AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46636


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46636.t1 MTR_0045s0110 99.455 367 2 0 1 367 1 367 0.0 747
MS.gene46636.t1 MTR_4g039720 78.533 368 78 1 1 367 4 371 0.0 625
MS.gene46636.t1 MTR_4g039680 80.381 367 72 0 1 367 1 367 0.0 623
MS.gene46636.t1 MTR_4g039740 78.202 367 80 0 1 367 1 367 0.0 619
MS.gene46636.t1 MTR_1g011800 56.325 332 143 2 32 361 37 368 3.47e-133 385
MS.gene46636.t1 MTR_2g103170 50.595 336 160 2 32 361 26 361 3.39e-119 350
MS.gene46636.t1 MTR_2g019600 43.544 333 187 1 32 363 33 365 8.69e-93 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46636.t1 AT3G08030 67.816 348 111 1 21 367 18 365 4.24e-177 496
MS.gene46636.t1 AT3G08030 69.040 323 99 1 46 367 1 323 2.47e-168 473
MS.gene46636.t1 AT2G41800 61.960 347 128 3 22 364 21 367 6.14e-155 441
MS.gene46636.t1 AT2G41810 58.743 366 146 3 3 363 1 366 2.67e-152 434
MS.gene46636.t1 AT5G25460 54.286 350 159 1 13 361 12 361 4.96e-140 402
MS.gene46636.t1 AT5G11420 56.193 331 144 1 32 361 28 358 2.51e-139 400
MS.gene46636.t1 AT4G32460 55.589 331 146 1 32 361 27 357 1.27e-134 389
MS.gene46636.t1 AT4G32460 55.589 331 146 1 32 361 27 357 1.27e-134 389
MS.gene46636.t1 AT4G32460 55.836 317 139 1 46 361 1 317 1.94e-130 377
MS.gene46636.t1 AT4G32460 55.836 317 139 1 46 361 1 317 1.94e-130 377
MS.gene46636.t1 AT1G80240 51.964 331 158 1 32 361 30 360 3.66e-121 355
MS.gene46636.t1 AT1G29980 41.834 349 193 2 25 363 34 382 6.51e-94 286
MS.gene46636.t1 AT1G29980 42.647 340 185 2 34 363 7 346 6.67e-94 285
MS.gene46636.t1 AT2G34510 43.155 336 185 2 34 363 43 378 1.48e-93 285
MS.gene46636.t1 AT2G34510 45.205 292 154 2 78 363 1 292 1.70e-85 262
MS.gene46636.t1 AT5G14150 28.732 355 220 11 31 367 22 361 7.02e-31 121
MS.gene46636.t1 AT5G14150 28.732 355 220 11 31 367 22 361 7.02e-31 121

Find 84 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTGGTTGAGTTGAAAAT+TGG 0.160332 3.3:+23785196 None:intergenic
TTGGTATTCTTTAGGTCTTT+AGG 0.165937 3.3:+23786716 None:intergenic
CCCTTCCCTTCGGATTTAAA+TGG 0.190979 3.3:+23784890 None:intergenic
CAACTCTATGCTTTAATTCT+TGG 0.196335 3.3:-23786524 MS.gene46636:CDS
TGGTATTCTTTAGGTCTTTA+GGG 0.221241 3.3:+23786717 None:intergenic
TTTGCAGTTTATCTTCAAAA+TGG 0.237288 3.3:-23786761 MS.gene46636:intron
TTCAATTTCTCAAACAATTA+AGG 0.237533 3.3:-23786558 MS.gene46636:CDS
CAATGAGCTTGGTATTCTTT+AGG 0.255171 3.3:+23786708 None:intergenic
ATGGTCTATTGCAGTTAATT+TGG 0.269737 3.3:-23785251 MS.gene46636:intron
TTCTTTAGGTCTTTAGGGTT+TGG 0.285094 3.3:+23786722 None:intergenic
CATACAAGAATCGATGATTA+TGG 0.329909 3.3:-23784791 MS.gene46636:CDS
TTGTGGTCCTGTTCTTGATC+AGG 0.344109 3.3:-23784762 MS.gene46636:CDS
CAATGGTGATGTTATTGCTT+GGG 0.353561 3.3:-23786411 MS.gene46636:CDS
GTATCACCTTCTGGTATTCT+AGG 0.367017 3.3:+23787817 None:intergenic
CGTTGGTTGAGTTGAAAATT+GGG 0.367643 3.3:+23785197 None:intergenic
GGAGCAGTTGAGCTTGTTGC+TGG 0.378795 3.3:-23785055 MS.gene46636:CDS
TATGTTTCATTACCTCTTGT+AGG 0.391188 3.3:+23786269 None:intergenic
GATGATTATGGCTCTCTTTG+TGG 0.396430 3.3:-23784779 MS.gene46636:CDS
TCATTACCTCTTGTAGGCAT+TGG 0.412756 3.3:+23786275 None:intergenic
CTAAAGAATACCAAGCTCAT+TGG 0.415170 3.3:-23786707 MS.gene46636:CDS
CTTTGAGTCGATAAATTTCA+CGG 0.417506 3.3:+23785102 None:intergenic
GATCTCTACTCACCACTTCC+TGG 0.417720 3.3:-23785148 MS.gene46636:CDS
ATCTCTGTGCCTCCACAAAC+TGG 0.418520 3.3:-23786464 MS.gene46636:CDS
TCTTCAAAATGGAAACTTTG+AGG 0.422549 3.3:-23786750 MS.gene46636:CDS
TTCAACGTCCCATTCGGACT+TGG 0.425249 3.3:-23785076 MS.gene46636:CDS
CAAACATTGTATAGTCTCAA+TGG 0.435698 3.3:-23786428 MS.gene46636:CDS
CTTTAATTCTTGGTGCATCA+AGG 0.450617 3.3:-23786514 MS.gene46636:CDS
CATTGATTTCCCACTTTGGT+AGG 0.451302 3.3:+23786675 None:intergenic
TTACCTCTTGTAGGCATTGG+AGG 0.453519 3.3:+23786278 None:intergenic
CTACCAAAGTGGGAAATCAA+TGG 0.473552 3.3:-23786674 MS.gene46636:CDS
TATGAATTTACCCTTCCCTT+CGG 0.475138 3.3:+23784880 None:intergenic
AAAGTGGGAAATCAATGGTT+TGG 0.477164 3.3:-23786669 MS.gene46636:CDS
AAGCATTTCAACGTCCCATT+CGG 0.481052 3.3:-23785082 MS.gene46636:CDS
CAAATTCATATTTAAGCCAC+GGG 0.484257 3.3:+23784728 None:intergenic
AAAGTTCCATTTAAATCCGA+AGG 0.489665 3.3:-23784896 MS.gene46636:CDS
TCTACTCACCACTTCCTGGT+TGG 0.493609 3.3:-23785144 MS.gene46636:CDS
ACTATAACCTGATCAAGAAC+AGG 0.503775 3.3:+23784755 None:intergenic
TCCATTTAAATCCGAAGGGA+AGG 0.505472 3.3:-23784891 MS.gene46636:CDS
AGAGATCTTCTTGTTGTGGT+GGG 0.513960 3.3:+23785164 None:intergenic
GTTGAGTTGAAAATTGGGAA+TGG 0.524305 3.3:+23785202 None:intergenic
CAACTGCTCCAAGTCCGAAT+GGG 0.529354 3.3:+23785068 None:intergenic
AATGGACCCTCTTCAAAGCT+AGG 0.531679 3.3:+23785220 None:intergenic
TCAAATTCATATTTAAGCCA+CGG 0.531848 3.3:+23784727 None:intergenic
AATGGTGATGTTATTGCTTG+GGG 0.532837 3.3:-23786410 MS.gene46636:CDS
GCATGTGTTCCATGAGTCAC+TGG 0.536293 3.3:+23786602 None:intergenic
ATTAAAGCATAGAGTTGACC+AGG 0.539744 3.3:+23786530 None:intergenic
GTGACTGGTGGTCCTCAACC+AGG 0.542126 3.3:-23786638 MS.gene46636:CDS
TAGAGATCTTCTTGTTGTGG+TGG 0.543583 3.3:+23785163 None:intergenic
ATTGATTTCCCACTTTGGTA+GGG 0.546034 3.3:+23786676 None:intergenic
TCAACTGCTCCAAGTCCGAA+TGG 0.550994 3.3:+23785067 None:intergenic
TGTTCTCAGAATTTGTGCAA+TGG 0.553333 3.3:+23785021 None:intergenic
CAAACAATTAAGGTCAAACC+TGG 0.553729 3.3:-23786548 MS.gene46636:CDS
AAACCATTGATTTCCCACTT+TGG 0.555992 3.3:+23786671 None:intergenic
GAAAAGAGAGACACCGCCAT+TGG 0.567460 3.3:+23787892 None:intergenic
GAGTAGAGATCTTCTTGTTG+TGG 0.568431 3.3:+23785160 None:intergenic
GGAACACATGCTGTGAGGCT+AGG 0.569631 3.3:-23786590 MS.gene46636:CDS
TAGAATGTGAGTCTAGTCCT+TGG 0.569730 3.3:+23784827 None:intergenic
CCATTTAAATCCGAAGGGAA+GGG 0.572389 3.3:-23784890 MS.gene46636:CDS
AAAGGAACATCACCAGTTTG+TGG 0.572851 3.3:+23786452 None:intergenic
TCAACAATCCAACCAGGAAG+TGG 0.573834 3.3:+23785136 None:intergenic
TACCCTCCAATGCCTACAAG+AGG 0.574344 3.3:-23786281 MS.gene46636:intron
TACAAAATCACATTCTCAGT+CGG 0.574816 3.3:-23784983 MS.gene46636:CDS
GTAGGATCTTCTTGAACACC+AGG 0.574842 3.3:+23786344 None:intergenic
AGACTATACAATGTTTGCAA+AGG 0.576811 3.3:+23786434 None:intergenic
TACCTCTTGTAGGCATTGGA+GGG 0.588583 3.3:+23786279 None:intergenic
ATAGCAATTGCATCAAGAAG+TGG 0.589206 3.3:+23786314 None:intergenic
TCAATGGTGATGTTATTGCT+TGG 0.590856 3.3:-23786412 MS.gene46636:CDS
TCAAGAAGTGGACCACAAGT+AGG 0.610501 3.3:+23786326 None:intergenic
AAGTTCCATTTAAATCCGAA+GGG 0.616315 3.3:-23784895 MS.gene46636:CDS
TCTAGGCTGAAGAGAAGCAA+AGG 0.628225 3.3:+23787834 None:intergenic
TGGTTGTCATGGATCAATGA+TGG 0.645175 3.3:-23784948 MS.gene46636:CDS
GTTCAAGAAGATCCTACTTG+TGG 0.647438 3.3:-23786338 MS.gene46636:CDS
GGTTTGGTAGAGTATGTGAC+TGG 0.663787 3.3:-23786653 MS.gene46636:CDS
TTGGTAGAGTATGTGACTGG+TGG 0.665537 3.3:-23786650 MS.gene46636:CDS
TGGTGGGAGTAAAACGCCGT+TGG 0.674376 3.3:+23785180 None:intergenic
CTTCAGCCTAGAATACCAGA+AGG 0.676116 3.3:-23787823 MS.gene46636:intron
AGTTTAAAGCTATTGCACCA+AGG 0.686520 3.3:-23784844 MS.gene46636:CDS
GGAACATCACCAGTTTGTGG+AGG 0.688731 3.3:+23786455 None:intergenic
TAGGATCTTCTTGAACACCA+GGG 0.704341 3.3:+23786345 None:intergenic
CTCATGGAACACATGCTGTG+AGG 0.712106 3.3:-23786595 MS.gene46636:CDS
AGAGACTCAACAATCCAACC+AGG 0.715135 3.3:+23785130 None:intergenic
ACTGGTGGTCCTCAACCAGG+AGG 0.747255 3.3:-23786635 MS.gene46636:CDS
AATTCATATTTAAGCCACGG+GGG 0.757885 3.3:+23784730 None:intergenic
AAATTCATATTTAAGCCACG+GGG 0.765384 3.3:+23784729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATAATAAATAAATGAAA+TGG + chr3.3:23784849-23784868 None:intergenic 10.0%
!! AACCAAAAAATTAATTGAAA+AGG - chr3.3:23786946-23786965 MS.gene46636:intron 15.0%
!! ACCAAAAAATTAATTGAAAA+GGG - chr3.3:23786947-23786966 MS.gene46636:intron 15.0%
!! TTAATAACAAAGTATGTATT+CGG - chr3.3:23786984-23787003 MS.gene46636:intron 15.0%
!! TTTAATAATAATGAATTTGG+TGG - chr3.3:23785314-23785333 MS.gene46636:intron 15.0%
!!! ATAAATAACGATTGATTTTT+AGG + chr3.3:23786891-23786910 None:intergenic 15.0%
!!! ATTTTTCTTAGCATTTTTTT+TGG - chr3.3:23787305-23787324 MS.gene46636:intron 15.0%
!!! TTATTTGAAAATGTTTTCTA+CGG - chr3.3:23786907-23786926 MS.gene46636:intron 15.0%
!! ATCAAAGTATAGTGAAAAAT+AGG + chr3.3:23785164-23785183 None:intergenic 20.0%
!! TAATAACAAAGTATGTATTC+GGG - chr3.3:23786985-23787004 MS.gene46636:intron 20.0%
!! TTCAATTTCTCAAACAATTA+AGG - chr3.3:23786070-23786089 MS.gene46636:intron 20.0%
!!! ATCAGTAAAATTTTCCTATT+TGG - chr3.3:23785460-23785479 MS.gene46636:intron 20.0%
!!! ATCGACTTCAAATATTTATT+TGG - chr3.3:23787014-23787033 MS.gene46636:intron 20.0%
!!! TCAGTAAAATTTTCCTATTT+GGG - chr3.3:23785461-23785480 MS.gene46636:intron 20.0%
! AATAAAAATTCTCCAAGCTA+AGG + chr3.3:23785000-23785019 None:intergenic 25.0%
! AGTATTTAACAATACAGATG+TGG + chr3.3:23786386-23786405 None:intergenic 25.0%
! ATACTTTGATCTAGTTGTTA+GGG - chr3.3:23785174-23785193 MS.gene46636:CDS 25.0%
! ATATGATAGATCAAAGAACA+TGG + chr3.3:23786857-23786876 None:intergenic 25.0%
! ATGGGTTCATTAAAAAATTG+TGG - chr3.3:23785204-23785223 MS.gene46636:CDS 25.0%
! ATGTCAAATAGTAACTATAG+CGG - chr3.3:23786598-23786617 MS.gene46636:CDS 25.0%
! GATAAAGCTGTTAATGATTA+TGG - chr3.3:23787358-23787377 MS.gene46636:intron 25.0%
! GCAAAAAAACATACATTTGA+GGG + chr3.3:23787041-23787060 None:intergenic 25.0%
! GTTCATTAAAAAATTGTGGT+TGG - chr3.3:23785208-23785227 MS.gene46636:CDS 25.0%
! TATACTTTGATCTAGTTGTT+AGG - chr3.3:23785173-23785192 MS.gene46636:CDS 25.0%
! TCTACATAATTGAACTTAAC+AGG - chr3.3:23786697-23786716 MS.gene46636:CDS 25.0%
! TGCAAAAAAACATACATTTG+AGG + chr3.3:23787042-23787061 None:intergenic 25.0%
! TTCTATGTAATCATATGTGT+CGG - chr3.3:23785612-23785631 MS.gene46636:intron 25.0%
! TTTGCAGTTTATCTTCAAAA+TGG - chr3.3:23785867-23785886 MS.gene46636:intron 25.0%
!! GCCCTTTTCAATTAATTTTT+TGG + chr3.3:23786951-23786970 None:intergenic 25.0%
AAAGTTCCATTTAAATCCGA+AGG - chr3.3:23787732-23787751 MS.gene46636:intron 30.0%
AAGTTCCATTTAAATCCGAA+GGG - chr3.3:23787733-23787752 MS.gene46636:intron 30.0%
ACTTTCATATGTTCCATTGT+TGG - chr3.3:23784898-23784917 MS.gene46636:CDS 30.0%
AGACTATACAATGTTTGCAA+AGG + chr3.3:23786197-23786216 None:intergenic 30.0%
ATGGTCTATTGCAGTTAATT+TGG - chr3.3:23787377-23787396 MS.gene46636:intron 30.0%
CAAACATTGTATAGTCTCAA+TGG - chr3.3:23786200-23786219 MS.gene46636:intron 30.0%
CAACTCTATGCTTTAATTCT+TGG - chr3.3:23786104-23786123 MS.gene46636:intron 30.0%
CATACAAGAATCGATGATTA+TGG - chr3.3:23787837-23787856 MS.gene46636:CDS 30.0%
CTTTGAGTCGATAAATTTCA+CGG + chr3.3:23787529-23787548 None:intergenic 30.0%
GAGAAAAATGTATCCAACAA+TGG + chr3.3:23784914-23784933 None:intergenic 30.0%
TACAAAATCACATTCTCAGT+CGG - chr3.3:23787645-23787664 MS.gene46636:intron 30.0%
TACAACTATGTCGGATAAAT+TGG + chr3.3:23785417-23785436 None:intergenic 30.0%
TAGGACTTAATATGTCACAT+TGG + chr3.3:23785145-23785164 None:intergenic 30.0%
TATCCGACATAGTTGTAAAA+TGG - chr3.3:23785420-23785439 MS.gene46636:intron 30.0%
TATGTTTCATTACCTCTTGT+AGG + chr3.3:23786362-23786381 None:intergenic 30.0%
TCTTCAAAATGGAAACTTTG+AGG - chr3.3:23785878-23785897 MS.gene46636:intron 30.0%
TGGTATTCTTTAGGTCTTTA+GGG + chr3.3:23785914-23785933 None:intergenic 30.0%
TTAGTGCTTGTTTGATATCA+TGG - chr3.3:23786459-23786478 MS.gene46636:CDS 30.0%
TTCTCTCAAAGTTTCAACTT+AGG + chr3.3:23785078-23785097 None:intergenic 30.0%
TTGGTATTCTTTAGGTCTTT+AGG + chr3.3:23785915-23785934 None:intergenic 30.0%
TTGTAGCTTCAACAAAATCA+TGG - chr3.3:23786517-23786536 MS.gene46636:CDS 30.0%
! AAAATTTTCCCTACCAAAGT+GGG - chr3.3:23785944-23785963 MS.gene46636:intron 30.0%
! ACTCTATTTAGTTCCTTTGA+AGG - chr3.3:23787099-23787118 MS.gene46636:intron 30.0%
! GCATAGATTTTGCAAAATCA+CGG + chr3.3:23786496-23786515 None:intergenic 30.0%
! GTTAATTTAGCTTCTTCACA+AGG + chr3.3:23785052-23785071 None:intergenic 30.0%
! TGACCATTTTACAACTATGT+CGG + chr3.3:23785426-23785445 None:intergenic 30.0%
! TTAGTTCCTTTGAAGGATAT+TGG - chr3.3:23787106-23787125 MS.gene46636:intron 30.0%
! TTCAAAGATGAAAGTGTGTT+TGG + chr3.3:23787073-23787092 None:intergenic 30.0%
!! AAAAATCCTAGCTTTGAAGA+GGG - chr3.3:23787402-23787421 MS.gene46636:intron 30.0%
!! GCTTTAAGATCTGTCATTTA+TGG - chr3.3:23785230-23785249 MS.gene46636:CDS 30.0%
!! TGCTTTTTAACGAAGGAAAA+AGG + chr3.3:23785734-23785753 None:intergenic 30.0%
!!! ATTTATGGTGAAGTTTTGAG+TGG - chr3.3:23785245-23785264 MS.gene46636:intron 30.0%
!!! GATTGATTTTTAGGACACAT+CGG + chr3.3:23786882-23786901 None:intergenic 30.0%
!!! TTTATGGTGAAGTTTTGAGT+GGG - chr3.3:23785246-23785265 MS.gene46636:intron 30.0%
AAAGTGGGAAATCAATGGTT+TGG - chr3.3:23785959-23785978 MS.gene46636:intron 35.0%
AACAACTTTAGATCCTGTTC+CGG + chr3.3:23785821-23785840 None:intergenic 35.0%
AAGGATCCAATATCCTTCAA+AGG + chr3.3:23787115-23787134 None:intergenic 35.0%
ACTATAACCTGATCAAGAAC+AGG + chr3.3:23787876-23787895 None:intergenic 35.0%
ATAGCAATTGCATCAAGAAG+TGG + chr3.3:23786317-23786336 None:intergenic 35.0%
ATGCTTTGCACTCTTTGTTA+AGG - chr3.3:23785491-23785510 MS.gene46636:intron 35.0%
ATGTAGAATCCTAGAAGTGA+AGG + chr3.3:23786684-23786703 None:intergenic 35.0%
ATTAAAGCATAGAGTTGACC+AGG + chr3.3:23786101-23786120 None:intergenic 35.0%
CAAACAATTAAGGTCAAACC+TGG - chr3.3:23786080-23786099 MS.gene46636:intron 35.0%
CAATGAGCTTGGTATTCTTT+AGG + chr3.3:23785923-23785942 None:intergenic 35.0%
CTAAAGAATACCAAGCTCAT+TGG - chr3.3:23785921-23785940 MS.gene46636:intron 35.0%
GAGAGACTGAAATGATTGAA+TGG - chr3.3:23787206-23787225 MS.gene46636:intron 35.0%
TAACAAAGTATGTATTCGGG+TGG - chr3.3:23786988-23787007 MS.gene46636:intron 35.0%
TAGCTTCAACAAAATCATGG+TGG - chr3.3:23786520-23786539 MS.gene46636:CDS 35.0%
TATGAATTTACCCTTCCCTT+CGG + chr3.3:23787751-23787770 None:intergenic 35.0%
TCAGTCTCTCAAATCATTAG+CGG + chr3.3:23787196-23787215 None:intergenic 35.0%
TCTACGGAGTTTCTTTGTTA+TGG - chr3.3:23786923-23786942 MS.gene46636:intron 35.0%
TGTAGAATCCTAGAAGTGAA+GGG + chr3.3:23786683-23786702 None:intergenic 35.0%
TGTATGTGTCCATGTTTCAT+AGG + chr3.3:23787139-23787158 None:intergenic 35.0%
TGTTCTCAGAATTTGTGCAA+TGG + chr3.3:23787610-23787629 None:intergenic 35.0%
TTAAAAAGCAACCTCGATTG+AGG - chr3.3:23785744-23785763 MS.gene46636:intron 35.0%
! AAAGTGACTTTTCATAACCC+TGG - chr3.3:23786266-23786285 MS.gene46636:intron 35.0%
! AATGGTGATGTTATTGCTTG+GGG - chr3.3:23786218-23786237 MS.gene46636:intron 35.0%
! AGTTGTTAGGGTCACTTTAT+GGG - chr3.3:23785186-23785205 MS.gene46636:CDS 35.0%
! AGTTTAAAGCTATTGCACCA+AGG - chr3.3:23787784-23787803 MS.gene46636:intron 35.0%
! ATCTCTGCTTTGTAGGTTTT+TGG - chr3.3:23785690-23785709 MS.gene46636:intron 35.0%
! ATTGATTTCCCACTTTGGTA+GGG + chr3.3:23785955-23785974 None:intergenic 35.0%
! CAATGGTGATGTTATTGCTT+GGG - chr3.3:23786217-23786236 MS.gene46636:intron 35.0%
! CCAATTTTCAACTCAACCAA+CGG - chr3.3:23787432-23787451 MS.gene46636:intron 35.0%
! CTTTAATTCTTGGTGCATCA+AGG - chr3.3:23786114-23786133 MS.gene46636:intron 35.0%
! GAAAATTTTCCCTACCAAAG+TGG - chr3.3:23785943-23785962 MS.gene46636:intron 35.0%
! GAACAGGATCTAAAGTTGTT+TGG - chr3.3:23785821-23785840 MS.gene46636:intron 35.0%
! GAATTGAATCTGAAACCTTG+AGG - chr3.3:23785095-23785114 MS.gene46636:CDS 35.0%
! GGAAAATTTTCCAATGAGCT+TGG + chr3.3:23785934-23785953 None:intergenic 35.0%
! TAGTTGTTAGGGTCACTTTA+TGG - chr3.3:23785185-23785204 MS.gene46636:CDS 35.0%
! TCAATGGTGATGTTATTGCT+TGG - chr3.3:23786216-23786235 MS.gene46636:intron 35.0%
! TTTTGTAGCACTAACACTTC+AGG + chr3.3:23787272-23787291 None:intergenic 35.0%
!! AAACCATTGATTTCCCACTT+TGG + chr3.3:23785960-23785979 None:intergenic 35.0%
!! CGTTGGTTGAGTTGAAAATT+GGG + chr3.3:23787434-23787453 None:intergenic 35.0%
!! GAAAAATCCTAGCTTTGAAG+AGG - chr3.3:23787401-23787420 MS.gene46636:intron 35.0%
!! GTTGAGTTGAAAATTGGGAA+TGG + chr3.3:23787429-23787448 None:intergenic 35.0%
!! TTCTTTAGGTCTTTAGGGTT+TGG + chr3.3:23785909-23785928 None:intergenic 35.0%
!!! ATGTTTTTTCCAGTGACTCA+TGG - chr3.3:23786017-23786036 MS.gene46636:intron 35.0%
AAAGGAACATCACCAGTTTG+TGG + chr3.3:23786179-23786198 None:intergenic 40.0%
AAGCATTTCAACGTCCCATT+CGG - chr3.3:23787546-23787565 MS.gene46636:intron 40.0%
ACAAGCACTAAACAGCGTAT+TGG + chr3.3:23786450-23786469 None:intergenic 40.0%
AGCCTCAATATGAGACTTTC+TGG - chr3.3:23785791-23785810 MS.gene46636:intron 40.0%
AGTAGGATTGATACTGTGCT+TGG - chr3.3:23785271-23785290 MS.gene46636:intron 40.0%
CACATAACACACCTAAGTAG+TGG + chr3.3:23786793-23786812 None:intergenic 40.0%
CACCAGAAAGTCTCATATTG+AGG + chr3.3:23785796-23785815 None:intergenic 40.0%
CACTACTTAGGTGTGTTATG+TGG - chr3.3:23786791-23786810 MS.gene46636:intron 40.0%
CCATTTAAATCCGAAGGGAA+GGG - chr3.3:23787738-23787757 MS.gene46636:intron 40.0%
CTACCAAAGTGGGAAATCAA+TGG - chr3.3:23785954-23785973 MS.gene46636:intron 40.0%
CTATCAGTTCTCCACTACTT+AGG - chr3.3:23786779-23786798 MS.gene46636:intron 40.0%
GAGTAGAGATCTTCTTGTTG+TGG + chr3.3:23787471-23787490 None:intergenic 40.0%
GATGATTATGGCTCTCTTTG+TGG - chr3.3:23787849-23787868 MS.gene46636:CDS 40.0%
GATGCGAAAAATGGTTGTCA+TGG - chr3.3:23787669-23787688 MS.gene46636:intron 40.0%
GATTGAATGGAACCATGTGT+TGG - chr3.3:23787219-23787238 MS.gene46636:intron 40.0%
GGATCCTTACCTATGAAACA+TGG - chr3.3:23787127-23787146 MS.gene46636:intron 40.0%
GTATCACCTTCTGGTATTCT+AGG + chr3.3:23784814-23784833 None:intergenic 40.0%
GTGTCCATGTTTCATAGGTA+AGG + chr3.3:23787134-23787153 None:intergenic 40.0%
GTTCAAGAAGATCCTACTTG+TGG - chr3.3:23786290-23786309 MS.gene46636:CDS 40.0%
TAGAATGTGAGTCTAGTCCT+TGG + chr3.3:23787804-23787823 None:intergenic 40.0%
TAGATGTGAGTATCACCTTC+TGG + chr3.3:23784823-23784842 None:intergenic 40.0%
TAGGATCTTCTTGAACACCA+GGG + chr3.3:23786286-23786305 None:intergenic 40.0%
TCATCCATTATCCTCAATCG+AGG + chr3.3:23785758-23785777 None:intergenic 40.0%
TCATTACCTCTTGTAGGCAT+TGG + chr3.3:23786356-23786375 None:intergenic 40.0%
TCCAAGCTAAGGTACATGAA+AGG + chr3.3:23784989-23785008 None:intergenic 40.0%
TCCATTTAAATCCGAAGGGA+AGG - chr3.3:23787737-23787756 MS.gene46636:intron 40.0%
TGGTTGTCATGGATCAATGA+TGG - chr3.3:23787680-23787699 MS.gene46636:intron 40.0%
! AAGCATTTGAGGTCCCAAAT+AGG + chr3.3:23785477-23785496 None:intergenic 40.0%
! AGAGATCTTCTTGTTGTGGT+GGG + chr3.3:23787467-23787486 None:intergenic 40.0%
! CAAAGAGTGCAAAGCATTTG+AGG + chr3.3:23785488-23785507 None:intergenic 40.0%
! CGACATTTTCGTGTTGTGTT+TGG + chr3.3:23785561-23785580 None:intergenic 40.0%
! TAGAGATCTTCTTGTTGTGG+TGG + chr3.3:23787468-23787487 None:intergenic 40.0%
! TATGAGACTTTCTGGTGTAC+CGG - chr3.3:23785799-23785818 MS.gene46636:intron 40.0%
! TTTTGTACCAAGTGTGTGTC+CGG + chr3.3:23786576-23786595 None:intergenic 40.0%
!! CATTGATTTCCCACTTTGGT+AGG + chr3.3:23785956-23785975 None:intergenic 40.0%
!! CCGTTGGTTGAGTTGAAAAT+TGG + chr3.3:23787435-23787454 None:intergenic 40.0%
!! TGGTGGGTTGGACAAAATTA+CGG + chr3.3:23786548-23786567 None:intergenic 40.0%
!!! GAAGTTTTGAGTGGGTAAGT+AGG - chr3.3:23785254-23785273 MS.gene46636:intron 40.0%
!!! TCGAGGTTGCTTTTTAACGA+AGG + chr3.3:23785741-23785760 None:intergenic 40.0%
AAAAACATGCCTCCTGGTTG+AGG + chr3.3:23786005-23786024 None:intergenic 45.0%
AATGGACCCTCTTCAAAGCT+AGG + chr3.3:23787411-23787430 None:intergenic 45.0%
ACTGAGATACACCTCATTCG+AGG - chr3.3:23785664-23785683 MS.gene46636:intron 45.0%
ACTGGAAAAAACATGCCTCC+TGG + chr3.3:23786011-23786030 None:intergenic 45.0%
AGAGACTCAACAATCCAACC+AGG + chr3.3:23787501-23787520 None:intergenic 45.0%
ATAGGCATGGTATGTGCATC+AGG + chr3.3:23786659-23786678 None:intergenic 45.0%
ATCATTAGCGGTGACATGTC+AGG + chr3.3:23787184-23787203 None:intergenic 45.0%
CCCTTCCCTTCGGATTTAAA+TGG + chr3.3:23787741-23787760 None:intergenic 45.0%
CTTCAGCCTAGAATACCAGA+AGG - chr3.3:23784805-23784824 MS.gene46636:CDS 45.0%
GCAACCTCGATTGAGGATAA+TGG - chr3.3:23785751-23785770 MS.gene46636:intron 45.0%
GCCTTTCATGTACCTTAGCT+TGG - chr3.3:23784985-23785004 MS.gene46636:CDS 45.0%
GTAGGATCTTCTTGAACACC+AGG + chr3.3:23786287-23786306 None:intergenic 45.0%
TAGGCATGGTATGTGCATCA+GGG + chr3.3:23786658-23786677 None:intergenic 45.0%
TCAAACACGACACCAACACA+TGG + chr3.3:23787234-23787253 None:intergenic 45.0%
TCAACAATCCAACCAGGAAG+TGG + chr3.3:23787495-23787514 None:intergenic 45.0%
TCAAGAAGTGGACCACAAGT+AGG + chr3.3:23786305-23786324 None:intergenic 45.0%
TCAGTCGGAGATGCGAAAAA+TGG - chr3.3:23787660-23787679 MS.gene46636:intron 45.0%
TCTAGGCTGAAGAGAAGCAA+AGG + chr3.3:23784797-23784816 None:intergenic 45.0%
TTGGTAGAGTATGTGACTGG+TGG - chr3.3:23785978-23785997 MS.gene46636:intron 45.0%
TTGTGGTCCTGTTCTTGATC+AGG - chr3.3:23787866-23787885 MS.gene46636:CDS 45.0%
! ATCCTAGAAGTGAAGGGCAT+AGG + chr3.3:23786677-23786696 None:intergenic 45.0%
! CATATGTGTCGGTGTCTTGT+TGG - chr3.3:23785623-23785642 MS.gene46636:intron 45.0%
! GGTTTGGTAGAGTATGTGAC+TGG - chr3.3:23785975-23785994 MS.gene46636:intron 45.0%
! TGAGAGTGTACTTCTCCTCA+AGG + chr3.3:23785113-23785132 None:intergenic 45.0%
!! GAGGAGTATCTCTGCTTTGT+AGG - chr3.3:23785683-23785702 MS.gene46636:intron 45.0%
!! TACCTCTTGTAGGCATTGGA+GGG + chr3.3:23786352-23786371 None:intergenic 45.0%
!! TTACCTCTTGTAGGCATTGG+AGG + chr3.3:23786353-23786372 None:intergenic 45.0%
!! AAATTTAATAATAATGAATT+TGG - chr3.3:23785311-23785330 MS.gene46636:intron 5.0%
!! CATAAAAAAAAAAAAAAAAA+AGG + chr3.3:23785342-23785361 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTATG+AGG - chr3.3:23785342-23785361 MS.gene46636:intron 5.0%
ATCTCTGTGCCTCCACAAAC+TGG - chr3.3:23786164-23786183 MS.gene46636:intron 50.0%
CAACTGCTCCAAGTCCGAAT+GGG + chr3.3:23787563-23787582 None:intergenic 50.0%
CAAGTGTGTGTCCGGTATCA+TGG + chr3.3:23786568-23786587 None:intergenic 50.0%
CATGATACCGGACACACACT+TGG - chr3.3:23786566-23786585 MS.gene46636:CDS 50.0%
CTCATGGAACACATGCTGTG+AGG - chr3.3:23786033-23786052 MS.gene46636:intron 50.0%
GATCTCTACTCACCACTTCC+TGG - chr3.3:23787480-23787499 MS.gene46636:intron 50.0%
GCAGAGATACTCCTCGAATG+AGG + chr3.3:23785678-23785697 None:intergenic 50.0%
GCATGTGTTCCATGAGTCAC+TGG + chr3.3:23786029-23786048 None:intergenic 50.0%
GGAACATCACCAGTTTGTGG+AGG + chr3.3:23786176-23786195 None:intergenic 50.0%
GGTGTATCTCAGTGTCAGAC+AGG + chr3.3:23785657-23785676 None:intergenic 50.0%
TACCCTCCAATGCCTACAAG+AGG - chr3.3:23786347-23786366 MS.gene46636:CDS 50.0%
TCAACTGCTCCAAGTCCGAA+TGG + chr3.3:23787564-23787583 None:intergenic 50.0%
TCTACTCACCACTTCCTGGT+TGG - chr3.3:23787484-23787503 MS.gene46636:intron 50.0%
TGCCTATGCCCTTCACTTCT+AGG - chr3.3:23786672-23786691 MS.gene46636:CDS 50.0%
TGTCCAACCCACCATGATAC+CGG - chr3.3:23786554-23786573 MS.gene46636:CDS 50.0%
TGTGTGTCCGGTATCATGGT+GGG + chr3.3:23786564-23786583 None:intergenic 50.0%
TTCAACGTCCCATTCGGACT+TGG - chr3.3:23787552-23787571 MS.gene46636:intron 50.0%
! ACTTTCTGGTGTACCGGAAC+AGG - chr3.3:23785805-23785824 MS.gene46636:intron 50.0%
! AGAAGTGAAGGGCATAGGCA+TGG + chr3.3:23786672-23786691 None:intergenic 50.0%
GGAACACATGCTGTGAGGCT+AGG - chr3.3:23786038-23786057 MS.gene46636:intron 55.0%
GTGTGTGTCCGGTATCATGG+TGG + chr3.3:23786565-23786584 None:intergenic 55.0%
TCAGGTTATAGTGTCCCCCG+TGG - chr3.3:23787884-23787903 MS.gene46636:CDS 55.0%
TGGTGGGAGTAAAACGCCGT+TGG + chr3.3:23787451-23787470 None:intergenic 55.0%
!! GGAGCAGTTGAGCTTGTTGC+TGG - chr3.3:23787573-23787592 MS.gene46636:intron 55.0%
!! TGTCCGGTATCATGGTGGGT+TGG + chr3.3:23786560-23786579 None:intergenic 55.0%
ACTGGTGGTCCTCAACCAGG+AGG - chr3.3:23785993-23786012 MS.gene46636:intron 60.0%
GTGACTGGTGGTCCTCAACC+AGG - chr3.3:23785990-23786009 MS.gene46636:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 23784739 23787911 23784739 ID=MS.gene46636
chr3.3 mRNA 23784739 23787911 23784739 ID=MS.gene46636.t1;Parent=MS.gene46636
chr3.3 exon 23787824 23787911 23787824 ID=MS.gene46636.t1.exon1;Parent=MS.gene46636.t1
chr3.3 CDS 23787824 23787911 23787824 ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1
chr3.3 exon 23786282 23786776 23786282 ID=MS.gene46636.t1.exon2;Parent=MS.gene46636.t1
chr3.3 CDS 23786282 23786776 23786282 ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1
chr3.3 exon 23784739 23785259 23784739 ID=MS.gene46636.t1.exon3;Parent=MS.gene46636.t1
chr3.3 CDS 23784739 23785259 23784739 ID=cds.MS.gene46636.t1;Parent=MS.gene46636.t1
Gene Sequence

>MS.gene46636

ATGGCGGTGTCTCTCTTTTCTTCAATCTCTCTAGCTTTCTTCTTTGCTTCTTCAGCCTTTGCTTCTCTTCAGCCTAGAATACCAGAAGGTGATACTCACATCTAAAACCATTTCATTTATTTATTATATCTATATAGCAATAACAATGTTACATTTTGTACTTTCATATGTTCCATTGTTGGATACATTTTTCTCATTCTTGTAACATGTAAGAGAAATAGTTATGCTTCATACATTTTTCTTTTTGCCTTTCATGTACCTTAGCTTGGAGAATTTTTATTTTTATTTTAAAGAAAAAAGTTTTTTTTTTCCTTGTGAAGAAGCTAAATTAACTCACCTAAGTTGAAACTTTGAGAGAATTGAATCTGAAACCTTGAGGAGAAGTACACTCTCAGTTCTCAAGCCAATGTGACATATTAAGTCCTATTTTTCACTATACTTTGATCTAGTTGTTAGGGTCACTTTATGGGTTCATTAAAAAATTGTGGTTGGCTTTAAGATCTGTCATTTATGGTGAAGTTTTGAGTGGGTAAGTAGGATTGATACTGTGCTTGGATCTGATTATTATTAACAAATTTAATAATAATGAATTTGGTGGTACCTTTTTTTTTTTTTTTTTTATGAGGTCTCAGCTCAAAGCTAAGAGTCTAATTTGTAAACTCAATGAACAAAGTTCCAATTTATCCGACATAGTTGTAAAATGGTCATTAATGTTATTTTAATCAGTAAAATTTTCCTATTTGGGACCTCAAATGCTTTGCACTCTTTGTTAAGGTATTGTTTGTTTTTGTCTATGAAGCACAAACTCAAACACAGACACCAAACACAACACGAAAATGTCGAGACTAATAATAATTTGAGAGAACGACATAATTCTATGTAATCATATGTGTCGGTGTCTTGTTGGACACGATACCTGTCTGACACTGAGATACACCTCATTCGAGGAGTATCTCTGCTTTGTAGGTTTTTGGTCATGTTAAGTCTTTACGCCTTTTTCCTTCGTTAAAAAGCAACCTCGATTGAGGATAATGGATGATTATAAACTACTTAGCCTCAATATGAGACTTTCTGGTGTACCGGAACAGGATCTAAAGTTGTTTGGTGTGTAATTTATTTTTTCTTATCTTTGCAGTTTATCTTCAAAATGGAAACTTTGAGGAGAAGCCAAACCCTAAAGACCTAAAGAATACCAAGCTCATTGGAAAATTTTCCCTACCAAAGTGGGAAATCAATGGTTTGGTAGAGTATGTGACTGGTGGTCCTCAACCAGGAGGCATGTTTTTTCCAGTGACTCATGGAACACATGCTGTGAGGCTAGGAAATGAAGCTTCAATTTCTCAAACAATTAAGGTCAAACCTGGTCAACTCTATGCTTTAATTCTTGGTGCATCAAGGACTTGTGCACAAGATGAAGTTTTGAGAATCTCTGTGCCTCCACAAACTGGTGATGTTCCTTTGCAAACATTGTATAGTCTCAATGGTGATGTTATTGCTTGGGGATTTAAAGCTACATCTAATGTTGCTAAAGTGACTTTTCATAACCCTGGTGTTCAAGAAGATCCTACTTGTGGTCCACTTCTTGATGCAATTGCTATCAGAGAGTTTTACCCTCCAATGCCTACAAGAGGTAATGAAACATATCCACATCTGTATTGTTAAATACTGTCTATAGCGTAGCAAACTTTGAACAATTTTCTATTATTCTCCAATACGCTGTTTAGTGCTTGTTTGATATCATGGTGAGTTTGACACCGTGATTTTGCAAAATCTATGCTTTGTAGCTTCAACAAAATCATGGTGGTGCCGTAATTTTGTCCAACCCACCATGATACCGGACACACACTTGGTACAAAATGATGTCAAATAGTAACTATAGCGGCGTTATAGCACTGTTTCGTAACAAAATTTGACAACCCTGATGCACATACCATGCCTATGCCCTTCACTTCTAGGATTCTACATAATTGAACTTAACAGGCACTTGATAAGAACTTGTTGAGATTAAGAATGTGAAAAATCTTATACTAACTGATAGATCTATCAGTTCTCCACTACTTAGGTGTGTTATGTGGATCTTGCTTATATTAATGAATTTTCAGATGAAGATTGTTTCCATGTTCTTTGATCTATCATATTTCCGATGTGTCCTAAAAATCAATCGTTATTTATTTGAAAATGTTTTCTACGGAGTTTCTTTGTTATGGAACCAAAAAATTAATTGAAAAGGGCAACATTTAATGCATTAATAACAAAGTATGTATTCGGGTGGCATATCGACTTCAAATATTTATTTGGTCCCTCAAATGTATGTTTTTTTGCAACTACAAACCAAACACACTTTCATCTTTGAACAATTAACTCTATTTAGTTCCTTTGAAGGATATTGGATCCTTACCTATGAAACATGGACACATACACAAATATTAGCACAATAATGATCCTGACATGTCACCGCTAATGATTTGAGAGACTGAAATGATTGAATGGAACCATGTGTTGGTGTCGTGTTTGATGAACATGTCTTTAGCCTGAAGTGTTAGTGCTACAAAATATGATCTTTCTGATTTTTCTTAGCATTTTTTTTGGTGTTTAGTGTATTTGAAACTCTCATTTTCTGATAAAGCTGTTAATGATTATGGTCTATTGCAGTTAATTTGGTGAAAAATCCTAGCTTTGAAGAGGGTCCATTCCCAATTTTCAACTCAACCAACGGCGTTTTACTCCCACCACAACAAGAAGATCTCTACTCACCACTTCCTGGTTGGATTGTTGAGTCTCTCAAAGCCGTGAAATTTATCGACTCAAAGCATTTCAACGTCCCATTCGGACTTGGAGCAGTTGAGCTTGTTGCTGGCAGAGAAAGCGCCATTGCACAAATTCTGAGAACAGAAGCTAACAAAGTCTACAAAATCACATTCTCAGTCGGAGATGCGAAAAATGGTTGTCATGGATCAATGATGGTTGAAGCTTTTGCTGCAAAAGATACTTTTAAAGTTCCATTTAAATCCGAAGGGAAGGGTAAATTCATAACTGTGAGTTTCAAGTTTAAAGCTATTGCACCAAGGACTAGACTCACATTCTACAGCTCTTTCTATCATACAAGAATCGATGATTATGGCTCTCTTTGTGGTCCTGTTCTTGATCAGGTTATAGTGTCCCCCGTGGCTTAA

Protein sequence

>MS.gene46636.t1

MAVSLFSSISLAFFFASSAFASLQPRIPEVYLQNGNFEEKPNPKDLKNTKLIGKFSLPKWEINGLVEYVTGGPQPGGMFFPVTHGTHAVRLGNEASISQTIKVKPGQLYALILGASRTCAQDEVLRISVPPQTGDVPLQTLYSLNGDVIAWGFKATSNVAKVTFHNPGVQEDPTCGPLLDAIAIREFYPPMPTRVNLVKNPSFEEGPFPIFNSTNGVLLPPQQEDLYSPLPGWIVESLKAVKFIDSKHFNVPFGLGAVELVAGRESAIAQILRTEANKVYKITFSVGDAKNGCHGSMMVEAFAAKDTFKVPFKSEGKGKFITVSFKFKAIAPRTRLTFYSSFYHTRIDDYGSLCGPVLDQVIVSPVA