATA+TGG | + | chr3.3:86662058-86662077 | MS.gene42663:intron | 30.0% | |
| AAAGGAACATATCTTAAAGC+AGG | + | chr3.3:86662906-86662925 | MS.gene42663:intron | 30.0% | |
| AACGAAAACTTCTTCATACT+TGG | - | chr3.3:86658841-86658860 | None:intergenic | 30.0% | |
| AATTCAAAGGAATAAGTCTC+TGG | - | chr3.3:86658970-86658989 | None:intergenic | 30.0% | |
| AATTCACTTTGACACTATCT+TGG | - | chr3.3:86661513-86661532 | None:intergenic | 30.0% | |
| AGGAAAAGAAAGACTATTCT+TGG | + | chr3.3:86662626-86662645 | MS.gene42663:intron | 30.0% | |
| ATAGTTTAATACACTTCGTC+GGG | - | chr3.3:86661965-86661984 | None:intergenic | 30.0% | |
| ATTAAAAGCTTCTGCTTGAA+TGG | - | chr3.3:86662360-86662379 | None:intergenic | 30.0% | |
| ATTCACTTTGACACTATCTT+GGG | - | chr3.3:86661512-86661531 | None:intergenic | 30.0% | |
| CAAATTGTACTAAATTGGTG+AGG | - | chr3.3:86660542-86660561 | None:intergenic | 30.0% | |
| CATCACATGATAAAACTCAT+TGG | + | chr3.3:86660780-86660799 | MS.gene42663:intron | 30.0% | |
| CTCACCAATTTAGTACAATT+TGG | + | chr3.3:86660540-86660559 | MS.gene42663:intron | 30.0% | |
| GATCCACATCAAAAAAAGAT+AGG | - | chr3.3:86660129-86660148 | None:intergenic | 30.0% | |
| GTCTTAAGGAAATGCATAAA+GGG | - | chr3.3:86659849-86659868 | None:intergenic | 30.0% | |
| TATATTGCATAGACACAGAA+AGG | - | chr3.3:86660336-86660355 | None:intergenic | 30.0% | |
| TGTAAAAGATCAATGTACCA+TGG | + | chr3.3:86659088-86659107 | MS.gene42663:intron | 30.0% | |
| TGTCTTAAGGAAATGCATAA+AGG | - | chr3.3:86659850-86659869 | None:intergenic | 30.0% | |
| TTGAAGGATCTCTTAAACAT+GGG | + | chr3.3:86659372-86659391 | MS.gene42663:intron | 30.0% | |
| TTTACAGCTTTCAAATGTGA+TGG | + | chr3.3:86663086-86663105 | MS.gene42663:intron | 30.0% | |
| TTTGTGAATGCAGATTATCA+AGG | + | chr3.3:86660921-86660940 | MS.gene42663:intron | 30.0% | |
| ! | AAAATGTTTGGAGTTTACAG+AGG | + | chr3.3:86662707-86662726 | MS.gene42663:CDS | 30.0% |
| ! | AAACATAAAAAGCACACACA+AGG | - | chr3.3:86662602-86662621 | None:intergenic | 30.0% |
| ! | AACATAAAAAGCACACACAA+GGG | - | chr3.3:86662601-86662620 | None:intergenic | 30.0% |
| ! | AAGAGTATAATTATGGAACC+TGG | - | chr3.3:86661113-86661132 | None:intergenic | 30.0% |
| ! | ACAACCATATGCTAACTTTT+TGG | + | chr3.3:86662867-86662886 | MS.gene42663:intron | 30.0% |
| ! | AGGTTTAAAGTTTCTGTTGA+TGG | + | chr3.3:86659321-86659340 | MS.gene42663:intron | 30.0% |
| ! | AGTATGAAGAAGTTTTCGTT+AGG | + | chr3.3:86658841-86658860 | MS.gene42663:CDS | 30.0% |
| ! | ATAAAATGTTGCTTACCACT+CGG | - | chr3.3:86659791-86659810 | None:intergenic | 30.0% |
| ! | CGAGTAATCATTTTGCAATT+AGG | + | chr3.3:86659126-86659145 | MS.gene42663:intron | 30.0% |
| ! | GTATGAAGAAGTTTTCGTTA+GGG | + | chr3.3:86658842-86658861 | MS.gene42663:CDS | 30.0% |
| ! | TATTTTGCCTCTAAACCAAA+AGG | + | chr3.3:86661040-86661059 | MS.gene42663:CDS | 30.0% |
| ! | TCTCATTAGTTTCCTGTAAT+TGG | - | chr3.3:86662565-86662584 | None:intergenic | 30.0% |
| ! | TTTTCGTTACAGTGAAGAAA+TGG | + | chr3.3:86661273-86661292 | MS.gene42663:CDS | 30.0% |
| ! | TTTTCTAGACCGTTTCAAAA+AGG | - | chr3.3:86659899-86659918 | None:intergenic | 30.0% |
| !! | AGAAGAAAGCCTTTTTGAAA+CGG | + | chr3.3:86659887-86659906 | MS.gene42663:intron | 30.0% |
| !! | CAATGAGTTTTATCATGTGA+TGG | - | chr3.3:86660782-86660801 | None:intergenic | 30.0% |
| !! | GTAATTAATTTGTTTGCTGC+TGG | - | chr3.3:86659594-86659613 | None:intergenic | 30.0% |
| !!! | AGCATGTACAATCTTTTTTC+TGG | - | chr3.3:86659415-86659434 | None:intergenic | 30.0% |
| !!! | ATTTCAACCTTTTGGTTTAG+AGG | - | chr3.3:86661050-86661069 | None:intergenic | 30.0% |
| !!! | GATTGTAATAATTTTCGGGT+AGG | - | chr3.3:86660733-86660752 | None:intergenic | 30.0% |
| !!! | GCATGTACAATCTTTTTTCT+GGG | - | chr3.3:86659414-86659433 | None:intergenic | 30.0% |
| !!! | GTTACGCCTTTTAAAATGTT+TGG | + | chr3.3:86662695-86662714 | MS.gene42663:CDS | 30.0% |
| !!! | TTGTAATAATTTTCGGGTAG+GGG | - | chr3.3:86660731-86660750 | None:intergenic | 30.0% |
| AAAGGTAAAAAGAAGTCTCC+CGG | + | chr3.3:86663237-86663256 | MS.gene42663:CDS | 35.0% | |
| AAATCTGAGCGAAAAGTTGA+TGG | + | chr3.3:86659558-86659577 | MS.gene42663:CDS | 35.0% | |
| AACCAAAAGGTTGAAATAGC+TGG | + | chr3.3:86661053-86661072 | MS.gene42663:CDS | 35.0% | |
| AAGGTTGAAATAGCTGGTAT+TGG | + | chr3.3:86661059-86661078 | MS.gene42663:CDS | 35.0% | |
| AATGATTACTCGACTCAACT+AGG | - | chr3.3:86659118-86659137 | None:intergenic | 35.0% | |
| AGAAGGATTAGAAACCAGAA+AGG | + | chr3.3:86659519-86659538 | MS.gene42663:CDS | 35.0% | |
| AGATAGGGCAAAATTGGTAA+TGG | - | chr3.3:86660113-86660132 | None:intergenic | 35.0% | |
| ATACTCTTTGAACCTCCAAA+TGG | + | chr3.3:86661125-86661144 | MS.gene42663:CDS | 35.0% | |
| ATGTATCCATTCAACAACAG+GGG | - | chr3.3:86658805-86658824 | None:intergenic | 35.0% | |
| CAGAGTTCCAATTTGTACTT+TGG | + | chr3.3:86660885-86660904 | MS.gene42663:intron | 35.0% | |
| CATGTATCCATTCAACAACA+GGG | - | chr3.3:86658806-86658825 | None:intergenic | 35.0% | |
| CTAAACTACCTTTAGCTGTT+TGG | + | chr3.3:86660697-86660716 | MS.gene42663:intron | 35.0% | |
| CTTGAAGGATCTCTTAAACA+TGG | + | chr3.3:86659371-86659390 | MS.gene42663:intron | 35.0% | |
| CTTTCCATGATTGAATGACT+TGG | - | chr3.3:86660952-86660971 | None:intergenic | 35.0% | |
| GAGTTCAATTCATCTCATTC+TGG | + | chr3.3:86662420-86662439 | MS.gene42663:intron | 35.0% | |
| GATGCTTTCAAATACCTAAG+AGG | + | chr3.3:86660190-86660209 | MS.gene42663:CDS | 35.0% | |
| GCACATATCAAGTCAATATG+CGG | + | chr3.3:86662818-86662837 | MS.gene42663:CDS | 35.0% | |
| GTATGACTTTCCAAAACAAG+AGG | + | chr3.3:86662310-86662329 | MS.gene42663:intron | 35.0% | |
| TAATAAGGAGCTAAACACCT+GGG | - | chr3.3:86660850-86660869 | None:intergenic | 35.0% | |
| TAATTATGGAACCTGGACAA+TGG | - | chr3.3:86661106-86661125 | None:intergenic | 35.0% | |
| TAGGAGAGAAAGCAACTATA+AGG | - | chr3.3:86663200-86663219 | None:intergenic | 35.0% | |
| TATCTAGGCAGTACTTCATA+CGG | + | chr3.3:86661246-86661265 | MS.gene42663:intron | 35.0% | |
| TATGGTTGTGATAGAGAAAC+AGG | - | chr3.3:86662856-86662875 | None:intergenic | 35.0% | |
| TCACAGTGCAAGAAAATAGT+TGG | - | chr3.3:86661612-86661631 | None:intergenic | 35.0% | |
| TGGTAATACTGTCCAATTAC+AGG | + | chr3.3:86662550-86662569 | MS.gene42663:intron | 35.0% | |
| TTCAATCTGTGTCATCTTCT+CGG | + | chr3.3:86660282-86660301 | MS.gene42663:intron | 35.0% | |
| TTTCATTTCGTTCTACAGGA+GGG | - | chr3.3:86659662-86659681 | None:intergenic | 35.0% | |
| ! | ACATAAAAAGCACACACAAG+GGG | - | chr3.3:86662600-86662619 | None:intergenic | 35.0% |
| ! | ATTCCTTATTTCCGGAAAAG+GGG | + | chr3.3:86659955-86659974 | MS.gene42663:intron | 35.0% |
| ! | CATTGATCTTTTACAGCAAG+TGG | - | chr3.3:86659083-86659102 | None:intergenic | 35.0% |
| ! | CATTGCATAGCATCAGTTTT+AGG | + | chr3.3:86658932-86658951 | MS.gene42663:intron | 35.0% |
| ! | GATTCCTTATTTCCGGAAAA+GGG | + | chr3.3:86659954-86659973 | MS.gene42663:intron | 35.0% |
| ! | GTCAGTTCTAGTGAAACAAT+GGG | - | chr3.3:86661205-86661224 | None:intergenic | 35.0% |
| ! | TGATTCCTTATTTCCGGAAA+AGG | + | chr3.3:86659953-86659972 | MS.gene42663:intron | 35.0% |
| ! | TTGACTCGAGAAAACATGTT+TGG | - | chr3.3:86661555-86661574 | None:intergenic | 35.0% |
| !! | TACCAGCTATTTCAACCTTT+TGG | - | chr3.3:86661058-86661077 | None:intergenic | 35.0% |
| !! | TGTATTACAGCCTCTTGTTT+TGG | - | chr3.3:86662323-86662342 | None:intergenic | 35.0% |
| !! | TTCTGGTTTCTAATCCTTCT+AGG | - | chr3.3:86659519-86659538 | None:intergenic | 35.0% |
| !!! | ACAGTTTAGTTTTGGACAAG+TGG | + | chr3.3:86660565-86660584 | MS.gene42663:intron | 35.0% |
| !!! | TGCCCTATCTTTTTTTGATG+TGG | + | chr3.3:86660123-86660142 | MS.gene42663:intron | 35.0% |
| AAAACTCCCCTGTTGTTGAA+TGG | + | chr3.3:86658796-86658815 | MS.gene42663:CDS | 40.0% | |
| AACATGGGTATAACTGCACT+TGG | + | chr3.3:86659387-86659406 | MS.gene42663:CDS | 40.0% | |
| AAGCTGTAAAACTGCTTAGC+AGG | - | chr3.3:86663076-86663095 | None:intergenic | 40.0% | |
| AAGTTCAAGCGAGAAACATG+AGG | + | chr3.3:86659479-86659498 | MS.gene42663:CDS | 40.0% | |
| AGAAAAGTTTACCAGCTACC+TGG | + | chr3.3:86660006-86660025 | MS.gene42663:intron | 40.0% | |
| AGACAATTCGAAAGAGAGAG+TGG | + | chr3.3:86660610-86660629 | MS.gene42663:intron | 40.0% | |
| AGATTCGCGACATTCCTAAA+TGG | + | chr3.3:86659742-86659761 | MS.gene42663:CDS | 40.0% | |
| AGATTTGGCAGTTGTGTTTG+TGG | + | chr3.3:86662530-86662549 | MS.gene42663:intron | 40.0% | |
| ATATTCATGTTGCCCCTATG+TGG | + | chr3.3:86662769-86662788 | MS.gene42663:CDS | 40.0% | |
| ATCTAGGCAGTACTTCATAC+GGG | + | chr3.3:86661247-86661266 | MS.gene42663:intron | 40.0% | |
| ATTACTCGACTCAACTAGGT+TGG | - | chr3.3:86659114-86659133 | None:intergenic | 40.0% | |
| CACATGCAGAAACAGACTTA+CGG | - | chr3.3:86660255-86660274 | None:intergenic | 40.0% | |
| CATGTTGCAATTTGCCTTTC+TGG | - | chr3.3:86659536-86659555 | None:intergenic | 40.0% | |
| CCAAAGCAAACACTTGATAC+AGG | - | chr3.3:86661424-86661443 | None:intergenic | 40.0% | |
| CCAACAGCCAAAGTACAAAT+TGG | - | chr3.3:86660895-86660914 | None:intergenic | 40.0% | |
| CCAATTTGTACTTTGGCTGT+TGG | + | chr3.3:86660892-86660911 | MS.gene42663:intron | 40.0% | |
| CCATGTATCCATTCAACAAC+AGG | - | chr3.3:86658807-86658826 | None:intergenic | 40.0% | |
| CCTGTATCAAGTGTTTGCTT+TGG | + | chr3.3:86661421-86661440 | MS.gene42663:intron | 40.0% | |
| CCTGTTGTTGAATGGATACA+TGG | + | chr3.3:86658804-86658823 | MS.gene42663:CDS | 40.0% | |
| CTAATAAGGAGCTAAACACC+TGG | - | chr3.3:86660851-86660870 | None:intergenic | 40.0% | |
| CTCACCAAGTCATTCAATCA+TGG | + | chr3.3:86660945-86660964 | MS.gene42663:CDS | 40.0% | |
| CTCATTGGCAGCTATACAAT+TGG | + | chr3.3:86662395-86662414 | MS.gene42663:CDS | 40.0% | |
| CTTGTTCAGAATGCTACTCT+AGG | - | chr3.3:86659152-86659171 | None:intergenic | 40.0% | |
| CTTTGAACCTCCAAATGGTA+AGG | + | chr3.3:86661130-86661149 | MS.gene42663:CDS | 40.0% | |
| GAGAGACATTTCATGCAAAC+AGG | - | chr3.3:86659280-86659299 | None:intergenic | 40.0% | |
| GTCGTTTCATTTCGTTCTAC+AGG | - | chr3.3:86659666-86659685 | None:intergenic | 40.0% | |
| GTTGAATGGATACATGGTCT+CGG | + | chr3.3:86658810-86658829 | MS.gene42663:CDS | 40.0% | |
| GTTTCATTTCGTTCTACAGG+AGG | - | chr3.3:86659663-86659682 | None:intergenic | 40.0% | |
| TCAAAGTCAGACATGCACAT+TGG | - | chr3.3:86661805-86661824 | None:intergenic | 40.0% | |
| TCATATGTGGACTTACCTGT+GGG | - | chr3.3:86661363-86661382 | None:intergenic | 40.0% | |
| TGCCAATGAGAAAAAGAGTC+CGG | - | chr3.3:86662385-86662404 | None:intergenic | 40.0% | |
| TGGCAAACAATCCTTTACTG+CGG | + | chr3.3:86661293-86661312 | MS.gene42663:CDS | 40.0% | |
| TTCATATGTGGACTTACCTG+TGG | - | chr3.3:86661364-86661383 | None:intergenic | 40.0% | |
| TTCATTTCGTTCTACAGGAG+GGG | - | chr3.3:86659661-86659680 | None:intergenic | 40.0% | |
| TTGAATGGATACATGGTCTC+GGG | + | chr3.3:86658811-86658830 | MS.gene42663:CDS | 40.0% | |
| TTGATTGGGATACCTTGCAA+TGG | + | chr3.3:86658871-86658890 | MS.gene42663:CDS | 40.0% | |
| TTTCTCGCTTGAACTTGAAG+AGG | - | chr3.3:86659475-86659494 | None:intergenic | 40.0% | |
| ! | AAACCCCTTTTCCGGAAATA+AGG | - | chr3.3:86659961-86659980 | None:intergenic | 40.0% |
| ! | AAGCAGAAGCTTTTAATCCC+CGG | + | chr3.3:86662363-86662382 | MS.gene42663:CDS | 40.0% |
| ! | AATGCCTTGTTGGCTGATAA+AGG | + | chr3.3:86663027-86663046 | MS.gene42663:intron | 40.0% |
| ! | ATAGTTGCTTTCTCTCCTAC+TGG | + | chr3.3:86663201-86663220 | MS.gene42663:CDS | 40.0% |
| ! | ATGTTTGGAGTTTACAGAGG+AGG | + | chr3.3:86662710-86662729 | MS.gene42663:CDS | 40.0% |
| ! | CAACTGTTTGTTAGAGGCAT+TGG | + | chr3.3:86661572-86661591 | MS.gene42663:intron | 40.0% |
| ! | CGTTAGGGAAGAAGTTGATT+GGG | + | chr3.3:86658857-86658876 | MS.gene42663:CDS | 40.0% |
| ! | CTGCTGTCACATACACTTTT+TGG | - | chr3.3:86662671-86662690 | None:intergenic | 40.0% |
| ! | GCTGGTAAACTTTTCTTGAC+TGG | - | chr3.3:86660002-86660021 | None:intergenic | 40.0% |
| ! | GGTCAGTTCTAGTGAAACAA+TGG | - | chr3.3:86661206-86661225 | None:intergenic | 40.0% |
| ! | TCAACAACAGGGGAGTTTTT+CGG | - | chr3.3:86658795-86658814 | None:intergenic | 40.0% |
| ! | TCGAGTCAACTGTTTGTTAG+AGG | + | chr3.3:86661566-86661585 | MS.gene42663:intron | 40.0% |
| ! | TCGTTAGGGAAGAAGTTGAT+TGG | + | chr3.3:86658856-86658875 | MS.gene42663:CDS | 40.0% |
| ! | TTGCTTTGCTTCGTTGGTAA+AGG | + | chr3.3:86659301-86659320 | MS.gene42663:intron | 40.0% |
| !! | AGACACAGAAAGGCATTCAT+TGG | - | chr3.3:86660326-86660345 | None:intergenic | 40.0% |
| !! | GACACAGAAAGGCATTCATT+GGG | - | chr3.3:86660325-86660344 | None:intergenic | 40.0% |
| !! | TATCAGCCAACAAGGCATTT+TGG | - | chr3.3:86663026-86663045 | None:intergenic | 40.0% |
| !! | TGAGCGAAAAGTTGATGGAA+CGG | + | chr3.3:86659563-86659582 | MS.gene42663:CDS | 40.0% |
| AAAAGAAGTCTCCCGGAAGA+AGG | + | chr3.3:86663244-86663263 | MS.gene42663:CDS | 45.0% | |
| AAACAGACTTACGGTCCATG+TGG | - | chr3.3:86660246-86660265 | None:intergenic | 45.0% | |
| AACCTCCAAATGGTAAGGTG+AGG | + | chr3.3:86661135-86661154 | MS.gene42663:intron | 45.0% | |
| AACTGCTTAGCAGGTAAACC+AGG | - | chr3.3:86663067-86663086 | None:intergenic | 45.0% | |
| AAGCTTGCAAGTGTCCACAT+AGG | - | chr3.3:86662786-86662805 | None:intergenic | 45.0% | |
| AAGTTTACCAGCTACCTGGA+TGG | + | chr3.3:86660010-86660029 | MS.gene42663:intron | 45.0% | |
| ACGATGTGGGAGCTCAATTT+GGG | + | chr3.3:86658769-86658788 | MS.gene42663:CDS | 45.0% | |
| ACTGGTTGGACATTTGGCAA+AGG | + | chr3.3:86663219-86663238 | MS.gene42663:CDS | 45.0% | |
| ACTTGAAGAGGAGGTTCCTA+AGG | - | chr3.3:86659463-86659482 | None:intergenic | 45.0% | |
| AGCTTGCAAGTGTCCACATA+GGG | - | chr3.3:86662785-86662804 | None:intergenic | 45.0% | |
| AGTGGGAACAATCTCCTCTT+AGG | - | chr3.3:86660207-86660226 | None:intergenic | 45.0% | |
| ATAGGACATGTCCGCAGTAA+AGG | - | chr3.3:86661307-86661326 | None:intergenic | 45.0% | |
| CCAATGAGAAAAAGAGTCCG+GGG | - | chr3.3:86662383-86662402 | None:intergenic | 45.0% | |
| CCTAAATGGTGTGCCATACA+AGG | + | chr3.3:86659756-86659775 | MS.gene42663:CDS | 45.0% | |
| CCTTGTATGGCACACCATTT+AGG | - | chr3.3:86659759-86659778 | None:intergenic | 45.0% | |
| CGAAATGAAACGACCACAAG+TGG | + | chr3.3:86659672-86659691 | MS.gene42663:CDS | 45.0% | |
| CTCAGTTTGAATTGCCATCC+AGG | - | chr3.3:86660027-86660046 | None:intergenic | 45.0% | |
| CTCTCTTTGCTTTGCTTCGT+TGG | + | chr3.3:86659295-86659314 | MS.gene42663:intron | 45.0% | |
| CTTAGAAGAGGAATCGCCTT+AGG | + | chr3.3:86659444-86659463 | MS.gene42663:CDS | 45.0% | |
| GAAGTGTGTGAGAAACCAGT+GGG | - | chr3.3:86660224-86660243 | None:intergenic | 45.0% | |
| GCCAATGAGAAAAAGAGTCC+GGG | - | chr3.3:86662384-86662403 | None:intergenic | 45.0% | |
| GCTCTCTCAGAACTTAGAAG+AGG | + | chr3.3:86659432-86659451 | MS.gene42663:CDS | 45.0% | |
| GGATCCTTTATCAGCCAACA+AGG | - | chr3.3:86663034-86663053 | None:intergenic | 45.0% | |
| GTTTCTCACACACTTCCACA+TGG | + | chr3.3:86660228-86660247 | MS.gene42663:CDS | 45.0% | |
| TAAGAGGAGATTGTTCCCAC+TGG | + | chr3.3:86660206-86660225 | MS.gene42663:CDS | 45.0% | |
| TACAAGTCTGGCTGTAACAG+AGG | - | chr3.3:86660985-86661004 | None:intergenic | 45.0% | |
| TATGGAACCTGGACAATGGT+TGG | - | chr3.3:86661102-86661121 | None:intergenic | 45.0% | |
| TCCATGCCAAAATGCCTTGT+TGG | + | chr3.3:86663017-86663036 | MS.gene42663:intron | 45.0% | |
| TTACAGAGGAGGATATGCAG+TGG | + | chr3.3:86662721-86662740 | MS.gene42663:CDS | 45.0% | |
| TTGCCAAATGTCCAACCAGT+AGG | - | chr3.3:86663219-86663238 | None:intergenic | 45.0% | |
| TTGCTTTCTCTCCTACTGGT+TGG | + | chr3.3:86663205-86663224 | MS.gene42663:CDS | 45.0% | |
| TTTCACTAGAACTGACCAGC+TGG | + | chr3.3:86661209-86661228 | MS.gene42663:intron | 45.0% | |
| ! | ATGTTGCTTACCACTCGGAA+AGG | - | chr3.3:86659786-86659805 | None:intergenic | 45.0% |
| ! | CCACATGAAAACCCCTTTTC+CGG | - | chr3.3:86659969-86659988 | None:intergenic | 45.0% |
| ! | CGGAAAAGGGGTTTTCATGT+GGG | + | chr3.3:86659967-86659986 | MS.gene42663:intron | 45.0% |
| ! | TCTCCTACTGGTTGGACATT+TGG | + | chr3.3:86663213-86663232 | MS.gene42663:CDS | 45.0% |
| !! | TACCTTTAGCTGTTTGGTGC+CGG | + | chr3.3:86660703-86660722 | MS.gene42663:intron | 45.0% |
| !! | TCGGAAAGGTGTTCCTTGTA+TGG | - | chr3.3:86659772-86659791 | None:intergenic | 45.0% |
| !! | TGGTATTGGCGTGACTTGTT+TGG | + | chr3.3:86661073-86661092 | MS.gene42663:CDS | 45.0% |
| !!! | GGCAGAAACTTTTTTCCCAC+TGG | - | chr3.3:86659640-86659659 | None:intergenic | 45.0% |
| !! | ATATATATATATATATAGTT+TGG | + | chr3.3:86660386-86660405 | MS.gene42663:intron | 5.0% |
| AAGGATCCACAGTTGCTACC+TGG | + | chr3.3:86663046-86663065 | MS.gene42663:intron | 50.0% | |
| ACAAGGAACACCTTTCCGAG+TGG | + | chr3.3:86659773-86659792 | MS.gene42663:CDS | 50.0% | |
| AGACATGCACATTGGCACTC+TGG | - | chr3.3:86661797-86661816 | None:intergenic | 50.0% | |
| AGCCTCACCTTACCATTTGG+AGG | - | chr3.3:86661140-86661159 | None:intergenic | 50.0% | |
| ATGCTGAGGTTGAGCCTAGA+AGG | + | chr3.3:86659502-86659521 | MS.gene42663:CDS | 50.0% | |
| CCAAATGGTAAGGTGAGGCT+TGG | + | chr3.3:86661140-86661159 | MS.gene42663:intron | 50.0% | |
| CCAAGCCTCACCTTACCATT+TGG | - | chr3.3:86661143-86661162 | None:intergenic | 50.0% | |
| CGAGAAACATGAGGATGCTG+AGG | + | chr3.3:86659488-86659507 | MS.gene42663:CDS | 50.0% | |
| CTCGCTTGAACTTGAAGAGG+AGG | - | chr3.3:86659472-86659491 | None:intergenic | 50.0% | |
| CTCTTCTGTCAGCCATTGCA+AGG | - | chr3.3:86658886-86658905 | None:intergenic | 50.0% | |
| CTTGCAATGGCTGACAGAAG+AGG | + | chr3.3:86658884-86658903 | MS.gene42663:CDS | 50.0% | |
| GACGATGTGGGAGCTCAATT+TGG | + | chr3.3:86658768-86658787 | MS.gene42663:CDS | 50.0% | |
| GCTTGCAAGTGTCCACATAG+GGG | - | chr3.3:86662784-86662803 | None:intergenic | 50.0% | |
| GGTAAACCAGGTAGCAACTG+TGG | - | chr3.3:86663055-86663074 | None:intergenic | 50.0% | |
| GTGCCTCCTAATGACGATGT+GGG | + | chr3.3:86658756-86658775 | MS.gene42663:CDS | 50.0% | |
| TGAATTGCCATCCAGGTAGC+TGG | - | chr3.3:86660020-86660039 | None:intergenic | 50.0% | |
| TGAGCTCCCACATCGTCATT+AGG | - | chr3.3:86658765-86658784 | None:intergenic | 50.0% | |
| TGTGCCTCCTAATGACGATG+TGG | + | chr3.3:86658755-86658774 | MS.gene42663:CDS | 50.0% | |
| TTCCCACTGGTAGCAAATCC+CGG | - | chr3.3:86659627-86659646 | None:intergenic | 50.0% | |
| TTGGATGCCAACCATTGTCC+AGG | + | chr3.3:86661092-86661111 | MS.gene42663:CDS | 50.0% | |
| ! | CCCCGGACTCTTTTTCTCAT+TGG | + | chr3.3:86662380-86662399 | MS.gene42663:CDS | 50.0% |
| ! | CCGGAAAAGGGGTTTTCATG+TGG | + | chr3.3:86659966-86659985 | MS.gene42663:intron | 50.0% |
| ! | GGAAGTGTGTGAGAAACCAG+TGG | - | chr3.3:86660225-86660244 | None:intergenic | 50.0% |
| ! | TACCTGTGGGTTGCAGTATG+TGG | - | chr3.3:86661350-86661369 | None:intergenic | 50.0% |
| !! | GCCAACAAGGCATTTTGGCA+TGG | - | chr3.3:86663021-86663040 | None:intergenic | 50.0% |
| !! | TTCCGGGATTTGCTACCAGT+GGG | + | chr3.3:86659622-86659641 | MS.gene42663:CDS | 50.0% |
| !! | TTTCCGGGATTTGCTACCAG+TGG | + | chr3.3:86659621-86659640 | MS.gene42663:CDS | 50.0% |
| !!! | TAATTTTCGGGTAGGGGAGC+CGG | - | chr3.3:86660725-86660744 | None:intergenic | 50.0% |
| AGAAGTCTCCCGGAAGAAGG+TGG | + | chr3.3:86663247-86663266 | MS.gene42663:CDS | 55.0% | |
| AGAGTGGCAGTGCTGTGCAT+CGG | + | chr3.3:86660626-86660645 | MS.gene42663:intron | 55.0% | |
| AGCCGGCACCAAACAGCTAA+AGG | - | chr3.3:86660708-86660727 | None:intergenic | 55.0% | |
| CACCACATACTGCAACCCAC+AGG | + | chr3.3:86661345-86661364 | MS.gene42663:CDS | 55.0% | |
| GCTCCCACATCGTCATTAGG+AGG | - | chr3.3:86658762-86658781 | None:intergenic | 55.0% | |
| TCGATCAGACGAGCCACTTG+TGG | - | chr3.3:86659688-86659707 | None:intergenic | 55.0% | |
| ! | CGACTCAACTAGGTTGGCCA+TGG | - | chr3.3:86659108-86659127 | None:intergenic | 55.0% |
| ACCCTGCTGCCACCTTCTTC+CGG | - | chr3.3:86663259-86663278 | None:intergenic | 60.0% | |
| CCCGGAAGAAGGTGGCAGCA+GGG | + | chr3.3:86663255-86663274 | MS.gene42663:CDS | 65.0% | |
| CCCTGCTGCCACCTTCTTCC+GGG | - | chr3.3:86663258-86663277 | None:intergenic | 65.0% | |
| TCCCGGAAGAAGGTGGCAGC+AGG | + | chr3.3:86663254-86663273 | MS.gene42663:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86658753 | 86663289 | 86658753 | ID=MS.gene42663 |
| chr3.3 | mRNA | 86658753 | 86663289 | 86658753 | ID=MS.gene42663.t1;Parent=MS.gene42663 |
| chr3.3 | exon | 86658753 | 86658905 | 86658753 | ID=MS.gene42663.t1.exon1;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86658753 | 86658905 | 86658753 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| chr3.3 | exon | 86659378 | 86659794 | 86659378 | ID=MS.gene42663.t1.exon2;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86659378 | 86659794 | 86659378 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| chr3.3 | exon | 86660190 | 86660253 | 86660190 | ID=MS.gene42663.t1.exon3;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86660190 | 86660253 | 86660190 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| chr3.3 | exon | 86660934 | 86661151 | 86660934 | ID=MS.gene42663.t1.exon4;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86660934 | 86661151 | 86660934 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| chr3.3 | exon | 86661253 | 86661366 | 86661253 | ID=MS.gene42663.t1.exon5;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86661253 | 86661366 | 86661253 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| chr3.3 | exon | 86662311 | 86662416 | 86662311 | ID=MS.gene42663.t1.exon6;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86662311 | 86662416 | 86662311 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| chr3.3 | exon | 86662628 | 86662839 | 86662628 | ID=MS.gene42663.t1.exon7;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86662628 | 86662839 | 86662628 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| chr3.3 | exon | 86663186 | 86663289 | 86663186 | ID=MS.gene42663.t1.exon8;Parent=MS.gene42663.t1 |
| chr3.3 | CDS | 86663186 | 86663289 | 86663186 | ID=cds.MS.gene42663.t1;Parent=MS.gene42663.t1 |
| Gene Sequence |
| Protein sequence |
