Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45736.t1 | XP_013456345.1 | 96.3 | 351 | 13 | 0 | 1 | 351 | 1 | 351 | 1.10E-159 | 572.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45736.t1 | Q9FVL0 | 81.7 | 142 | 26 | 0 | 14 | 155 | 9 | 150 | 6.5e-60 | 232.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45736.t1 | A0A072ULZ1 | 96.3 | 351 | 13 | 0 | 1 | 351 | 1 | 351 | 8.0e-160 | 572.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene45736 | 0.802021 | 6.84E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene45736 | 0.853552 | 2.22E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene45736 | 0.809098 | 2.24E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene45736 | 0.800859 | 1.18E-48 | -1.69E-46 |
| MS.gene05010 | MS.gene45736 | 0.82948 | 5.03E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene45736 | 0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene45736 | 0.809175 | 2.15E-50 | -1.69E-46 |
| MS.gene050518 | MS.gene45736 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene45736 | 0.801251 | 9.83E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene45736 | 0.803675 | 3.11E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene45736 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene050876 | MS.gene45736 | 0.848468 | 6.01E-60 | -1.69E-46 |
| MS.gene050904 | MS.gene45736 | 0.836457 | 9.25E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene45736 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene45736 | 0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene45736 | 0.814632 | 1.40E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene45736 | 0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene055634 | MS.gene45736 | 0.813136 | 2.98E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene45736 | 0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene055751 | MS.gene45736 | 0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene055776 | MS.gene45736 | 0.820905 | 5.36E-53 | -1.69E-46 |
| MS.gene055849 | MS.gene45736 | 0.84098 | 6.27E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene45736 | 0.823467 | 1.36E-53 | -1.69E-46 |
| MS.gene056510 | MS.gene45736 | 0.806042 | 9.97E-50 | -1.69E-46 |
| MS.gene057687 | MS.gene45736 | 0.804454 | 2.14E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene45736 | 0.81157 | 6.55E-51 | -1.69E-46 |
| MS.gene058719 | MS.gene45736 | 0.80036 | 1.50E-48 | -1.69E-46 |
| MS.gene058773 | MS.gene45736 | 0.820969 | 5.18E-53 | -1.69E-46 |
| MS.gene058774 | MS.gene45736 | 0.802048 | 6.75E-49 | -1.69E-46 |
| MS.gene058775 | MS.gene45736 | 0.807887 | 4.06E-50 | -1.69E-46 |
| MS.gene058777 | MS.gene45736 | 0.801219 | 9.98E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene45736 | 0.813438 | 2.56E-51 | -1.69E-46 |
| MS.gene059837 | MS.gene45736 | 0.834442 | 2.99E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene45736 | 0.820746 | 5.83E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene45736 | 0.852791 | 3.66E-61 | -1.69E-46 |
| MS.gene060762 | MS.gene45736 | 0.812183 | 4.82E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene45736 | 0.80696 | 6.38E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene45736 | 0.800788 | 1.22E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene45736 | 0.81872 | 1.69E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45736.t1 | MTR_4g068870 | 96.296 | 351 | 13 | 0 | 1 | 351 | 1 | 351 | 0.0 | 686 |
| MS.gene45736.t1 | MTR_4g068870 | 94.017 | 351 | 14 | 1 | 1 | 351 | 1 | 344 | 0.0 | 662 |
| MS.gene45736.t1 | MTR_0026s0210 | 92.877 | 351 | 23 | 1 | 1 | 351 | 1 | 349 | 0.0 | 660 |
| MS.gene45736.t1 | MTR_4g068870 | 97.315 | 298 | 8 | 0 | 54 | 351 | 1 | 298 | 0.0 | 593 |
| MS.gene45736.t1 | MTR_4g068870 | 85.965 | 171 | 18 | 3 | 1 | 170 | 124 | 289 | 1.40e-96 | 289 |
| MS.gene45736.t1 | MTR_4g068870 | 97.209 | 215 | 6 | 0 | 137 | 351 | 1 | 215 | 6.35e-153 | 429 |
| MS.gene45736.t1 | MTR_4g068870 | 85.965 | 171 | 18 | 3 | 1 | 170 | 41 | 206 | 1.66e-97 | 288 |
| MS.gene45736.t1 | MTR_4g068860 | 82.550 | 149 | 26 | 0 | 185 | 333 | 9 | 157 | 1.64e-84 | 253 |
| MS.gene45736.t1 | MTR_4g068860 | 81.208 | 149 | 28 | 0 | 14 | 162 | 9 | 157 | 7.26e-83 | 249 |
| MS.gene45736.t1 | MTR_4g068860 | 80.909 | 110 | 21 | 0 | 14 | 123 | 9 | 118 | 3.34e-58 | 185 |
| MS.gene45736.t1 | MTR_4g068860 | 80.909 | 110 | 21 | 0 | 185 | 294 | 9 | 118 | 2.14e-57 | 182 |
| MS.gene45736.t1 | MTR_5g081030 | 47.973 | 148 | 73 | 2 | 14 | 161 | 3 | 146 | 7.62e-38 | 133 |
| MS.gene45736.t1 | MTR_5g081030 | 47.297 | 148 | 74 | 2 | 185 | 332 | 3 | 146 | 1.23e-36 | 129 |
| MS.gene45736.t1 | MTR_5g041610 | 50.676 | 148 | 69 | 2 | 14 | 161 | 3 | 146 | 1.73e-37 | 132 |
| MS.gene45736.t1 | MTR_5g041610 | 50.000 | 148 | 70 | 2 | 185 | 332 | 3 | 146 | 9.83e-37 | 130 |
| MS.gene45736.t1 | MTR_1g090810 | 49.333 | 150 | 75 | 1 | 184 | 332 | 3 | 152 | 2.41e-37 | 132 |
| MS.gene45736.t1 | MTR_1g090810 | 50.000 | 150 | 74 | 1 | 13 | 161 | 3 | 152 | 2.57e-37 | 132 |
| MS.gene45736.t1 | MTR_5g080440 | 48.649 | 148 | 72 | 2 | 14 | 161 | 3 | 146 | 2.67e-37 | 131 |
| MS.gene45736.t1 | MTR_5g080440 | 47.973 | 148 | 73 | 2 | 185 | 332 | 3 | 146 | 1.34e-36 | 129 |
| MS.gene45736.t1 | MTR_1g011540 | 50.676 | 148 | 68 | 3 | 14 | 161 | 3 | 145 | 2.70e-37 | 131 |
| MS.gene45736.t1 | MTR_1g011540 | 50.000 | 148 | 69 | 3 | 185 | 332 | 3 | 145 | 1.61e-36 | 129 |
| MS.gene45736.t1 | MTR_5g081000 | 50.000 | 148 | 69 | 3 | 14 | 161 | 3 | 145 | 1.62e-36 | 129 |
| MS.gene45736.t1 | MTR_5g081000 | 49.324 | 148 | 70 | 3 | 185 | 332 | 3 | 145 | 9.93e-36 | 127 |
| MS.gene45736.t1 | MTR_1g049330 | 47.333 | 150 | 76 | 2 | 12 | 161 | 1 | 147 | 3.34e-35 | 126 |
| MS.gene45736.t1 | MTR_1g049330 | 46.980 | 149 | 76 | 2 | 184 | 332 | 2 | 147 | 2.46e-34 | 124 |
| MS.gene45736.t1 | MTR_5g066070 | 46.667 | 150 | 76 | 2 | 12 | 161 | 1 | 146 | 3.57e-35 | 125 |
| MS.gene45736.t1 | MTR_5g066070 | 47.651 | 149 | 74 | 2 | 184 | 332 | 2 | 146 | 4.27e-35 | 125 |
| MS.gene45736.t1 | MTR_1g090820 | 47.297 | 148 | 75 | 1 | 14 | 161 | 3 | 147 | 9.52e-35 | 125 |
| MS.gene45736.t1 | MTR_1g090820 | 46.622 | 148 | 76 | 1 | 185 | 332 | 3 | 147 | 1.00e-33 | 122 |
| MS.gene45736.t1 | MTR_5g080400 | 48.000 | 150 | 72 | 3 | 14 | 162 | 3 | 147 | 2.46e-34 | 124 |
| MS.gene45736.t1 | MTR_5g080400 | 47.333 | 150 | 73 | 3 | 185 | 333 | 3 | 147 | 1.45e-33 | 122 |
| MS.gene45736.t1 | MTR_5g080900 | 40.667 | 150 | 70 | 3 | 12 | 161 | 1 | 131 | 1.18e-24 | 97.8 |
| MS.gene45736.t1 | MTR_5g080900 | 40.268 | 149 | 70 | 3 | 184 | 332 | 2 | 131 | 1.22e-23 | 95.1 |
| MS.gene45736.t1 | MTR_1g090820 | 46.296 | 108 | 55 | 1 | 54 | 161 | 1 | 105 | 9.77e-23 | 91.7 |
| MS.gene45736.t1 | MTR_1g090820 | 46.296 | 108 | 55 | 1 | 225 | 332 | 1 | 105 | 1.25e-22 | 91.7 |
| MS.gene45736.t1 | MTR_5g080400 | 46.364 | 110 | 53 | 3 | 225 | 333 | 1 | 105 | 7.36e-22 | 89.7 |
| MS.gene45736.t1 | MTR_5g080400 | 46.364 | 110 | 53 | 3 | 54 | 162 | 1 | 105 | 1.32e-21 | 89.0 |
| MS.gene45736.t1 | MTR_1g090820 | 47.222 | 108 | 54 | 1 | 14 | 121 | 3 | 107 | 8.18e-22 | 89.4 |
| MS.gene45736.t1 | MTR_1g090820 | 45.370 | 108 | 56 | 1 | 185 | 292 | 3 | 107 | 2.30e-20 | 85.5 |
| MS.gene45736.t1 | MTR_5g066070 | 47.222 | 108 | 53 | 2 | 14 | 121 | 3 | 106 | 2.53e-21 | 87.8 |
| MS.gene45736.t1 | MTR_5g066070 | 47.222 | 108 | 53 | 2 | 185 | 292 | 3 | 106 | 1.53e-20 | 85.9 |
| MS.gene45736.t1 | MTR_7g110180 | 41.463 | 123 | 53 | 5 | 12 | 133 | 1 | 105 | 2.33e-15 | 71.6 |
| MS.gene45736.t1 | MTR_7g110180 | 42.623 | 122 | 51 | 5 | 184 | 304 | 2 | 105 | 2.71e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45736.t1 | AT2G16060 | 71.242 | 153 | 44 | 0 | 9 | 161 | 4 | 156 | 5.93e-76 | 231 |
| MS.gene45736.t1 | AT2G16060 | 70.513 | 156 | 46 | 0 | 177 | 332 | 1 | 156 | 1.61e-75 | 230 |
| MS.gene45736.t1 | AT3G10520 | 53.247 | 154 | 72 | 0 | 10 | 163 | 2 | 155 | 1.25e-52 | 171 |
| MS.gene45736.t1 | AT3G10520 | 56.667 | 150 | 65 | 0 | 185 | 334 | 6 | 155 | 1.50e-52 | 171 |
Find 54 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAATTACTTATCAAAT+TGG | 0.196171 | 4.4:-38614052 | None:intergenic |
| ATTATGACATGTTAGAATTC+TGG | 0.211312 | 4.4:+38615291 | MS.gene45736:intron |
| GGTAACAAAACAAGCTCTTT+TGG | 0.251442 | 4.4:+38613900 | MS.gene45736:intron |
| GGTAACAAAGCAAGCCCTTT+TGG | 0.262800 | 4.4:+38615948 | MS.gene45736:intron |
| AATTCTGATTGTTAGAATAC+TGG | 0.324830 | 4.4:+38613098 | MS.gene45736:intron |
| GTCTAATTAAGAGGAGGGTT+TGG | 0.334332 | 4.4:-38616115 | None:intergenic |
| AATGAAAACATTTGCTTAGC+TGG | 0.335061 | 4.4:-38613132 | None:intergenic |
| GAAAGATTCAAATGTTCCTT+TGG | 0.344016 | 4.4:+38613158 | MS.gene45736:CDS |
| ATAGCTAGAGACCACATTTC+AGG | 0.345376 | 4.4:-38613943 | None:intergenic |
| AAAAGATTCAAATGTTCCTT+TGG | 0.354441 | 4.4:+38615351 | MS.gene45736:CDS |
| CATCTCAGCTTTGATGGCAT+TGG | 0.372687 | 4.4:-38616049 | None:intergenic |
| GAATCAAATTTGAAGAAGTT+AGG | 0.398518 | 4.4:+38613725 | MS.gene45736:CDS |
| AATGAGAACAATTGCTTAGC+TGG | 0.398732 | 4.4:-38615325 | None:intergenic |
| GGTGCCACTCATTTCAAAAC+TGG | 0.400143 | 4.4:+38613746 | MS.gene45736:CDS |
| GGTGCCACTCATTTCAAAAC+TGG | 0.400143 | 4.4:+38615618 | MS.gene45736:CDS |
| TGAGATGTGGTCACCGGCTA+TGG | 0.409008 | 4.4:+38615993 | MS.gene45736:CDS |
| GAAAGAAGCTCATGATCAAC+TGG | 0.424877 | 4.4:+38614023 | MS.gene45736:CDS |
| ATAGCATGTGGCTTGAGCTT+AGG | 0.435870 | 4.4:-38613189 | None:intergenic |
| TGGCATTGGCCAGCTGATCA+TGG | 0.436974 | 4.4:-38616035 | None:intergenic |
| GAATCAAACTTGAAGAAGTT+AGG | 0.452597 | 4.4:+38615597 | MS.gene45736:CDS |
| ATGGCATGAGGCTTGAGCTT+AGG | 0.456443 | 4.4:-38615382 | None:intergenic |
| CATTTCAGCTTTGATAGCAT+TGG | 0.458163 | 4.4:-38614001 | None:intergenic |
| TTTGGATTTATCTTCAACAT+TGG | 0.461851 | 4.4:-38616097 | None:intergenic |
| AGAAACATAGTCTAATTAAG+AGG | 0.496520 | 4.4:-38616124 | None:intergenic |
| GCAGTTCAATTGAGAAATGC+TGG | 0.500173 | 4.4:+38615558 | MS.gene45736:CDS |
| GGCAGAAGCTCATGATCAGC+TGG | 0.502848 | 4.4:+38613978 | MS.gene45736:CDS |
| TGCCATGTCTGTCTTTCTCA+TGG | 0.508395 | 4.4:+38615399 | MS.gene45736:CDS |
| GCAGTTCAATTGCGTAAGGC+TGG | 0.515135 | 4.4:+38613686 | MS.gene45736:CDS |
| GGGAGAAGCCCATGATCAGC+TGG | 0.521253 | 4.4:+38616026 | MS.gene45736:CDS |
| CACCGGCTATGGAAAATGCA+TGG | 0.527671 | 4.4:+38616004 | MS.gene45736:CDS |
| GGCATTGGCCAGCTGATCAT+GGG | 0.529199 | 4.4:-38616034 | None:intergenic |
| TGCTATGTCTGTCTTTCTCA+TGG | 0.531096 | 4.4:+38613206 | MS.gene45736:CDS |
| ATAGCCGGTGACCACATCTC+AGG | 0.534181 | 4.4:-38615991 | None:intergenic |
| AAGCTCTAGTCGTGAAGTCA+TGG | 0.537512 | 4.4:+38615137 | MS.gene45736:CDS |
| ACCGGCTATGGAAAATGCAT+GGG | 0.537843 | 4.4:+38616005 | MS.gene45736:CDS |
| AAGCTCTAGTGCTAAAGTCA+TGG | 0.546385 | 4.4:+38612842 | MS.gene45736:CDS |
| TTCTTAATCAGCAGTTAACA+TGG | 0.559415 | 4.4:+38615078 | MS.gene45736:intron |
| GAGAACAAGAAAACTGTGGA+TGG | 0.560503 | 4.4:+38612793 | MS.gene45736:CDS |
| AATGCAATCAAGAACAACTC+TGG | 0.563556 | 4.4:+38615160 | MS.gene45736:CDS |
| AACATAGTCTAATTAAGAGG+AGG | 0.573065 | 4.4:-38616121 | None:intergenic |
| ACATAGTCTAATTAAGAGGA+GGG | 0.576395 | 4.4:-38616120 | None:intergenic |
| GAAAACATTTGCTTAGCTGG+TGG | 0.587466 | 4.4:-38613129 | None:intergenic |
| ATCAGCAGTTCAATTGCGTA+AGG | 0.590365 | 4.4:+38613682 | MS.gene45736:CDS |
| ATTACCTGAGATGTGGTCAC+CGG | 0.617794 | 4.4:+38615987 | MS.gene45736:CDS |
| GAGAACAATTGCTTAGCTGG+TGG | 0.618028 | 4.4:-38615322 | None:intergenic |
| AAGAAGCAATACCTGAAATG+TGG | 0.626542 | 4.4:+38613932 | MS.gene45736:CDS |
| AAGAAGCATTACCTGAGATG+TGG | 0.630182 | 4.4:+38615980 | MS.gene45736:CDS |
| GTTAACATGGAAGAGAACAC+AGG | 0.664637 | 4.4:+38615091 | MS.gene45736:intron |
| AGAAAGACAGACATGGCATG+AGG | 0.665594 | 4.4:-38615394 | None:intergenic |
| GGAAGAGAACAAGAAAACTG+TGG | 0.684809 | 4.4:+38612789 | MS.gene45736:CDS |
| AGAAAGACAGACATAGCATG+TGG | 0.690738 | 4.4:-38613201 | None:intergenic |
| CCGGCTATGGAAAATGCATG+GGG | 0.691095 | 4.4:+38616006 | MS.gene45736:CDS |
| CACAGGCAGTTGTTTCACAG+AGG | 0.716668 | 4.4:+38615108 | MS.gene45736:CDS |
| TACCATGAGAAAGACAGACA+TGG | 0.721404 | 4.4:-38615401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTAATATAATTAA+CGG | - | chr4.4:38612957-38612976 | None:intergenic | 0.0% |
| !!! | ATTAATTTCATTTTTCATTT+AGG | + | chr4.4:38615217-38615236 | MS.gene45736:intron | 10.0% |
| !!! | TAAAAAATATTTTATGGTTT+TGG | - | chr4.4:38614501-38614520 | None:intergenic | 10.0% |
| !!! | TTATTATTTCATATTTGTTA+AGG | + | chr4.4:38613879-38613898 | MS.gene45736:intron | 10.0% |
| !!! | TTTAAAATTACTTATCAAAT+TGG | - | chr4.4:38614055-38614074 | None:intergenic | 10.0% |
| !! | ACATTTGTCAAAAAAAAAAA+AGG | + | chr4.4:38612997-38613016 | MS.gene45736:intron | 15.0% |
| !! | GTAATTAATCAAAAAACAAA+TGG | - | chr4.4:38615448-38615467 | None:intergenic | 15.0% |
| !!! | AGACATTTTTTTTTTTTTGA+AGG | + | chr4.4:38613025-38613044 | MS.gene45736:intron | 15.0% |
| !!! | GAGTTTAATCTTTTTAATTA+TGG | + | chr4.4:38615842-38615861 | MS.gene45736:intron | 15.0% |
| !!! | TATCCAATTTTTATTATAGT+CGG | + | chr4.4:38614197-38614216 | MS.gene45736:intron | 15.0% |
| !!! | TTTTTCTAATTTAAGTCATA+AGG | - | chr4.4:38613284-38613303 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTGAAGGAAAA+AGG | + | chr4.4:38613032-38613051 | MS.gene45736:intron | 15.0% |
| !! | AAACTCATATTGTGTATATT+TGG | - | chr4.4:38615828-38615847 | None:intergenic | 20.0% |
| !! | AACTCATATTGTGTATATTT+GGG | - | chr4.4:38615827-38615846 | None:intergenic | 20.0% |
| !! | ATAGTACTAGTAATATTGAA+AGG | - | chr4.4:38613808-38613827 | None:intergenic | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | + | chr4.4:38613596-38613615 | MS.gene45736:intron | 20.0% |
| !! | ATTAAGAATAATAGTGACAA+TGG | - | chr4.4:38615066-38615085 | None:intergenic | 20.0% |
| !! | TTTACTAGTATATATTGACA+AGG | + | chr4.4:38615734-38615753 | MS.gene45736:intron | 20.0% |
| !!! | AAATATTTTATGGTTTTGGT+TGG | - | chr4.4:38614497-38614516 | None:intergenic | 20.0% |
| !!! | AATATGTATTTTTAAGCATG+TGG | + | chr4.4:38614645-38614664 | MS.gene45736:intron | 20.0% |
| !!! | ATATACACTACCATATATTT+TGG | - | chr4.4:38614798-38614817 | None:intergenic | 20.0% |
| !!! | ATATGTATTTTTAAGCATGT+GGG | + | chr4.4:38614646-38614665 | MS.gene45736:intron | 20.0% |
| !!! | CTTGAATGGATATAAAATTT+TGG | - | chr4.4:38614686-38614705 | None:intergenic | 20.0% |
| !!! | TAATTAATTTTCAGCTTGTA+AGG | + | chr4.4:38612967-38612986 | MS.gene45736:intron | 20.0% |
| !!! | TATTAATACTCCTAATTTGT+TGG | + | chr4.4:38614898-38614917 | MS.gene45736:intron | 20.0% |
| !!! | TTAAGTTTAAAATTGTGCAT+TGG | - | chr4.4:38613436-38613455 | None:intergenic | 20.0% |
| !!! | TTTTATTGTTTCGTTATGTA+AGG | + | chr4.4:38615927-38615946 | MS.gene45736:intron | 20.0% |
| !!! | TTTTCTTTTTAAGTTTTTGC+AGG | - | chr4.4:38614832-38614851 | None:intergenic | 20.0% |
| ! | AAAAGATTCAAATGTTCCTT+TGG | + | chr4.4:38615351-38615370 | MS.gene45736:CDS | 25.0% |
| ! | AATGCAATGAAGAAAAATTC+TGG | + | chr4.4:38612865-38612884 | MS.gene45736:CDS | 25.0% |
| ! | AATTCTGATTGTTAGAATAC+TGG | + | chr4.4:38613098-38613117 | MS.gene45736:intron | 25.0% |
| ! | ATGCAATGAAGAAAAATTCT+GGG | + | chr4.4:38612866-38612885 | MS.gene45736:CDS | 25.0% |
| ! | ATTATGACATGTTAGAATTC+TGG | + | chr4.4:38615291-38615310 | MS.gene45736:intron | 25.0% |
| ! | CACACTTTAACCAAAATATA+TGG | + | chr4.4:38614785-38614804 | MS.gene45736:intron | 25.0% |
| ! | CATTACTTGTATCTCTTATT+TGG | + | chr4.4:38613361-38613380 | MS.gene45736:intron | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | + | chr4.4:38613610-38613629 | MS.gene45736:intron | 25.0% |
| ! | GAATCAAATTTGAAGAAGTT+AGG | + | chr4.4:38613725-38613744 | MS.gene45736:CDS | 25.0% |
| ! | GTAATACTAACATACTACTA+TGG | + | chr4.4:38615663-38615682 | MS.gene45736:intron | 25.0% |
| ! | TCATCTAATTAGTATAACTG+AGG | + | chr4.4:38613247-38613266 | MS.gene45736:intron | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | + | chr4.4:38613609-38613628 | MS.gene45736:intron | 25.0% |
| ! | TTTGGATTTATCTTCAACAT+TGG | - | chr4.4:38616100-38616119 | None:intergenic | 25.0% |
| !! | AAAATTTTGGACACAAGATT+TGG | - | chr4.4:38614673-38614692 | None:intergenic | 25.0% |
| !! | ACACCGACTATAATAAAAAT+TGG | - | chr4.4:38614203-38614222 | None:intergenic | 25.0% |
| !! | AGATGTGTTGTATAATCTTT+TGG | - | chr4.4:38614474-38614493 | None:intergenic | 25.0% |
| !! | ATTCACTCATTGATTAAAGA+TGG | - | chr4.4:38614981-38615000 | None:intergenic | 25.0% |
| !! | GTGTATATTTGAAATCATGA+TGG | + | chr4.4:38615769-38615788 | MS.gene45736:intron | 25.0% |
| !! | GTGTTTTTCTTTGGATTTAA+CGG | - | chr4.4:38614300-38614319 | None:intergenic | 25.0% |
| !!! | TTACATTAGTCTTCTACAAA+AGG | - | chr4.4:38613847-38613866 | None:intergenic | 25.0% |
| AATCATGAGTGATACTCAAT+TGG | - | chr4.4:38613077-38613096 | None:intergenic | 30.0% | |
| AATGAAAACATTTGCTTAGC+TGG | - | chr4.4:38613135-38613154 | None:intergenic | 30.0% | |
| AGGGCTCTTATATCATTTAT+TGG | + | chr4.4:38614398-38614417 | MS.gene45736:intron | 30.0% | |
| ATATGAGAGATGTTATCTAC+AGG | - | chr4.4:38614715-38614734 | None:intergenic | 30.0% | |
| CAATGTCAAGAAAACTTACA+AGG | + | chr4.4:38614330-38614349 | MS.gene45736:intron | 30.0% | |
| GAAAGATTCAAATGTTCCTT+TGG | + | chr4.4:38613158-38613177 | MS.gene45736:CDS | 30.0% | |
| GAATCAAACTTGAAGAAGTT+AGG | + | chr4.4:38615597-38615616 | MS.gene45736:CDS | 30.0% | |
| TACTAATAGTACAAGTTACG+AGG | - | chr4.4:38614103-38614122 | None:intergenic | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | - | chr4.4:38613399-38613418 | None:intergenic | 30.0% | |
| TCTACAGGAAAATACTTGAA+TGG | - | chr4.4:38614700-38614719 | None:intergenic | 30.0% | |
| TCTAGCTATGAAAAATGCAT+GGG | + | chr4.4:38613957-38613976 | MS.gene45736:CDS | 30.0% | |
| TGCAATGAAGAAAAATTCTG+GGG | + | chr4.4:38612867-38612886 | MS.gene45736:CDS | 30.0% | |
| TTCTTAATCAGCAGTTAACA+TGG | + | chr4.4:38615078-38615097 | MS.gene45736:intron | 30.0% | |
| ! | CGTAACTTGTACTATTAGTA+GGG | + | chr4.4:38614103-38614122 | MS.gene45736:intron | 30.0% |
| ! | GTTCTTCTAGAAAAGTAGTA+CGG | - | chr4.4:38615883-38615902 | None:intergenic | 30.0% |
| ! | TCATTGATTAAAGATGGAGT+TGG | - | chr4.4:38614975-38614994 | None:intergenic | 30.0% |
| ! | TCGTAACTTGTACTATTAGT+AGG | + | chr4.4:38614102-38614121 | MS.gene45736:intron | 30.0% |
| ! | TGTAAAAGATGAGCATTTTG+AGG | + | chr4.4:38613769-38613788 | MS.gene45736:CDS | 30.0% |
| ! | TGTGTTGTATAATCTTTTGG+TGG | - | chr4.4:38614471-38614490 | None:intergenic | 30.0% |
| ! | TTCTTTTATGGTCTCCAAAA+GGG | - | chr4.4:38615965-38615984 | None:intergenic | 30.0% |
| !! | TGATTTTGTAGTTTGTGCTA+TGG | - | chr4.4:38615027-38615046 | None:intergenic | 30.0% |
| !! | TTTTGGTGGTTATGAATCAT+TGG | - | chr4.4:38614457-38614476 | None:intergenic | 30.0% |
| !!! | TGTGCTTTTTCCAACAAATT+AGG | - | chr4.4:38614911-38614930 | None:intergenic | 30.0% |
| !!! | TTTTTTCATCTCAGCTTTGA+TGG | - | chr4.4:38616058-38616077 | None:intergenic | 30.0% |
| AAAAGACTTGTACATTCGCA+CGG | - | chr4.4:38615717-38615736 | None:intergenic | 35.0% | |
| AAGAAGCAATACCTGAAATG+TGG | + | chr4.4:38613932-38613951 | MS.gene45736:CDS | 35.0% | |
| AATGAGAACAATTGCTTAGC+TGG | - | chr4.4:38615328-38615347 | None:intergenic | 35.0% | |
| AATGCAATCAAGAACAACTC+TGG | + | chr4.4:38615160-38615179 | MS.gene45736:CDS | 35.0% | |
| ACTATGGTTGACACAATGTT+AGG | + | chr4.4:38615679-38615698 | MS.gene45736:intron | 35.0% | |
| ATAAGAGCCCTAATTCAACT+TGG | - | chr4.4:38614389-38614408 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | + | chr4.4:38613614-38613633 | MS.gene45736:intron | 35.0% | |
| ATTGCAAAATAACTCCCCAT+TGG | + | chr4.4:38614940-38614959 | MS.gene45736:intron | 35.0% | |
| CTCTAGCTATGAAAAATGCA+TGG | + | chr4.4:38613956-38613975 | MS.gene45736:CDS | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | - | chr4.4:38613400-38613419 | None:intergenic | 35.0% | |
| TTACAAGGATCAAATAGAGC+AGG | + | chr4.4:38614345-38614364 | MS.gene45736:intron | 35.0% | |
| TTCTTGACATTGTAGTCAAG+AGG | - | chr4.4:38614322-38614341 | None:intergenic | 35.0% | |
| TTGTGAAAAAGTTGAGACTC+AGG | - | chr4.4:38612894-38612913 | None:intergenic | 35.0% | |
| TTGTTGATATCAAGTGTGAG+TGG | - | chr4.4:38614234-38614253 | None:intergenic | 35.0% | |
| ! | ATTGTGTATATTTGGGTTCG+TGG | - | chr4.4:38615820-38615839 | None:intergenic | 35.0% |
| ! | CATTTCAGCTTTGATAGCAT+TGG | - | chr4.4:38614004-38614023 | None:intergenic | 35.0% |
| ! | CTCAGGTAATGCTTCTTTTA+TGG | - | chr4.4:38615977-38615996 | None:intergenic | 35.0% |
| ! | CTCTTCACCAAGTTGAATTA+GGG | + | chr4.4:38614379-38614398 | MS.gene45736:intron | 35.0% |
| ! | CTTCTTTTATGGTCTCCAAA+AGG | - | chr4.4:38615966-38615985 | None:intergenic | 35.0% |
| ! | GGTAACAAAACAAGCTCTTT+TGG | + | chr4.4:38613900-38613919 | MS.gene45736:intron | 35.0% |
| !!! | AGTCAAGAGGTGTTTTTCTT+TGG | - | chr4.4:38614309-38614328 | None:intergenic | 35.0% |
| !!! | TACACCAGTTTTGAAATGAG+TGG | - | chr4.4:38613753-38613772 | None:intergenic | 35.0% |
| AGAAAGACAGACATAGCATG+TGG | - | chr4.4:38613204-38613223 | None:intergenic | 40.0% | |
| ATAGCTAGAGACCACATTTC+AGG | - | chr4.4:38613946-38613965 | None:intergenic | 40.0% | |
| ATCAGCAGTTCAATTGCGTA+AGG | + | chr4.4:38613682-38613701 | MS.gene45736:CDS | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | - | chr4.4:38613395-38613414 | None:intergenic | 40.0% | |
| CTTGTGTGGTCACAATACTT+TGG | + | chr4.4:38614539-38614558 | MS.gene45736:intron | 40.0% | |
| GAAAACATTTGCTTAGCTGG+TGG | - | chr4.4:38613132-38613151 | None:intergenic | 40.0% | |
| GAAAGAAGCTCATGATCAAC+TGG | + | chr4.4:38614023-38614042 | MS.gene45736:CDS | 40.0% | |
| GACCACAAACAATTCTTGTG+TGG | + | chr4.4:38614525-38614544 | MS.gene45736:intron | 40.0% | |
| GACCACACAAGAATTGTTTG+TGG | - | chr4.4:38614530-38614549 | None:intergenic | 40.0% | |
| GAGAACAAGAAAACTGTGGA+TGG | + | chr4.4:38612793-38612812 | MS.gene45736:CDS | 40.0% | |
| GCAGTTCAATTGAGAAATGC+TGG | + | chr4.4:38615558-38615577 | MS.gene45736:CDS | 40.0% | |
| GGAAGAGAACAAGAAAACTG+TGG | + | chr4.4:38612789-38612808 | MS.gene45736:CDS | 40.0% | |
| GTTAACATGGAAGAGAACAC+AGG | + | chr4.4:38615091-38615110 | MS.gene45736:intron | 40.0% | |
| TACCATGAGAAAGACAGACA+TGG | - | chr4.4:38613211-38613230 | None:intergenic | 40.0% | |
| TGCTATGTCTGTCTTTCTCA+TGG | + | chr4.4:38613206-38613225 | MS.gene45736:CDS | 40.0% | |
| TTAACGGCAATGCAAGTGTA+GGG | - | chr4.4:38614284-38614303 | None:intergenic | 40.0% | |
| TTTAACGGCAATGCAAGTGT+AGG | - | chr4.4:38614285-38614304 | None:intergenic | 40.0% | |
| ! | AAGCTCTAGTGCTAAAGTCA+TGG | + | chr4.4:38612842-38612861 | MS.gene45736:CDS | 40.0% |
| ! | AGCTTAGGATTTTGCTCCAA+AGG | - | chr4.4:38613177-38613196 | None:intergenic | 40.0% |
| ! | GCTCTTCACCAAGTTGAATT+AGG | + | chr4.4:38614378-38614397 | MS.gene45736:intron | 40.0% |
| !! | AAGAAGCATTACCTGAGATG+TGG | + | chr4.4:38615980-38615999 | MS.gene45736:CDS | 40.0% |
| ACCGGCTATGGAAAATGCAT+GGG | + | chr4.4:38616005-38616024 | MS.gene45736:CDS | 45.0% | |
| AGAAAGACAGACATGGCATG+AGG | - | chr4.4:38615397-38615416 | None:intergenic | 45.0% | |
| ATAGCATGTGGCTTGAGCTT+AGG | - | chr4.4:38613192-38613211 | None:intergenic | 45.0% | |
| ATTACCTGAGATGTGGTCAC+CGG | + | chr4.4:38615987-38616006 | MS.gene45736:CDS | 45.0% | |
| GAGAACAATTGCTTAGCTGG+TGG | - | chr4.4:38615325-38615344 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr4.4:38613618-38613637 | MS.gene45736:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr4.4:38613637-38613618 | None:intergenic | 45.0% | |
| TGCCATGTCTGTCTTTCTCA+TGG | + | chr4.4:38615399-38615418 | MS.gene45736:CDS | 45.0% | |
| ! | AAGCTCTAGTCGTGAAGTCA+TGG | + | chr4.4:38615137-38615156 | MS.gene45736:CDS | 45.0% |
| ! | ATCGAAAAGAGAGAGCGTGT+AGG | + | chr4.4:38614155-38614174 | MS.gene45736:intron | 45.0% |
| ! | CATCTCAGCTTTGATGGCAT+TGG | - | chr4.4:38616052-38616071 | None:intergenic | 45.0% |
| ! | GGTAACAAAGCAAGCCCTTT+TGG | + | chr4.4:38615948-38615967 | MS.gene45736:intron | 45.0% |
| !! | GGTGCCACTCATTTCAAAAC+TGG | + | chr4.4:38613746-38613765 | MS.gene45736:CDS | 45.0% |
| !!! | TAAGTAATTTTAAATATAAT+TGG | + | chr4.4:38614061-38614080 | MS.gene45736:intron | 5.0% |
| !!! | TCTATATAAAAAATATTTTA+TGG | - | chr4.4:38614507-38614526 | None:intergenic | 5.0% |
| ATGGCATGAGGCTTGAGCTT+AGG | - | chr4.4:38615385-38615404 | None:intergenic | 50.0% | |
| CACACGTGACAGAGTCAACT+AGG | - | chr4.4:38613413-38613432 | None:intergenic | 50.0% | |
| CCGGCTATGGAAAATGCATG+GGG | + | chr4.4:38616006-38616025 | MS.gene45736:CDS | 50.0% | |
| GCAGTTCAATTGCGTAAGGC+TGG | + | chr4.4:38613686-38613705 | MS.gene45736:CDS | 50.0% | |
| GGCAATGCAAGTGTAGGGTA+TGG | - | chr4.4:38614279-38614298 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr4.4:38613617-38613636 | MS.gene45736:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr4.4:38613636-38613617 | None:intergenic | 50.0% | |
| TGTACATTCGCACGGATGCA+CGG | - | chr4.4:38615709-38615728 | None:intergenic | 50.0% | |
| TGTTGCTCCTGACGCTTCTA+TGG | - | chr4.4:38614429-38614448 | None:intergenic | 50.0% | |
| ! | AGTTGGCTCTTCGTGCCAAT+GGG | - | chr4.4:38614958-38614977 | None:intergenic | 50.0% |
| ! | CACAGGCAGTTGTTTCACAG+AGG | + | chr4.4:38615108-38615127 | MS.gene45736:CDS | 50.0% |
| ! | CACCGGCTATGGAAAATGCA+TGG | + | chr4.4:38616004-38616023 | MS.gene45736:CDS | 50.0% |
| ! | CCCCATGCATTTTCCATAGC+CGG | - | chr4.4:38616009-38616028 | None:intergenic | 50.0% |
| ATAGCCGGTGACCACATCTC+AGG | - | chr4.4:38615994-38616013 | None:intergenic | 55.0% | |
| GGCAGAAGCTCATGATCAGC+TGG | + | chr4.4:38613978-38613997 | MS.gene45736:CDS | 55.0% | |
| GTTGCGAACCATTGCAGAGC+AGG | - | chr4.4:38614132-38614151 | None:intergenic | 55.0% | |
| TAGGGTAGCCTGCTCTGCAA+TGG | + | chr4.4:38614121-38614140 | MS.gene45736:intron | 55.0% | |
| ! | GAGTTGGCTCTTCGTGCCAA+TGG | - | chr4.4:38614959-38614978 | None:intergenic | 55.0% |
| ! | GTTGGCTCTTCGTGCCAATG+GGG | - | chr4.4:38614957-38614976 | None:intergenic | 55.0% |
| ! | TGAGATGTGGTCACCGGCTA+TGG | + | chr4.4:38615993-38616012 | MS.gene45736:CDS | 55.0% |
| !! | GGAGAGTCCATAGAAGCGTC+AGG | + | chr4.4:38614419-38614438 | MS.gene45736:intron | 55.0% |
| !! | GGCATTGGCCAGCTGATCAT+GGG | - | chr4.4:38616037-38616056 | None:intergenic | 55.0% |
| !! | TGGCATTGGCCAGCTGATCA+TGG | - | chr4.4:38616038-38616057 | None:intergenic | 55.0% |
| GGGAGAAGCCCATGATCAGC+TGG | + | chr4.4:38616026-38616045 | MS.gene45736:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38612787 | 38616131 | 38612787 | ID=MS.gene45736 |
| chr4.4 | mRNA | 38612787 | 38616131 | 38612787 | ID=MS.gene45736.t1;Parent=MS.gene45736 |
| chr4.4 | exon | 38612787 | 38612914 | 38612787 | ID=MS.gene45736.t1.exon1;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38612787 | 38612914 | 38612787 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| chr4.4 | exon | 38613113 | 38613227 | 38613113 | ID=MS.gene45736.t1.exon2;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38613113 | 38613227 | 38613113 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| chr4.4 | exon | 38613674 | 38613790 | 38613674 | ID=MS.gene45736.t1.exon3;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38613674 | 38613790 | 38613674 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| chr4.4 | exon | 38613901 | 38614063 | 38613901 | ID=MS.gene45736.t1.exon4;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38613901 | 38614063 | 38613901 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| chr4.4 | exon | 38615092 | 38615209 | 38615092 | ID=MS.gene45736.t1.exon5;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38615092 | 38615209 | 38615092 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| chr4.4 | exon | 38615306 | 38615420 | 38615306 | ID=MS.gene45736.t1.exon6;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38615306 | 38615420 | 38615306 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| chr4.4 | exon | 38615546 | 38615662 | 38615546 | ID=MS.gene45736.t1.exon7;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38615546 | 38615662 | 38615546 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| chr4.4 | exon | 38615949 | 38616131 | 38615949 | ID=MS.gene45736.t1.exon8;Parent=MS.gene45736.t1 |
| chr4.4 | CDS | 38615949 | 38616131 | 38615949 | ID=cds.MS.gene45736.t1;Parent=MS.gene45736.t1 |
| Gene Sequence |
| Protein sequence |
