AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43378

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43378.t1 MTR_1g085150 90.431 742 62 1 1 742 3 735 0.0 1389
MS.gene43378.t1 MTR_1g110430 34.442 511 309 10 223 717 269 769 1.07e-71 249
MS.gene43378.t1 MTR_8g009900 26.906 223 132 7 225 426 55 267 1.37e-11 68.2
MS.gene43378.t1 MTR_8g009900 36.275 102 56 2 225 317 55 156 2.41e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43378.t1 AT5G26710 70.421 737 196 6 1 736 1 716 0.0 1089
MS.gene43378.t1 AT1G25350 32.314 523 305 10 223 717 269 770 8.29e-70 244
MS.gene43378.t1 AT1G25350 30.492 528 313 11 223 717 269 775 6.45e-61 219
MS.gene43378.t1 AT5G64050 25.188 266 154 8 213 455 42 285 2.61e-12 70.5

Find 158 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGGAGAATTTGAAATTA+TGG 0.211763 1.4:-32617611 MS.gene43378:CDS
TTGACGACTGGCTGGTCTTT+TGG 0.223662 1.4:+32618089 None:intergenic
CGCAATGACCGCAGTGTGTC+TGG 0.261894 1.4:+32616899 None:intergenic
CAATCGCAGATCTAGCTATC+TGG 0.266430 1.4:-32618445 MS.gene43378:CDS
CTTATCTACTTCCTTTACTA+TGG 0.287844 1.4:+32616686 None:intergenic
TCAAATTCTCCTCTATACTA+TGG 0.289207 1.4:+32617619 None:intergenic
GCAACTCTTCCTAATTTCTA+TGG 0.300296 1.4:-32619640 MS.gene43378:CDS
ACGATGGTACAATTCATTAA+TGG 0.307383 1.4:-32618192 MS.gene43378:CDS
ACGCTTAAGATTTCGCATAT+TGG 0.307983 1.4:+32616035 None:intergenic
TTACCTCATTACGAAGAAAA+AGG 0.308169 1.4:-32616532 MS.gene43378:intron
TCAGCAAACGAAAGCTTTCA+TGG 0.309082 1.4:-32617260 MS.gene43378:CDS
GCTATCTGGGCAGGTCTTGC+AGG 0.316994 1.4:-32618431 MS.gene43378:intron
CGAATTTAGCCGGTTGAATA+TGG 0.317857 1.4:-32617295 MS.gene43378:CDS
AGATTACTTCCCTGAGTTGA+TGG 0.323642 1.4:-32617748 MS.gene43378:CDS
TGGAGAGAAAGGGATATTTC+AGG 0.324909 1.4:-32615996 MS.gene43378:CDS
TCCACGTGAACAAAAGAAAA+AGG 0.338569 1.4:-32617676 MS.gene43378:CDS
GATGTCTGCTGCCTGCCATC+TGG 0.343011 1.4:+32615922 None:intergenic
TGAAGATAGCCACTGGGTTC+AGG 0.349425 1.4:+32617948 None:intergenic
GAAGTCACATCAACATATAT+TGG 0.353025 1.4:-32618146 MS.gene43378:CDS
CCCAGTGGCTATCTTCATAT+TGG 0.358754 1.4:-32617942 MS.gene43378:CDS
AAGCTACCACATATACAAAA+AGG 0.360107 1.4:-32616782 MS.gene43378:CDS
CCACAAAACTGAAGCTTACT+TGG 0.363966 1.4:-32616602 MS.gene43378:CDS
CCAATGCCTCATCATAGAAT+TGG 0.367532 1.4:-32617477 MS.gene43378:CDS
ACCCTGTGACATTCCCATCT+TGG 0.408163 1.4:+32616661 None:intergenic
TGCCGCCACGCCACCGTTAG+CGG 0.413074 1.4:-32619882 MS.gene43378:CDS
GCTAACGGTGGCGTGGCGGC+AGG 0.413815 1.4:+32619884 None:intergenic
GGAAGTAACCTTGATGGATT+GGG 0.417880 1.4:-32616715 MS.gene43378:CDS
AGTATTGCAGCTGGAGAGAA+AGG 0.419290 1.4:-32616007 MS.gene43378:CDS
AGTTGGATACACTTTATACT+TGG 0.420137 1.4:+32617452 None:intergenic
ACACGATTGGTTTCGAAGGC+CGG 0.426191 1.4:+32615956 None:intergenic
GGATCACGGAGTGATTTGTT+TGG 0.426882 1.4:+32617519 None:intergenic
ACTAGTTAGCCTGACATTGA+TGG 0.433753 1.4:-32616562 MS.gene43378:CDS
CTTTGTTTGCAGCTTGAGAA+AGG 0.435061 1.4:-32616147 MS.gene43378:intron
GCGTGGCGGCAGGGAAAGAA+AGG 0.436316 1.4:+32619894 None:intergenic
GGTTTGCAACGATAATAAAC+AGG 0.437108 1.4:+32617498 None:intergenic
AGGAAGTAACCTTGATGGAT+TGG 0.439791 1.4:-32616716 MS.gene43378:CDS
CCACATTTCTCTTCTCCAAC+GGG 0.442745 1.4:-32619790 MS.gene43378:intron
GATAAAAGATGTTGAGATGT+TGG 0.447522 1.4:-32617802 MS.gene43378:CDS
CTTCCCTGAGTTGATGGAAC+TGG 0.453446 1.4:-32617742 MS.gene43378:CDS
CAGCTTGAGAAAGGAAAGAA+TGG 0.456822 1.4:-32616138 MS.gene43378:CDS
TTATGGAAGGAAATGATTGC+AGG 0.457763 1.4:-32617594 MS.gene43378:CDS
AAATCTCAATCTCATGGAAT+GGG 0.463289 1.4:-32616967 MS.gene43378:CDS
CAAGTATATTGATGACTACT+TGG 0.468006 1.4:-32618501 MS.gene43378:CDS
AGGAGGAAGGGAGGTGTCAA+TGG 0.471796 1.4:+32619823 None:intergenic
AAAATCTCAATCTCATGGAA+TGG 0.472161 1.4:-32616968 MS.gene43378:CDS
GATAAAGTGAAGAATGTGAA+TGG 0.472243 1.4:-32618065 MS.gene43378:CDS
ATAAAGTGAAGAATGTGAAT+GGG 0.472454 1.4:-32618064 MS.gene43378:CDS
TTCTCATCTACGAATTTAGC+CGG 0.474652 1.4:-32617305 MS.gene43378:CDS
GTGTTATGTTCGTGGGAAGT+TGG 0.474831 1.4:-32617553 MS.gene43378:CDS
TCCAATATGAAGATAGCCAC+TGG 0.476082 1.4:+32617941 None:intergenic
CCAATTCTATGATGAGGCAT+TGG 0.476980 1.4:+32617477 None:intergenic
TGAAGAAAATCCGACGAGCT+TGG 0.477069 1.4:+32619847 None:intergenic
GCAGTGTGTCTGGGACATAC+AGG 0.479972 1.4:+32616909 None:intergenic
TCATGGAATGGGACAAGCTA+TGG 0.483068 1.4:-32616956 MS.gene43378:CDS
ATAAAAGATGTTGAGATGTT+GGG 0.483694 1.4:-32617801 MS.gene43378:CDS
ATGTCTGCTGCCTGCCATCT+GGG 0.485977 1.4:+32615923 None:intergenic
GGCTCGCAGTGTTATGTTCG+TGG 0.486110 1.4:-32617561 MS.gene43378:CDS
GGCGGAATCAGGAGGAAGGG+AGG 0.488649 1.4:+32619814 None:intergenic
CCCACATTTCTCTTCTCCAA+CGG 0.489052 1.4:-32619791 MS.gene43378:CDS
CATAGTAAAGGAAGTAGATA+AGG 0.490754 1.4:-32616685 MS.gene43378:CDS
TGCTGAGCGATACCAAGGTC+AGG 0.492981 1.4:-32617886 MS.gene43378:CDS
GACCAAGATGGGAATGTCAC+AGG 0.497471 1.4:-32616663 MS.gene43378:CDS
GGACAGGCAAAATCATAAGT+TGG 0.503923 1.4:+32617435 None:intergenic
GAGTGTAGACCATATTCAAC+CGG 0.504461 1.4:+32617286 None:intergenic
GATACTGAGCATTACGATCA+TGG 0.505401 1.4:+32617361 None:intergenic
GGGATTGCAAATAACACGAT+TGG 0.508386 1.4:+32615943 None:intergenic
ATGCGGACAAATGATTTCTC+AGG 0.508905 1.4:+32616843 None:intergenic
TTCACTTTATCCTTGACGAC+TGG 0.509750 1.4:+32618077 None:intergenic
TTTCAGGTGCTGGAAAGAGA+TGG 0.510988 1.4:-32618253 MS.gene43378:intron
AATCAAACTCCATCAATGTC+AGG 0.511094 1.4:+32616553 None:intergenic
TCAGCCAGTTCCATCAACTC+AGG 0.512208 1.4:+32617738 None:intergenic
TCTGATAACATTAAGGGAGG+AGG 0.512500 1.4:-32618035 MS.gene43378:CDS
TATGCACATGTACTCTCATC+AGG 0.512531 1.4:-32618545 MS.gene43378:CDS
CTTTATCCTTGACGACTGGC+TGG 0.513178 1.4:+32618081 None:intergenic
TTTGTGCAAGGGTTAAGCAC+AGG 0.513222 1.4:+32616084 None:intergenic
GATCTTCCAGATGCTGAAGT+TGG 0.514176 1.4:-32617993 MS.gene43378:CDS
AAAATTAATTAGCCAGGGTA+AGG 0.515011 1.4:-32617715 MS.gene43378:CDS
GGCATTTCCCCAATCCATCA+AGG 0.517350 1.4:+32616707 None:intergenic
CCTTCACGAGCATCAACAAA+TGG 0.521928 1.4:+32617414 None:intergenic
AAGGTATCACTCATGCCCTT+CGG 0.524399 1.4:-32617395 MS.gene43378:CDS
AATCGCAGATCTAGCTATCT+GGG 0.526585 1.4:-32618444 MS.gene43378:CDS
ATGCAGAAACCATAGTATAG+AGG 0.528118 1.4:-32617628 MS.gene43378:CDS
TTCAGGTGCTGGAAAGAGAT+GGG 0.528173 1.4:-32618252 MS.gene43378:intron
GGTGTGATGTACCCTTCGTC+CGG 0.530625 1.4:-32615975 MS.gene43378:CDS
ATCGTAATGCTCAGTATCAC+AGG 0.530899 1.4:-32617356 MS.gene43378:CDS
CGAACAATTCCTTGCACTGT+AGG 0.532211 1.4:+32617192 None:intergenic
GACGCAGAGTCTGTATCAGC+AGG 0.532308 1.4:-32616741 MS.gene43378:CDS
ATGTAACGCAGAAGAACAAA+TGG 0.533432 1.4:+32619673 None:intergenic
GAAGTAGATAAGGACCAAGA+TGG 0.533557 1.4:-32616675 MS.gene43378:CDS
GGAGAATTTGAAATTATGGA+AGG 0.534607 1.4:-32617607 MS.gene43378:CDS
GCGTGGAGAAGTATTGCAGC+TGG 0.537955 1.4:-32616016 MS.gene43378:CDS
GGGAATGTCACAGGGTTAAG+TGG 0.540528 1.4:-32616654 MS.gene43378:CDS
CAGCCAGTTCCATCAACTCA+GGG 0.544119 1.4:+32617739 None:intergenic
TTTGTTCTTCTGCGTTACAT+TGG 0.545230 1.4:-32619670 MS.gene43378:CDS
AGGTGAGGAAGTAACCTTGA+TGG 0.551874 1.4:-32616721 MS.gene43378:CDS
TATTTGCAATCCCAGATGGC+AGG 0.556570 1.4:-32615933 MS.gene43378:CDS
GTGTTATTTGCAATCCCAGA+TGG 0.560737 1.4:-32615937 MS.gene43378:CDS
AAGTAGATAAGGACCAAGAT+GGG 0.560937 1.4:-32616674 MS.gene43378:CDS
GCAATGACCGCAGTGTGTCT+GGG 0.562664 1.4:+32616900 None:intergenic
CCGTTGGAGAAGAGAAATGT+GGG 0.567490 1.4:+32619791 None:intergenic
ACGAGCATCAACAAATGGAC+AGG 0.568037 1.4:+32617419 None:intergenic
GCAGATCTAGCTATCTGGGC+AGG 0.571047 1.4:-32618440 MS.gene43378:CDS
GCTCGCAGTGTTATGTTCGT+GGG 0.573045 1.4:-32617560 MS.gene43378:CDS
CTAACTAGTTCATCTAACTC+AGG 0.576697 1.4:+32616576 None:intergenic
AACGCAAAATAACCTGACCT+TGG 0.577499 1.4:+32617874 None:intergenic
TTGGGGAAATGCCATAGTAA+AGG 0.578640 1.4:-32616697 MS.gene43378:CDS
TCACAGGATTCAAGAGGACA+TGG 0.578665 1.4:-32617340 MS.gene43378:CDS
TAAGGGAGGAGGCAAGCCTT+CGG 0.582006 1.4:-32618024 MS.gene43378:CDS
CTAACGGTGGCGTGGCGGCA+GGG 0.582478 1.4:+32619885 None:intergenic
CCACGATTTCCTACAGTGCA+AGG 0.583620 1.4:-32617201 MS.gene43378:CDS
AGCTTGAGAAAGGAAAGAAT+GGG 0.586130 1.4:-32616137 MS.gene43378:CDS
GGTTTCGAAGGCCGGACGAA+GGG 0.590280 1.4:+32615964 None:intergenic
ATGGTATTCACTTGACCGAA+GGG 0.592206 1.4:+32617380 None:intergenic
CGTGGCGGCAGGGAAAGAAA+GGG 0.592278 1.4:+32619895 None:intergenic
CCTTGCACTGTAGGAAATCG+TGG 0.592445 1.4:+32617201 None:intergenic
AGAGTCTGTATCAGCAGGTG+AGG 0.595755 1.4:-32616736 MS.gene43378:CDS
AATAACACGATTGGTTTCGA+AGG 0.600160 1.4:+32615952 None:intergenic
AATGATTGCAGGATCAGAGA+GGG 0.601106 1.4:-32617583 MS.gene43378:CDS
GAAAGAGATGGGAAAGCTTG+AGG 0.602516 1.4:-32618241 MS.gene43378:CDS
TTGTGCAAGGGTTAAGCACA+GGG 0.603914 1.4:+32616085 None:intergenic
CATTTGTCCGCATCATACCT+AGG 0.604356 1.4:-32616833 MS.gene43378:CDS
CCCGTTGGAGAAGAGAAATG+TGG 0.604923 1.4:+32619790 None:intergenic
TACCGCTAACGGTGGCGTGG+CGG 0.610856 1.4:+32619880 None:intergenic
AAAAGACCAGCCAGTCGTCA+AGG 0.611058 1.4:-32618087 MS.gene43378:CDS
CCATTTGTTGATGCTCGTGA+AGG 0.612122 1.4:-32617414 MS.gene43378:CDS
TTGGATCCAATTCTATGATG+AGG 0.614189 1.4:+32617471 None:intergenic
CATGGTATTCACTTGACCGA+AGG 0.616177 1.4:+32617379 None:intergenic
CAGTGTGTCTGGGACATACA+GGG 0.618476 1.4:+32616910 None:intergenic
TAAAGTGAAGAATGTGAATG+GGG 0.619059 1.4:-32618063 MS.gene43378:CDS
GTATTGCAGCTGGAGAGAAA+GGG 0.620537 1.4:-32616006 MS.gene43378:CDS
CCAATATGAAGATAGCCACT+GGG 0.621615 1.4:+32617942 None:intergenic
GATTACCGCTAACGGTGGCG+TGG 0.623822 1.4:+32619877 None:intergenic
TGGTTTCGAAGGCCGGACGA+AGG 0.632020 1.4:+32615963 None:intergenic
GTATTGTTAACCCTCACTGA+TGG 0.633663 1.4:-32616867 MS.gene43378:CDS
ATCGCTGCATCCAAGCTCGT+CGG 0.637486 1.4:-32619857 MS.gene43378:CDS
CGTAACAGGTCGAAATTGCG+TGG 0.638158 1.4:-32619697 MS.gene43378:intron
AATTCATTAATGGCAGAACA+TGG 0.639138 1.4:-32618182 MS.gene43378:CDS
ACCAAGATGGGAATGTCACA+GGG 0.639741 1.4:-32616662 MS.gene43378:CDS
GTGCAAGGAATTGTTCGTAG+AGG 0.646627 1.4:-32617186 MS.gene43378:CDS
AACGATAATAAACAGGATCA+CGG 0.648773 1.4:+32617505 None:intergenic
CGATTTGCACCTGAACCCAG+TGG 0.648921 1.4:-32617957 MS.gene43378:CDS
AATATGCGAAATCTTAAGCG+TGG 0.649648 1.4:-32616033 MS.gene43378:CDS
GGAAGATCTATCTCTACCGA+AGG 0.650542 1.4:+32618008 None:intergenic
TTTCTCAGGACCATCAGTGA+GGG 0.655675 1.4:+32616857 None:intergenic
GAAGTAACCTTGATGGATTG+GGG 0.667338 1.4:-32616714 MS.gene43378:CDS
TCAGTATCACAGGATTCAAG+AGG 0.673861 1.4:-32617346 MS.gene43378:CDS
CAGACACACTGCGGTCATTG+CGG 0.674648 1.4:-32616898 MS.gene43378:CDS
ATTTCTCAGGACCATCAGTG+AGG 0.679162 1.4:+32616856 None:intergenic
AATATCAAAATCTTGCACGA+TGG 0.684460 1.4:-32618208 MS.gene43378:CDS
CACAGGATTCAAGAGGACAT+GGG 0.686727 1.4:-32617339 MS.gene43378:CDS
CATCAACATATGCCTTACCC+TGG 0.687143 1.4:+32617703 None:intergenic
AAATGATTGCAGGATCAGAG+AGG 0.689019 1.4:-32617584 MS.gene43378:CDS
GCAGCGATTACCGCTAACGG+TGG 0.690195 1.4:+32619872 None:intergenic
GATGCAGCGATTACCGCTAA+CGG 0.696017 1.4:+32619869 None:intergenic
ATGATTGCAGGATCAGAGAG+GGG 0.699155 1.4:-32617582 MS.gene43378:CDS
GTTGGAGAAGAGAAATGTGG+GGG 0.702868 1.4:+32619793 None:intergenic
CGTTGGAGAAGAGAAATGTG+GGG 0.703973 1.4:+32619792 None:intergenic
TGTATGTCCCAGACACACTG+CGG 0.755590 1.4:-32616907 MS.gene43378:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAGTTGAATCA+TGG - chr1.4:32618590-32618609 MS.gene43378:intron 15.0%
!! AAATAAAAAAGTTGAATCAT+GGG - chr1.4:32618591-32618610 MS.gene43378:intron 15.0%
!! ACAAATTCTTATAACATATA+TGG + chr1.4:32619446-32619465 None:intergenic 15.0%
!! ATACTTGTTCAAAAATAAAT+TGG + chr1.4:32618681-32618700 None:intergenic 15.0%
!! ATATATCATAAAAAATAACC+TGG + chr1.4:32616227-32616246 None:intergenic 15.0%
!!! ATGTTATAAGAATTTGTTAA+CGG - chr1.4:32619449-32619468 MS.gene43378:intron 15.0%
!! AAGCAAATAAAAACTTAAAC+AGG + chr1.4:32619656-32619675 None:intergenic 20.0%
!! AGCAAATAAAAACTTAAACA+GGG + chr1.4:32619655-32619674 None:intergenic 20.0%
!! ATTCTTATAACATATATGGA+AGG + chr1.4:32619442-32619461 None:intergenic 20.0%
!! GAAAGAAAAAAAAGAATTTG+TGG - chr1.4:32617988-32618007 MS.gene43378:CDS 20.0%
!!! AATTCTTTTTTTTCTTTCTC+AGG + chr1.4:32617986-32618005 None:intergenic 20.0%
!!! ATAATTTTGAGTTTATAGCT+TGG - chr1.4:32616400-32616419 MS.gene43378:intron 20.0%
!!! ATTGTTTTCATAAGATAACT+TGG - chr1.4:32616813-32616832 MS.gene43378:CDS 20.0%
!!! GATTTTTCTGATAACATTAA+GGG - chr1.4:32617779-32617798 MS.gene43378:CDS 20.0%
!!! TTTGTTTCTGTCATTAATAA+AGG - chr1.4:32619328-32619347 MS.gene43378:intron 20.0%
! AATAAGTTGTTTAACCAAAC+AGG + chr1.4:32616315-32616334 None:intergenic 25.0%
! AATTTGCAATTATTCGTAAC+AGG - chr1.4:32616109-32616128 MS.gene43378:CDS 25.0%
! ATAAAAGATGTTGAGATGTT+GGG - chr1.4:32618019-32618038 MS.gene43378:CDS 25.0%
! ATAAAGTGAAGAATGTGAAT+GGG - chr1.4:32617756-32617775 MS.gene43378:CDS 25.0%
! ATAAGTTGTTTAACCAAACA+GGG + chr1.4:32616314-32616333 None:intergenic 25.0%
! ATATATTGGCAAAAAAGGAT+CGG - chr1.4:32617688-32617707 MS.gene43378:CDS 25.0%
! ATCAAAAAATCTCAATCTCA+TGG - chr1.4:32618847-32618866 MS.gene43378:intron 25.0%
! ATGATAAACACTTACGTATT+AGG - chr1.4:32616361-32616380 MS.gene43378:intron 25.0%
! GATTGATTGACAATAGTTTA+GGG - chr1.4:32617081-32617100 MS.gene43378:intron 25.0%
! GTCAATCAATCAATCAATTT+GGG + chr1.4:32617072-32617091 None:intergenic 25.0%
! TCAAAGAAACAATTGAATGA+CGG + chr1.4:32617229-32617248 None:intergenic 25.0%
! TCAACATATATTGGCAAAAA+AGG - chr1.4:32617683-32617702 MS.gene43378:CDS 25.0%
! TGATAAACACTTACGTATTA+GGG - chr1.4:32616362-32616381 MS.gene43378:intron 25.0%
! TGATTGATTGACAATAGTTT+AGG - chr1.4:32617080-32617099 MS.gene43378:intron 25.0%
! TGTCAATCAATCAATCAATT+TGG + chr1.4:32617073-32617092 None:intergenic 25.0%
!! ATAAGTGATGTTGTCTTTTA+AGG - chr1.4:32616288-32616307 MS.gene43378:intron 25.0%
!! GGATTTTTCTGATAACATTA+AGG - chr1.4:32617778-32617797 MS.gene43378:CDS 25.0%
!! TAGAGGAGAATTTGAAATTA+TGG - chr1.4:32618209-32618228 MS.gene43378:CDS 25.0%
!! TATGATATTTCTGTAGTTCA+AGG + chr1.4:32616977-32616996 None:intergenic 25.0%
!! TGGTATTTATAGCCTTTTAT+GGG - chr1.4:32616558-32616577 MS.gene43378:CDS 25.0%
!! TTTTTGAACAAGTATGTACA+AGG - chr1.4:32618686-32618705 MS.gene43378:intron 25.0%
AAAAAGGAGATTCTAGCATA+TGG - chr1.4:32619757-32619776 MS.gene43378:intron 30.0%
AAAATCTCAATCTCATGGAA+TGG - chr1.4:32618852-32618871 MS.gene43378:intron 30.0%
AAAATTAATTAGCCAGGGTA+AGG - chr1.4:32618105-32618124 MS.gene43378:CDS 30.0%
AAAGCACAATAAGGAATACT+AGG - chr1.4:32616473-32616492 MS.gene43378:intron 30.0%
AAATCTCAATCTCATGGAAT+GGG - chr1.4:32618853-32618872 MS.gene43378:intron 30.0%
AACAAAAGAAAAAGGAGAGA+AGG - chr1.4:32618152-32618171 MS.gene43378:CDS 30.0%
AACGATAATAAACAGGATCA+CGG + chr1.4:32618318-32618337 None:intergenic 30.0%
AAGCACAATAAGGAATACTA+GGG - chr1.4:32616474-32616493 MS.gene43378:intron 30.0%
AAGCTACCACATATACAAAA+AGG - chr1.4:32619038-32619057 MS.gene43378:intron 30.0%
AATAGGAGAGTGATAGTTTA+AGG - chr1.4:32617045-32617064 MS.gene43378:intron 30.0%
AATATCAAAATCTTGCACGA+TGG - chr1.4:32617612-32617631 MS.gene43378:CDS 30.0%
AATTCATTAATGGCAGAACA+TGG - chr1.4:32617638-32617657 MS.gene43378:CDS 30.0%
ACAAAAGAAAAAGGAGAGAA+GGG - chr1.4:32618153-32618172 MS.gene43378:CDS 30.0%
ACGATGGTACAATTCATTAA+TGG - chr1.4:32617628-32617647 MS.gene43378:CDS 30.0%
AGAGAAACAATCACTAAACA+AGG + chr1.4:32617491-32617510 None:intergenic 30.0%
AGCAATATTTACTGCTTGTT+TGG + chr1.4:32616910-32616929 None:intergenic 30.0%
AGTTGGATACACTTTATACT+TGG + chr1.4:32618371-32618390 None:intergenic 30.0%
ATATATGGAAGGTTCATGAA+AGG + chr1.4:32619431-32619450 None:intergenic 30.0%
ATTGATAGATCATAGAAACG+AGG + chr1.4:32616089-32616108 None:intergenic 30.0%
CATAGTAAAGGAAGTAGATA+AGG - chr1.4:32619135-32619154 MS.gene43378:intron 30.0%
CCACATATACAAAAAGGATA+TGG - chr1.4:32619044-32619063 MS.gene43378:intron 30.0%
CCATCAAGTTTCATAGATTA+AGG + chr1.4:32617518-32617537 None:intergenic 30.0%
CCTTAATCTATGAAACTTGA+TGG - chr1.4:32617515-32617534 MS.gene43378:CDS 30.0%
CTTATCTACTTCCTTTACTA+TGG + chr1.4:32619137-32619156 None:intergenic 30.0%
GAAGTCACATCAACATATAT+TGG - chr1.4:32617674-32617693 MS.gene43378:CDS 30.0%
GATAAAAGATGTTGAGATGT+TGG - chr1.4:32618018-32618037 MS.gene43378:CDS 30.0%
GATAAAGTGAAGAATGTGAA+TGG - chr1.4:32617755-32617774 MS.gene43378:CDS 30.0%
GCTGAAAAATTAATTAGCCA+GGG - chr1.4:32618100-32618119 MS.gene43378:CDS 30.0%
GGACAATAATAAGGACAATA+TGG + chr1.4:32619523-32619542 None:intergenic 30.0%
TAAAGTGAAGAATGTGAATG+GGG - chr1.4:32617757-32617776 MS.gene43378:CDS 30.0%
TATAAAACTAGTTCCATGGA+AGG + chr1.4:32619497-32619516 None:intergenic 30.0%
TATATTGGCAAAAAAGGATC+GGG - chr1.4:32617689-32617708 MS.gene43378:CDS 30.0%
TCAAATTCTCCTCTATACTA+TGG + chr1.4:32618204-32618223 None:intergenic 30.0%
TTACCTCATTACGAAGAAAA+AGG - chr1.4:32619288-32619307 MS.gene43378:intron 30.0%
TTGTTTAGGGATCAAATTGA+AGG - chr1.4:32617154-32617173 MS.gene43378:CDS 30.0%
TTTAGTAGTAGTAGTATCAC+AGG + chr1.4:32617454-32617473 None:intergenic 30.0%
! AGTGATCAACATTTTAAGCA+TGG + chr1.4:32618810-32618829 None:intergenic 30.0%
! ATACCTTTTTCTTCGTAATG+AGG + chr1.4:32619294-32619313 None:intergenic 30.0%
! CAAGTATATTGATGACTACT+TGG - chr1.4:32617319-32617338 MS.gene43378:CDS 30.0%
! CCATATCCTTTTTGTATATG+TGG + chr1.4:32619047-32619066 None:intergenic 30.0%
! CCTTTGGTTTCTTTCAAAAT+AGG - chr1.4:32617028-32617047 MS.gene43378:intron 30.0%
! GGAGAATTTGAAATTATGGA+AGG - chr1.4:32618213-32618232 MS.gene43378:CDS 30.0%
! GGTCTTTAGGAATATATTGA+CGG - chr1.4:32616766-32616785 MS.gene43378:CDS 30.0%
! GTGGTATTTATAGCCTTTTA+TGG - chr1.4:32616557-32616576 MS.gene43378:CDS 30.0%
! TACTTGCAAAAAGCACAATA+AGG - chr1.4:32616464-32616483 MS.gene43378:intron 30.0%
! TTTTCTGATAACATTAAGGG+AGG - chr1.4:32617782-32617801 MS.gene43378:CDS 30.0%
!! AAATGTTTTTCAAACTAGCC+AGG - chr1.4:32616206-32616225 MS.gene43378:intron 30.0%
!! ACATTTTGGCCATAGAAATT+AGG + chr1.4:32616192-32616211 None:intergenic 30.0%
!! CCTATTTTGAAAGAAACCAA+AGG + chr1.4:32617031-32617050 None:intergenic 30.0%
!!! GGCTAGTTTGAAAAACATTT+TGG + chr1.4:32616206-32616225 None:intergenic 30.0%
AAGTAGATAAGGACCAAGAT+GGG - chr1.4:32619146-32619165 MS.gene43378:intron 35.0%
AATATGCGAAATCTTAAGCG+TGG - chr1.4:32619787-32619806 MS.gene43378:intron 35.0%
AATCAAACTCCATCAATGTC+AGG + chr1.4:32619270-32619289 None:intergenic 35.0%
ACGCTTAAGATTTCGCATAT+TGG + chr1.4:32619788-32619807 None:intergenic 35.0%
AGATCATAGAAACGAGGAAA+AGG + chr1.4:32616083-32616102 None:intergenic 35.0%
AGCTTGAGAAAGGAAAGAAT+GGG - chr1.4:32619683-32619702 MS.gene43378:CDS 35.0%
AGGGTTTAGTATCGTATTCT+AGG - chr1.4:32616493-32616512 MS.gene43378:intron 35.0%
AGGTGAAGATGAATAGGTAT+AGG + chr1.4:32617434-32617453 None:intergenic 35.0%
ATCGAGAATAGTTTCAAGAC+TGG + chr1.4:32617001-32617020 None:intergenic 35.0%
ATGCAGAAACCATAGTATAG+AGG - chr1.4:32618192-32618211 MS.gene43378:CDS 35.0%
ATGTAACGCAGAAGAACAAA+TGG + chr1.4:32616150-32616169 None:intergenic 35.0%
ATTCTCGATAGTTAGTCCTT+TGG - chr1.4:32617012-32617031 MS.gene43378:intron 35.0%
CTAACTAGTTCATCTAACTC+AGG + chr1.4:32619247-32619266 None:intergenic 35.0%
CTAGGGTTTAGACTGATTAT+TGG - chr1.4:32616511-32616530 MS.gene43378:intron 35.0%
GATCAGGATGGACAATAATA+AGG + chr1.4:32619532-32619551 None:intergenic 35.0%
GATCATAGAAACGAGGAAAA+GGG + chr1.4:32616082-32616101 None:intergenic 35.0%
GCAACTCTTCCTAATTTCTA+TGG - chr1.4:32616180-32616199 MS.gene43378:intron 35.0%
GGCTGAAAAATTAATTAGCC+AGG - chr1.4:32618099-32618118 MS.gene43378:CDS 35.0%
GGGTTTAGTATCGTATTCTA+GGG - chr1.4:32616494-32616513 MS.gene43378:intron 35.0%
GGTTTGCAACGATAATAAAC+AGG + chr1.4:32618325-32618344 None:intergenic 35.0%
GTGCTATAAAACTAGTTCCA+TGG + chr1.4:32619501-32619520 None:intergenic 35.0%
GTTCATGAAAGGTTCATGAT+TGG + chr1.4:32619420-32619439 None:intergenic 35.0%
TACTTAGGCAGCAAGTAATA+GGG - chr1.4:32616597-32616616 MS.gene43378:CDS 35.0%
TATCACAGGTGAAGATGAAT+AGG + chr1.4:32617440-32617459 None:intergenic 35.0%
TCCACGTGAACAAAAGAAAA+AGG - chr1.4:32618144-32618163 MS.gene43378:CDS 35.0%
TTACTTAGGCAGCAAGTAAT+AGG - chr1.4:32616596-32616615 MS.gene43378:CDS 35.0%
TTATGGAAGGAAATGATTGC+AGG - chr1.4:32618226-32618245 MS.gene43378:CDS 35.0%
TTCTCATCTACGAATTTAGC+CGG - chr1.4:32618515-32618534 MS.gene43378:CDS 35.0%
TTGATCACTGTTCTTGTACA+GGG - chr1.4:32618821-32618840 MS.gene43378:intron 35.0%
TTGGATCCAATTCTATGATG+AGG + chr1.4:32618352-32618371 None:intergenic 35.0%
TTGTGTCAGTAGAAATCGTA+TGG + chr1.4:32619397-32619416 None:intergenic 35.0%
TTTGTTCTTCTGCGTTACAT+TGG - chr1.4:32616150-32616169 MS.gene43378:intron 35.0%
! ACAAAAAGTATGAAGCTGCT+GGG - chr1.4:32619011-32619030 MS.gene43378:intron 35.0%
! AGTGGTGTTTTACATCTTGA+AGG - chr1.4:32619184-32619203 MS.gene43378:intron 35.0%
! TCCTTTTTCTTTTGTTCACG+TGG + chr1.4:32618148-32618167 None:intergenic 35.0%
! TGCATCCATTTTCAAAAGCA+GGG + chr1.4:32617301-32617320 None:intergenic 35.0%
! TTGCATCCATTTTCAAAAGC+AGG + chr1.4:32617302-32617321 None:intergenic 35.0%
!! AATAACACGATTGGTTTCGA+AGG + chr1.4:32619871-32619890 None:intergenic 35.0%
!! ACTTTTAAGAGAATGCGATC+AGG + chr1.4:32619548-32619567 None:intergenic 35.0%
!! TGTTAGTTGTTGTTTGCTTC+TGG - chr1.4:32617194-32617213 MS.gene43378:CDS 35.0%
!!! AGAATCTCCTTTTTTGTGCA+AGG + chr1.4:32619751-32619770 None:intergenic 35.0%
!!! GAATCTCCTTTTTTGTGCAA+GGG + chr1.4:32619750-32619769 None:intergenic 35.0%
!!! GAGAAGCGTACATTTTTAGT+TGG - chr1.4:32617341-32617360 MS.gene43378:CDS 35.0%
AAAGACCTAAGACCTCCAAA+AGG + chr1.4:32616753-32616772 None:intergenic 40.0%
AAAGTGCATACCCTATGCAT+AGG - chr1.4:32619563-32619582 MS.gene43378:intron 40.0%
AAATGATTGCAGGATCAGAG+AGG - chr1.4:32618236-32618255 MS.gene43378:CDS 40.0%
AACGCAAAATAACCTGACCT+TGG + chr1.4:32617949-32617968 None:intergenic 40.0%
AAGACCTAAGACCTCCAAAA+GGG + chr1.4:32616752-32616771 None:intergenic 40.0%
AAGGCTATAAATACCACCCT+TGG + chr1.4:32616554-32616573 None:intergenic 40.0%
AATCGCAGATCTAGCTATCT+GGG - chr1.4:32617376-32617395 MS.gene43378:CDS 40.0%
AATGATTGCAGGATCAGAGA+GGG - chr1.4:32618237-32618256 MS.gene43378:CDS 40.0%
ACTTAAACAGGGAAGAAAGC+AGG + chr1.4:32619644-32619663 None:intergenic 40.0%
ACTTAGGCAGCAAGTAATAG+GGG - chr1.4:32616598-32616617 MS.gene43378:CDS 40.0%
AGGCTATAAATACCACCCTT+GGG + chr1.4:32616553-32616572 None:intergenic 40.0%
AGGGTGAAGAGATATGAGAA+AGG + chr1.4:32616063-32616082 None:intergenic 40.0%
ATCGTAATGCTCAGTATCAC+AGG - chr1.4:32618464-32618483 MS.gene43378:CDS 40.0%
ATGCGGACAAATGATTTCTC+AGG + chr1.4:32618980-32618999 None:intergenic 40.0%
ATGGTATTCACTTGACCGAA+GGG + chr1.4:32618443-32618462 None:intergenic 40.0%
CAGCTTGAGAAAGGAAAGAA+TGG - chr1.4:32619682-32619701 MS.gene43378:CDS 40.0%
CCAATATGAAGATAGCCACT+GGG + chr1.4:32617881-32617900 None:intergenic 40.0%
CCAATGCCTCATCATAGAAT+TGG - chr1.4:32618343-32618362 MS.gene43378:intron 40.0%
CCAATTCTATGATGAGGCAT+TGG + chr1.4:32618346-32618365 None:intergenic 40.0%
CCACAAAACTGAAGCTTACT+TGG - chr1.4:32619218-32619237 MS.gene43378:intron 40.0%
CGAATTTAGCCGGTTGAATA+TGG - chr1.4:32618525-32618544 MS.gene43378:CDS 40.0%
CTTACGTATTAGGGTCTGTT+TGG - chr1.4:32616371-32616390 MS.gene43378:intron 40.0%
CTTGAGTGAACCTTCAGTTT+GGG - chr1.4:32616928-32616947 MS.gene43378:CDS 40.0%
GAAGTAGATAAGGACCAAGA+TGG - chr1.4:32619145-32619164 MS.gene43378:intron 40.0%
GAGTGTAGACCATATTCAAC+CGG + chr1.4:32618537-32618556 None:intergenic 40.0%
GATACTGAGCATTACGATCA+TGG + chr1.4:32618462-32618481 None:intergenic 40.0%
GCTTAACCCTTGCACAAAAA+AGG - chr1.4:32619741-32619760 MS.gene43378:intron 40.0%
GGACAGGCAAAATCATAAGT+TGG + chr1.4:32618388-32618407 None:intergenic 40.0%
GGGATTGCAAATAACACGAT+TGG + chr1.4:32619880-32619899 None:intergenic 40.0%
GGGTGAAGAGATATGAGAAA+GGG + chr1.4:32616062-32616081 None:intergenic 40.0%
GTATTGTTAACCCTCACTGA+TGG - chr1.4:32618953-32618972 MS.gene43378:intron 40.0%
GTTGATCACTGTTCTTGTAC+AGG - chr1.4:32618820-32618839 MS.gene43378:intron 40.0%
TATGCACATGTACTCTCATC+AGG - chr1.4:32617275-32617294 MS.gene43378:CDS 40.0%
TCAGCAAACGAAAGCTTTCA+TGG - chr1.4:32618560-32618579 MS.gene43378:CDS 40.0%
TCAGTATCACAGGATTCAAG+AGG - chr1.4:32618474-32618493 MS.gene43378:CDS 40.0%
TCCAATATGAAGATAGCCAC+TGG + chr1.4:32617882-32617901 None:intergenic 40.0%
TCTGATAACATTAAGGGAGG+AGG - chr1.4:32617785-32617804 MS.gene43378:CDS 40.0%
TGATCACTGTTCTTGTACAG+GGG - chr1.4:32618822-32618841 MS.gene43378:intron 40.0%
TGGAGAGAAAGGGATATTTC+AGG - chr1.4:32619824-32619843 MS.gene43378:CDS 40.0%
TTAAGAGAATGCGATCAGGA+TGG + chr1.4:32619544-32619563 None:intergenic 40.0%
TTCACTTTATCCTTGACGAC+TGG + chr1.4:32617746-32617765 None:intergenic 40.0%
TTCCATGGAAGGTTCATGAA+AGG + chr1.4:32619486-32619505 None:intergenic 40.0%
TTGGGGAAATGCCATAGTAA+AGG - chr1.4:32619123-32619142 MS.gene43378:intron 40.0%
TTTGGAGGTCTTAGGTCTTT+AGG - chr1.4:32616753-32616772 MS.gene43378:CDS 40.0%
! AACCAAAGTGCCTATGCATA+GGG + chr1.4:32619576-32619595 None:intergenic 40.0%
! ACTAGTTAGCCTGACATTGA+TGG - chr1.4:32619258-32619277 MS.gene43378:intron 40.0%
! ACTTTTCCAACTTCAGCATC+TGG + chr1.4:32617836-32617855 None:intergenic 40.0%
! AGATTACTTCCCTGAGTTGA+TGG - chr1.4:32618072-32618091 MS.gene43378:CDS 40.0%
! AGGAAGTAACCTTGATGGAT+TGG - chr1.4:32619104-32619123 MS.gene43378:intron 40.0%
! CACAAAAAGTATGAAGCTGC+TGG - chr1.4:32619010-32619029 MS.gene43378:intron 40.0%
! CATCTACACTATGCCTTTTC+AGG - chr1.4:32617551-32617570 MS.gene43378:CDS 40.0%
! CCAAGTAAGCTTCAGTTTTG+TGG + chr1.4:32619221-32619240 None:intergenic 40.0%
! CGAAGAAAAAGGTATGTGCA+TGG - chr1.4:32619299-32619318 MS.gene43378:intron 40.0%
! CTGAAAAGGCATAGTGTAGA+TGG + chr1.4:32617553-32617572 None:intergenic 40.0%
! CTTTGTTTGCAGCTTGAGAA+AGG - chr1.4:32619673-32619692 MS.gene43378:CDS 40.0%
! TTTTGTGCCTAGGTATGATG+CGG + chr1.4:32618997-32619016 None:intergenic 40.0%
!! GAAGTAACCTTGATGGATTG+GGG - chr1.4:32619106-32619125 MS.gene43378:intron 40.0%
!! GCTTCATACTTTTTGTGCCT+AGG + chr1.4:32619007-32619026 None:intergenic 40.0%
!! GGAAGTAACCTTGATGGATT+GGG - chr1.4:32619105-32619124 MS.gene43378:intron 40.0%
!! GTGTTATTTGCAATCCCAGA+TGG - chr1.4:32619883-32619902 MS.gene43378:CDS 40.0%
!!! AGCAAGTAATAGGGGTGTTT+TGG - chr1.4:32616606-32616625 MS.gene43378:CDS 40.0%
!!! GCAAGTAATAGGGGTGTTTT+GGG - chr1.4:32616607-32616626 MS.gene43378:CDS 40.0%
!!! TAGGGGTGTTTTGGGTATTT+AGG - chr1.4:32616615-32616634 MS.gene43378:CDS 40.0%
!!! TTGTCTTTTAAGGCCCTGTT+TGG - chr1.4:32616298-32616317 MS.gene43378:intron 40.0%
AAGAAAAAGGAGAGAAGGGC+TGG - chr1.4:32618157-32618176 MS.gene43378:CDS 45.0%
ACCAAGATGGGAATGTCACA+GGG - chr1.4:32619158-32619177 MS.gene43378:intron 45.0%
ACGAGCATCAACAAATGGAC+AGG + chr1.4:32618404-32618423 None:intergenic 45.0%
AGGTGAGGAAGTAACCTTGA+TGG - chr1.4:32619099-32619118 MS.gene43378:intron 45.0%
AGTATTGCAGCTGGAGAGAA+AGG - chr1.4:32619813-32619832 MS.gene43378:CDS 45.0%
AGTTCAGAGACCAAGTTCGA+GGG - chr1.4:32617124-32617143 MS.gene43378:intron 45.0%
ATGATTGCAGGATCAGAGAG+GGG - chr1.4:32618238-32618257 MS.gene43378:CDS 45.0%
ATTTCTCAGGACCATCAGTG+AGG + chr1.4:32618967-32618986 None:intergenic 45.0%
CAATCGCAGATCTAGCTATC+TGG - chr1.4:32617375-32617394 MS.gene43378:CDS 45.0%
CACAGGATTCAAGAGGACAT+GGG - chr1.4:32618481-32618500 MS.gene43378:CDS 45.0%
CATCAACATATGCCTTACCC+TGG + chr1.4:32618120-32618139 None:intergenic 45.0%
CATGGTATTCACTTGACCGA+AGG + chr1.4:32618444-32618463 None:intergenic 45.0%
CATTTGTCCGCATCATACCT+AGG - chr1.4:32618987-32619006 MS.gene43378:intron 45.0%
CCACATTTCTCTTCTCCAAC+GGG - chr1.4:32616030-32616049 MS.gene43378:CDS 45.0%
CCCACATTTCTCTTCTCCAA+CGG - chr1.4:32616029-32616048 MS.gene43378:CDS 45.0%
CCCAGTGGCTATCTTCATAT+TGG - chr1.4:32617878-32617897 MS.gene43378:CDS 45.0%
CCGTTGGAGAAGAGAAATGT+GGG + chr1.4:32616032-32616051 None:intergenic 45.0%
CCTTCACGAGCATCAACAAA+TGG + chr1.4:32618409-32618428 None:intergenic 45.0%
CGAACAATTCCTTGCACTGT+AGG + chr1.4:32618631-32618650 None:intergenic 45.0%
CGAGGGTGAGTGATTGTTTA+GGG - chr1.4:32617141-32617160 MS.gene43378:intron 45.0%
CGTTGGAGAAGAGAAATGTG+GGG + chr1.4:32616031-32616050 None:intergenic 45.0%
CTGTAGTTCAAGGACCCAAT+AGG + chr1.4:32616967-32616986 None:intergenic 45.0%
GAAAGAGATGGGAAAGCTTG+AGG - chr1.4:32617579-32617598 MS.gene43378:CDS 45.0%
GACCCAATAGGAGAGAAAGT+GGG + chr1.4:32616955-32616974 None:intergenic 45.0%
GACCTTTCATGAACCTTCCA+TGG - chr1.4:32619481-32619500 MS.gene43378:intron 45.0%
GATCACTGTTCTTGTACAGG+GGG - chr1.4:32618823-32618842 MS.gene43378:intron 45.0%
GATCTTCCAGATGCTGAAGT+TGG - chr1.4:32617827-32617846 MS.gene43378:CDS 45.0%
GCTTGAGTGAACCTTCAGTT+TGG - chr1.4:32616927-32616946 MS.gene43378:CDS 45.0%
GGAAGATCTATCTCTACCGA+AGG + chr1.4:32617815-32617834 None:intergenic 45.0%
GTATTGCAGCTGGAGAGAAA+GGG - chr1.4:32619814-32619833 MS.gene43378:CDS 45.0%
GTCCCACTTTCTCTCCTATT+GGG - chr1.4:32616950-32616969 MS.gene43378:CDS 45.0%
GTGCAAGGAATTGTTCGTAG+AGG - chr1.4:32618634-32618653 MS.gene43378:intron 45.0%
GTGTTATGTTCGTGGGAAGT+TGG - chr1.4:32618267-32618286 MS.gene43378:intron 45.0%
GTTGGAGAAGAGAAATGTGG+GGG + chr1.4:32616030-32616049 None:intergenic 45.0%
TACCCTATGCATAGGCACTT+TGG - chr1.4:32619571-32619590 MS.gene43378:intron 45.0%
TAGTTCAGAGACCAAGTTCG+AGG - chr1.4:32617123-32617142 MS.gene43378:intron 45.0%
TATTTGCAATCCCAGATGGC+AGG - chr1.4:32619887-32619906 MS.gene43378:CDS 45.0%
TCACAGGATTCAAGAGGACA+TGG - chr1.4:32618480-32618499 MS.gene43378:CDS 45.0%
TCATGGAATGGGACAAGCTA+TGG - chr1.4:32618864-32618883 MS.gene43378:intron 45.0%
TCGAGGGTGAGTGATTGTTT+AGG - chr1.4:32617140-32617159 MS.gene43378:intron 45.0%
TCTCTTTCCAGCACCTGAAA+AGG + chr1.4:32617567-32617586 None:intergenic 45.0%
TGAAGAAAATCCGACGAGCT+TGG + chr1.4:32615976-32615995 None:intergenic 45.0%
TTGTGCAAGGGTTAAGCACA+GGG + chr1.4:32619738-32619757 None:intergenic 45.0%
TTTCTCAGGACCATCAGTGA+GGG + chr1.4:32618966-32618985 None:intergenic 45.0%
TTTGTGCAAGGGTTAAGCAC+AGG + chr1.4:32619739-32619758 None:intergenic 45.0%
! AAGGTATCACTCATGCCCTT+CGG - chr1.4:32618425-32618444 MS.gene43378:intron 45.0%
! CATTTTGCTGAGCGATACCA+AGG - chr1.4:32617929-32617948 MS.gene43378:CDS 45.0%
! CCATTTGTTGATGCTCGTGA+AGG - chr1.4:32618406-32618425 MS.gene43378:intron 45.0%
! GAACCAAAGTGCCTATGCAT+AGG + chr1.4:32619577-32619596 None:intergenic 45.0%
! GTATTTAGGCGCGTTCTAGA+GGG - chr1.4:32616629-32616648 MS.gene43378:CDS 45.0%
!! AAAGCCCTTTTGGAGGTCTT+AGG - chr1.4:32616745-32616764 MS.gene43378:CDS 45.0%
!! AGGGTTCTAGAAGCGAACAA+AGG - chr1.4:32616648-32616667 MS.gene43378:CDS 45.0%
!! GGATCACGGAGTGATTTGTT+TGG + chr1.4:32618304-32618323 None:intergenic 45.0%
!! GTTCTAGAAGCGAACAAAGG+CGG - chr1.4:32616651-32616670 MS.gene43378:CDS 45.0%
!! TCAGGCCCTGCTTTTGAAAA+TGG - chr1.4:32617293-32617312 MS.gene43378:CDS 45.0%
!! TTCAGGTGCTGGAAAGAGAT+GGG - chr1.4:32617568-32617587 MS.gene43378:CDS 45.0%
!! TTTCAGGTGCTGGAAAGAGA+TGG - chr1.4:32617567-32617586 MS.gene43378:CDS 45.0%
!!! TCTTTTGGCTTGGTTGCAGA+TGG + chr1.4:32617719-32617738 None:intergenic 45.0%
AAAAGACCAGCCAGTCGTCA+AGG - chr1.4:32617733-32617752 MS.gene43378:CDS 50.0%
AAACGCGCCTTTGAGCCTTA+TGG - chr1.4:32616685-32616704 MS.gene43378:CDS 50.0%
ACCCTGTGACATTCCCATCT+TGG + chr1.4:32619162-32619181 None:intergenic 50.0%
AGAAGGGCCATAAGGCTCAA+AGG + chr1.4:32616695-32616714 None:intergenic 50.0%
AGAGTCTGTATCAGCAGGTG+AGG - chr1.4:32619084-32619103 MS.gene43378:intron 50.0%
ATGCCTTGAGATTGCTCCCA+AGG - chr1.4:32616534-32616553 MS.gene43378:CDS 50.0%
ATGGACACGTGAATTGCTCG+TGG + chr1.4:32619378-32619397 None:intergenic 50.0%
CAATCACTCACCCTCGAACT+TGG + chr1.4:32617137-32617156 None:intergenic 50.0%
CAGCCAGTTCCATCAACTCA+GGG + chr1.4:32618084-32618103 None:intergenic 50.0%
CCACGATTTCCTACAGTGCA+AGG - chr1.4:32618619-32618638 MS.gene43378:intron 50.0%
CCCGTTGGAGAAGAGAAATG+TGG + chr1.4:32616033-32616052 None:intergenic 50.0%
CCTTGCACTGTAGGAAATCG+TGG + chr1.4:32618622-32618641 None:intergenic 50.0%
CGTAACAGGTCGAAATTGCG+TGG - chr1.4:32616123-32616142 MS.gene43378:CDS 50.0%
CTAAGTAACCACACACCTGC+AGG + chr1.4:32616584-32616603 None:intergenic 50.0%
CTGCAGGTGTGTGGTTACTT+AGG - chr1.4:32616582-32616601 MS.gene43378:CDS 50.0%
CTTTATCCTTGACGACTGGC+TGG + chr1.4:32617742-32617761 None:intergenic 50.0%
GAAAGTGGGACCCAAACTGA+AGG + chr1.4:32616941-32616960 None:intergenic 50.0%
GAACAAAGGCGGTGTCTTGA+GGG - chr1.4:32616662-32616681 MS.gene43378:CDS 50.0%
GACCAAGATGGGAATGTCAC+AGG - chr1.4:32619157-32619176 MS.gene43378:intron 50.0%
GATGCAGCGATTACCGCTAA+CGG + chr1.4:32615954-32615973 None:intergenic 50.0%
GCTCGCAGTGTTATGTTCGT+GGG - chr1.4:32618260-32618279 MS.gene43378:intron 50.0%
GGACCCAATAGGAGAGAAAG+TGG + chr1.4:32616956-32616975 None:intergenic 50.0%
GGCATTTCCCCAATCCATCA+AGG + chr1.4:32619116-32619135 None:intergenic 50.0%
GGGAATGTCACAGGGTTAAG+TGG - chr1.4:32619166-32619185 MS.gene43378:intron 50.0%
GGTATTTAGGCGCGTTCTAG+AGG - chr1.4:32616628-32616647 MS.gene43378:CDS 50.0%
GGTCCCACTTTCTCTCCTAT+TGG - chr1.4:32616949-32616968 MS.gene43378:CDS 50.0%
TCAGCCAGTTCCATCAACTC+AGG + chr1.4:32618085-32618104 None:intergenic 50.0%
TGAAGATAGCCACTGGGTTC+AGG + chr1.4:32617875-32617894 None:intergenic 50.0%
TGCCTTGAGATTGCTCCCAA+GGG - chr1.4:32616535-32616554 MS.gene43378:CDS 50.0%
TGTATGTCCCAGACACACTG+CGG - chr1.4:32618913-32618932 MS.gene43378:intron 50.0%
! ATAGCCTTTTATGGGCCTGC+AGG - chr1.4:32616566-32616585 MS.gene43378:CDS 50.0%
! CAGTGTGTCTGGGACATACA+GGG + chr1.4:32618913-32618932 None:intergenic 50.0%
! GGAGGGTCTAAAAGCCCTTT+TGG - chr1.4:32616735-32616754 MS.gene43378:CDS 50.0%
! GGGTCTAAAAGCCCTTTTGG+AGG - chr1.4:32616738-32616757 MS.gene43378:CDS 50.0%
! TTTGAGCCTTATGGCCCTTC+TGG - chr1.4:32616694-32616713 MS.gene43378:CDS 50.0%
!! ACACGATTGGTTTCGAAGGC+CGG + chr1.4:32619867-32619886 None:intergenic 50.0%
!! CTTCCCTGAGTTGATGGAAC+TGG - chr1.4:32618078-32618097 MS.gene43378:CDS 50.0%
!!! CACTATGCCTTTTCAGGTGC+TGG - chr1.4:32617557-32617576 MS.gene43378:CDS 50.0%
!!! TTGACGACTGGCTGGTCTTT+TGG + chr1.4:32617734-32617753 None:intergenic 50.0%
AGAAATGTGGGGGCGGAATC+AGG + chr1.4:32616020-32616039 None:intergenic 55.0%
ATCGCTGCATCCAAGCTCGT+CGG - chr1.4:32615963-32615982 MS.gene43378:CDS 55.0%
ATGTCTGCTGCCTGCCATCT+GGG + chr1.4:32619900-32619919 None:intergenic 55.0%
CACACCTGCAGGCCCATAAA+AGG + chr1.4:32616573-32616592 None:intergenic 55.0%
CACCCTTGGGAGCAATCTCA+AGG + chr1.4:32616540-32616559 None:intergenic 55.0%
CAGACACACTGCGGTCATTG+CGG - chr1.4:32618922-32618941 MS.gene43378:intron 55.0%
CGAACAAAGGCGGTGTCTTG+AGG - chr1.4:32616661-32616680 MS.gene43378:CDS 55.0%
CGATTTGCACCTGAACCCAG+TGG - chr1.4:32617863-32617882 MS.gene43378:CDS 55.0%
CTTGAGATTGCTCCCAAGGG+TGG - chr1.4:32616538-32616557 MS.gene43378:CDS 55.0%
GACGCAGAGTCTGTATCAGC+AGG - chr1.4:32619079-32619098 MS.gene43378:intron 55.0%
GAGAAAGGGAACGTACCCGT+TGG + chr1.4:32616048-32616067 None:intergenic 55.0%
GCAATGACCGCAGTGTGTCT+GGG + chr1.4:32618923-32618942 None:intergenic 55.0%
GCAGATCTAGCTATCTGGGC+AGG - chr1.4:32617380-32617399 MS.gene43378:CDS 55.0%
GGAGAAGAGAAATGTGGGGG+CGG + chr1.4:32616027-32616046 None:intergenic 55.0%
GGCTCGCAGTGTTATGTTCG+TGG - chr1.4:32618259-32618278 MS.gene43378:intron 55.0%
GGTGTGATGTACCCTTCGTC+CGG - chr1.4:32619845-32619864 MS.gene43378:CDS 55.0%
TAAGGGAGGAGGCAAGCCTT+CGG - chr1.4:32617796-32617815 MS.gene43378:CDS 55.0%
TGCTGAGCGATACCAAGGTC+AGG - chr1.4:32617934-32617953 MS.gene43378:CDS 55.0%
TTTATGGGCCTGCAGGTGTG+TGG - chr1.4:32616573-32616592 MS.gene43378:CDS 55.0%
! AGCCTTATGGCCCTTCTGGA+GGG - chr1.4:32616698-32616717 MS.gene43378:CDS 55.0%
! GCAGTGTGTCTGGGACATAC+AGG + chr1.4:32618914-32618933 None:intergenic 55.0%
!! AGGAGGAAGGGAGGTGTCAA+TGG + chr1.4:32616000-32616019 None:intergenic 55.0%
!! GCGTGGAGAAGTATTGCAGC+TGG - chr1.4:32619804-32619823 MS.gene43378:CDS 55.0%
!!! GACTGGCTGGTCTTTTGGCT+TGG + chr1.4:32617729-32617748 None:intergenic 55.0%
AATGTGGGGGCGGAATCAGG+AGG + chr1.4:32616017-32616036 None:intergenic 60.0%
CGCAATGACCGCAGTGTGTC+TGG + chr1.4:32618924-32618943 None:intergenic 60.0%
CGTGGCGGCAGGGAAAGAAA+GGG + chr1.4:32615928-32615947 None:intergenic 60.0%
GATGTCTGCTGCCTGCCATC+TGG + chr1.4:32619901-32619920 None:intergenic 60.0%
GATTACCGCTAACGGTGGCG+TGG + chr1.4:32615946-32615965 None:intergenic 60.0%
GCAGCGATTACCGCTAACGG+TGG + chr1.4:32615951-32615970 None:intergenic 60.0%
GCTATCTGGGCAGGTCTTGC+AGG - chr1.4:32617389-32617408 MS.gene43378:CDS 60.0%
GGTTTCGAAGGCCGGACGAA+GGG + chr1.4:32619859-32619878 None:intergenic 60.0%
TGGTTTCGAAGGCCGGACGA+AGG + chr1.4:32619860-32619879 None:intergenic 60.0%
! GAGCCTTATGGCCCTTCTGG+AGG - chr1.4:32616697-32616716 MS.gene43378:CDS 60.0%
AGACCTCAGCGCCCTCCAGA+AGG + chr1.4:32616712-32616731 None:intergenic 65.0%
CGCCCTCCAGAAGGGCCATA+AGG + chr1.4:32616703-32616722 None:intergenic 65.0%
GACCTCAGCGCCCTCCAGAA+GGG + chr1.4:32616711-32616730 None:intergenic 65.0%
GCGTGGCGGCAGGGAAAGAA+AGG + chr1.4:32615929-32615948 None:intergenic 65.0%
GGCGGAATCAGGAGGAAGGG+AGG + chr1.4:32616009-32616028 None:intergenic 65.0%
GGGGGCGGAATCAGGAGGAA+GGG + chr1.4:32616012-32616031 None:intergenic 65.0%
TACCGCTAACGGTGGCGTGG+CGG + chr1.4:32615943-32615962 None:intergenic 65.0%
TGGGGGCGGAATCAGGAGGA+AGG + chr1.4:32616013-32616032 None:intergenic 65.0%
!! TGGAGGGCGCTGAGGTCTCT+GGG - chr1.4:32616714-32616733 MS.gene43378:CDS 65.0%
CTAACGGTGGCGTGGCGGCA+GGG + chr1.4:32615938-32615957 None:intergenic 70.0%
TGCCGCCACGCCACCGTTAG+CGG - chr1.4:32615938-32615957 MS.gene43378:CDS 70.0%
!! AGGGCGCTGAGGTCTCTGGG+AGG - chr1.4:32616717-32616736 MS.gene43378:CDS 70.0%
!! CTGGAGGGCGCTGAGGTCTC+TGG - chr1.4:32616713-32616732 MS.gene43378:CDS 70.0%
!! GGGCGCTGAGGTCTCTGGGA+GGG - chr1.4:32616718-32616737 MS.gene43378:CDS 70.0%
GCTAACGGTGGCGTGGCGGC+AGG + chr1.4:32615939-32615958 None:intergenic 75.0%
!! GGCCCTTCTGGAGGGCGCTG+AGG - chr1.4:32616706-32616725 MS.gene43378:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 32615912 32619930 32615912 ID=MS.gene43378
chr1.4 mRNA 32615912 32619930 32615912 ID=MS.gene43378.t1;Parent=MS.gene43378
chr1.4 exon 32619791 32619930 32619791 ID=MS.gene43378.t1.exon1;Parent=MS.gene43378.t1
chr1.4 CDS 32619791 32619930 32619791 ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4 exon 32619615 32619711 32619615 ID=MS.gene43378.t1.exon2;Parent=MS.gene43378.t1
chr1.4 CDS 32619615 32619711 32619615 ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4 exon 32618432 32618585 32618432 ID=MS.gene43378.t1.exon3;Parent=MS.gene43378.t1
chr1.4 CDS 32618432 32618585 32618432 ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4 exon 32617146 32618269 32617146 ID=MS.gene43378.t1.exon4;Parent=MS.gene43378.t1
chr1.4 CDS 32617146 32618269 32617146 ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4 exon 32616533 32617000 32616533 ID=MS.gene43378.t1.exon5;Parent=MS.gene43378.t1
chr1.4 CDS 32616533 32617000 32616533 ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
chr1.4 exon 32615912 32616157 32615912 ID=MS.gene43378.t1.exon6;Parent=MS.gene43378.t1
chr1.4 CDS 32615912 32616157 32615912 ID=cds.MS.gene43378.t1;Parent=MS.gene43378.t1
Gene Sequence

>MS.gene43378

ATGGATATCAAAACCCTTTCTTTCCCTGCCGCCACGCCACCGTTAGCGGTAATCGCTGCATCCAAGCTCGTCGGATTTTCTTCATCCATTGACACCTCCCTTCCTCCTGATTCCGCCCCCACATTTCTCTTCTCCAACGGGTACGTTCCCTTTCTCATATCTCTTCACCCTTTTCCTCGTTTCTATGATCTATCAATAATTTGCAATTATTCGTAACAGGTCGAAATTGCGTGGACCATTTGTTCTTCTGCGTTACATTGGAAGAACTGCAACTCTTCCTAATTTCTATGGCCAAAATGTTTTTCAAACTAGCCAGGTTATTTTTTATGATATATAATAGCATAAGATGTTTTAGTGAAATTATTGTTCACATTGAATAAGTGATGTTGTCTTTTAAGGCCCTGTTTGGTTAAACAACTTATTTGCAGCTTATAGCACAAGCACTTATCATGATAAACACTTACGTATTAGGGTCTGTTTGGTTAGACATAATTTTGAGTTTATAGCTTGGTATTATAAGTTAGTTTATAAGCTCTTTCTACAACAAAAGTGTACTTGCAAAAAGCACAATAAGGAATACTAGGGTTTAGTATCGTATTCTAGGGTTTAGACTGATTATTGGATGCCTTGAGATTGCTCCCAAGGGTGGTATTTATAGCCTTTTATGGGCCTGCAGGTGTGTGGTTACTTAGGCAGCAAGTAATAGGGGTGTTTTGGGTATTTAGGCGCGTTCTAGAGGGTTCTAGAAGCGAACAAAGGCGGTGTCTTGAGGGAAACGCGCCTTTGAGCCTTATGGCCCTTCTGGAGGGCGCTGAGGTCTCTGGGAGGGTCTAAAAGCCCTTTTGGAGGTCTTAGGTCTTTAGGAATATATTGACGGTTCAAAAAGATAAAATGTAGTTAAATTGTTTTCATAAGATAACTTGGAGAACGTATGAAGATAAGCTAAGCTGTTAAAAGCTTATGAAAAATTTCATGAGCTTTTTTCATAAGTTCTTCCAAACAAGCAGTAAATATTGCTTGAGTGAACCTTCAGTTTGGGTCCCACTTTCTCTCCTATTGGGTCCTTGAACTACAGAAATATCATAACCAGTCTTGAAACTATTCTCGATAGTTAGTCCTTTGGTTTCTTTCAAAATAGGAGAGTGATAGTTTAAGGTCCCAAATTGATTGATTGATTGACAATAGTTTAGGGTTTGTTAATTAGAATTCTATAGTTCAGAGACCAAGTTCGAGGGTGAGTGATTGTTTAGGGATCAAATTGAAGGCTTGCTCGCTTTTCTTTTGTTAGTTGTTGTTTGCTTCTGGTTGTTAGCTCCGTCATTCAATTGTTTCTTTGACTTTTCAGATTGATGAATTGCTAGAGTATGCACATGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTAATACATTATCAATCGCAGATCTAGCTATCTGGGCAGGTCTTGCAGGTAAATATATTTTTATGATACCTATACCTATTCATCTTCACCTGTGATACTACTACTACTAAATCTCTTTTAAACAACCTTGTTTAGTGATTGTTTCTCTTCAACCTTAATCTATGAAACTTGATGGTTCATGTCATCTCCATCTACACTATGCCTTTTCAGGTGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCATTAATGGCAGAACATGGTACTACATTAAATGAAGTCACATCAACATATATTGGCAAAAAAGGATCGGGAGAGCCATCTGCAACCAAGCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTGAAGAATGTGAATGGGGATTTTTCTGATAACATTAAGGGAGGAGGCAAGCCTTCGGTAGAGATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCATATTGGACACGCAAAAGCAGCTCTGTTGAACAAGCATTTTGCTGAGCGATACCAAGGTCAGGTTATTTTGCGTTTTGATGATACAAATCCTGAGAAAGAAAAAAAAGAATTTGTGGACAATTTGATAAAAGATGTTGAGATGTTGGGTGTCAAATATGAAAAAATTACATATACATCAGATTACTTCCCTGAGTTGATGGAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCATATGTTGATGACACTCCACGTGAACAAAAGAAAAAGGAGAGAAGGGCTGGCATAGAATCTAAATGCAGAAACCATAGTATAGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCTCGCAGTGTTATGTTCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAAACCAATGCCTCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCCTGTCCATTTGTTGATGCTCGTGAAGGTATCACTCATGCCCTTCGGTCAAGTGAATACCATGATCGTAATGCTCAGTATCACAGGATTCAAGAGGACATGGGAGTTAAGCAAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTTCATGGTTTGTTAAAAATAAAAAAGTTGAATCATGGGATGATCCACGATTTCCTACAGTGCAAGGAATTGTTCGTAGAGGCTTGAAAATTGAAGCGCTAATCCAATTTATTTTTGAACAAGTATGTACAAGGTTTTGCTTTCTTTTATACATCTAAAAGAAAATATGCACTTGAATATAGCGTTTAGTTGTCATACTCTTTTCTTCTTTTTTACTTTTTTTGTTTTATATCCATGCTTAAAATGTTGATCACTGTTCTTGTACAGGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTATGGACGATCAATAAAAAAATTATTGACCCTGTATGTCCCAGACACACTGCGGTCATTGCGGATAAACGTGTATTGTTAACCCTCACTGATGGTCCTGAGAAATCATTTGTCCGCATCATACCTAGGCACAAAAAGTATGAAGCTGCTGGGAATAAAGCTACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCTGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAGTAGATAAGGACCAAGATGGGAATGTCACAGGGTTAAGTGGTGTTTTACATCTTGAAGGATCTGTGAAGACCACAAAACTGAAGCTTACTTGGCTACCTGAGTTAGATGAACTAGTTAGCCTGACATTGATGGAGTTTGATTACCTCATTACGAAGAAAAAGGTATGTGCATGGCTTCTGTTTGTTTCTGTCATTAATAAAGGAAAATATATAATATGTGAACATTTCCACGAGCAATTCACGTGTCCATACGATTTCTACTGACACAACCAATCATGAACCTTTCATGAACCTTCCATATATGTTATAAGAATTTGTTAACGGCTATTATCTGACCTTTCATGAACCTTCCATGGAACTAGTTTTATAGCACCATATTGTCCTTATTATTGTCCATCCTGATCGCATTCTCTTAAAAGTGCATACCCTATGCATAGGCACTTTGGTTCAGTGTTCATTTCATCTACTCATACTTAATATACATCAAATCAAACCTGCTTTCTTCCCTGTTTAAGTTTTTATTTGCTTTGTTTGCAGCTTGAGAAAGGAAAGAATGGGAAAGAAGAGAATATCGATGATGTGCTTAACCCTGTGCTTAACCCTTGCACAAAAAAGGAGATTCTAGCATATGGAGAATCCAATATGCGAAATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCGTCCGGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA
Protein sequence

>MS.gene43378.t1

MDIKTLSFPAATPPLAVIAASKLVGFSSSIDTSLPPDSAPTFLFSNGSKLRGPFVLLRYIGRTATLPNFYGQNVFQTSQIDELLEYAHVLSSGPAFENGCKYIDDYLEKRTFLVGNTLSIADLAIWAGLAGAGKRWESLRKSKKYQNLARWYNSLMAEHGTTLNEVTSTYIGKKGSGEPSATKPKDQPVVKDKVKNVNGDFSDNIKGGGKPSVEIDLPDAEVGKVRLRFAPEPSGYLHIGHAKAALLNKHFAERYQGQVILRFDDTNPEKEKKEFVDNLIKDVEMLGVKYEKITYTSDYFPELMELAEKLISQGKAYVDDTPREQKKKERRAGIESKCRNHSIEENLKLWKEMIAGSERGSQCYVRGKLDMQDPNKSLRDPVYYRCKPMPHHRIGSKYKVYPTYDFACPFVDAREGITHALRSSEYHDRNAQYHRIQEDMGVKQVLIYEFSRLNMVYTLLSKRKLSWFVKNKKVESWDDPRFPTVQGIVRRGLKIEALIQFIFEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADKRVLLTLTDGPEKSFVRIIPRHKKYEAAGNKATTYTKRIWIDYADAESVSAGEEVTLMDWGNAIVKEVDKDQDGNVTGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYLITKKKLEKGKNGKEENIDDVLNPVLNPCTKKEILAYGESNMRNLKRGEVLQLERKGYFRCDVPFVRPSKPIVLFAIPDGRQQTSLK