AlfalfaGEDB | MS.gene45708

M. sativa cultivar XinJiangDaYe / MS.gene45708

KEGG: K03809
GO: GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0010181 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF03358.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45708.t1	XP_013456379.1	96.9	257	3	1	1	257	1	252	2.20E-133	485

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45708.t1	O23207	64.0	272	81	2	1	255	1	272	5.8e-90	332.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45708.t1	A0A072UX31	96.9	257	3	1	1	257	1	252	1.6e-133	485.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049227	MS.gene45708	0.810113	1.35E-50	-1.69E-46
MS.gene049807	MS.gene45708	0.844958	5.48E-59	-1.69E-46
MS.gene050238	MS.gene45708	0.807707	4.43E-50	-1.69E-46
MS.gene050414	MS.gene45708	0.825251	5.19E-54	-1.69E-46
MS.gene051121	MS.gene45708	0.801588	8.39E-49	-1.69E-46
MS.gene051699	MS.gene45708	0.829128	6.12E-55	-1.69E-46
MS.gene051832	MS.gene45708	0.829844	4.10E-55	-1.69E-46
MS.gene052239	MS.gene45708	-0.81393	1.99E-51	-1.69E-46
MS.gene052307	MS.gene45708	0.818679	1.73E-52	-1.69E-46
MS.gene052533	MS.gene45708	0.813617	2.34E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45708.t1	MTR_4g069250	96.887	257	3	1	1	257	1	252	0.0	504
MS.gene45708.t1	MTR_5g019620	65.759	257	80	2	1	255	1	251	1.42e-120	344
MS.gene45708.t1	MTR_2g081810	68.182	198	62	1	56	253	3	199	7.15e-94	275
MS.gene45708.t1	MTR_8g466030	67.677	198	63	1	56	253	3	199	2.71e-93	273
MS.gene45708.t1	MTR_5g070030	64.467	197	70	0	57	253	5	201	2.50e-92	271
MS.gene45708.t1	MTR_4g091900	66.497	197	65	1	57	253	5	200	1.01e-90	267
MS.gene45708.t1	MTR_4g091900	65.608	189	64	1	65	253	1	188	6.61e-85	251
MS.gene45708.t1	MTR_2g011080	60.406	197	77	1	57	253	4	199	5.63e-81	242
MS.gene45708.t1	MTR_2g011080	59.375	192	77	1	62	253	4	194	4.52e-77	232
MS.gene45708.t1	MTR_2g011080	61.745	149	56	1	105	253	1	148	9.92e-62	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45708.t1	AT4G36750	64.706	272	79	2	1	255	1	272	5.05e-122	348
MS.gene45708.t1	AT4G27270	67.513	197	63	1	57	253	4	199	1.05e-94	277
MS.gene45708.t1	AT5G54500	67.513	197	63	1	57	253	4	199	6.32e-93	272
MS.gene45708.t1	AT4G27270	66.667	189	62	1	65	253	1	188	7.90e-89	261
MS.gene45708.t1	AT4G27270	66.667	189	62	1	65	253	1	188	7.90e-89	261
MS.gene45708.t1	AT5G58800	57.214	201	86	0	57	257	5	205	7.02e-84	249
MS.gene45708.t1	AT5G58800	57.214	201	86	0	57	257	5	205	7.02e-84	249
MS.gene45708.t1	AT5G54500	66.667	159	52	1	57	215	4	161	1.88e-71	219
MS.gene45708.t1	AT4G27270	69.128	149	45	1	105	253	1	148	2.06e-71	216

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Find 59 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGGTTGATTCTGTTGA+TGG	0.375228	4.4:+38323571	MS.gene45708:CDS
AAATTCTCAGCAGAGATCAA+AGG	0.615192	4.4:-38323682	None:intergenic
AAGCTTGCTGGTGTTCCTGC+TGG	0.298841	4.4:+38323811	MS.gene45708:CDS
ACAAGCAACTGAAGCTGAGT+TGG	0.528852	4.4:+38325280	MS.gene45708:CDS
AGAATTTGGTGGAGGCTGAT+GGG	0.527716	4.4:+38323698	MS.gene45708:CDS
AGCACCTGAGAAAGATGATG+AGG	0.634435	4.4:+38323657	MS.gene45708:CDS
AGCTTGCTGGTGTTCCTGCT+GGG	0.399729	4.4:+38323812	MS.gene45708:CDS
AGGCTGATGGGTTGTTGTTT+GGG	0.238388	4.4:+38323710	MS.gene45708:CDS
AGTACTGGTACTCAAGGTGG+CGG	0.652659	4.4:+38323844	MS.gene45708:CDS
AGTATGGCGGCACAGATGAA+GGG	0.615125	4.4:+38323751	MS.gene45708:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGCCAATGAATCAATAT+GGG	+	chr4.4:38325011-38325030	MS.gene45708:intron	30.0%
ATCTATTCAAAGGTTATGTG+TGG	+	chr4.4:38324376-38324395	MS.gene45708:intron	30.0%
GCTAATATAGTCAAGAAGTT+AGG	+	chr4.4:38325332-38325351	MS.gene45708:CDS	30.0%
TAACATTAATCCTAAAGTCG+AGG	-	chr4.4:38324322-38324341	None:intergenic	30.0%
TGAATATCAAGGTAGATACA+TGG	+	chr4.4:38325310-38325329	MS.gene45708:CDS	30.0%
TGGCAAGATCATTGAAAAAA+GGG	+	chr4.4:38323554-38323573	MS.gene45708:CDS	30.0%
TTGGCAAGATCATTGAAAAA+AGG	+	chr4.4:38323553-38323572	MS.gene45708:CDS	30.0%
TTGTTTCATTCTGTGGAATT+TGG	-	chr4.4:38323423-38323442	None:intergenic	30.0%
AAATTAAAGACCCTCTTACG+CGG	-	chr4.4:38323881-38323900	None:intergenic	35.0%
AAATTCTCAGCAGAGATCAA+AGG	-	chr4.4:38323685-38323704	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	38323340	38325367	38323340	ID=MS.gene45708
chr4.4	mRNA	38323340	38325367	38323340	ID=MS.gene45708.t1;Parent=MS.gene45708
chr4.4	exon	38323340	38323881	38323340	ID=MS.gene45708.t1.exon1;Parent=MS.gene45708.t1
chr4.4	CDS	38323340	38323881	38323340	ID=cds.MS.gene45708.t1;Parent=MS.gene45708.t1
chr4.4	exon	38325136	38325367	38325136	ID=MS.gene45708.t1.exon2;Parent=MS.gene45708.t1
chr4.4	CDS	38325136	38325367	38325136	ID=cds.MS.gene45708.t1;Parent=MS.gene45708.t1

Gene Sequence

>MS.gene45708

ATGGGGAAAGGAAGAGGTTGCATACCAAGCAAGAAAAAAGCACCAACTACAGAAGAGAATGAACCTCTTAGTGTTGAAAGCCAAATTCCACAGAATGAAACAACAAGTAGAAGCATAGATGTAGCAACAATAGATGTAGCAACAACATCAGAAGCAGTGAAAAAGTTGAAAGTTTACATTGTTTTTTACTCAATGTATGGTCATGTGGAATCATTGGCAAGATCATTGAAAAAAGGGGTTGATTCTGTTGATGGAGTTGAAGGGTTTTTGTACCGTGTCGTAGAGACGCTGCCAAAGGAAGTGTTGGAACTAATGAAAGCACCTGAGAAAGATGATGAGGTTCCTTTGATCTCTGCTGAGAATTTGGTGGAGGCTGATGGGTTGTTGTTTGGGTTTCCGACGAGGTTTGGTAGTATGGCGGCACAGATGAAGGGACTTTTCGATTCCACGGGGCAGTTGTGGAAGGAACAGAAGCTTGCTGGTGTTCCTGCTGGGTTTTTTGTTAGTACTGGTACTCAAGGTGGCGGCCAAGAAACTACCGCGTAAGAGGGTCTTTAATTTTTCTGTTTTCCTGAAGTTTTTATAATTTTCTTTGATTCAATTTCTAAAGTTTATATGATTATAATTTGATTCATTCTTCACAAGATTGAAAAAGTTGTTCTAAAGTAGATTTTGCATAAATTGTTATATTGAGATTATATGCATATATCATGATCATTATTATTACTTGTTAGATTAGAATACACTGTTATTAAGAGTTATAAGGTGATTTGGTGGTTTGGAAGGAGGAATATAGAAGTTGGAGTAATAAGGAAGTCACACATTTAACTCCTTCAACTAACAGCAAAAATATTGTTATTAGTTAAATGTTGTGGCTCAATTGACAAGACAGGTTGAGCTTGTGGGCGAGAGGATGATGATTTGATCCCCACAAAACAAACTCATGAGAGGAGCTATAAGCTTTTTAAGTGTGATTAAACCTCGACTTTAGGATTAATGTTATGGCGAACCAGGGGCGGATCTATTCAAAGGGCGGATCTATTCAAAGGTTATGTGTGGCTAAAGCTACACATTCAACTGCTCTATTTTGTTTAGTATGAGTACGGGTGATAGTTATTTTGGTCTTTAAATGTGTAACGAATAATCACGATAGTCATTCAGTGTATTTAAATTCTAAAATAGTTCCTGATTTTGCACTTTAGAGAATATTTTGATACAATCAGAGAATATTTTAAAATTTACAATCACGATAGTCATGTTAGAGAATATTTTGATTAACGAAATGTACAATCAGAGACAATTTAAAATTTTGATACATTGAGAGACTATTTTAGCCCCACATGTATCAAATATCTATATCCGTCCATCTGGCGAACTCAAATAGTCAAATTTGAGGAATACCTAGGTAATTTTAGAGTAGAAGACACTAATTACATATATTTAAAAAGAACATAAAGTGTTTTTAGACTACTTTGGAATCACTTAAAAGTGAAAATTTGTTGCAAAACGAGTAAGTTTTGTACGATACCACATGTGCTTGTGGTTTGTGTCATGCCAACCAAATATTTGTGGCACTGGAGGAACTAATTAGTTGGGGGTAGGGGTCAATGGTGGGGTATGATTGAAGGACTTTTTGGACTATAGAGGATTTTAATTTGTAGCAAAATTTCCACAAGCCAATGAATCAATATGGGGTAGGAATAAATAGATATTATTATGTTGATAGCAATGTATTATTGTGACTAGTAATAGTAATATTTATATGATTAATTTATGTAATTTCTATTGTTATGTAGCTGGACAGCAATAACACAATTAGTCCACCATGGAATGCTCTATGTTCCTATTGGATATACTTTTGGTGCTGGAATGTTTGAAATGGACTCAATTAGAGGTGGAACTCCGTATGGTGCTGGAACCTATGCAGGAGATGGTTCAAGACAAGCAACTGAAGCTGAGTTGGCACTTGCTGAATATCAAGGTAGATACATGGCTAATATAGTCAAGAAGTTAGGCCAGAAAAGCTAG

Protein sequence

>MS.gene45708.t1

MGKGRGCIPSKKKAPTTEENEPLSVESQIPQNETTSRSIDVATIDVATTSEAVKKLKVYIVFYSMYGHVESLARSLKKGVDSVDGVEGFLYRVVETLPKEVLELMKAPEKDDEVPLISAENLVEADGLLFGFPTRFGSMAAQMKGLFDSTGQLWKEQKLAGVPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLYVPIGYTFGAGMFEMDSIRGGTPYGAGTYAGDGSRQATEAELALAEYQGRYMANIVKKLGQKS