AlfalfaGEDB | MS.gene46636

M. sativa cultivar XinJiangDaYe / MS.gene46636

KEGG: -
GO: -
PFAM: PF04862.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46636.t1	XP_013443065.1	99.5	367	2	0	1	367	1	367	1.10E-210	742.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46636.t1	A0A072TU53	99.5	367	2	0	1	367	1	367	8.0e-211	742.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050326	MS.gene46636	0.803582	3.25E-49	-1.69E-46
MS.gene050667	MS.gene46636	0.833631	4.77E-56	-1.69E-46
MS.gene051914	MS.gene46636	0.818846	1.58E-52	-1.69E-46
MS.gene052143	MS.gene46636	0.806398	8.39E-50	-1.69E-46
MS.gene052169	MS.gene46636	0.890906	6.45E-74	-1.69E-46
MS.gene052209	MS.gene46636	0.827923	1.20E-54	-1.69E-46
MS.gene052308	MS.gene46636	0.806116	9.61E-50	-1.69E-46
MS.gene052367	MS.gene46636	0.847866	8.82E-60	-1.69E-46
MS.gene052383	MS.gene46636	0.81903	1.44E-52	-1.69E-46
MS.gene053173	MS.gene46636	0.841831	3.74E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene015971	MS.gene46636	PPI
MS.gene51556	MS.gene46636	PPI
MS.gene60267	MS.gene46636	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46636.t1	MTR_0045s0110	99.455	367	2	0	1	367	1	367	0.0	747
MS.gene46636.t1	MTR_4g039720	78.533	368	78	1	1	367	4	371	0.0	625
MS.gene46636.t1	MTR_4g039680	80.381	367	72	0	1	367	1	367	0.0	623
MS.gene46636.t1	MTR_4g039740	78.202	367	80	0	1	367	1	367	0.0	619
MS.gene46636.t1	MTR_1g011800	56.325	332	143	2	32	361	37	368	3.47e-133	385
MS.gene46636.t1	MTR_2g103170	50.595	336	160	2	32	361	26	361	3.39e-119	350
MS.gene46636.t1	MTR_2g019600	43.544	333	187	1	32	363	33	365	8.69e-93	283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46636.t1	AT3G08030	67.816	348	111	1	21	367	18	365	4.24e-177	496
MS.gene46636.t1	AT3G08030	69.040	323	99	1	46	367	1	323	2.47e-168	473
MS.gene46636.t1	AT2G41800	61.960	347	128	3	22	364	21	367	6.14e-155	441
MS.gene46636.t1	AT2G41810	58.743	366	146	3	3	363	1	366	2.67e-152	434
MS.gene46636.t1	AT5G25460	54.286	350	159	1	13	361	12	361	4.96e-140	402
MS.gene46636.t1	AT5G11420	56.193	331	144	1	32	361	28	358	2.51e-139	400
MS.gene46636.t1	AT4G32460	55.589	331	146	1	32	361	27	357	1.27e-134	389
MS.gene46636.t1	AT4G32460	55.589	331	146	1	32	361	27	357	1.27e-134	389
MS.gene46636.t1	AT4G32460	55.836	317	139	1	46	361	1	317	1.94e-130	377
MS.gene46636.t1	AT4G32460	55.836	317	139	1	46	361	1	317	1.94e-130	377

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Find 84 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTGATTTCCCACTT+TGG	0.555992	3.3:+23786671	None:intergenic
AAAGGAACATCACCAGTTTG+TGG	0.572851	3.3:+23786452	None:intergenic
AAAGTGGGAAATCAATGGTT+TGG	0.477164	3.3:-23786669	MS.gene46636:CDS
AAAGTTCCATTTAAATCCGA+AGG	0.489665	3.3:-23784896	MS.gene46636:CDS
AAATTCATATTTAAGCCACG+GGG	0.765384	3.3:+23784729	None:intergenic
AAGCATTTCAACGTCCCATT+CGG	0.481052	3.3:-23785082	MS.gene46636:CDS
AAGTTCCATTTAAATCCGAA+GGG	0.616315	3.3:-23784895	MS.gene46636:CDS
AATGGACCCTCTTCAAAGCT+AGG	0.531679	3.3:+23785220	None:intergenic
AATGGTGATGTTATTGCTTG+GGG	0.532837	3.3:-23786410	MS.gene46636:CDS
AATTCATATTTAAGCCACGG+GGG	0.757885	3.3:+23784730	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTCCATTTAAATCCGA+AGG	-	chr3.3:23787732-23787751	MS.gene46636:intron	30.0%
AAGTTCCATTTAAATCCGAA+GGG	-	chr3.3:23787733-23787752	MS.gene46636:intron	30.0%
ACTTTCATATGTTCCATTGT+TGG	-	chr3.3:23784898-23784917	MS.gene46636:CDS	30.0%
AGACTATACAATGTTTGCAA+AGG	+	chr3.3:23786197-23786216	None:intergenic	30.0%
ATGGTCTATTGCAGTTAATT+TGG	-	chr3.3:23787377-23787396	MS.gene46636:intron	30.0%
CAAACATTGTATAGTCTCAA+TGG	-	chr3.3:23786200-23786219	MS.gene46636:intron	30.0%
CAACTCTATGCTTTAATTCT+TGG	-	chr3.3:23786104-23786123	MS.gene46636:intron	30.0%
CATACAAGAATCGATGATTA+TGG	-	chr3.3:23787837-23787856	MS.gene46636:CDS	30.0%
CTTTGAGTCGATAAATTTCA+CGG	+	chr3.3:23787529-23787548	None:intergenic	30.0%
GAGAAAAATGTATCCAACAA+TGG	+	chr3.3:23784914-23784933	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	23784739	23787911	23784739	ID=MS.gene46636
chr3.3	mRNA	23784739	23787911	23784739	ID=MS.gene46636.t1;Parent=MS.gene46636
chr3.3	exon	23787824	23787911	23787824	ID=MS.gene46636.t1.exon1;Parent=MS.gene46636.t1
chr3.3	CDS	23787824	23787911	23787824	ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1
chr3.3	exon	23786282	23786776	23786282	ID=MS.gene46636.t1.exon2;Parent=MS.gene46636.t1
chr3.3	CDS	23786282	23786776	23786282	ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1
chr3.3	exon	23784739	23785259	23784739	ID=MS.gene46636.t1.exon3;Parent=MS.gene46636.t1
chr3.3	CDS	23784739	23785259	23784739	ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1

Gene Sequence

>MS.gene46636

ATGGCGGTGTCTCTCTTTTCTTCAATCTCTCTAGCTTTCTTCTTTGCTTCTTCAGCCTTTGCTTCTCTTCAGCCTAGAATACCAGAAGGTGATACTCACATCTAAAACCATTTCATTTATTTATTATATCTATATAGCAATAACAATGTTACATTTTGTACTTTCATATGTTCCATTGTTGGATACATTTTTCTCATTCTTGTAACATGTAAGAGAAATAGTTATGCTTCATACATTTTTCTTTTTGCCTTTCATGTACCTTAGCTTGGAGAATTTTTATTTTTATTTTAAAGAAAAAAGTTTTTTTTTTCCTTGTGAAGAAGCTAAATTAACTCACCTAAGTTGAAACTTTGAGAGAATTGAATCTGAAACCTTGAGGAGAAGTACACTCTCAGTTCTCAAGCCAATGTGACATATTAAGTCCTATTTTTCACTATACTTTGATCTAGTTGTTAGGGTCACTTTATGGGTTCATTAAAAAATTGTGGTTGGCTTTAAGATCTGTCATTTATGGTGAAGTTTTGAGTGGGTAAGTAGGATTGATACTGTGCTTGGATCTGATTATTATTAACAAATTTAATAATAATGAATTTGGTGGTACCTTTTTTTTTTTTTTTTTTATGAGGTCTCAGCTCAAAGCTAAGAGTCTAATTTGTAAACTCAATGAACAAAGTTCCAATTTATCCGACATAGTTGTAAAATGGTCATTAATGTTATTTTAATCAGTAAAATTTTCCTATTTGGGACCTCAAATGCTTTGCACTCTTTGTTAAGGTATTGTTTGTTTTTGTCTATGAAGCACAAACTCAAACACAGACACCAAACACAACACGAAAATGTCGAGACTAATAATAATTTGAGAGAACGACATAATTCTATGTAATCATATGTGTCGGTGTCTTGTTGGACACGATACCTGTCTGACACTGAGATACACCTCATTCGAGGAGTATCTCTGCTTTGTAGGTTTTTGGTCATGTTAAGTCTTTACGCCTTTTTCCTTCGTTAAAAAGCAACCTCGATTGAGGATAATGGATGATTATAAACTACTTAGCCTCAATATGAGACTTTCTGGTGTACCGGAACAGGATCTAAAGTTGTTTGGTGTGTAATTTATTTTTTCTTATCTTTGCAGTTTATCTTCAAAATGGAAACTTTGAGGAGAAGCCAAACCCTAAAGACCTAAAGAATACCAAGCTCATTGGAAAATTTTCCCTACCAAAGTGGGAAATCAATGGTTTGGTAGAGTATGTGACTGGTGGTCCTCAACCAGGAGGCATGTTTTTTCCAGTGACTCATGGAACACATGCTGTGAGGCTAGGAAATGAAGCTTCAATTTCTCAAACAATTAAGGTCAAACCTGGTCAACTCTATGCTTTAATTCTTGGTGCATCAAGGACTTGTGCACAAGATGAAGTTTTGAGAATCTCTGTGCCTCCACAAACTGGTGATGTTCCTTTGCAAACATTGTATAGTCTCAATGGTGATGTTATTGCTTGGGGATTTAAAGCTACATCTAATGTTGCTAAAGTGACTTTTCATAACCCTGGTGTTCAAGAAGATCCTACTTGTGGTCCACTTCTTGATGCAATTGCTATCAGAGAGTTTTACCCTCCAATGCCTACAAGAGGTAATGAAACATATCCACATCTGTATTGTTAAATACTGTCTATAGCGTAGCAAACTTTGAACAATTTTCTATTATTCTCCAATACGCTGTTTAGTGCTTGTTTGATATCATGGTGAGTTTGACACCGTGATTTTGCAAAATCTATGCTTTGTAGCTTCAACAAAATCATGGTGGTGCCGTAATTTTGTCCAACCCACCATGATACCGGACACACACTTGGTACAAAATGATGTCAAATAGTAACTATAGCGGCGTTATAGCACTGTTTCGTAACAAAATTTGACAACCCTGATGCACATACCATGCCTATGCCCTTCACTTCTAGGATTCTACATAATTGAACTTAACAGGCACTTGATAAGAACTTGTTGAGATTAAGAATGTGAAAAATCTTATACTAACTGATAGATCTATCAGTTCTCCACTACTTAGGTGTGTTATGTGGATCTTGCTTATATTAATGAATTTTCAGATGAAGATTGTTTCCATGTTCTTTGATCTATCATATTTCCGATGTGTCCTAAAAATCAATCGTTATTTATTTGAAAATGTTTTCTACGGAGTTTCTTTGTTATGGAACCAAAAAATTAATTGAAAAGGGCAACATTTAATGCATTAATAACAAAGTATGTATTCGGGTGGCATATCGACTTCAAATATTTATTTGGTCCCTCAAATGTATGTTTTTTTGCAACTACAAACCAAACACACTTTCATCTTTGAACAATTAACTCTATTTAGTTCCTTTGAAGGATATTGGATCCTTACCTATGAAACATGGACACATACACAAATATTAGCACAATAATGATCCTGACATGTCACCGCTAATGATTTGAGAGACTGAAATGATTGAATGGAACCATGTGTTGGTGTCGTGTTTGATGAACATGTCTTTAGCCTGAAGTGTTAGTGCTACAAAATATGATCTTTCTGATTTTTCTTAGCATTTTTTTTGGTGTTTAGTGTATTTGAAACTCTCATTTTCTGATAAAGCTGTTAATGATTATGGTCTATTGCAGTTAATTTGGTGAAAAATCCTAGCTTTGAAGAGGGTCCATTCCCAATTTTCAACTCAACCAACGGCGTTTTACTCCCACCACAACAAGAAGATCTCTACTCACCACTTCCTGGTTGGATTGTTGAGTCTCTCAAAGCCGTGAAATTTATCGACTCAAAGCATTTCAACGTCCCATTCGGACTTGGAGCAGTTGAGCTTGTTGCTGGCAGAGAAAGCGCCATTGCACAAATTCTGAGAACAGAAGCTAACAAAGTCTACAAAATCACATTCTCAGTCGGAGATGCGAAAAATGGTTGTCATGGATCAATGATGGTTGAAGCTTTTGCTGCAAAAGATACTTTTAAAGTTCCATTTAAATCCGAAGGGAAGGGTAAATTCATAACTGTGAGTTTCAAGTTTAAAGCTATTGCACCAAGGACTAGACTCACATTCTACAGCTCTTTCTATCATACAAGAATCGATGATTATGGCTCTCTTTGTGGTCCTGTTCTTGATCAGGTTATAGTGTCCCCCGTGGCTTAA

Protein sequence

>MS.gene46636.t1

MAVSLFSSISLAFFFASSAFASLQPRIPEVYLQNGNFEEKPNPKDLKNTKLIGKFSLPKWEINGLVEYVTGGPQPGGMFFPVTHGTHAVRLGNEASISQTIKVKPGQLYALILGASRTCAQDEVLRISVPPQTGDVPLQTLYSLNGDVIAWGFKATSNVAKVTFHNPGVQEDPTCGPLLDAIAIREFYPPMPTRVNLVKNPSFEEGPFPIFNSTNGVLLPPQQEDLYSPLPGWIVESLKAVKFIDSKHFNVPFGLGAVELVAGRESAIAQILRTEANKVYKITFSVGDAKNGCHGSMMVEAFAAKDTFKVPFKSEGKGKFITVSFKFKAIAPRTRLTFYSSFYHTRIDDYGSLCGPVLDQVIVSPVA