Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45708.t1 | XP_013456379.1 | 96.9 | 257 | 3 | 1 | 1 | 257 | 1 | 252 | 2.20E-133 | 485 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45708.t1 | O23207 | 64.0 | 272 | 81 | 2 | 1 | 255 | 1 | 272 | 5.8e-90 | 332.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45708.t1 | A0A072UX31 | 96.9 | 257 | 3 | 1 | 1 | 257 | 1 | 252 | 1.6e-133 | 485.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene45708 | 0.810113 | 1.35E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene45708 | 0.844958 | 5.48E-59 | -1.69E-46 |
| MS.gene050238 | MS.gene45708 | 0.807707 | 4.43E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene45708 | 0.825251 | 5.19E-54 | -1.69E-46 |
| MS.gene051121 | MS.gene45708 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene45708 | 0.829128 | 6.12E-55 | -1.69E-46 |
| MS.gene051832 | MS.gene45708 | 0.829844 | 4.10E-55 | -1.69E-46 |
| MS.gene052239 | MS.gene45708 | -0.81393 | 1.99E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene45708 | 0.818679 | 1.73E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene45708 | 0.813617 | 2.34E-51 | -1.69E-46 |
| MS.gene052559 | MS.gene45708 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene45708 | 0.815648 | 8.30E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene45708 | 0.818715 | 1.70E-52 | -1.69E-46 |
| MS.gene054490 | MS.gene45708 | 0.808319 | 3.28E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene45708 | 0.808193 | 3.49E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene45708 | 0.80949 | 1.84E-50 | -1.69E-46 |
| MS.gene055229 | MS.gene45708 | 0.809691 | 1.67E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene45708 | 0.917512 | 4.85E-86 | -1.69E-46 |
| MS.gene056699 | MS.gene45708 | 0.804776 | 1.84E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene45708 | 0.813482 | 2.50E-51 | -1.69E-46 |
| MS.gene058330 | MS.gene45708 | 0.809553 | 1.79E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene45708 | 0.840474 | 8.51E-58 | -1.69E-46 |
| MS.gene05878 | MS.gene45708 | 0.803884 | 2.82E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene45708 | 0.841225 | 5.41E-58 | -1.69E-46 |
| MS.gene059634 | MS.gene45708 | 0.805592 | 1.24E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene45708 | 0.80322 | 3.87E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene45708 | -0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene45708 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene45708 | 0.85375 | 1.94E-61 | -1.69E-46 |
| MS.gene061188 | MS.gene45708 | 0.810189 | 1.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45708.t1 | MTR_4g069250 | 96.887 | 257 | 3 | 1 | 1 | 257 | 1 | 252 | 0.0 | 504 |
| MS.gene45708.t1 | MTR_5g019620 | 65.759 | 257 | 80 | 2 | 1 | 255 | 1 | 251 | 1.42e-120 | 344 |
| MS.gene45708.t1 | MTR_2g081810 | 68.182 | 198 | 62 | 1 | 56 | 253 | 3 | 199 | 7.15e-94 | 275 |
| MS.gene45708.t1 | MTR_8g466030 | 67.677 | 198 | 63 | 1 | 56 | 253 | 3 | 199 | 2.71e-93 | 273 |
| MS.gene45708.t1 | MTR_5g070030 | 64.467 | 197 | 70 | 0 | 57 | 253 | 5 | 201 | 2.50e-92 | 271 |
| MS.gene45708.t1 | MTR_4g091900 | 66.497 | 197 | 65 | 1 | 57 | 253 | 5 | 200 | 1.01e-90 | 267 |
| MS.gene45708.t1 | MTR_4g091900 | 65.608 | 189 | 64 | 1 | 65 | 253 | 1 | 188 | 6.61e-85 | 251 |
| MS.gene45708.t1 | MTR_2g011080 | 60.406 | 197 | 77 | 1 | 57 | 253 | 4 | 199 | 5.63e-81 | 242 |
| MS.gene45708.t1 | MTR_2g011080 | 59.375 | 192 | 77 | 1 | 62 | 253 | 4 | 194 | 4.52e-77 | 232 |
| MS.gene45708.t1 | MTR_2g011080 | 61.745 | 149 | 56 | 1 | 105 | 253 | 1 | 148 | 9.92e-62 | 191 |
| MS.gene45708.t1 | MTR_8g466080 | 68.696 | 115 | 36 | 0 | 139 | 253 | 1 | 115 | 2.45e-51 | 164 |
| MS.gene45708.t1 | MTR_4g091890 | 65.217 | 115 | 36 | 1 | 139 | 253 | 2 | 112 | 6.28e-49 | 157 |
| MS.gene45708.t1 | MTR_8g466110 | 46.825 | 126 | 38 | 5 | 105 | 229 | 1 | 98 | 2.09e-24 | 94.0 |
| MS.gene45708.t1 | MTR_8g466150 | 46.825 | 126 | 38 | 5 | 105 | 229 | 1 | 98 | 2.09e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45708.t1 | AT4G36750 | 64.706 | 272 | 79 | 2 | 1 | 255 | 1 | 272 | 5.05e-122 | 348 |
| MS.gene45708.t1 | AT4G27270 | 67.513 | 197 | 63 | 1 | 57 | 253 | 4 | 199 | 1.05e-94 | 277 |
| MS.gene45708.t1 | AT5G54500 | 67.513 | 197 | 63 | 1 | 57 | 253 | 4 | 199 | 6.32e-93 | 272 |
| MS.gene45708.t1 | AT4G27270 | 66.667 | 189 | 62 | 1 | 65 | 253 | 1 | 188 | 7.90e-89 | 261 |
| MS.gene45708.t1 | AT4G27270 | 66.667 | 189 | 62 | 1 | 65 | 253 | 1 | 188 | 7.90e-89 | 261 |
| MS.gene45708.t1 | AT5G58800 | 57.214 | 201 | 86 | 0 | 57 | 257 | 5 | 205 | 7.02e-84 | 249 |
| MS.gene45708.t1 | AT5G58800 | 57.214 | 201 | 86 | 0 | 57 | 257 | 5 | 205 | 7.02e-84 | 249 |
| MS.gene45708.t1 | AT5G54500 | 66.667 | 159 | 52 | 1 | 57 | 215 | 4 | 161 | 1.88e-71 | 219 |
| MS.gene45708.t1 | AT4G27270 | 69.128 | 149 | 45 | 1 | 105 | 253 | 1 | 148 | 2.06e-71 | 216 |
Find 59 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATCTCTGCTGAGAATT+TGG | 0.169718 | 4.4:+38323684 | MS.gene45708:CDS |
| TTGTTTCATTCTGTGGAATT+TGG | 0.189510 | 4.4:-38323420 | None:intergenic |
| GAGGCTGATGGGTTGTTGTT+TGG | 0.212633 | 4.4:+38323709 | MS.gene45708:CDS |
| GTTCCTATTGGATATACTTT+TGG | 0.228007 | 4.4:+38325179 | MS.gene45708:CDS |
| AGGCTGATGGGTTGTTGTTT+GGG | 0.238388 | 4.4:+38323710 | MS.gene45708:CDS |
| TCCGACGAGGTTTGGTAGTA+TGG | 0.239808 | 4.4:+38323735 | MS.gene45708:CDS |
| CCTCTTACGCGGTAGTTTCT+TGG | 0.265579 | 4.4:-38323867 | None:intergenic |
| AAGCTTGCTGGTGTTCCTGC+TGG | 0.298841 | 4.4:+38323811 | MS.gene45708:CDS |
| AAAGGGGTTGATTCTGTTGA+TGG | 0.375228 | 4.4:+38323571 | MS.gene45708:CDS |
| TTTGAAATGGACTCAATTAG+AGG | 0.383271 | 4.4:+38325212 | MS.gene45708:CDS |
| GGAATGCTCTATGTTCCTAT+TGG | 0.388744 | 4.4:+38325167 | MS.gene45708:CDS |
| AGCTTGCTGGTGTTCCTGCT+GGG | 0.399729 | 4.4:+38323812 | MS.gene45708:CDS |
| GGTTCATTCTCTTCTGTAGT+TGG | 0.415195 | 4.4:-38323382 | None:intergenic |
| CTACTTGTTGTTTCATTCTG+TGG | 0.416265 | 4.4:-38323427 | None:intergenic |
| ATTAGTTCCAACACTTCCTT+TGG | 0.423053 | 4.4:-38323631 | None:intergenic |
| TTTGGGTTTCCGACGAGGTT+TGG | 0.429899 | 4.4:+38323727 | MS.gene45708:CDS |
| GATCTCTGCTGAGAATTTGG+TGG | 0.432973 | 4.4:+38323687 | MS.gene45708:CDS |
| TGGTGCTGGAATGTTTGAAA+TGG | 0.434829 | 4.4:+38325199 | MS.gene45708:CDS |
| GCTAATATAGTCAAGAAGTT+AGG | 0.438947 | 4.4:+38325332 | MS.gene45708:CDS |
| GCACCAAAAGTATATCCAAT+AGG | 0.439235 | 4.4:-38325182 | None:intergenic |
| GAGAATTTGGTGGAGGCTGA+TGG | 0.442575 | 4.4:+38323697 | MS.gene45708:CDS |
| TGGAAGGAACAGAAGCTTGC+TGG | 0.451653 | 4.4:+38323799 | MS.gene45708:CDS |
| GATTCTGTTGATGGAGTTGA+AGG | 0.452417 | 4.4:+38323580 | MS.gene45708:CDS |
| ATTTGGCTTTCAACACTAAG+AGG | 0.467974 | 4.4:-38323403 | None:intergenic |
| TAGTATGGCGGCACAGATGA+AGG | 0.480751 | 4.4:+38323750 | MS.gene45708:CDS |
| GGAACCTCATCATCTTTCTC+AGG | 0.484933 | 4.4:-38323661 | None:intergenic |
| TTTGTTAGTACTGGTACTCA+AGG | 0.489722 | 4.4:+38323838 | MS.gene45708:CDS |
| TCGATTCCACGGGGCAGTTG+TGG | 0.493726 | 4.4:+38323779 | MS.gene45708:CDS |
| GGTGGAACTCCGTATGGTGC+TGG | 0.495286 | 4.4:+38325233 | MS.gene45708:CDS |
| CTCTGCTGAGAATTTGGTGG+AGG | 0.499876 | 4.4:+38323690 | MS.gene45708:CDS |
| TATGGTGCTGGAACCTATGC+AGG | 0.505168 | 4.4:+38325245 | MS.gene45708:CDS |
| TCTTGAACCATCTCCTGCAT+AGG | 0.505315 | 4.4:-38325258 | None:intergenic |
| GTATGGTCATGTGGAATCAT+TGG | 0.514794 | 4.4:+38323534 | MS.gene45708:CDS |
| AGAATTTGGTGGAGGCTGAT+GGG | 0.527716 | 4.4:+38323698 | MS.gene45708:CDS |
| ACAAGCAACTGAAGCTGAGT+TGG | 0.528852 | 4.4:+38325280 | MS.gene45708:CDS |
| GACGCTGCCAAAGGAAGTGT+TGG | 0.543102 | 4.4:+38323624 | MS.gene45708:CDS |
| TTGGCACTTGCTGAATATCA+AGG | 0.565677 | 4.4:+38325299 | MS.gene45708:CDS |
| TTACTCAATGTATGGTCATG+TGG | 0.572787 | 4.4:+38323525 | MS.gene45708:CDS |
| ATTAGAGGTGGAACTCCGTA+TGG | 0.576666 | 4.4:+38325227 | MS.gene45708:CDS |
| ATTCTGTTGATGGAGTTGAA+GGG | 0.590324 | 4.4:+38323581 | MS.gene45708:CDS |
| TTCCACGGGGCAGTTGTGGA+AGG | 0.595264 | 4.4:+38323783 | MS.gene45708:CDS |
| GCATAGGTTCCAGCACCATA+CGG | 0.598095 | 4.4:-38325242 | None:intergenic |
| TGTTGTTTGGGTTTCCGACG+AGG | 0.600440 | 4.4:+38323722 | MS.gene45708:CDS |
| GAAATGGACTCAATTAGAGG+TGG | 0.604389 | 4.4:+38325215 | MS.gene45708:CDS |
| AGTATGGCGGCACAGATGAA+GGG | 0.615125 | 4.4:+38323751 | MS.gene45708:CDS |
| AAATTCTCAGCAGAGATCAA+AGG | 0.615192 | 4.4:-38323682 | None:intergenic |
| TGTCGTAGAGACGCTGCCAA+AGG | 0.620906 | 4.4:+38323615 | MS.gene45708:CDS |
| TTCCTTCCACAACTGCCCCG+TGG | 0.623823 | 4.4:-38323785 | None:intergenic |
| GTTAGTACTGGTACTCAAGG+TGG | 0.625414 | 4.4:+38323841 | MS.gene45708:CDS |
| AGCACCTGAGAAAGATGATG+AGG | 0.634435 | 4.4:+38323657 | MS.gene45708:CDS |
| GCTGGAACCTATGCAGGAGA+TGG | 0.635685 | 4.4:+38325251 | MS.gene45708:CDS |
| TGAATATCAAGGTAGATACA+TGG | 0.639975 | 4.4:+38325310 | MS.gene45708:CDS |
| TAGGAACATAGAGCATTCCA+TGG | 0.644524 | 4.4:-38325163 | None:intergenic |
| AGTACTGGTACTCAAGGTGG+CGG | 0.652659 | 4.4:+38323844 | MS.gene45708:CDS |
| GCCATACTACCAAACCTCGT+CGG | 0.662442 | 4.4:-38323736 | None:intergenic |
| GACGAGGTTTGGTAGTATGG+CGG | 0.666692 | 4.4:+38323738 | MS.gene45708:CDS |
| ATAACACAATTAGTCCACCA+TGG | 0.694726 | 4.4:+38325146 | MS.gene45708:CDS |
| GAACATAGAGCATTCCATGG+TGG | 0.721594 | 4.4:-38325160 | None:intergenic |
| TTGGCAGCGTCTCTACGACA+CGG | 0.741183 | 4.4:-38323612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAATTATAAAAACTTC+AGG | - | chr4.4:38323913-38323932 | None:intergenic | 15.0% |
| !! | ATATAGATATTTGATACATG+TGG | - | chr4.4:38324679-38324698 | None:intergenic | 20.0% |
| !! | TATAGATATTTGATACATGT+GGG | - | chr4.4:38324678-38324697 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTTACTCAATGTA+TGG | + | chr4.4:38323517-38323536 | MS.gene45708:CDS | 20.0% |
| !!! | TATTTTGTTTAGTATGAGTA+CGG | + | chr4.4:38324423-38324442 | MS.gene45708:intron | 20.0% |
| !!! | TTGTTATTAGTTAAATGTTG+TGG | + | chr4.4:38324192-38324211 | MS.gene45708:intron | 20.0% |
| ! | AACTCAAATAGTCAAATTTG+AGG | + | chr4.4:38324713-38324732 | MS.gene45708:intron | 25.0% |
| ! | AATTTCTATTGTTATGTAGC+TGG | + | chr4.4:38325117-38325136 | MS.gene45708:intron | 25.0% |
| ! | ATAGATATTTGATACATGTG+GGG | - | chr4.4:38324677-38324696 | None:intergenic | 25.0% |
| ! | ATATAGAAGTTGGAGTAATA+AGG | + | chr4.4:38324130-38324149 | MS.gene45708:intron | 25.0% |
| ! | CACTGTTATTAAGAGTTATA+AGG | + | chr4.4:38324083-38324102 | MS.gene45708:intron | 25.0% |
| ! | TTAAGAGTTATAAGGTGATT+TGG | + | chr4.4:38324091-38324110 | MS.gene45708:intron | 25.0% |
| !!! | AAAGTGTTTTTAGACTACTT+TGG | + | chr4.4:38324793-38324812 | MS.gene45708:intron | 25.0% |
| !!! | ATATTTTTGCTGTTAGTTGA+AGG | - | chr4.4:38324173-38324192 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTAGTATGAGTAC+GGG | + | chr4.4:38324424-38324443 | MS.gene45708:intron | 25.0% |
| ACAAGCCAATGAATCAATAT+GGG | + | chr4.4:38325011-38325030 | MS.gene45708:intron | 30.0% | |
| ATCTATTCAAAGGTTATGTG+TGG | + | chr4.4:38324376-38324395 | MS.gene45708:intron | 30.0% | |
| GCTAATATAGTCAAGAAGTT+AGG | + | chr4.4:38325332-38325351 | MS.gene45708:CDS | 30.0% | |
| TAACATTAATCCTAAAGTCG+AGG | - | chr4.4:38324322-38324341 | None:intergenic | 30.0% | |
| TGAATATCAAGGTAGATACA+TGG | + | chr4.4:38325310-38325329 | MS.gene45708:CDS | 30.0% | |
| TGGCAAGATCATTGAAAAAA+GGG | + | chr4.4:38323554-38323573 | MS.gene45708:CDS | 30.0% | |
| TTGGCAAGATCATTGAAAAA+AGG | + | chr4.4:38323553-38323572 | MS.gene45708:CDS | 30.0% | |
| TTGTTTCATTCTGTGGAATT+TGG | - | chr4.4:38323423-38323442 | None:intergenic | 30.0% | |
| ! | GTTCCTATTGGATATACTTT+TGG | + | chr4.4:38325179-38325198 | MS.gene45708:CDS | 30.0% |
| ! | TTTGAAATGGACTCAATTAG+AGG | + | chr4.4:38325212-38325231 | MS.gene45708:CDS | 30.0% |
| !! | ATTCTCTAAAGTGCAAAATC+AGG | - | chr4.4:38324527-38324546 | None:intergenic | 30.0% |
| !! | CGACTTTAGGATTAATGTTA+TGG | + | chr4.4:38324322-38324341 | MS.gene45708:intron | 30.0% |
| !! | CTTCTACTCTAAAATTACCT+AGG | - | chr4.4:38324743-38324762 | None:intergenic | 30.0% |
| AAATTAAAGACCCTCTTACG+CGG | - | chr4.4:38323881-38323900 | None:intergenic | 35.0% | |
| AAATTCTCAGCAGAGATCAA+AGG | - | chr4.4:38323685-38323704 | None:intergenic | 35.0% | |
| AATATCTATATCCGTCCATC+TGG | + | chr4.4:38324688-38324707 | MS.gene45708:intron | 35.0% | |
| ACTGGAGGAACTAATTAGTT+GGG | + | chr4.4:38324913-38324932 | MS.gene45708:intron | 35.0% | |
| ATAACACAATTAGTCCACCA+TGG | + | chr4.4:38325146-38325165 | MS.gene45708:CDS | 35.0% | |
| ATTAATGTTATGGCGAACCA+GGG | + | chr4.4:38324332-38324351 | MS.gene45708:intron | 35.0% | |
| ATTAGTTCCAACACTTCCTT+TGG | - | chr4.4:38323634-38323653 | None:intergenic | 35.0% | |
| CAAGCCAATGAATCAATATG+GGG | + | chr4.4:38325012-38325031 | MS.gene45708:intron | 35.0% | |
| CACAAGCCAATGAATCAATA+TGG | + | chr4.4:38325010-38325029 | MS.gene45708:intron | 35.0% | |
| GGCAAGATCATTGAAAAAAG+GGG | + | chr4.4:38323555-38323574 | MS.gene45708:CDS | 35.0% | |
| GTCAAATTTGAGGAATACCT+AGG | + | chr4.4:38324723-38324742 | MS.gene45708:intron | 35.0% | |
| TCATGCCAACCAAATATTTG+TGG | + | chr4.4:38324889-38324908 | MS.gene45708:intron | 35.0% | |
| TGTGATTAAACCTCGACTTT+AGG | + | chr4.4:38324309-38324328 | MS.gene45708:intron | 35.0% | |
| TTACTCAATGTATGGTCATG+TGG | + | chr4.4:38323525-38323544 | MS.gene45708:CDS | 35.0% | |
| TTTGATCTCTGCTGAGAATT+TGG | + | chr4.4:38323684-38323703 | MS.gene45708:CDS | 35.0% | |
| ! | AAGGACTTTTTGGACTATAG+AGG | + | chr4.4:38324964-38324983 | MS.gene45708:intron | 35.0% |
| ! | AGAGTTATAAGGTGATTTGG+TGG | + | chr4.4:38324094-38324113 | MS.gene45708:intron | 35.0% |
| ! | AGTACGGGTGATAGTTATTT+TGG | + | chr4.4:38324439-38324458 | MS.gene45708:intron | 35.0% |
| ! | ATTCTGTTGATGGAGTTGAA+GGG | + | chr4.4:38323581-38323600 | MS.gene45708:CDS | 35.0% |
| ! | GCACCAAAAGTATATCCAAT+AGG | - | chr4.4:38325185-38325204 | None:intergenic | 35.0% |
| ! | GGTATGATTGAAGGACTTTT+TGG | + | chr4.4:38324954-38324973 | MS.gene45708:intron | 35.0% |
| !! | ATTGGATATACTTTTGGTGC+TGG | + | chr4.4:38325185-38325204 | MS.gene45708:CDS | 35.0% |
| !! | ATTTGGCTTTCAACACTAAG+AGG | - | chr4.4:38323406-38323425 | None:intergenic | 35.0% |
| !! | CATATTGATTCATTGGCTTG+TGG | - | chr4.4:38325012-38325031 | None:intergenic | 35.0% |
| !! | CTACTTGTTGTTTCATTCTG+TGG | - | chr4.4:38323430-38323449 | None:intergenic | 35.0% |
| !! | TATAAGGTGATTTGGTGGTT+TGG | + | chr4.4:38324099-38324118 | MS.gene45708:intron | 35.0% |
| !! | TTTGTTAGTACTGGTACTCA+AGG | + | chr4.4:38323838-38323857 | MS.gene45708:CDS | 35.0% |
| !!! | CTCTCATGAGTTTGTTTTGT+GGG | - | chr4.4:38324270-38324289 | None:intergenic | 35.0% |
| !!! | TCTCATGAGTTTGTTTTGTG+GGG | - | chr4.4:38324269-38324288 | None:intergenic | 35.0% |
| AACTAATTAGTTGGGGGTAG+GGG | + | chr4.4:38324921-38324940 | MS.gene45708:intron | 40.0% | |
| CAACCAAATATTTGTGGCAC+TGG | + | chr4.4:38324895-38324914 | MS.gene45708:intron | 40.0% | |
| CACTGGAGGAACTAATTAGT+TGG | + | chr4.4:38324912-38324931 | MS.gene45708:intron | 40.0% | |
| CAGTGCCACAAATATTTGGT+TGG | - | chr4.4:38324897-38324916 | None:intergenic | 40.0% | |
| CCAATGAATCAATATGGGGT+AGG | + | chr4.4:38325016-38325035 | MS.gene45708:intron | 40.0% | |
| CCACAAAACAAACTCATGAG+AGG | + | chr4.4:38324268-38324287 | MS.gene45708:intron | 40.0% | |
| CTGGAGGAACTAATTAGTTG+GGG | + | chr4.4:38324914-38324933 | MS.gene45708:intron | 40.0% | |
| GAACTAATTAGTTGGGGGTA+GGG | + | chr4.4:38324920-38324939 | MS.gene45708:intron | 40.0% | |
| GATTAATGTTATGGCGAACC+AGG | + | chr4.4:38324331-38324350 | MS.gene45708:intron | 40.0% | |
| GGAAGGAGGAATATAGAAGT+TGG | + | chr4.4:38324120-38324139 | MS.gene45708:intron | 40.0% | |
| GGAATGCTCTATGTTCCTAT+TGG | + | chr4.4:38325167-38325186 | MS.gene45708:CDS | 40.0% | |
| GGTTCATTCTCTTCTGTAGT+TGG | - | chr4.4:38323385-38323404 | None:intergenic | 40.0% | |
| GTACTAACAAAAAACCCAGC+AGG | - | chr4.4:38323829-38323848 | None:intergenic | 40.0% | |
| GTATGGTCATGTGGAATCAT+TGG | + | chr4.4:38323534-38323553 | MS.gene45708:CDS | 40.0% | |
| TGGAGGAACTAATTAGTTGG+GGG | + | chr4.4:38324915-38324934 | MS.gene45708:intron | 40.0% | |
| TTAATGTTATGGCGAACCAG+GGG | + | chr4.4:38324333-38324352 | MS.gene45708:intron | 40.0% | |
| ! | AAAGGGGTTGATTCTGTTGA+TGG | + | chr4.4:38323571-38323590 | MS.gene45708:CDS | 40.0% |
| ! | GAAATGGACTCAATTAGAGG+TGG | + | chr4.4:38325215-38325234 | MS.gene45708:CDS | 40.0% |
| ! | GATTCTGTTGATGGAGTTGA+AGG | + | chr4.4:38323580-38323599 | MS.gene45708:CDS | 40.0% |
| ! | TAGGAACATAGAGCATTCCA+TGG | - | chr4.4:38325166-38325185 | None:intergenic | 40.0% |
| ! | TGGTGCTGGAATGTTTGAAA+TGG | + | chr4.4:38325199-38325218 | MS.gene45708:CDS | 40.0% |
| ! | TTGGCACTTGCTGAATATCA+AGG | + | chr4.4:38325299-38325318 | MS.gene45708:CDS | 40.0% |
| !! | CCTACCCCATATTGATTCAT+TGG | - | chr4.4:38325019-38325038 | None:intergenic | 40.0% |
| !!! | CCTCTCATGAGTTTGTTTTG+TGG | - | chr4.4:38324271-38324290 | None:intergenic | 40.0% |
| !!! | GCTGGGTTTTTTGTTAGTAC+TGG | + | chr4.4:38323829-38323848 | MS.gene45708:CDS | 40.0% |
| !!! | GTTGGTGCTTTTTTCTTGCT+TGG | - | chr4.4:38323367-38323386 | None:intergenic | 40.0% |
| ACAAGCAACTGAAGCTGAGT+TGG | + | chr4.4:38325280-38325299 | MS.gene45708:CDS | 45.0% | |
| ACACAAACCACAAGCACATG+TGG | - | chr4.4:38324870-38324889 | None:intergenic | 45.0% | |
| AGCACCTGAGAAAGATGATG+AGG | + | chr4.4:38323657-38323676 | MS.gene45708:CDS | 45.0% | |
| ATTAGAGGTGGAACTCCGTA+TGG | + | chr4.4:38325227-38325246 | MS.gene45708:CDS | 45.0% | |
| CAAAGGGCGGATCTATTCAA+AGG | + | chr4.4:38324366-38324385 | MS.gene45708:intron | 45.0% | |
| CAAGAAACTACCGCGTAAGA+GGG | + | chr4.4:38323868-38323887 | MS.gene45708:intron | 45.0% | |
| CCTCCAGTGCCACAAATATT+TGG | - | chr4.4:38324901-38324920 | None:intergenic | 45.0% | |
| GATCTCTGCTGAGAATTTGG+TGG | + | chr4.4:38323687-38323706 | MS.gene45708:CDS | 45.0% | |
| GGAACCTCATCATCTTTCTC+AGG | - | chr4.4:38323664-38323683 | None:intergenic | 45.0% | |
| GGAACTAATTAGTTGGGGGT+AGG | + | chr4.4:38324919-38324938 | MS.gene45708:intron | 45.0% | |
| TACGATACCACATGTGCTTG+TGG | + | chr4.4:38324860-38324879 | MS.gene45708:intron | 45.0% | |
| TCTTGAACCATCTCCTGCAT+AGG | - | chr4.4:38325261-38325280 | None:intergenic | 45.0% | |
| TGTGGCTCAATTGACAAGAC+AGG | + | chr4.4:38324210-38324229 | MS.gene45708:intron | 45.0% | |
| ! | AAGGGACTTTTCGATTCCAC+GGG | + | chr4.4:38323769-38323788 | MS.gene45708:CDS | 45.0% |
| ! | ACAAGACAGGTTGAGCTTGT+GGG | + | chr4.4:38324223-38324242 | MS.gene45708:intron | 45.0% |
| ! | AGAATTTGGTGGAGGCTGAT+GGG | + | chr4.4:38323698-38323717 | MS.gene45708:CDS | 45.0% |
| ! | ATTTGAGTTCGCCAGATGGA+CGG | - | chr4.4:38324702-38324721 | None:intergenic | 45.0% |
| ! | CAATGGTGGGGTATGATTGA+AGG | + | chr4.4:38324945-38324964 | MS.gene45708:intron | 45.0% |
| ! | CCAAATATTTGTGGCACTGG+AGG | + | chr4.4:38324898-38324917 | MS.gene45708:intron | 45.0% |
| ! | GAACATAGAGCATTCCATGG+TGG | - | chr4.4:38325163-38325182 | None:intergenic | 45.0% |
| ! | GAAGGGACTTTTCGATTCCA+CGG | + | chr4.4:38323768-38323787 | MS.gene45708:CDS | 45.0% |
| ! | GACTATTTGAGTTCGCCAGA+TGG | - | chr4.4:38324706-38324725 | None:intergenic | 45.0% |
| !! | AGGCTGATGGGTTGTTGTTT+GGG | + | chr4.4:38323710-38323729 | MS.gene45708:CDS | 45.0% |
| !! | AGGTGATTTGGTGGTTTGGA+AGG | + | chr4.4:38324103-38324122 | MS.gene45708:intron | 45.0% |
| !! | GTTAGTACTGGTACTCAAGG+TGG | + | chr4.4:38323841-38323860 | MS.gene45708:CDS | 45.0% |
| !! | TGATTTGGTGGTTTGGAAGG+AGG | + | chr4.4:38324106-38324125 | MS.gene45708:intron | 45.0% |
| AGTATGGCGGCACAGATGAA+GGG | + | chr4.4:38323751-38323770 | MS.gene45708:CDS | 50.0% | |
| CAGGGGCGGATCTATTCAAA+GGG | + | chr4.4:38324350-38324369 | MS.gene45708:intron | 50.0% | |
| CCAAGAAACTACCGCGTAAG+AGG | + | chr4.4:38323867-38323886 | MS.gene45708:intron | 50.0% | |
| CCTCTTACGCGGTAGTTTCT+TGG | - | chr4.4:38323870-38323889 | None:intergenic | 50.0% | |
| GCATAGGTTCCAGCACCATA+CGG | - | chr4.4:38325245-38325264 | None:intergenic | 50.0% | |
| GCCATACTACCAAACCTCGT+CGG | - | chr4.4:38323739-38323758 | None:intergenic | 50.0% | |
| TAGTATGGCGGCACAGATGA+AGG | + | chr4.4:38323750-38323769 | MS.gene45708:CDS | 50.0% | |
| TGGAAGGAACAGAAGCTTGC+TGG | + | chr4.4:38323799-38323818 | MS.gene45708:CDS | 50.0% | |
| ! | AGGGACTTTTCGATTCCACG+GGG | + | chr4.4:38323770-38323789 | MS.gene45708:CDS | 50.0% |
| ! | CTCTGCTGAGAATTTGGTGG+AGG | + | chr4.4:38323690-38323709 | MS.gene45708:CDS | 50.0% |
| ! | GACAAGACAGGTTGAGCTTG+TGG | + | chr4.4:38324222-38324241 | MS.gene45708:intron | 50.0% |
| ! | GACGAGGTTTGGTAGTATGG+CGG | + | chr4.4:38323738-38323757 | MS.gene45708:CDS | 50.0% |
| ! | GAGAATTTGGTGGAGGCTGA+TGG | + | chr4.4:38323697-38323716 | MS.gene45708:CDS | 50.0% |
| ! | TATGGTGCTGGAACCTATGC+AGG | + | chr4.4:38325245-38325264 | MS.gene45708:CDS | 50.0% |
| ! | TCCGACGAGGTTTGGTAGTA+TGG | + | chr4.4:38323735-38323754 | MS.gene45708:CDS | 50.0% |
| ! | TGTTGTTTGGGTTTCCGACG+AGG | + | chr4.4:38323722-38323741 | MS.gene45708:CDS | 50.0% |
| ! | TTTGGGTTTCCGACGAGGTT+TGG | + | chr4.4:38323727-38323746 | MS.gene45708:CDS | 50.0% |
| !! | AGTACTGGTACTCAAGGTGG+CGG | + | chr4.4:38323844-38323863 | MS.gene45708:CDS | 50.0% |
| !! | GAGGCTGATGGGTTGTTGTT+TGG | + | chr4.4:38323709-38323728 | MS.gene45708:CDS | 50.0% |
| ATGTTATGGCGAACCAGGGG+CGG | + | chr4.4:38324336-38324355 | MS.gene45708:intron | 55.0% | |
| CCAGGGGCGGATCTATTCAA+AGG | + | chr4.4:38324349-38324368 | MS.gene45708:intron | 55.0% | |
| CCTTTGAATAGATCCGCCCC+TGG | - | chr4.4:38324352-38324371 | None:intergenic | 55.0% | |
| GCTGGAACCTATGCAGGAGA+TGG | + | chr4.4:38325251-38325270 | MS.gene45708:CDS | 55.0% | |
| GGGCGGATCTATTCAAAGGG+CGG | + | chr4.4:38324353-38324372 | MS.gene45708:intron | 55.0% | |
| TAGTTGGGGGTAGGGGTCAA+TGG | + | chr4.4:38324928-38324947 | MS.gene45708:intron | 55.0% | |
| TGTCGTAGAGACGCTGCCAA+AGG | + | chr4.4:38323615-38323634 | MS.gene45708:CDS | 55.0% | |
| TTGGCAGCGTCTCTACGACA+CGG | - | chr4.4:38323615-38323634 | None:intergenic | 55.0% | |
| ! | GACGCTGCCAAAGGAAGTGT+TGG | + | chr4.4:38323624-38323643 | MS.gene45708:CDS | 55.0% |
| !! | AAGCTTGCTGGTGTTCCTGC+TGG | + | chr4.4:38323811-38323830 | MS.gene45708:CDS | 55.0% |
| !! | AGCTTGCTGGTGTTCCTGCT+GGG | + | chr4.4:38323812-38323831 | MS.gene45708:CDS | 55.0% |
| AGGTTGAGCTTGTGGGCGAG+AGG | + | chr4.4:38324230-38324249 | MS.gene45708:intron | 60.0% | |
| GGTGGAACTCCGTATGGTGC+TGG | + | chr4.4:38325233-38325252 | MS.gene45708:CDS | 60.0% | |
| TCGATTCCACGGGGCAGTTG+TGG | + | chr4.4:38323779-38323798 | MS.gene45708:CDS | 60.0% | |
| TGGGGGTAGGGGTCAATGGT+GGG | + | chr4.4:38324932-38324951 | MS.gene45708:intron | 60.0% | |
| TTCCACGGGGCAGTTGTGGA+AGG | + | chr4.4:38323783-38323802 | MS.gene45708:CDS | 60.0% | |
| TTCCTTCCACAACTGCCCCG+TGG | - | chr4.4:38323788-38323807 | None:intergenic | 60.0% | |
| TTGGGGGTAGGGGTCAATGG+TGG | + | chr4.4:38324931-38324950 | MS.gene45708:intron | 60.0% | |
| GGGGGTAGGGGTCAATGGTG+GGG | + | chr4.4:38324933-38324952 | MS.gene45708:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38323340 | 38325367 | 38323340 | ID=MS.gene45708 |
| chr4.4 | mRNA | 38323340 | 38325367 | 38323340 | ID=MS.gene45708.t1;Parent=MS.gene45708 |
| chr4.4 | exon | 38323340 | 38323881 | 38323340 | ID=MS.gene45708.t1.exon1;Parent=MS.gene45708.t1 |
| chr4.4 | CDS | 38323340 | 38323881 | 38323340 | ID=cds.MS.gene45708.t1;Parent=MS.gene45708.t1 |
| chr4.4 | exon | 38325136 | 38325367 | 38325136 | ID=MS.gene45708.t1.exon2;Parent=MS.gene45708.t1 |
| chr4.4 | CDS | 38325136 | 38325367 | 38325136 | ID=cds.MS.gene45708.t1;Parent=MS.gene45708.t1 |
| Gene Sequence |
| Protein sequence |
