AlfalfaGEDB | MS.gene43378

M. sativa cultivar XinJiangDaYe / MS.gene43378

KEGG: K01885
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005488 GO:0005524 GO:0005575 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0110165 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00749.24 PF03950.21 PF14497.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43378.t1	XP_003591273.1	90.7	740	60	1	3	742	5	735	0.00E+00	1352.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43378.t1	O82462	70.4	737	196	6	1	736	1	716	1.2e-308	1060.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43378.t1	G7IAE3	90.7	740	60	1	3	742	5	735	0.0e+00	1352.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003428	MS.gene43378	PPI
MS.gene00612	MS.gene43378	PPI
MS.gene020725	MS.gene43378	PPI
MS.gene030166	MS.gene43378	PPI
MS.gene034567	MS.gene43378	PPI
MS.gene034568	MS.gene43378	PPI
MS.gene042890	MS.gene43378	PPI
MS.gene046152	MS.gene43378	PPI
MS.gene047206	MS.gene43378	PPI
MS.gene052373	MS.gene43378	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43378.t1	MTR_1g085150	90.431	742	62	1	1	742	3	735	0.0	1389
MS.gene43378.t1	MTR_1g110430	34.442	511	309	10	223	717	269	769	1.07e-71	249
MS.gene43378.t1	MTR_8g009900	26.906	223	132	7	225	426	55	267	1.37e-11	68.2
MS.gene43378.t1	MTR_8g009900	36.275	102	56	2	225	317	55	156	2.41e-11	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43378.t1	AT5G26710	70.421	737	196	6	1	736	1	716	0.0	1089
MS.gene43378.t1	AT1G25350	32.314	523	305	10	223	717	269	770	8.29e-70	244
MS.gene43378.t1	AT1G25350	30.492	528	313	11	223	717	269	775	6.45e-61	219
MS.gene43378.t1	AT5G64050	25.188	266	154	8	213	455	42	285	2.61e-12	70.5

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Find 158 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCAGCCAGTCGTCA+AGG	0.611058	1.4:-32618087	MS.gene43378:CDS
AAAATCTCAATCTCATGGAA+TGG	0.472161	1.4:-32616968	MS.gene43378:CDS
AAAATTAATTAGCCAGGGTA+AGG	0.515011	1.4:-32617715	MS.gene43378:CDS
AAATCTCAATCTCATGGAAT+GGG	0.463289	1.4:-32616967	MS.gene43378:CDS
AAATGATTGCAGGATCAGAG+AGG	0.689019	1.4:-32617584	MS.gene43378:CDS
AACGATAATAAACAGGATCA+CGG	0.648773	1.4:+32617505	None:intergenic
AACGCAAAATAACCTGACCT+TGG	0.577499	1.4:+32617874	None:intergenic
AAGCTACCACATATACAAAA+AGG	0.360107	1.4:-32616782	MS.gene43378:CDS
AAGGTATCACTCATGCCCTT+CGG	0.524399	1.4:-32617395	MS.gene43378:CDS
AAGTAGATAAGGACCAAGAT+GGG	0.560937	1.4:-32616674	MS.gene43378:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGAGATTCTAGCATA+TGG	-	chr1.4:32619757-32619776	MS.gene43378:intron	30.0%
AAAATCTCAATCTCATGGAA+TGG	-	chr1.4:32618852-32618871	MS.gene43378:intron	30.0%
AAAATTAATTAGCCAGGGTA+AGG	-	chr1.4:32618105-32618124	MS.gene43378:CDS	30.0%
AAAGCACAATAAGGAATACT+AGG	-	chr1.4:32616473-32616492	MS.gene43378:intron	30.0%
AAATCTCAATCTCATGGAAT+GGG	-	chr1.4:32618853-32618872	MS.gene43378:intron	30.0%
AACAAAAGAAAAAGGAGAGA+AGG	-	chr1.4:32618152-32618171	MS.gene43378:CDS	30.0%
AACGATAATAAACAGGATCA+CGG	+	chr1.4:32618318-32618337	None:intergenic	30.0%
AAGCACAATAAGGAATACTA+GGG	-	chr1.4:32616474-32616493	MS.gene43378:intron	30.0%
AAGCTACCACATATACAAAA+AGG	-	chr1.4:32619038-32619057	MS.gene43378:intron	30.0%
AATAGGAGAGTGATAGTTTA+AGG	-	chr1.4:32617045-32617064	MS.gene43378:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	32615912	32619930	32615912	ID=MS.gene43378
chr1.4	mRNA	32615912	32619930	32615912	ID=MS.gene43378.t1;Parent=MS.gene43378
chr1.4	exon	32619791	32619930	32619791	ID=MS.gene43378.t1.exon1;Parent=MS.gene43378.t1
chr1.4	CDS	32619791	32619930	32619791	ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4	exon	32619615	32619711	32619615	ID=MS.gene43378.t1.exon2;Parent=MS.gene43378.t1
chr1.4	CDS	32619615	32619711	32619615	ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4	exon	32618432	32618585	32618432	ID=MS.gene43378.t1.exon3;Parent=MS.gene43378.t1
chr1.4	CDS	32618432	32618585	32618432	ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4	exon	32617146	32618269	32617146	ID=MS.gene43378.t1.exon4;Parent=MS.gene43378.t1
chr1.4	CDS	32617146	32618269	32617146	ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4	exon	32616533	32617000	32616533	ID=MS.gene43378.t1.exon5;Parent=MS.gene43378.t1
chr1.4	CDS	32616533	32617000	32616533	ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4	exon	32615912	32616157	32615912	ID=MS.gene43378.t1.exon6;Parent=MS.gene43378.t1
chr1.4	CDS	32615912	32616157	32615912	ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1

Gene Sequence

>MS.gene43378

ATGGATATCAAAACCCTTTCTTTCCCTGCCGCCACGCCACCGTTAGCGGTAATCGCTGCATCCAAGCTCGTCGGATTTTCTTCATCCATTGACACCTCCCTTCCTCCTGATTCCGCCCCCACATTTCTCTTCTCCAACGGGTACGTTCCCTTTCTCATATCTCTTCACCCTTTTCCTCGTTTCTATGATCTATCAATAATTTGCAATTATTCGTAACAGGTCGAAATTGCGTGGACCATTTGTTCTTCTGCGTTACATTGGAAGAACTGCAACTCTTCCTAATTTCTATGGCCAAAATGTTTTTCAAACTAGCCAGGTTATTTTTTATGATATATAATAGCATAAGATGTTTTAGTGAAATTATTGTTCACATTGAATAAGTGATGTTGTCTTTTAAGGCCCTGTTTGGTTAAACAACTTATTTGCAGCTTATAGCACAAGCACTTATCATGATAAACACTTACGTATTAGGGTCTGTTTGGTTAGACATAATTTTGAGTTTATAGCTTGGTATTATAAGTTAGTTTATAAGCTCTTTCTACAACAAAAGTGTACTTGCAAAAAGCACAATAAGGAATACTAGGGTTTAGTATCGTATTCTAGGGTTTAGACTGATTATTGGATGCCTTGAGATTGCTCCCAAGGGTGGTATTTATAGCCTTTTATGGGCCTGCAGGTGTGTGGTTACTTAGGCAGCAAGTAATAGGGGTGTTTTGGGTATTTAGGCGCGTTCTAGAGGGTTCTAGAAGCGAACAAAGGCGGTGTCTTGAGGGAAACGCGCCTTTGAGCCTTATGGCCCTTCTGGAGGGCGCTGAGGTCTCTGGGAGGGTCTAAAAGCCCTTTTGGAGGTCTTAGGTCTTTAGGAATATATTGACGGTTCAAAAAGATAAAATGTAGTTAAATTGTTTTCATAAGATAACTTGGAGAACGTATGAAGATAAGCTAAGCTGTTAAAAGCTTATGAAAAATTTCATGAGCTTTTTTCATAAGTTCTTCCAAACAAGCAGTAAATATTGCTTGAGTGAACCTTCAGTTTGGGTCCCACTTTCTCTCCTATTGGGTCCTTGAACTACAGAAATATCATAACCAGTCTTGAAACTATTCTCGATAGTTAGTCCTTTGGTTTCTTTCAAAATAGGAGAGTGATAGTTTAAGGTCCCAAATTGATTGATTGATTGACAATAGTTTAGGGTTTGTTAATTAGAATTCTATAGTTCAGAGACCAAGTTCGAGGGTGAGTGATTGTTTAGGGATCAAATTGAAGGCTTGCTCGCTTTTCTTTTGTTAGTTGTTGTTTGCTTCTGGTTGTTAGCTCCGTCATTCAATTGTTTCTTTGACTTTTCAGATTGATGAATTGCTAGAGTATGCACATGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTAATACATTATCAATCGCAGATCTAGCTATCTGGGCAGGTCTTGCAGGTAAATATATTTTTATGATACCTATACCTATTCATCTTCACCTGTGATACTACTACTACTAAATCTCTTTTAAACAACCTTGTTTAGTGATTGTTTCTCTTCAACCTTAATCTATGAAACTTGATGGTTCATGTCATCTCCATCTACACTATGCCTTTTCAGGTGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCATTAATGGCAGAACATGGTACTACATTAAATGAAGTCACATCAACATATATTGGCAAAAAAGGATCGGGAGAGCCATCTGCAACCAAGCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTGAAGAATGTGAATGGGGATTTTTCTGATAACATTAAGGGAGGAGGCAAGCCTTCGGTAGAGATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCATATTGGACACGCAAAAGCAGCTCTGTTGAACAAGCATTTTGCTGAGCGATACCAAGGTCAGGTTATTTTGCGTTTTGATGATACAAATCCTGAGAAAGAAAAAAAAGAATTTGTGGACAATTTGATAAAAGATGTTGAGATGTTGGGTGTCAAATATGAAAAAATTACATATACATCAGATTACTTCCCTGAGTTGATGGAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCATATGTTGATGACACTCCACGTGAACAAAAGAAAAAGGAGAGAAGGGCTGGCATAGAATCTAAATGCAGAAACCATAGTATAGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCTCGCAGTGTTATGTTCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAAACCAATGCCTCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCCTGTCCATTTGTTGATGCTCGTGAAGGTATCACTCATGCCCTTCGGTCAAGTGAATACCATGATCGTAATGCTCAGTATCACAGGATTCAAGAGGACATGGGAGTTAAGCAAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTTCATGGTTTGTTAAAAATAAAAAAGTTGAATCATGGGATGATCCACGATTTCCTACAGTGCAAGGAATTGTTCGTAGAGGCTTGAAAATTGAAGCGCTAATCCAATTTATTTTTGAACAAGTATGTACAAGGTTTTGCTTTCTTTTATACATCTAAAAGAAAATATGCACTTGAATATAGCGTTTAGTTGTCATACTCTTTTCTTCTTTTTTACTTTTTTTGTTTTATATCCATGCTTAAAATGTTGATCACTGTTCTTGTACAGGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTATGGACGATCAATAAAAAAATTATTGACCCTGTATGTCCCAGACACACTGCGGTCATTGCGGATAAACGTGTATTGTTAACCCTCACTGATGGTCCTGAGAAATCATTTGTCCGCATCATACCTAGGCACAAAAAGTATGAAGCTGCTGGGAATAAAGCTACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCTGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAGTAGATAAGGACCAAGATGGGAATGTCACAGGGTTAAGTGGTGTTTTACATCTTGAAGGATCTGTGAAGACCACAAAACTGAAGCTTACTTGGCTACCTGAGTTAGATGAACTAGTTAGCCTGACATTGATGGAGTTTGATTACCTCATTACGAAGAAAAAGGTATGTGCATGGCTTCTGTTTGTTTCTGTCATTAATAAAGGAAAATATATAATATGTGAACATTTCCACGAGCAATTCACGTGTCCATACGATTTCTACTGACACAACCAATCATGAACCTTTCATGAACCTTCCATATATGTTATAAGAATTTGTTAACGGCTATTATCTGACCTTTCATGAACCTTCCATGGAACTAGTTTTATAGCACCATATTGTCCTTATTATTGTCCATCCTGATCGCATTCTCTTAAAAGTGCATACCCTATGCATAGGCACTTTGGTTCAGTGTTCATTTCATCTACTCATACTTAATATACATCAAATCAAACCTGCTTTCTTCCCTGTTTAAGTTTTTATTTGCTTTGTTTGCAGCTTGAGAAAGGAAAGAATGGGAAAGAAGAGAATATCGATGATGTGCTTAACCCTGTGCTTAACCCTTGCACAAAAAAGGAGATTCTAGCATATGGAGAATCCAATATGCGAAATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCGTCCGGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA

Protein sequence

>MS.gene43378.t1

MDIKTLSFPAATPPLAVIAASKLVGFSSSIDTSLPPDSAPTFLFSNGSKLRGPFVLLRYIGRTATLPNFYGQNVFQTSQIDELLEYAHVLSSGPAFENGCKYIDDYLEKRTFLVGNTLSIADLAIWAGLAGAGKRWESLRKSKKYQNLARWYNSLMAEHGTTLNEVTSTYIGKKGSGEPSATKPKDQPVVKDKVKNVNGDFSDNIKGGGKPSVEIDLPDAEVGKVRLRFAPEPSGYLHIGHAKAALLNKHFAERYQGQVILRFDDTNPEKEKKEFVDNLIKDVEMLGVKYEKITYTSDYFPELMELAEKLISQGKAYVDDTPREQKKKERRAGIESKCRNHSIEENLKLWKEMIAGSERGSQCYVRGKLDMQDPNKSLRDPVYYRCKPMPHHRIGSKYKVYPTYDFACPFVDAREGITHALRSSEYHDRNAQYHRIQEDMGVKQVLIYEFSRLNMVYTLLSKRKLSWFVKNKKVESWDDPRFPTVQGIVRRGLKIEALIQFIFEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADKRVLLTLTDGPEKSFVRIIPRHKKYEAAGNKATTYTKRIWIDYADAESVSAGEEVTLMDWGNAIVKEVDKDQDGNVTGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYLITKKKLEKGKNGKEENIDDVLNPVLNPCTKKEILAYGESNMRNLKRGEVLQLERKGYFRCDVPFVRPSKPIVLFAIPDGRQQTSLK