Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46636.t1 | XP_013443065.1 | 99.5 | 367 | 2 | 0 | 1 | 367 | 1 | 367 | 1.10E-210 | 742.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46636.t1 | A0A072TU53 | 99.5 | 367 | 2 | 0 | 1 | 367 | 1 | 367 | 8.0e-211 | 742.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050326 | MS.gene46636 | 0.803582 | 3.25E-49 | -1.69E-46 |
MS.gene050667 | MS.gene46636 | 0.833631 | 4.77E-56 | -1.69E-46 |
MS.gene051914 | MS.gene46636 | 0.818846 | 1.58E-52 | -1.69E-46 |
MS.gene052143 | MS.gene46636 | 0.806398 | 8.39E-50 | -1.69E-46 |
MS.gene052169 | MS.gene46636 | 0.890906 | 6.45E-74 | -1.69E-46 |
MS.gene052209 | MS.gene46636 | 0.827923 | 1.20E-54 | -1.69E-46 |
MS.gene052308 | MS.gene46636 | 0.806116 | 9.61E-50 | -1.69E-46 |
MS.gene052367 | MS.gene46636 | 0.847866 | 8.82E-60 | -1.69E-46 |
MS.gene052383 | MS.gene46636 | 0.81903 | 1.44E-52 | -1.69E-46 |
MS.gene053173 | MS.gene46636 | 0.841831 | 3.74E-58 | -1.69E-46 |
MS.gene053281 | MS.gene46636 | 0.816405 | 5.62E-52 | -1.69E-46 |
MS.gene053283 | MS.gene46636 | 0.805355 | 1.39E-49 | -1.69E-46 |
MS.gene054551 | MS.gene46636 | 0.8345 | 2.89E-56 | -1.69E-46 |
MS.gene054593 | MS.gene46636 | 0.819796 | 9.62E-53 | -1.69E-46 |
MS.gene054662 | MS.gene46636 | 0.86068 | 1.74E-63 | -1.69E-46 |
MS.gene054941 | MS.gene46636 | 0.814634 | 1.39E-51 | -1.69E-46 |
MS.gene055308 | MS.gene46636 | 0.80567 | 1.19E-49 | -1.69E-46 |
MS.gene056041 | MS.gene46636 | 0.810225 | 1.28E-50 | -1.69E-46 |
MS.gene05640 | MS.gene46636 | 0.823893 | 1.08E-53 | -1.69E-46 |
MS.gene056526 | MS.gene46636 | 0.805525 | 1.28E-49 | -1.69E-46 |
MS.gene05652 | MS.gene46636 | 0.855506 | 6.03E-62 | -1.69E-46 |
MS.gene057165 | MS.gene46636 | 0.814615 | 1.41E-51 | -1.69E-46 |
MS.gene05732 | MS.gene46636 | 0.840423 | 8.77E-58 | -1.69E-46 |
MS.gene057367 | MS.gene46636 | 0.8574 | 1.68E-62 | -1.69E-46 |
MS.gene057458 | MS.gene46636 | 0.803406 | 3.54E-49 | -1.69E-46 |
MS.gene057669 | MS.gene46636 | 0.85591 | 4.59E-62 | -1.69E-46 |
MS.gene057990 | MS.gene46636 | 0.816276 | 6.01E-52 | -1.69E-46 |
MS.gene058849 | MS.gene46636 | 0.800551 | 1.37E-48 | -1.69E-46 |
MS.gene05926 | MS.gene46636 | 0.828248 | 9.99E-55 | -1.69E-46 |
MS.gene05960 | MS.gene46636 | 0.808428 | 3.11E-50 | -1.69E-46 |
MS.gene06093 | MS.gene46636 | 0.874838 | 4.94E-68 | -1.69E-46 |
MS.gene060985 | MS.gene46636 | 0.820201 | 7.77E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene60267 | MS.gene46636 | PPI |
MS.gene51556 | MS.gene46636 | PPI |
MS.gene015971 | MS.gene46636 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46636.t1 | MTR_0045s0110 | 99.455 | 367 | 2 | 0 | 1 | 367 | 1 | 367 | 0.0 | 747 |
MS.gene46636.t1 | MTR_4g039720 | 78.533 | 368 | 78 | 1 | 1 | 367 | 4 | 371 | 0.0 | 625 |
MS.gene46636.t1 | MTR_4g039680 | 80.381 | 367 | 72 | 0 | 1 | 367 | 1 | 367 | 0.0 | 623 |
MS.gene46636.t1 | MTR_4g039740 | 78.202 | 367 | 80 | 0 | 1 | 367 | 1 | 367 | 0.0 | 619 |
MS.gene46636.t1 | MTR_1g011800 | 56.325 | 332 | 143 | 2 | 32 | 361 | 37 | 368 | 3.47e-133 | 385 |
MS.gene46636.t1 | MTR_2g103170 | 50.595 | 336 | 160 | 2 | 32 | 361 | 26 | 361 | 3.39e-119 | 350 |
MS.gene46636.t1 | MTR_2g019600 | 43.544 | 333 | 187 | 1 | 32 | 363 | 33 | 365 | 8.69e-93 | 283 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46636.t1 | AT3G08030 | 67.816 | 348 | 111 | 1 | 21 | 367 | 18 | 365 | 4.24e-177 | 496 |
MS.gene46636.t1 | AT3G08030 | 69.040 | 323 | 99 | 1 | 46 | 367 | 1 | 323 | 2.47e-168 | 473 |
MS.gene46636.t1 | AT2G41800 | 61.960 | 347 | 128 | 3 | 22 | 364 | 21 | 367 | 6.14e-155 | 441 |
MS.gene46636.t1 | AT2G41810 | 58.743 | 366 | 146 | 3 | 3 | 363 | 1 | 366 | 2.67e-152 | 434 |
MS.gene46636.t1 | AT5G25460 | 54.286 | 350 | 159 | 1 | 13 | 361 | 12 | 361 | 4.96e-140 | 402 |
MS.gene46636.t1 | AT5G11420 | 56.193 | 331 | 144 | 1 | 32 | 361 | 28 | 358 | 2.51e-139 | 400 |
MS.gene46636.t1 | AT4G32460 | 55.589 | 331 | 146 | 1 | 32 | 361 | 27 | 357 | 1.27e-134 | 389 |
MS.gene46636.t1 | AT4G32460 | 55.589 | 331 | 146 | 1 | 32 | 361 | 27 | 357 | 1.27e-134 | 389 |
MS.gene46636.t1 | AT4G32460 | 55.836 | 317 | 139 | 1 | 46 | 361 | 1 | 317 | 1.94e-130 | 377 |
MS.gene46636.t1 | AT4G32460 | 55.836 | 317 | 139 | 1 | 46 | 361 | 1 | 317 | 1.94e-130 | 377 |
MS.gene46636.t1 | AT1G80240 | 51.964 | 331 | 158 | 1 | 32 | 361 | 30 | 360 | 3.66e-121 | 355 |
MS.gene46636.t1 | AT1G29980 | 41.834 | 349 | 193 | 2 | 25 | 363 | 34 | 382 | 6.51e-94 | 286 |
MS.gene46636.t1 | AT1G29980 | 42.647 | 340 | 185 | 2 | 34 | 363 | 7 | 346 | 6.67e-94 | 285 |
MS.gene46636.t1 | AT2G34510 | 43.155 | 336 | 185 | 2 | 34 | 363 | 43 | 378 | 1.48e-93 | 285 |
MS.gene46636.t1 | AT2G34510 | 45.205 | 292 | 154 | 2 | 78 | 363 | 1 | 292 | 1.70e-85 | 262 |
MS.gene46636.t1 | AT5G14150 | 28.732 | 355 | 220 | 11 | 31 | 367 | 22 | 361 | 7.02e-31 | 121 |
MS.gene46636.t1 | AT5G14150 | 28.732 | 355 | 220 | 11 | 31 | 367 | 22 | 361 | 7.02e-31 | 121 |
Find 84 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGTTGGTTGAGTTGAAAAT+TGG | 0.160332 | 3.3:+23785196 | None:intergenic |
TTGGTATTCTTTAGGTCTTT+AGG | 0.165937 | 3.3:+23786716 | None:intergenic |
CCCTTCCCTTCGGATTTAAA+TGG | 0.190979 | 3.3:+23784890 | None:intergenic |
CAACTCTATGCTTTAATTCT+TGG | 0.196335 | 3.3:-23786524 | MS.gene46636:CDS |
TGGTATTCTTTAGGTCTTTA+GGG | 0.221241 | 3.3:+23786717 | None:intergenic |
TTTGCAGTTTATCTTCAAAA+TGG | 0.237288 | 3.3:-23786761 | MS.gene46636:intron |
TTCAATTTCTCAAACAATTA+AGG | 0.237533 | 3.3:-23786558 | MS.gene46636:CDS |
CAATGAGCTTGGTATTCTTT+AGG | 0.255171 | 3.3:+23786708 | None:intergenic |
ATGGTCTATTGCAGTTAATT+TGG | 0.269737 | 3.3:-23785251 | MS.gene46636:intron |
TTCTTTAGGTCTTTAGGGTT+TGG | 0.285094 | 3.3:+23786722 | None:intergenic |
CATACAAGAATCGATGATTA+TGG | 0.329909 | 3.3:-23784791 | MS.gene46636:CDS |
TTGTGGTCCTGTTCTTGATC+AGG | 0.344109 | 3.3:-23784762 | MS.gene46636:CDS |
CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 3.3:-23786411 | MS.gene46636:CDS |
GTATCACCTTCTGGTATTCT+AGG | 0.367017 | 3.3:+23787817 | None:intergenic |
CGTTGGTTGAGTTGAAAATT+GGG | 0.367643 | 3.3:+23785197 | None:intergenic |
GGAGCAGTTGAGCTTGTTGC+TGG | 0.378795 | 3.3:-23785055 | MS.gene46636:CDS |
TATGTTTCATTACCTCTTGT+AGG | 0.391188 | 3.3:+23786269 | None:intergenic |
GATGATTATGGCTCTCTTTG+TGG | 0.396430 | 3.3:-23784779 | MS.gene46636:CDS |
TCATTACCTCTTGTAGGCAT+TGG | 0.412756 | 3.3:+23786275 | None:intergenic |
CTAAAGAATACCAAGCTCAT+TGG | 0.415170 | 3.3:-23786707 | MS.gene46636:CDS |
CTTTGAGTCGATAAATTTCA+CGG | 0.417506 | 3.3:+23785102 | None:intergenic |
GATCTCTACTCACCACTTCC+TGG | 0.417720 | 3.3:-23785148 | MS.gene46636:CDS |
ATCTCTGTGCCTCCACAAAC+TGG | 0.418520 | 3.3:-23786464 | MS.gene46636:CDS |
TCTTCAAAATGGAAACTTTG+AGG | 0.422549 | 3.3:-23786750 | MS.gene46636:CDS |
TTCAACGTCCCATTCGGACT+TGG | 0.425249 | 3.3:-23785076 | MS.gene46636:CDS |
CAAACATTGTATAGTCTCAA+TGG | 0.435698 | 3.3:-23786428 | MS.gene46636:CDS |
CTTTAATTCTTGGTGCATCA+AGG | 0.450617 | 3.3:-23786514 | MS.gene46636:CDS |
CATTGATTTCCCACTTTGGT+AGG | 0.451302 | 3.3:+23786675 | None:intergenic |
TTACCTCTTGTAGGCATTGG+AGG | 0.453519 | 3.3:+23786278 | None:intergenic |
CTACCAAAGTGGGAAATCAA+TGG | 0.473552 | 3.3:-23786674 | MS.gene46636:CDS |
TATGAATTTACCCTTCCCTT+CGG | 0.475138 | 3.3:+23784880 | None:intergenic |
AAAGTGGGAAATCAATGGTT+TGG | 0.477164 | 3.3:-23786669 | MS.gene46636:CDS |
AAGCATTTCAACGTCCCATT+CGG | 0.481052 | 3.3:-23785082 | MS.gene46636:CDS |
CAAATTCATATTTAAGCCAC+GGG | 0.484257 | 3.3:+23784728 | None:intergenic |
AAAGTTCCATTTAAATCCGA+AGG | 0.489665 | 3.3:-23784896 | MS.gene46636:CDS |
TCTACTCACCACTTCCTGGT+TGG | 0.493609 | 3.3:-23785144 | MS.gene46636:CDS |
ACTATAACCTGATCAAGAAC+AGG | 0.503775 | 3.3:+23784755 | None:intergenic |
TCCATTTAAATCCGAAGGGA+AGG | 0.505472 | 3.3:-23784891 | MS.gene46636:CDS |
AGAGATCTTCTTGTTGTGGT+GGG | 0.513960 | 3.3:+23785164 | None:intergenic |
GTTGAGTTGAAAATTGGGAA+TGG | 0.524305 | 3.3:+23785202 | None:intergenic |
CAACTGCTCCAAGTCCGAAT+GGG | 0.529354 | 3.3:+23785068 | None:intergenic |
AATGGACCCTCTTCAAAGCT+AGG | 0.531679 | 3.3:+23785220 | None:intergenic |
TCAAATTCATATTTAAGCCA+CGG | 0.531848 | 3.3:+23784727 | None:intergenic |
AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 3.3:-23786410 | MS.gene46636:CDS |
GCATGTGTTCCATGAGTCAC+TGG | 0.536293 | 3.3:+23786602 | None:intergenic |
ATTAAAGCATAGAGTTGACC+AGG | 0.539744 | 3.3:+23786530 | None:intergenic |
GTGACTGGTGGTCCTCAACC+AGG | 0.542126 | 3.3:-23786638 | MS.gene46636:CDS |
TAGAGATCTTCTTGTTGTGG+TGG | 0.543583 | 3.3:+23785163 | None:intergenic |
ATTGATTTCCCACTTTGGTA+GGG | 0.546034 | 3.3:+23786676 | None:intergenic |
TCAACTGCTCCAAGTCCGAA+TGG | 0.550994 | 3.3:+23785067 | None:intergenic |
TGTTCTCAGAATTTGTGCAA+TGG | 0.553333 | 3.3:+23785021 | None:intergenic |
CAAACAATTAAGGTCAAACC+TGG | 0.553729 | 3.3:-23786548 | MS.gene46636:CDS |
AAACCATTGATTTCCCACTT+TGG | 0.555992 | 3.3:+23786671 | None:intergenic |
GAAAAGAGAGACACCGCCAT+TGG | 0.567460 | 3.3:+23787892 | None:intergenic |
GAGTAGAGATCTTCTTGTTG+TGG | 0.568431 | 3.3:+23785160 | None:intergenic |
GGAACACATGCTGTGAGGCT+AGG | 0.569631 | 3.3:-23786590 | MS.gene46636:CDS |
TAGAATGTGAGTCTAGTCCT+TGG | 0.569730 | 3.3:+23784827 | None:intergenic |
CCATTTAAATCCGAAGGGAA+GGG | 0.572389 | 3.3:-23784890 | MS.gene46636:CDS |
AAAGGAACATCACCAGTTTG+TGG | 0.572851 | 3.3:+23786452 | None:intergenic |
TCAACAATCCAACCAGGAAG+TGG | 0.573834 | 3.3:+23785136 | None:intergenic |
TACCCTCCAATGCCTACAAG+AGG | 0.574344 | 3.3:-23786281 | MS.gene46636:intron |
TACAAAATCACATTCTCAGT+CGG | 0.574816 | 3.3:-23784983 | MS.gene46636:CDS |
GTAGGATCTTCTTGAACACC+AGG | 0.574842 | 3.3:+23786344 | None:intergenic |
AGACTATACAATGTTTGCAA+AGG | 0.576811 | 3.3:+23786434 | None:intergenic |
TACCTCTTGTAGGCATTGGA+GGG | 0.588583 | 3.3:+23786279 | None:intergenic |
ATAGCAATTGCATCAAGAAG+TGG | 0.589206 | 3.3:+23786314 | None:intergenic |
TCAATGGTGATGTTATTGCT+TGG | 0.590856 | 3.3:-23786412 | MS.gene46636:CDS |
TCAAGAAGTGGACCACAAGT+AGG | 0.610501 | 3.3:+23786326 | None:intergenic |
AAGTTCCATTTAAATCCGAA+GGG | 0.616315 | 3.3:-23784895 | MS.gene46636:CDS |
TCTAGGCTGAAGAGAAGCAA+AGG | 0.628225 | 3.3:+23787834 | None:intergenic |
TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 3.3:-23784948 | MS.gene46636:CDS |
GTTCAAGAAGATCCTACTTG+TGG | 0.647438 | 3.3:-23786338 | MS.gene46636:CDS |
GGTTTGGTAGAGTATGTGAC+TGG | 0.663787 | 3.3:-23786653 | MS.gene46636:CDS |
TTGGTAGAGTATGTGACTGG+TGG | 0.665537 | 3.3:-23786650 | MS.gene46636:CDS |
TGGTGGGAGTAAAACGCCGT+TGG | 0.674376 | 3.3:+23785180 | None:intergenic |
CTTCAGCCTAGAATACCAGA+AGG | 0.676116 | 3.3:-23787823 | MS.gene46636:intron |
AGTTTAAAGCTATTGCACCA+AGG | 0.686520 | 3.3:-23784844 | MS.gene46636:CDS |
GGAACATCACCAGTTTGTGG+AGG | 0.688731 | 3.3:+23786455 | None:intergenic |
TAGGATCTTCTTGAACACCA+GGG | 0.704341 | 3.3:+23786345 | None:intergenic |
CTCATGGAACACATGCTGTG+AGG | 0.712106 | 3.3:-23786595 | MS.gene46636:CDS |
AGAGACTCAACAATCCAACC+AGG | 0.715135 | 3.3:+23785130 | None:intergenic |
ACTGGTGGTCCTCAACCAGG+AGG | 0.747255 | 3.3:-23786635 | MS.gene46636:CDS |
AATTCATATTTAAGCCACGG+GGG | 0.757885 | 3.3:+23784730 | None:intergenic |
AAATTCATATTTAAGCCACG+GGG | 0.765384 | 3.3:+23784729 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATATAATAAATAAATGAAA+TGG | + | chr3.3:23784849-23784868 | None:intergenic | 10.0% |
!! | AACCAAAAAATTAATTGAAA+AGG | - | chr3.3:23786946-23786965 | MS.gene46636:intron | 15.0% |
!! | ACCAAAAAATTAATTGAAAA+GGG | - | chr3.3:23786947-23786966 | MS.gene46636:intron | 15.0% |
!! | TTAATAACAAAGTATGTATT+CGG | - | chr3.3:23786984-23787003 | MS.gene46636:intron | 15.0% |
!! | TTTAATAATAATGAATTTGG+TGG | - | chr3.3:23785314-23785333 | MS.gene46636:intron | 15.0% |
!!! | ATAAATAACGATTGATTTTT+AGG | + | chr3.3:23786891-23786910 | None:intergenic | 15.0% |
!!! | ATTTTTCTTAGCATTTTTTT+TGG | - | chr3.3:23787305-23787324 | MS.gene46636:intron | 15.0% |
!!! | TTATTTGAAAATGTTTTCTA+CGG | - | chr3.3:23786907-23786926 | MS.gene46636:intron | 15.0% |
!! | ATCAAAGTATAGTGAAAAAT+AGG | + | chr3.3:23785164-23785183 | None:intergenic | 20.0% |
!! | TAATAACAAAGTATGTATTC+GGG | - | chr3.3:23786985-23787004 | MS.gene46636:intron | 20.0% |
!! | TTCAATTTCTCAAACAATTA+AGG | - | chr3.3:23786070-23786089 | MS.gene46636:intron | 20.0% |
!!! | ATCAGTAAAATTTTCCTATT+TGG | - | chr3.3:23785460-23785479 | MS.gene46636:intron | 20.0% |
!!! | ATCGACTTCAAATATTTATT+TGG | - | chr3.3:23787014-23787033 | MS.gene46636:intron | 20.0% |
!!! | TCAGTAAAATTTTCCTATTT+GGG | - | chr3.3:23785461-23785480 | MS.gene46636:intron | 20.0% |
! | AATAAAAATTCTCCAAGCTA+AGG | + | chr3.3:23785000-23785019 | None:intergenic | 25.0% |
! | AGTATTTAACAATACAGATG+TGG | + | chr3.3:23786386-23786405 | None:intergenic | 25.0% |
! | ATACTTTGATCTAGTTGTTA+GGG | - | chr3.3:23785174-23785193 | MS.gene46636:CDS | 25.0% |
! | ATATGATAGATCAAAGAACA+TGG | + | chr3.3:23786857-23786876 | None:intergenic | 25.0% |
! | ATGGGTTCATTAAAAAATTG+TGG | - | chr3.3:23785204-23785223 | MS.gene46636:CDS | 25.0% |
! | ATGTCAAATAGTAACTATAG+CGG | - | chr3.3:23786598-23786617 | MS.gene46636:CDS | 25.0% |
! | GATAAAGCTGTTAATGATTA+TGG | - | chr3.3:23787358-23787377 | MS.gene46636:intron | 25.0% |
! | GCAAAAAAACATACATTTGA+GGG | + | chr3.3:23787041-23787060 | None:intergenic | 25.0% |
! | GTTCATTAAAAAATTGTGGT+TGG | - | chr3.3:23785208-23785227 | MS.gene46636:CDS | 25.0% |
! | TATACTTTGATCTAGTTGTT+AGG | - | chr3.3:23785173-23785192 | MS.gene46636:CDS | 25.0% |
! | TCTACATAATTGAACTTAAC+AGG | - | chr3.3:23786697-23786716 | MS.gene46636:CDS | 25.0% |
! | TGCAAAAAAACATACATTTG+AGG | + | chr3.3:23787042-23787061 | None:intergenic | 25.0% |
! | TTCTATGTAATCATATGTGT+CGG | - | chr3.3:23785612-23785631 | MS.gene46636:intron | 25.0% |
! | TTTGCAGTTTATCTTCAAAA+TGG | - | chr3.3:23785867-23785886 | MS.gene46636:intron | 25.0% |
!! | GCCCTTTTCAATTAATTTTT+TGG | + | chr3.3:23786951-23786970 | None:intergenic | 25.0% |
AAAGTTCCATTTAAATCCGA+AGG | - | chr3.3:23787732-23787751 | MS.gene46636:intron | 30.0% | |
AAGTTCCATTTAAATCCGAA+GGG | - | chr3.3:23787733-23787752 | MS.gene46636:intron | 30.0% | |
ACTTTCATATGTTCCATTGT+TGG | - | chr3.3:23784898-23784917 | MS.gene46636:CDS | 30.0% | |
AGACTATACAATGTTTGCAA+AGG | + | chr3.3:23786197-23786216 | None:intergenic | 30.0% | |
ATGGTCTATTGCAGTTAATT+TGG | - | chr3.3:23787377-23787396 | MS.gene46636:intron | 30.0% | |
CAAACATTGTATAGTCTCAA+TGG | - | chr3.3:23786200-23786219 | MS.gene46636:intron | 30.0% | |
CAACTCTATGCTTTAATTCT+TGG | - | chr3.3:23786104-23786123 | MS.gene46636:intron | 30.0% | |
CATACAAGAATCGATGATTA+TGG | - | chr3.3:23787837-23787856 | MS.gene46636:CDS | 30.0% | |
CTTTGAGTCGATAAATTTCA+CGG | + | chr3.3:23787529-23787548 | None:intergenic | 30.0% | |
GAGAAAAATGTATCCAACAA+TGG | + | chr3.3:23784914-23784933 | None:intergenic | 30.0% | |
TACAAAATCACATTCTCAGT+CGG | - | chr3.3:23787645-23787664 | MS.gene46636:intron | 30.0% | |
TACAACTATGTCGGATAAAT+TGG | + | chr3.3:23785417-23785436 | None:intergenic | 30.0% | |
TAGGACTTAATATGTCACAT+TGG | + | chr3.3:23785145-23785164 | None:intergenic | 30.0% | |
TATCCGACATAGTTGTAAAA+TGG | - | chr3.3:23785420-23785439 | MS.gene46636:intron | 30.0% | |
TATGTTTCATTACCTCTTGT+AGG | + | chr3.3:23786362-23786381 | None:intergenic | 30.0% | |
TCTTCAAAATGGAAACTTTG+AGG | - | chr3.3:23785878-23785897 | MS.gene46636:intron | 30.0% | |
TGGTATTCTTTAGGTCTTTA+GGG | + | chr3.3:23785914-23785933 | None:intergenic | 30.0% | |
TTAGTGCTTGTTTGATATCA+TGG | - | chr3.3:23786459-23786478 | MS.gene46636:CDS | 30.0% | |
TTCTCTCAAAGTTTCAACTT+AGG | + | chr3.3:23785078-23785097 | None:intergenic | 30.0% | |
TTGGTATTCTTTAGGTCTTT+AGG | + | chr3.3:23785915-23785934 | None:intergenic | 30.0% | |
TTGTAGCTTCAACAAAATCA+TGG | - | chr3.3:23786517-23786536 | MS.gene46636:CDS | 30.0% | |
! | AAAATTTTCCCTACCAAAGT+GGG | - | chr3.3:23785944-23785963 | MS.gene46636:intron | 30.0% |
! | ACTCTATTTAGTTCCTTTGA+AGG | - | chr3.3:23787099-23787118 | MS.gene46636:intron | 30.0% |
! | GCATAGATTTTGCAAAATCA+CGG | + | chr3.3:23786496-23786515 | None:intergenic | 30.0% |
! | GTTAATTTAGCTTCTTCACA+AGG | + | chr3.3:23785052-23785071 | None:intergenic | 30.0% |
! | TGACCATTTTACAACTATGT+CGG | + | chr3.3:23785426-23785445 | None:intergenic | 30.0% |
! | TTAGTTCCTTTGAAGGATAT+TGG | - | chr3.3:23787106-23787125 | MS.gene46636:intron | 30.0% |
! | TTCAAAGATGAAAGTGTGTT+TGG | + | chr3.3:23787073-23787092 | None:intergenic | 30.0% |
!! | AAAAATCCTAGCTTTGAAGA+GGG | - | chr3.3:23787402-23787421 | MS.gene46636:intron | 30.0% |
!! | GCTTTAAGATCTGTCATTTA+TGG | - | chr3.3:23785230-23785249 | MS.gene46636:CDS | 30.0% |
!! | TGCTTTTTAACGAAGGAAAA+AGG | + | chr3.3:23785734-23785753 | None:intergenic | 30.0% |
!!! | ATTTATGGTGAAGTTTTGAG+TGG | - | chr3.3:23785245-23785264 | MS.gene46636:intron | 30.0% |
!!! | GATTGATTTTTAGGACACAT+CGG | + | chr3.3:23786882-23786901 | None:intergenic | 30.0% |
!!! | TTTATGGTGAAGTTTTGAGT+GGG | - | chr3.3:23785246-23785265 | MS.gene46636:intron | 30.0% |
AAAGTGGGAAATCAATGGTT+TGG | - | chr3.3:23785959-23785978 | MS.gene46636:intron | 35.0% | |
AACAACTTTAGATCCTGTTC+CGG | + | chr3.3:23785821-23785840 | None:intergenic | 35.0% | |
AAGGATCCAATATCCTTCAA+AGG | + | chr3.3:23787115-23787134 | None:intergenic | 35.0% | |
ACTATAACCTGATCAAGAAC+AGG | + | chr3.3:23787876-23787895 | None:intergenic | 35.0% | |
ATAGCAATTGCATCAAGAAG+TGG | + | chr3.3:23786317-23786336 | None:intergenic | 35.0% | |
ATGCTTTGCACTCTTTGTTA+AGG | - | chr3.3:23785491-23785510 | MS.gene46636:intron | 35.0% | |
ATGTAGAATCCTAGAAGTGA+AGG | + | chr3.3:23786684-23786703 | None:intergenic | 35.0% | |
ATTAAAGCATAGAGTTGACC+AGG | + | chr3.3:23786101-23786120 | None:intergenic | 35.0% | |
CAAACAATTAAGGTCAAACC+TGG | - | chr3.3:23786080-23786099 | MS.gene46636:intron | 35.0% | |
CAATGAGCTTGGTATTCTTT+AGG | + | chr3.3:23785923-23785942 | None:intergenic | 35.0% | |
CTAAAGAATACCAAGCTCAT+TGG | - | chr3.3:23785921-23785940 | MS.gene46636:intron | 35.0% | |
GAGAGACTGAAATGATTGAA+TGG | - | chr3.3:23787206-23787225 | MS.gene46636:intron | 35.0% | |
TAACAAAGTATGTATTCGGG+TGG | - | chr3.3:23786988-23787007 | MS.gene46636:intron | 35.0% | |
TAGCTTCAACAAAATCATGG+TGG | - | chr3.3:23786520-23786539 | MS.gene46636:CDS | 35.0% | |
TATGAATTTACCCTTCCCTT+CGG | + | chr3.3:23787751-23787770 | None:intergenic | 35.0% | |
TCAGTCTCTCAAATCATTAG+CGG | + | chr3.3:23787196-23787215 | None:intergenic | 35.0% | |
TCTACGGAGTTTCTTTGTTA+TGG | - | chr3.3:23786923-23786942 | MS.gene46636:intron | 35.0% | |
TGTAGAATCCTAGAAGTGAA+GGG | + | chr3.3:23786683-23786702 | None:intergenic | 35.0% | |
TGTATGTGTCCATGTTTCAT+AGG | + | chr3.3:23787139-23787158 | None:intergenic | 35.0% | |
TGTTCTCAGAATTTGTGCAA+TGG | + | chr3.3:23787610-23787629 | None:intergenic | 35.0% | |
TTAAAAAGCAACCTCGATTG+AGG | - | chr3.3:23785744-23785763 | MS.gene46636:intron | 35.0% | |
! | AAAGTGACTTTTCATAACCC+TGG | - | chr3.3:23786266-23786285 | MS.gene46636:intron | 35.0% |
! | AATGGTGATGTTATTGCTTG+GGG | - | chr3.3:23786218-23786237 | MS.gene46636:intron | 35.0% |
! | AGTTGTTAGGGTCACTTTAT+GGG | - | chr3.3:23785186-23785205 | MS.gene46636:CDS | 35.0% |
! | AGTTTAAAGCTATTGCACCA+AGG | - | chr3.3:23787784-23787803 | MS.gene46636:intron | 35.0% |
! | ATCTCTGCTTTGTAGGTTTT+TGG | - | chr3.3:23785690-23785709 | MS.gene46636:intron | 35.0% |
! | ATTGATTTCCCACTTTGGTA+GGG | + | chr3.3:23785955-23785974 | None:intergenic | 35.0% |
! | CAATGGTGATGTTATTGCTT+GGG | - | chr3.3:23786217-23786236 | MS.gene46636:intron | 35.0% |
! | CCAATTTTCAACTCAACCAA+CGG | - | chr3.3:23787432-23787451 | MS.gene46636:intron | 35.0% |
! | CTTTAATTCTTGGTGCATCA+AGG | - | chr3.3:23786114-23786133 | MS.gene46636:intron | 35.0% |
! | GAAAATTTTCCCTACCAAAG+TGG | - | chr3.3:23785943-23785962 | MS.gene46636:intron | 35.0% |
! | GAACAGGATCTAAAGTTGTT+TGG | - | chr3.3:23785821-23785840 | MS.gene46636:intron | 35.0% |
! | GAATTGAATCTGAAACCTTG+AGG | - | chr3.3:23785095-23785114 | MS.gene46636:CDS | 35.0% |
! | GGAAAATTTTCCAATGAGCT+TGG | + | chr3.3:23785934-23785953 | None:intergenic | 35.0% |
! | TAGTTGTTAGGGTCACTTTA+TGG | - | chr3.3:23785185-23785204 | MS.gene46636:CDS | 35.0% |
! | TCAATGGTGATGTTATTGCT+TGG | - | chr3.3:23786216-23786235 | MS.gene46636:intron | 35.0% |
! | TTTTGTAGCACTAACACTTC+AGG | + | chr3.3:23787272-23787291 | None:intergenic | 35.0% |
!! | AAACCATTGATTTCCCACTT+TGG | + | chr3.3:23785960-23785979 | None:intergenic | 35.0% |
!! | CGTTGGTTGAGTTGAAAATT+GGG | + | chr3.3:23787434-23787453 | None:intergenic | 35.0% |
!! | GAAAAATCCTAGCTTTGAAG+AGG | - | chr3.3:23787401-23787420 | MS.gene46636:intron | 35.0% |
!! | GTTGAGTTGAAAATTGGGAA+TGG | + | chr3.3:23787429-23787448 | None:intergenic | 35.0% |
!! | TTCTTTAGGTCTTTAGGGTT+TGG | + | chr3.3:23785909-23785928 | None:intergenic | 35.0% |
!!! | ATGTTTTTTCCAGTGACTCA+TGG | - | chr3.3:23786017-23786036 | MS.gene46636:intron | 35.0% |
AAAGGAACATCACCAGTTTG+TGG | + | chr3.3:23786179-23786198 | None:intergenic | 40.0% | |
AAGCATTTCAACGTCCCATT+CGG | - | chr3.3:23787546-23787565 | MS.gene46636:intron | 40.0% | |
ACAAGCACTAAACAGCGTAT+TGG | + | chr3.3:23786450-23786469 | None:intergenic | 40.0% | |
AGCCTCAATATGAGACTTTC+TGG | - | chr3.3:23785791-23785810 | MS.gene46636:intron | 40.0% | |
AGTAGGATTGATACTGTGCT+TGG | - | chr3.3:23785271-23785290 | MS.gene46636:intron | 40.0% | |
CACATAACACACCTAAGTAG+TGG | + | chr3.3:23786793-23786812 | None:intergenic | 40.0% | |
CACCAGAAAGTCTCATATTG+AGG | + | chr3.3:23785796-23785815 | None:intergenic | 40.0% | |
CACTACTTAGGTGTGTTATG+TGG | - | chr3.3:23786791-23786810 | MS.gene46636:intron | 40.0% | |
CCATTTAAATCCGAAGGGAA+GGG | - | chr3.3:23787738-23787757 | MS.gene46636:intron | 40.0% | |
CTACCAAAGTGGGAAATCAA+TGG | - | chr3.3:23785954-23785973 | MS.gene46636:intron | 40.0% | |
CTATCAGTTCTCCACTACTT+AGG | - | chr3.3:23786779-23786798 | MS.gene46636:intron | 40.0% | |
GAGTAGAGATCTTCTTGTTG+TGG | + | chr3.3:23787471-23787490 | None:intergenic | 40.0% | |
GATGATTATGGCTCTCTTTG+TGG | - | chr3.3:23787849-23787868 | MS.gene46636:CDS | 40.0% | |
GATGCGAAAAATGGTTGTCA+TGG | - | chr3.3:23787669-23787688 | MS.gene46636:intron | 40.0% | |
GATTGAATGGAACCATGTGT+TGG | - | chr3.3:23787219-23787238 | MS.gene46636:intron | 40.0% | |
GGATCCTTACCTATGAAACA+TGG | - | chr3.3:23787127-23787146 | MS.gene46636:intron | 40.0% | |
GTATCACCTTCTGGTATTCT+AGG | + | chr3.3:23784814-23784833 | None:intergenic | 40.0% | |
GTGTCCATGTTTCATAGGTA+AGG | + | chr3.3:23787134-23787153 | None:intergenic | 40.0% | |
GTTCAAGAAGATCCTACTTG+TGG | - | chr3.3:23786290-23786309 | MS.gene46636:CDS | 40.0% | |
TAGAATGTGAGTCTAGTCCT+TGG | + | chr3.3:23787804-23787823 | None:intergenic | 40.0% | |
TAGATGTGAGTATCACCTTC+TGG | + | chr3.3:23784823-23784842 | None:intergenic | 40.0% | |
TAGGATCTTCTTGAACACCA+GGG | + | chr3.3:23786286-23786305 | None:intergenic | 40.0% | |
TCATCCATTATCCTCAATCG+AGG | + | chr3.3:23785758-23785777 | None:intergenic | 40.0% | |
TCATTACCTCTTGTAGGCAT+TGG | + | chr3.3:23786356-23786375 | None:intergenic | 40.0% | |
TCCAAGCTAAGGTACATGAA+AGG | + | chr3.3:23784989-23785008 | None:intergenic | 40.0% | |
TCCATTTAAATCCGAAGGGA+AGG | - | chr3.3:23787737-23787756 | MS.gene46636:intron | 40.0% | |
TGGTTGTCATGGATCAATGA+TGG | - | chr3.3:23787680-23787699 | MS.gene46636:intron | 40.0% | |
! | AAGCATTTGAGGTCCCAAAT+AGG | + | chr3.3:23785477-23785496 | None:intergenic | 40.0% |
! | AGAGATCTTCTTGTTGTGGT+GGG | + | chr3.3:23787467-23787486 | None:intergenic | 40.0% |
! | CAAAGAGTGCAAAGCATTTG+AGG | + | chr3.3:23785488-23785507 | None:intergenic | 40.0% |
! | CGACATTTTCGTGTTGTGTT+TGG | + | chr3.3:23785561-23785580 | None:intergenic | 40.0% |
! | TAGAGATCTTCTTGTTGTGG+TGG | + | chr3.3:23787468-23787487 | None:intergenic | 40.0% |
! | TATGAGACTTTCTGGTGTAC+CGG | - | chr3.3:23785799-23785818 | MS.gene46636:intron | 40.0% |
! | TTTTGTACCAAGTGTGTGTC+CGG | + | chr3.3:23786576-23786595 | None:intergenic | 40.0% |
!! | CATTGATTTCCCACTTTGGT+AGG | + | chr3.3:23785956-23785975 | None:intergenic | 40.0% |
!! | CCGTTGGTTGAGTTGAAAAT+TGG | + | chr3.3:23787435-23787454 | None:intergenic | 40.0% |
!! | TGGTGGGTTGGACAAAATTA+CGG | + | chr3.3:23786548-23786567 | None:intergenic | 40.0% |
!!! | GAAGTTTTGAGTGGGTAAGT+AGG | - | chr3.3:23785254-23785273 | MS.gene46636:intron | 40.0% |
!!! | TCGAGGTTGCTTTTTAACGA+AGG | + | chr3.3:23785741-23785760 | None:intergenic | 40.0% |
AAAAACATGCCTCCTGGTTG+AGG | + | chr3.3:23786005-23786024 | None:intergenic | 45.0% | |
AATGGACCCTCTTCAAAGCT+AGG | + | chr3.3:23787411-23787430 | None:intergenic | 45.0% | |
ACTGAGATACACCTCATTCG+AGG | - | chr3.3:23785664-23785683 | MS.gene46636:intron | 45.0% | |
ACTGGAAAAAACATGCCTCC+TGG | + | chr3.3:23786011-23786030 | None:intergenic | 45.0% | |
AGAGACTCAACAATCCAACC+AGG | + | chr3.3:23787501-23787520 | None:intergenic | 45.0% | |
ATAGGCATGGTATGTGCATC+AGG | + | chr3.3:23786659-23786678 | None:intergenic | 45.0% | |
ATCATTAGCGGTGACATGTC+AGG | + | chr3.3:23787184-23787203 | None:intergenic | 45.0% | |
CCCTTCCCTTCGGATTTAAA+TGG | + | chr3.3:23787741-23787760 | None:intergenic | 45.0% | |
CTTCAGCCTAGAATACCAGA+AGG | - | chr3.3:23784805-23784824 | MS.gene46636:CDS | 45.0% | |
GCAACCTCGATTGAGGATAA+TGG | - | chr3.3:23785751-23785770 | MS.gene46636:intron | 45.0% | |
GCCTTTCATGTACCTTAGCT+TGG | - | chr3.3:23784985-23785004 | MS.gene46636:CDS | 45.0% | |
GTAGGATCTTCTTGAACACC+AGG | + | chr3.3:23786287-23786306 | None:intergenic | 45.0% | |
TAGGCATGGTATGTGCATCA+GGG | + | chr3.3:23786658-23786677 | None:intergenic | 45.0% | |
TCAAACACGACACCAACACA+TGG | + | chr3.3:23787234-23787253 | None:intergenic | 45.0% | |
TCAACAATCCAACCAGGAAG+TGG | + | chr3.3:23787495-23787514 | None:intergenic | 45.0% | |
TCAAGAAGTGGACCACAAGT+AGG | + | chr3.3:23786305-23786324 | None:intergenic | 45.0% | |
TCAGTCGGAGATGCGAAAAA+TGG | - | chr3.3:23787660-23787679 | MS.gene46636:intron | 45.0% | |
TCTAGGCTGAAGAGAAGCAA+AGG | + | chr3.3:23784797-23784816 | None:intergenic | 45.0% | |
TTGGTAGAGTATGTGACTGG+TGG | - | chr3.3:23785978-23785997 | MS.gene46636:intron | 45.0% | |
TTGTGGTCCTGTTCTTGATC+AGG | - | chr3.3:23787866-23787885 | MS.gene46636:CDS | 45.0% | |
! | ATCCTAGAAGTGAAGGGCAT+AGG | + | chr3.3:23786677-23786696 | None:intergenic | 45.0% |
! | CATATGTGTCGGTGTCTTGT+TGG | - | chr3.3:23785623-23785642 | MS.gene46636:intron | 45.0% |
! | GGTTTGGTAGAGTATGTGAC+TGG | - | chr3.3:23785975-23785994 | MS.gene46636:intron | 45.0% |
! | TGAGAGTGTACTTCTCCTCA+AGG | + | chr3.3:23785113-23785132 | None:intergenic | 45.0% |
!! | GAGGAGTATCTCTGCTTTGT+AGG | - | chr3.3:23785683-23785702 | MS.gene46636:intron | 45.0% |
!! | TACCTCTTGTAGGCATTGGA+GGG | + | chr3.3:23786352-23786371 | None:intergenic | 45.0% |
!! | TTACCTCTTGTAGGCATTGG+AGG | + | chr3.3:23786353-23786372 | None:intergenic | 45.0% |
!! | AAATTTAATAATAATGAATT+TGG | - | chr3.3:23785311-23785330 | MS.gene46636:intron | 5.0% |
!! | CATAAAAAAAAAAAAAAAAA+AGG | + | chr3.3:23785342-23785361 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTTTTTTATG+AGG | - | chr3.3:23785342-23785361 | MS.gene46636:intron | 5.0% |
ATCTCTGTGCCTCCACAAAC+TGG | - | chr3.3:23786164-23786183 | MS.gene46636:intron | 50.0% | |
CAACTGCTCCAAGTCCGAAT+GGG | + | chr3.3:23787563-23787582 | None:intergenic | 50.0% | |
CAAGTGTGTGTCCGGTATCA+TGG | + | chr3.3:23786568-23786587 | None:intergenic | 50.0% | |
CATGATACCGGACACACACT+TGG | - | chr3.3:23786566-23786585 | MS.gene46636:CDS | 50.0% | |
CTCATGGAACACATGCTGTG+AGG | - | chr3.3:23786033-23786052 | MS.gene46636:intron | 50.0% | |
GATCTCTACTCACCACTTCC+TGG | - | chr3.3:23787480-23787499 | MS.gene46636:intron | 50.0% | |
GCAGAGATACTCCTCGAATG+AGG | + | chr3.3:23785678-23785697 | None:intergenic | 50.0% | |
GCATGTGTTCCATGAGTCAC+TGG | + | chr3.3:23786029-23786048 | None:intergenic | 50.0% | |
GGAACATCACCAGTTTGTGG+AGG | + | chr3.3:23786176-23786195 | None:intergenic | 50.0% | |
GGTGTATCTCAGTGTCAGAC+AGG | + | chr3.3:23785657-23785676 | None:intergenic | 50.0% | |
TACCCTCCAATGCCTACAAG+AGG | - | chr3.3:23786347-23786366 | MS.gene46636:CDS | 50.0% | |
TCAACTGCTCCAAGTCCGAA+TGG | + | chr3.3:23787564-23787583 | None:intergenic | 50.0% | |
TCTACTCACCACTTCCTGGT+TGG | - | chr3.3:23787484-23787503 | MS.gene46636:intron | 50.0% | |
TGCCTATGCCCTTCACTTCT+AGG | - | chr3.3:23786672-23786691 | MS.gene46636:CDS | 50.0% | |
TGTCCAACCCACCATGATAC+CGG | - | chr3.3:23786554-23786573 | MS.gene46636:CDS | 50.0% | |
TGTGTGTCCGGTATCATGGT+GGG | + | chr3.3:23786564-23786583 | None:intergenic | 50.0% | |
TTCAACGTCCCATTCGGACT+TGG | - | chr3.3:23787552-23787571 | MS.gene46636:intron | 50.0% | |
! | ACTTTCTGGTGTACCGGAAC+AGG | - | chr3.3:23785805-23785824 | MS.gene46636:intron | 50.0% |
! | AGAAGTGAAGGGCATAGGCA+TGG | + | chr3.3:23786672-23786691 | None:intergenic | 50.0% |
GGAACACATGCTGTGAGGCT+AGG | - | chr3.3:23786038-23786057 | MS.gene46636:intron | 55.0% | |
GTGTGTGTCCGGTATCATGG+TGG | + | chr3.3:23786565-23786584 | None:intergenic | 55.0% | |
TCAGGTTATAGTGTCCCCCG+TGG | - | chr3.3:23787884-23787903 | MS.gene46636:CDS | 55.0% | |
TGGTGGGAGTAAAACGCCGT+TGG | + | chr3.3:23787451-23787470 | None:intergenic | 55.0% | |
!! | GGAGCAGTTGAGCTTGTTGC+TGG | - | chr3.3:23787573-23787592 | MS.gene46636:intron | 55.0% |
!! | TGTCCGGTATCATGGTGGGT+TGG | + | chr3.3:23786560-23786579 | None:intergenic | 55.0% |
ACTGGTGGTCCTCAACCAGG+AGG | - | chr3.3:23785993-23786012 | MS.gene46636:intron | 60.0% | |
GTGACTGGTGGTCCTCAACC+AGG | - | chr3.3:23785990-23786009 | MS.gene46636:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 23784739 | 23787911 | 23784739 | ID=MS.gene46636 |
chr3.3 | mRNA | 23784739 | 23787911 | 23784739 | ID=MS.gene46636.t1;Parent=MS.gene46636 |
chr3.3 | exon | 23787824 | 23787911 | 23787824 | ID=MS.gene46636.t1.exon1;Parent=MS.gene46636.t1 |
chr3.3 | CDS | 23787824 | 23787911 | 23787824 | ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1 |
chr3.3 | exon | 23786282 | 23786776 | 23786282 | ID=MS.gene46636.t1.exon2;Parent=MS.gene46636.t1 |
chr3.3 | CDS | 23786282 | 23786776 | 23786282 | ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1 |
chr3.3 | exon | 23784739 | 23785259 | 23784739 | ID=MS.gene46636.t1.exon3;Parent=MS.gene46636.t1 |
chr3.3 | CDS | 23784739 | 23785259 | 23784739 | ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1 |
Gene Sequence |
Protein sequence |