AlfalfaGEDB | MS.gene45736

M. sativa cultivar XinJiangDaYe / MS.gene45736

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008144 GO:0019825 GO:0020037 GO:0036094 GO:0046906 GO:0048037 GO:0097159 GO:1901363
PFAM: PF00042.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45736.t1	XP_013456345.1	96.3	351	13	0	1	351	1	351	1.10E-159	572.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45736.t1	Q9FVL0	81.7	142	26	0	14	155	9	150	6.5e-60	232.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45736.t1	A0A072ULZ1	96.3	351	13	0	1	351	1	351	8.0e-160	572.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene45736	0.802021	6.84E-49	-1.69E-46
MS.gene049232	MS.gene45736	0.853552	2.22E-61	-1.69E-46
MS.gene049285	MS.gene45736	0.809098	2.24E-50	-1.69E-46
MS.gene049320	MS.gene45736	0.800859	1.18E-48	-1.69E-46
MS.gene05010	MS.gene45736	0.82948	5.03E-55	-1.69E-46
MS.gene050333	MS.gene45736	0.802681	5.00E-49	-1.69E-46
MS.gene050504	MS.gene45736	0.809175	2.15E-50	-1.69E-46
MS.gene050518	MS.gene45736	0.809042	2.30E-50	-1.69E-46
MS.gene050772	MS.gene45736	0.801251	9.83E-49	-1.69E-46
MS.gene050868	MS.gene45736	0.803675	3.11E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45736.t1	MTR_4g068870	96.296	351	13	0	1	351	1	351	0.0	686
MS.gene45736.t1	MTR_4g068870	94.017	351	14	1	1	351	1	344	0.0	662
MS.gene45736.t1	MTR_0026s0210	92.877	351	23	1	1	351	1	349	0.0	660
MS.gene45736.t1	MTR_4g068870	97.315	298	8	0	54	351	1	298	0.0	593
MS.gene45736.t1	MTR_4g068870	85.965	171	18	3	1	170	124	289	1.40e-96	289
MS.gene45736.t1	MTR_4g068870	97.209	215	6	0	137	351	1	215	6.35e-153	429
MS.gene45736.t1	MTR_4g068870	85.965	171	18	3	1	170	41	206	1.66e-97	288
MS.gene45736.t1	MTR_4g068860	82.550	149	26	0	185	333	9	157	1.64e-84	253
MS.gene45736.t1	MTR_4g068860	81.208	149	28	0	14	162	9	157	7.26e-83	249
MS.gene45736.t1	MTR_4g068860	80.909	110	21	0	14	123	9	118	3.34e-58	185

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45736.t1	AT2G16060	71.242	153	44	9	161	4	156	5.93e-76	231
MS.gene45736.t1	AT2G16060	70.513	156	46	177	332	1	156	1.61e-75	230
MS.gene45736.t1	AT3G10520	53.247	154	72	10	163	2	155	1.25e-52	171
MS.gene45736.t1	AT3G10520	56.667	150	65	185	334	6	155	1.50e-52	171

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Find 54 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCAAATGTTCCTT+TGG	0.354441	4.4:+38615351	MS.gene45736:CDS
AACATAGTCTAATTAAGAGG+AGG	0.573065	4.4:-38616121	None:intergenic
AAGAAGCAATACCTGAAATG+TGG	0.626542	4.4:+38613932	MS.gene45736:CDS
AAGAAGCATTACCTGAGATG+TGG	0.630182	4.4:+38615980	MS.gene45736:CDS
AAGCTCTAGTCGTGAAGTCA+TGG	0.537512	4.4:+38615137	MS.gene45736:CDS
AAGCTCTAGTGCTAAAGTCA+TGG	0.546385	4.4:+38612842	MS.gene45736:CDS
AATGAAAACATTTGCTTAGC+TGG	0.335061	4.4:-38613132	None:intergenic
AATGAGAACAATTGCTTAGC+TGG	0.398732	4.4:-38615325	None:intergenic
AATGCAATCAAGAACAACTC+TGG	0.563556	4.4:+38615160	MS.gene45736:CDS
AATTCTGATTGTTAGAATAC+TGG	0.324830	4.4:+38613098	MS.gene45736:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCATGAGTGATACTCAAT+TGG	-	chr4.4:38613077-38613096	None:intergenic	30.0%
AATGAAAACATTTGCTTAGC+TGG	-	chr4.4:38613135-38613154	None:intergenic	30.0%
AGGGCTCTTATATCATTTAT+TGG	+	chr4.4:38614398-38614417	MS.gene45736:intron	30.0%
ATATGAGAGATGTTATCTAC+AGG	-	chr4.4:38614715-38614734	None:intergenic	30.0%
CAATGTCAAGAAAACTTACA+AGG	+	chr4.4:38614330-38614349	MS.gene45736:intron	30.0%
GAAAGATTCAAATGTTCCTT+TGG	+	chr4.4:38613158-38613177	MS.gene45736:CDS	30.0%
GAATCAAACTTGAAGAAGTT+AGG	+	chr4.4:38615597-38615616	MS.gene45736:CDS	30.0%
TACTAATAGTACAAGTTACG+AGG	-	chr4.4:38614103-38614122	None:intergenic	30.0%
TCAACTAGGTCAAGTAATAT+GGG	-	chr4.4:38613399-38613418	None:intergenic	30.0%
TCTACAGGAAAATACTTGAA+TGG	-	chr4.4:38614700-38614719	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	38612787	38616131	38612787	ID=MS.gene45736
chr4.4	mRNA	38612787	38616131	38612787	ID=MS.gene45736.t1;Parent=MS.gene45736
chr4.4	exon	38612787	38612914	38612787	ID=MS.gene45736.t1.exon1;Parent=MS.gene45736.t1
chr4.4	CDS	38612787	38612914	38612787	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1
chr4.4	exon	38613113	38613227	38613113	ID=MS.gene45736.t1.exon2;Parent=MS.gene45736.t1
chr4.4	CDS	38613113	38613227	38613113	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1
chr4.4	exon	38613674	38613790	38613674	ID=MS.gene45736.t1.exon3;Parent=MS.gene45736.t1
chr4.4	CDS	38613674	38613790	38613674	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1
chr4.4	exon	38613901	38614063	38613901	ID=MS.gene45736.t1.exon4;Parent=MS.gene45736.t1
chr4.4	CDS	38613901	38614063	38613901	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1
chr4.4	exon	38615092	38615209	38615092	ID=MS.gene45736.t1.exon5;Parent=MS.gene45736.t1
chr4.4	CDS	38615092	38615209	38615092	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1
chr4.4	exon	38615306	38615420	38615306	ID=MS.gene45736.t1.exon6;Parent=MS.gene45736.t1
chr4.4	CDS	38615306	38615420	38615306	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1
chr4.4	exon	38615546	38615662	38615546	ID=MS.gene45736.t1.exon7;Parent=MS.gene45736.t1
chr4.4	CDS	38615546	38615662	38615546	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1
chr4.4	exon	38615949	38616131	38615949	ID=MS.gene45736.t1.exon8;Parent=MS.gene45736.t1
chr4.4	CDS	38615949	38616131	38615949	ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1

Gene Sequence

>MS.gene45736

ATGGAAGAGAACAAGAAAACTGTGGATGGAAGTGTTTGTTTCACAGAAGAGCAAGAAGCTCTAGTGCTAAAGTCATGGAATGCAATGAAGAAAAATTCTGGGGACCTGAGTCTCAACTTTTTCACAAAGTAAGATATTTCATTTCATTAATTAATTTTTCAACTCTTCCGTTAATTATATTAATTAATTTTCAGCTTGTAAGGTAACTAGACATTTGTCAAAAAAAAAAAAGGTAACTAGACATTTTTTTTTTTTTGAAGGAAAAAGGTAACTAGACATGTTTTTGACCAATTGAGTATCACTCATGATTTAATTCTGATTGTTAGAATACTGGAGATTGCTCCACCAGCTAAGCAAATGTTTTCATTCTTGAAAGATTCAAATGTTCCTTTGGAGCAAAATCCTAAGCTCAAGCCACATGCTATGTCTGTCTTTCTCATGGTAAGCTTAACAATTAACATCATCTAATTAGTATAACTGAGGTTTAGACATGACCTTATGACTTAAATTAGAAAAATAAAATAAGTTCACAGTTAAACTATTATGATATTTTCAATAAACTATAAATTAATTACATTACTTGTATCTCTTATTTGGTACTCCCTCCGTCCCATATTACTTGACCTAGTTGACTCTGTCACGTGTGCCAATGCACAATTTTAAACTTAAATTTCTTTAATAATCTAGTAGAAAAAATTACGAAAATTTGATATTTTTAAAAATATTAATCGAGACGAATCTAACATCTTATATGCTATATTTTGTTTTTATATATTAGTAGAAAAATAGAGTCAAAGCATGTTACATGAATAGTGCAAATATTCTAAATAGGTCAAGTAATATGGGACGGAGGGAGTAGAATTTATTGTGCTTTTGTTATTGTATAGACTTGTGAATCAGCAGTTCAATTGCGTAAGGCTGGTAAAGTCACAGTGAGAGAATCAAATTTGAAGAAGTTAGGTGCCACTCATTTCAAAACTGGTGTAAAAGATGAGCATTTTGAGGTAATAACATGCAACCTTTCAATATTACTAGTACTATGAATTATGAGAGATGTCCTTTTGTAGAAGACTAATGTAATGTATGATTTAATTATTATTTCATATTTGTTAAGGTAACAAAACAAGCTCTTTTGGAGACAATAGAAGAAGCAATACCTGAAATGTGGTCTCTAGCTATGAAAAATGCATGGGCAGAAGCTCATGATCAGCTGGCCAATGCTATCAAAGCTGAAATGAAAGAAGCTCATGATCAACTGGACAATGCCAATTTGATAAGTAATTTTAAATATAATTGGATGTCTAATTCATTTGCCTCGTAACTTGTACTATTAGTAGGGTAGCCTGCTCTGCAATGGTTCGCAACTTAATCGAAAAGAGAGAGCGTGTAGGAGCAAGAAGATATCTCGCATATCCAATTTTTATTATAGTCGGTGTTAGACTAACCACTCACACTTGATATCAACAATCTCTCTCTCAATTGTATTCTTCCATACCCTACACTTGCATTGCCGTTAAATCCAAAGAAAAACACCTCTTGACTACAATGTCAAGAAAACTTACAAGGATCAAATAGAGCAGGATCTACTCTCGCTCTTCACCAAGTTGAATTAGGGCTCTTATATCATTTATTGGAGAGTCCATAGAAGCGTCAGGAGCAACAACAAACCAATGATTCATAACCACCAAAAGATTATACAACACATCTCCAACCAAAACCATAAAATATTTTTTATATAGACCACAAACAATTCTTGTGTGGTCACAATACTTTGGACAGAAGATTTTGACACTAAAAAAATGAAAAAAAGTAGAAAGAGAAAAGAGTTAAATAATGTATGTTTTTCAAATAATTTAATAATATGTATTTTTAAGCATGTGGGACCAAATCTTGTGTCCAAAATTTTATATCCATTCAAGTATTTTCCTGTAGATAACATCTCTCATATATCAACTATTTAACTCATTCATTGTCATAGTCAATTTAGAGCTAACTAATCACACTTTAACCAAAATATATGGTAGTGTATATGTACTCTCTAACCTGCAAAAACTTAAAAAGAAAAACTATTTAAAAAACATAGACATGTTTTAAAATTTGAAGAAATATAATATTAATACTCCTAATTTGTTGGAAAAAGCACAAGCTGACAAATTGCAAAATAACTCCCCATTGGCACGAAGAGCCAACTCCATCTTTAATCAATGAGTGAATCTCACTATACAATAAAAACTGCACCATAGCACAAACTACAAAATCAACAATATCTTAATTATCCATTGTCACTATTATTCTTAATCAGCAGTTAACATGGAAGAGAACACAGGCAGTTGTTTCACAGAGGAACAAGAAGCTCTAGTCGTGAAGTCATGGAATGCAATCAAGAACAACTCTGGAGATCTGAGTCTCAAGTTTTTCAAGAAGTAAGTCATTAATTTCATTTTTCATTTAGGTTTGTAATATATAACACTATTATTTAACACAACATTATTTTTGAACAATTGATTATGACATGTTAGAATTCTGGAGATTGCTCCACCAGCTAAGCAATTGTTCTCATTCTTAAAAGATTCAAATGTTCCTTTGGAGCAAAATCCTAAGCTCAAGCCTCATGCCATGTCTGTCTTTCTCATGGTAACTTTGCTTAACACTTAGCATCCATTTGTTTTTTGATTAATTACAATTAATTATGCTCTAAGCTATTTGTGTCTCTTAAATTGTTATATCGATATAATATGCTTAATTTTGTTGTTTTGTAGACATGTGAATCAGCAGTTCAATTGAGAAATGCTGGTAAAGTAACTGTTAGAGAATCAAACTTGAAGAAGTTAGGTGCCACTCATTTCAAAACTGGTGTAAAAGATGAGCATTTTGAGGTAATACTAACATACTACTATGGTTGACACAATGTTAGGTGAGCCGTGCATCCGTGCGAATGTACAAGTCTTTTACTAGTATATATTGACAAGGAAAAAAAGCAACGTGTATATTTGAAATCATGATGGCGACATCACGATTTTGTCAAACTCACCACGAACCCAAATATACACAATATGAGTTTAATCTTTTTAATTATGGAGTATAATATATAGACCGTACTACTTTTCTAGAAGAACAATTTATAATGTAAACTAATTATTTTTTATTGTTTCGTTATGTAAGGTAACAAAGCAAGCCCTTTTGGAGACCATAAAAGAAGCATTACCTGAGATGTGGTCACCGGCTATGGAAAATGCATGGGGAGAAGCCCATGATCAGCTGGCCAATGCCATCAAAGCTGAGATGAAAAAAGCTGATCATGATCATCAGACCAATGTTGAAGATAAATCCAAACCCTCCTCTTAA

Protein sequence

>MS.gene45736.t1

MEENKKTVDGSVCFTEEQEALVLKSWNAMKKNSGDLSLNFFTKILEIAPPAKQMFSFLKDSNVPLEQNPKLKPHAMSVFLMTCESAVQLRKAGKVTVRESNLKKLGATHFKTGVKDEHFEVTKQALLETIEEAIPEMWSLAMKNAWAEAHDQLANAIKAEMKEAHDQLDNANLIINMEENTGSCFTEEQEALVVKSWNAIKNNSGDLSLKFFKKILEIAPPAKQLFSFLKDSNVPLEQNPKLKPHAMSVFLMTCESAVQLRNAGKVTVRESNLKKLGATHFKTGVKDEHFEVTKQALLETIKEALPEMWSPAMENAWGEAHDQLANAIKAEMKKADHDHQTNVEDKSKPSS