Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48183.t1 | RHN50986.1 | 97.6 | 41 | 1 | 0 | 1 | 41 | 1 | 41 | 3.10E-10 | 75.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48183.t1 | A0A072U8W7 | 97.6 | 41 | 1 | 0 | 1 | 41 | 1 | 41 | 2.2e-10 | 75.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049265 | MS.gene48183 | 0.80873 | 2.68E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene48183 | 0.812119 | 4.98E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene48183 | 0.811865 | 5.65E-51 | -1.69E-46 |
| MS.gene050380 | MS.gene48183 | 0.838279 | 3.16E-57 | -1.69E-46 |
| MS.gene050381 | MS.gene48183 | 0.820026 | 8.52E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene48183 | 0.888591 | 5.16E-73 | -1.69E-46 |
| MS.gene05104 | MS.gene48183 | 0.826035 | 3.38E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene48183 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene051632 | MS.gene48183 | 0.834386 | 3.09E-56 | -1.69E-46 |
| MS.gene051907 | MS.gene48183 | 0.804297 | 2.31E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene48183 | 0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene052805 | MS.gene48183 | 0.813124 | 3.00E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene48183 | 0.807476 | 4.96E-50 | -1.69E-46 |
| MS.gene054290 | MS.gene48183 | 0.895031 | 1.41E-75 | -1.69E-46 |
| MS.gene054706 | MS.gene48183 | 0.80903 | 2.31E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene48183 | 0.806741 | 7.10E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene48183 | 0.820919 | 5.32E-53 | -1.69E-46 |
| MS.gene055959 | MS.gene48183 | 0.836823 | 7.47E-57 | -1.69E-46 |
| MS.gene056330 | MS.gene48183 | 0.801174 | 1.02E-48 | -1.69E-46 |
| MS.gene056856 | MS.gene48183 | 0.833287 | 5.82E-56 | -1.69E-46 |
| MS.gene057544 | MS.gene48183 | 0.834773 | 2.47E-56 | -1.69E-46 |
| MS.gene058067 | MS.gene48183 | 0.809702 | 1.66E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene48183 | 0.801258 | 9.80E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene48183 | 0.858105 | 1.04E-62 | -1.69E-46 |
| MS.gene058099 | MS.gene48183 | 0.838122 | 3.47E-57 | -1.69E-46 |
| MS.gene058158 | MS.gene48183 | 0.82962 | 4.65E-55 | -1.69E-46 |
| MS.gene058171 | MS.gene48183 | 0.800895 | 1.16E-48 | -1.69E-46 |
| MS.gene058175 | MS.gene48183 | 0.804848 | 1.77E-49 | -1.69E-46 |
| MS.gene058176 | MS.gene48183 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene058179 | MS.gene48183 | 0.838574 | 2.65E-57 | -1.69E-46 |
| MS.gene058180 | MS.gene48183 | 0.809964 | 1.46E-50 | -1.69E-46 |
| MS.gene058840 | MS.gene48183 | 0.830818 | 2.37E-55 | -1.69E-46 |
| MS.gene059037 | MS.gene48183 | 0.830721 | 2.50E-55 | -1.69E-46 |
| MS.gene059038 | MS.gene48183 | 0.822002 | 2.99E-53 | -1.69E-46 |
| MS.gene059682 | MS.gene48183 | 0.812231 | 4.71E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene48183 | 0.820495 | 6.65E-53 | -1.69E-46 |
| MS.gene060405 | MS.gene48183 | 0.800499 | 1.40E-48 | -1.69E-46 |
| MS.gene060578 | MS.gene48183 | 0.816924 | 4.30E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48183.t1 | MTR_6g034870 | 49.819 | 277 | 14 | 7 | 1 | 170 | 1 | 259 | 3.28e-24 | 101 |
| MS.gene48183.t1 | MTR_6g034905 | 98.387 | 62 | 1 | 0 | 1 | 62 | 1 | 62 | 8.31e-17 | 75.5 |
| MS.gene48183.t1 | MTR_1g033130 | 54.667 | 225 | 34 | 14 | 42 | 221 | 611 | 812 | 4.94e-14 | 72.0 |
| MS.gene48183.t1 | MTR_1g033130 | 52.321 | 237 | 41 | 14 | 54 | 238 | 596 | 812 | 9.71e-12 | 65.1 |
| MS.gene48183.t1 | MTR_1g094130 | 43.060 | 281 | 84 | 7 | 1 | 240 | 27 | 272 | 1.94e-13 | 68.9 |
| MS.gene48183.t1 | MTR_6g034920 | 58.042 | 143 | 20 | 3 | 1 | 103 | 1 | 143 | 6.25e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 131 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAATTGTTTGCTGAAATT+TGG | 0.094511 | 6.4:-7301285 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.293720 | 6.4:-7301814 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.322204 | 6.4:-7301610 | None:intergenic |
| GCGTATTTGTATGGCTTAGA+TGG | 0.355782 | 6.4:-7301328 | None:intergenic |
| GGTGACTTGTAATTGTAAAC+TGG | 0.358196 | 6.4:-7301844 | None:intergenic |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.364452 | 6.4:-7301613 | None:intergenic |
| GGAGACTTGTACTTGTAAAC+TGG | 0.368192 | 6.4:-7301640 | None:intergenic |
| GGAGGTGAGTAGACGGGTGG+AGG | 0.373273 | 6.4:-7301817 | None:intergenic |
| GGTGAATAGACGGGTGGAGG+AGG | 0.375393 | 6.4:-7301763 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+AGG | 0.379141 | 6.4:-7301559 | None:intergenic |
| GGTGAGTACACTGGTGGAGG+TGG | 0.386356 | 6.4:-7301508 | None:intergenic |
| GTAATTGTTTGCTGAAATTT+GGG | 0.386463 | 6.4:-7301284 | None:intergenic |
| GGTGACTTATATTTATAAAC+AGG | 0.391402 | 6.4:-7301415 | None:intergenic |
| TAAGAGTAATGGAGGCCATT+TGG | 0.393938 | 6.4:-7301225 | None:intergenic |
| GGTGGTGAGTAGACAGGTGG+GGG | 0.401670 | 6.4:-7301388 | None:intergenic |
| GGGGACTTGTATTTGTAAAC+TGG | 0.418805 | 6.4:-7301793 | None:intergenic |
| TACTTGTAAACTGGTGGTGG+TGG | 0.421070 | 6.4:-7301355 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.428477 | 6.4:-7301661 | None:intergenic |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.432340 | 6.4:-7301562 | None:intergenic |
| GGTGAGTAAGTAGGAGGAGG+AGG | 0.439172 | 6.4:-7301916 | None:intergenic |
| GGAGGTGGTGAGTAGACAGG+TGG | 0.439184 | 6.4:-7301391 | None:intergenic |
| GGTGGGGAAGCGTATTTGTA+TGG | 0.439487 | 6.4:-7301337 | None:intergenic |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.441074 | 6.4:-7301664 | None:intergenic |
| GGAGACTTATACTTGTAAAC+TGG | 0.445660 | 6.4:-7301895 | None:intergenic |
| GGTGATTTATACTTGTAAAC+TGG | 0.448161 | 6.4:-7301364 | None:intergenic |
| GGAGGAGGTGAGTAGACGGG+TGG | 0.451688 | 6.4:-7301820 | None:intergenic |
| GGTGAGTAGACCGGTGGAGG+AGG | 0.452395 | 6.4:-7301712 | None:intergenic |
| GGAAAATATGAGGTTCCAAA+TGG | 0.456109 | 6.4:+7301210 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+TGG | 0.458453 | 6.4:-7301691 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+TGG | 0.460087 | 6.4:-7301487 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+TGG | 0.460087 | 6.4:-7301589 | None:intergenic |
| GGTGAATAGACGGGAGGAGG+TGG | 0.460193 | 6.4:-7301865 | None:intergenic |
| GGTGGTGAGTAGACTGGTGG+AGG | 0.460575 | 6.4:-7301439 | None:intergenic |
| GTGAGTACACTGGTGGAGGT+GGG | 0.460710 | 6.4:-7301507 | None:intergenic |
| GGAGGTGGTGAGTAGACGGG+TGG | 0.465265 | 6.4:-7301616 | None:intergenic |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.465366 | 6.4:-7301609 | None:intergenic |
| GGAGACTTGTACTTGTAAAC+TGG | 0.473880 | 6.4:-7301538 | None:intergenic |
| GGTGGTGAGTAGACAGGTGG+AGG | 0.483587 | 6.4:-7301460 | None:intergenic |
| TACTTGTAAACTGGTGGTGG+TGG | 0.483654 | 6.4:-7301529 | None:intergenic |
| TACTTGTAAACTGGTGGTGG+TGG | 0.483654 | 6.4:-7301682 | None:intergenic |
| GGTGGTGAATAGACGGGAGG+AGG | 0.487137 | 6.4:-7301868 | None:intergenic |
| TTGCTGAAATTTGGGATGGC+AGG | 0.492467 | 6.4:-7301276 | None:intergenic |
| GAGGTGGTGAGTAGACAGGT+GGG | 0.495523 | 6.4:-7301390 | None:intergenic |
| GGTGGTGAATAGACGGGTGG+AGG | 0.496102 | 6.4:-7301766 | None:intergenic |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.500985 | 6.4:-7301813 | None:intergenic |
| GGTGGTGAGTAGACCGGTGG+AGG | 0.502525 | 6.4:-7301715 | None:intergenic |
| TGAGTACACTGGTGGAGGTG+GGG | 0.503087 | 6.4:-7301506 | None:intergenic |
| GGTGGTGAGTACACTGGTGG+AGG | 0.506192 | 6.4:-7301511 | None:intergenic |
| GGTGAGTAGACAGGTGGAGG+TGG | 0.506411 | 6.4:-7301457 | None:intergenic |
| TATGGCTTAGATGGTGGTGG+TGG | 0.508770 | 6.4:-7301319 | None:intergenic |
| GGTGAGTAGACTGGTGGAGG+TGG | 0.509653 | 6.4:-7301436 | None:intergenic |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.510657 | 6.4:-7301812 | None:intergenic |
| TATTTATAAACAGGTGGAGG+TGG | 0.516161 | 6.4:-7301406 | None:intergenic |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.516214 | 6.4:-7301608 | None:intergenic |
| TACTTGTAAACTGGTGGAGG+TGG | 0.518842 | 6.4:-7301478 | None:intergenic |
| TACTTGTAAACTGGTGGAGG+TGG | 0.518842 | 6.4:-7301580 | None:intergenic |
| TGAATAGACGGGTGGAGGAG+GGG | 0.520499 | 6.4:-7301761 | None:intergenic |
| TAGATATAATGTGGTGGAGG+TGG | 0.521642 | 6.4:-7301937 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+CGG | 0.524408 | 6.4:-7301742 | None:intergenic |
| GTGAGTAGACCGGTGGAGGA+GGG | 0.525831 | 6.4:-7301711 | None:intergenic |
| TGAGTAGACCGGTGGAGGAG+GGG | 0.526670 | 6.4:-7301710 | None:intergenic |
| GGTGGTGGTGGTGAGTAGAC+GGG | 0.529501 | 6.4:-7301670 | None:intergenic |
| GGTGGTGAGTAAGTAGGAGG+AGG | 0.529938 | 6.4:-7301919 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+GGG | 0.530290 | 6.4:-7301568 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+TGG | 0.532190 | 6.4:-7301685 | None:intergenic |
| TTGTATGGCTTAGATGGTGG+TGG | 0.534713 | 6.4:-7301322 | None:intergenic |
| GGTGGAGGTGGTGAGTAAGT+AGG | 0.536815 | 6.4:-7301925 | None:intergenic |
| TAGTAGTGGTAAGGAGGAGG+TGG | 0.537644 | 6.4:-7301967 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+AGG | 0.541551 | 6.4:-7301394 | None:intergenic |
| TACTTGTAAACCGGTGGAGG+TGG | 0.542895 | 6.4:-7301733 | None:intergenic |
| TGGTGAAGGTGGTGAATAGA+CGG | 0.542965 | 6.4:-7301875 | None:intergenic |
| GTGACTTGTAATTGTAAACT+GGG | 0.543533 | 6.4:-7301843 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+TGG | 0.544213 | 6.4:-7301445 | None:intergenic |
| TGGTGGTGGTGGTGAGTAGA+CGG | 0.545412 | 6.4:-7301671 | None:intergenic |
| GTGAATAGACGGGTGGAGGA+GGG | 0.548741 | 6.4:-7301762 | None:intergenic |
| CAATGCAATAGTAAGAGTAA+TGG | 0.551028 | 6.4:-7301236 | None:intergenic |
| GACTTGTATTTGTAAACTGG+TGG | 0.551063 | 6.4:-7301790 | None:intergenic |
| GTACAAGTCCCCTCCTCCAC+CGG | 0.552768 | 6.4:+7301702 | MS.gene48183:CDS |
| ACCACCATTTAGTAGTGGTA+AGG | 0.552807 | 6.4:-7301976 | None:intergenic |
| TATTTGTAAACTGGTGGAGG+TGG | 0.555899 | 6.4:-7301784 | None:intergenic |
| GGAGGTGGTGAGTAAGTAGG+AGG | 0.556059 | 6.4:-7301922 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+AGG | 0.556465 | 6.4:-7301466 | None:intergenic |
| TGGTGGAGGTGGTGAGTAGA+CGG | 0.560893 | 6.4:-7301569 | None:intergenic |
| TGGTGGAGGTGGTGAATAGA+CGG | 0.563999 | 6.4:-7301773 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+CGG | 0.564287 | 6.4:-7301721 | None:intergenic |
| GAGACTTGTACTTGTAAACT+GGG | 0.565827 | 6.4:-7301639 | None:intergenic |
| CTTGTAAACTGGTGGTGGTG+GGG | 0.574955 | 6.4:-7301353 | None:intergenic |
| TTGTATTTGTAAACTGGTGG+AGG | 0.576012 | 6.4:-7301787 | None:intergenic |
| TTATACTTGTAAACTGGTGG+TGG | 0.577426 | 6.4:-7301358 | None:intergenic |
| GGTCTACTCACCACCTCCAC+CGG | 0.577697 | 6.4:+7301723 | MS.gene48183:CDS |
| TTGTACTTGTAAACCGGTGG+AGG | 0.578530 | 6.4:-7301736 | None:intergenic |
| TTATATTTATAAACAGGTGG+AGG | 0.579141 | 6.4:-7301409 | None:intergenic |
| GGTGGAGGTGGTGAATAGAC+GGG | 0.581891 | 6.4:-7301772 | None:intergenic |
| CTTAGATGGTGGTGGTGGAG+AGG | 0.582008 | 6.4:-7301314 | None:intergenic |
| GACTTATATTTATAAACAGG+TGG | 0.583330 | 6.4:-7301412 | None:intergenic |
| GGAGGTGGTGAGTAGACAGG+TGG | 0.584342 | 6.4:-7301463 | None:intergenic |
| GGTGGTGGTGAGTAGACGGG+TGG | 0.586082 | 6.4:-7301667 | None:intergenic |
| TGCAATAGTAAGAGTAATGG+AGG | 0.586366 | 6.4:-7301233 | None:intergenic |
| ACTTGTAAACTGGTGGTGGT+GGG | 0.589086 | 6.4:-7301354 | None:intergenic |
| GAGTAGATATAATGTGGTGG+AGG | 0.594587 | 6.4:-7301940 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+AGG | 0.598373 | 6.4:-7301481 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+AGG | 0.598373 | 6.4:-7301583 | None:intergenic |
| GGTGAAGGTGGTGAATAGAC+GGG | 0.600944 | 6.4:-7301874 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.601010 | 6.4:-7301484 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.601010 | 6.4:-7301586 | None:intergenic |
| GGTGGTGGTGGTGAGTACAC+TGG | 0.601096 | 6.4:-7301517 | None:intergenic |
| ATTTAGTAGTGGTAAGGAGG+AGG | 0.602889 | 6.4:-7301970 | None:intergenic |
| GGAGGTGGTGAGTAGACGGG+TGG | 0.603335 | 6.4:-7301565 | None:intergenic |
| GGAGGTGGTGAGTAGACTGG+TGG | 0.605274 | 6.4:-7301442 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+TGG | 0.606726 | 6.4:-7301532 | None:intergenic |
| TTATACTTGTAAACTGGTGA+AGG | 0.609114 | 6.4:-7301889 | None:intergenic |
| AGGTGGTGAGTAGACAGGTG+GGG | 0.609414 | 6.4:-7301389 | None:intergenic |
| ACCATTTAGTAGTGGTAAGG+AGG | 0.618262 | 6.4:-7301973 | None:intergenic |
| GACTTGTACTTGTAAACCGG+TGG | 0.621403 | 6.4:-7301739 | None:intergenic |
| GGAGGTGGTGAGTAGACCGG+TGG | 0.622633 | 6.4:-7301718 | None:intergenic |
| CATAAACCACCATTTAGTAG+TGG | 0.625993 | 6.4:-7301981 | None:intergenic |
| GGTGAAGAGTAGATATAATG+TGG | 0.631465 | 6.4:-7301946 | None:intergenic |
| TACTTGTAAACTGGTGAAGG+TGG | 0.631522 | 6.4:-7301886 | None:intergenic |
| TTGTTTGCTGAAATTTGGGA+TGG | 0.632942 | 6.4:-7301280 | None:intergenic |
| GGTGGTGGTGAGTACACTGG+TGG | 0.636351 | 6.4:-7301514 | None:intergenic |
| GGAGGTGGTGAATAGACGGG+TGG | 0.644341 | 6.4:-7301769 | None:intergenic |
| GATTTATACTTGTAAACTGG+TGG | 0.644397 | 6.4:-7301361 | None:intergenic |
| GAAGAGTAGATATAATGTGG+TGG | 0.646587 | 6.4:-7301943 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.657109 | 6.4:-7301688 | None:intergenic |
| GACTTGTACTTGTAAACTGG+GGG | 0.662032 | 6.4:-7301637 | None:intergenic |
| GAAGGTGGTGAATAGACGGG+AGG | 0.663340 | 6.4:-7301871 | None:intergenic |
| GACTTGTAATTGTAAACTGG+GGG | 0.685386 | 6.4:-7301841 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.690910 | 6.4:-7301535 | None:intergenic |
| TATTTGTATGGCTTAGATGG+TGG | 0.691843 | 6.4:-7301325 | None:intergenic |
| AGACTTGTACTTGTAAACTG+GGG | 0.710365 | 6.4:-7301638 | None:intergenic |
| TGACTTGTAATTGTAAACTG+GGG | 0.754896 | 6.4:-7301842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GACTTATATTTATAAACAGG+TGG | - | chr6.4:7301415-7301434 | None:intergenic | 25.0% |
| ! | GGTGACTTATATTTATAAAC+AGG | - | chr6.4:7301418-7301437 | None:intergenic | 25.0% |
| ! | TTATATTTATAAACAGGTGG+AGG | - | chr6.4:7301412-7301431 | None:intergenic | 25.0% |
| !! | GTAATTGTTTGCTGAAATTT+GGG | - | chr6.4:7301287-7301306 | None:intergenic | 25.0% |
| CAATGCAATAGTAAGAGTAA+TGG | - | chr6.4:7301239-7301258 | None:intergenic | 30.0% | |
| GATTTATACTTGTAAACTGG+TGG | - | chr6.4:7301364-7301383 | None:intergenic | 30.0% | |
| GGTGATTTATACTTGTAAAC+TGG | - | chr6.4:7301367-7301386 | None:intergenic | 30.0% | |
| TTATACTTGTAAACTGGTGA+AGG | - | chr6.4:7301892-7301911 | None:intergenic | 30.0% | |
| ! | CGTAATTGTTTGCTGAAATT+TGG | - | chr6.4:7301288-7301307 | None:intergenic | 30.0% |
| ! | GTGACTTGTAATTGTAAACT+GGG | - | chr6.4:7301846-7301865 | None:intergenic | 30.0% |
| ! | TGACTTGTAATTGTAAACTG+GGG | - | chr6.4:7301845-7301864 | None:intergenic | 30.0% |
| AGACTTGTACTTGTAAACTG+GGG | - | chr6.4:7301539-7301558 | None:intergenic | 35.0% | |
| GAAGAGTAGATATAATGTGG+TGG | - | chr6.4:7301946-7301965 | None:intergenic | 35.0% | |
| GACTTGTAATTGTAAACTGG+GGG | - | chr6.4:7301844-7301863 | None:intergenic | 35.0% | |
| GACTTGTATTTGTAAACTGG+TGG | - | chr6.4:7301793-7301812 | None:intergenic | 35.0% | |
| GAGACTTGTACTTGTAAACT+GGG | - | chr6.4:7301540-7301559 | None:intergenic | 35.0% | |
| GGAGACTTATACTTGTAAAC+TGG | - | chr6.4:7301898-7301917 | None:intergenic | 35.0% | |
| GGTGAAGAGTAGATATAATG+TGG | - | chr6.4:7301949-7301968 | None:intergenic | 35.0% | |
| TATTTATAAACAGGTGGAGG+TGG | - | chr6.4:7301409-7301428 | None:intergenic | 35.0% | |
| TATTTGTATGGCTTAGATGG+TGG | - | chr6.4:7301328-7301347 | None:intergenic | 35.0% | |
| TGCAATAGTAAGAGTAATGG+AGG | - | chr6.4:7301236-7301255 | None:intergenic | 35.0% | |
| TTATACTTGTAAACTGGTGG+TGG | - | chr6.4:7301361-7301380 | None:intergenic | 35.0% | |
| TTGTATTTGTAAACTGGTGG+AGG | - | chr6.4:7301790-7301809 | None:intergenic | 35.0% | |
| ! | GGTGACTTGTAATTGTAAAC+TGG | - | chr6.4:7301847-7301866 | None:intergenic | 35.0% |
| ! | TTGTTTGCTGAAATTTGGGA+TGG | - | chr6.4:7301283-7301302 | None:intergenic | 35.0% |
| GACTTGTACTTGTAAACTGG+GGG | - | chr6.4:7301487-7301506 | None:intergenic | 40.0% | |
| GACTTGTACTTGTAAACTGG+TGG | - | chr6.4:7301487-7301506 | None:intergenic | 40.0% | |
| GAGTAGATATAATGTGGTGG+AGG | - | chr6.4:7301943-7301962 | None:intergenic | 40.0% | |
| GCGTATTTGTATGGCTTAGA+TGG | - | chr6.4:7301331-7301350 | None:intergenic | 40.0% | |
| GGAGACTTGTACTTGTAAAC+TGG | - | chr6.4:7301541-7301560 | None:intergenic | 40.0% | |
| GGGGACTTGTATTTGTAAAC+TGG | - | chr6.4:7301796-7301815 | None:intergenic | 40.0% | |
| TACTTGTAAACTGGTGAAGG+TGG | - | chr6.4:7301889-7301908 | None:intergenic | 40.0% | |
| TATTTGTAAACTGGTGGAGG+TGG | - | chr6.4:7301787-7301806 | None:intergenic | 40.0% | |
| TTGTAATTGTAAACTGGGGG+AGG | - | chr6.4:7301841-7301860 | None:intergenic | 40.0% | |
| TTGTACTTGTAAACTGGTGG+AGG | - | chr6.4:7301484-7301503 | None:intergenic | 40.0% | |
| TTGTACTTGTAAACTGGTGG+TGG | - | chr6.4:7301484-7301503 | None:intergenic | 40.0% | |
| ! | TAAGAGTAATGGAGGCCATT+TGG | - | chr6.4:7301228-7301247 | None:intergenic | 40.0% |
| ! | TAGATATAATGTGGTGGAGG+TGG | - | chr6.4:7301940-7301959 | None:intergenic | 40.0% |
| GACTTGTACTTGTAAACCGG+TGG | - | chr6.4:7301742-7301761 | None:intergenic | 45.0% | |
| GGGGACTTGTACTTGTAAAC+CGG | - | chr6.4:7301490-7301509 | None:intergenic | 45.0% | |
| GGGGACTTGTACTTGTAAAC+TGG | - | chr6.4:7301490-7301509 | None:intergenic | 45.0% | |
| TAATTGTAAACTGGGGGAGG+AGG | - | chr6.4:7301838-7301857 | None:intergenic | 45.0% | |
| TACTTGTAAACTGGTGGAGG+TGG | - | chr6.4:7301481-7301500 | None:intergenic | 45.0% | |
| TGGTGAAGGTGGTGAATAGA+CGG | - | chr6.4:7301878-7301897 | None:intergenic | 45.0% | |
| TTGTACTTGTAAACCGGTGG+AGG | - | chr6.4:7301739-7301758 | None:intergenic | 45.0% | |
| TTGTACTTGTAAACTGGGGG+AGG | - | chr6.4:7301637-7301656 | None:intergenic | 45.0% | |
| ! | TTGCTGAAATTTGGGATGGC+AGG | - | chr6.4:7301279-7301298 | None:intergenic | 45.0% |
| ! | TTGTATGGCTTAGATGGTGG+TGG | - | chr6.4:7301325-7301344 | None:intergenic | 45.0% |
| !! | ACTTGTAAACTGGTGGTGGT+GGG | - | chr6.4:7301357-7301376 | None:intergenic | 45.0% |
| !! | TACTTGTAAACTGGTGGTGG+TGG | - | chr6.4:7301358-7301377 | None:intergenic | 45.0% |
| GGTGAAGGTGGTGAATAGAC+GGG | - | chr6.4:7301877-7301896 | None:intergenic | 50.0% | |
| TACTTGTAAACCGGTGGAGG+TGG | - | chr6.4:7301736-7301755 | None:intergenic | 50.0% | |
| TACTTGTAAACTGGGGGAGG+TGG | - | chr6.4:7301634-7301653 | None:intergenic | 50.0% | |
| TAGTAGTGGTAAGGAGGAGG+TGG | - | chr6.4:7301970-7301989 | None:intergenic | 50.0% | |
| TGGTGGAGGTGGTGAATAGA+CGG | - | chr6.4:7301776-7301795 | None:intergenic | 50.0% | |
| ! | GGTGGGGAAGCGTATTTGTA+TGG | - | chr6.4:7301340-7301359 | None:intergenic | 50.0% |
| !! | CTTGTAAACTGGTGGTGGTG+GGG | - | chr6.4:7301356-7301375 | None:intergenic | 50.0% |
| !! | TATGGCTTAGATGGTGGTGG+TGG | - | chr6.4:7301322-7301341 | None:intergenic | 50.0% |
| AGGTGGTGAGTAGACAGGTG+GGG | - | chr6.4:7301392-7301411 | None:intergenic | 55.0% | |
| GAAGGTGGTGAATAGACGGG+AGG | - | chr6.4:7301874-7301893 | None:intergenic | 55.0% | |
| GAGGTGGTGAGTAGACAGGT+GGG | - | chr6.4:7301393-7301412 | None:intergenic | 55.0% | |
| GGAGGTGGTGAGTAAGTAGG+AGG | - | chr6.4:7301925-7301944 | None:intergenic | 55.0% | |
| GGTGAGTAAGTAGGAGGAGG+AGG | - | chr6.4:7301919-7301938 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTGAATAGAC+GGG | - | chr6.4:7301775-7301794 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTGAGTAAGT+AGG | - | chr6.4:7301928-7301947 | None:intergenic | 55.0% | |
| GGTGGTGAGTAAGTAGGAGG+AGG | - | chr6.4:7301922-7301941 | None:intergenic | 55.0% | |
| GTGAATAGACGGGTGGAGGA+GGG | - | chr6.4:7301765-7301784 | None:intergenic | 55.0% | |
| GTGAGTACACTGGTGGAGGT+GGG | - | chr6.4:7301510-7301529 | None:intergenic | 55.0% | |
| TGAATAGACGGGTGGAGGAG+GGG | - | chr6.4:7301764-7301783 | None:intergenic | 55.0% | |
| TGAGTACACTGGTGGAGGTG+GGG | - | chr6.4:7301509-7301528 | None:intergenic | 55.0% | |
| TGGTGGAGGTGGTGAGTAGA+CGG | - | chr6.4:7301470-7301489 | None:intergenic | 55.0% | |
| !! | CTTAGATGGTGGTGGTGGAG+AGG | - | chr6.4:7301317-7301336 | None:intergenic | 55.0% |
| !! | TGGTGGTGGTGGTGAGTAGA+CGG | - | chr6.4:7301674-7301693 | None:intergenic | 55.0% |
| GGAGGTGGTGAATAGACGGG+TGG | - | chr6.4:7301772-7301791 | None:intergenic | 60.0% | |
| GGAGGTGGTGAGTAGACAGG+TGG | - | chr6.4:7301394-7301413 | None:intergenic | 60.0% | |
| GGAGGTGGTGAGTAGACTGG+TGG | - | chr6.4:7301445-7301464 | None:intergenic | 60.0% | |
| GGTCTACTCACCACCTCCAC+CGG | + | chr6.4:7301723-7301742 | MS.gene48183:CDS | 60.0% | |
| GGTGAATAGACGGGAGGAGG+TGG | - | chr6.4:7301868-7301887 | None:intergenic | 60.0% | |
| GGTGAATAGACGGGTGGAGG+AGG | - | chr6.4:7301766-7301785 | None:intergenic | 60.0% | |
| GGTGAGTACACTGGTGGAGG+TGG | - | chr6.4:7301511-7301530 | None:intergenic | 60.0% | |
| GGTGAGTAGACAGGTGGAGG+TGG | - | chr6.4:7301460-7301479 | None:intergenic | 60.0% | |
| GGTGAGTAGACTGGTGGAGG+TGG | - | chr6.4:7301439-7301458 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+AGG | - | chr6.4:7301397-7301416 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+CGG | - | chr6.4:7301397-7301416 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+GGG | - | chr6.4:7301397-7301416 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+TGG | - | chr6.4:7301397-7301416 | None:intergenic | 60.0% | |
| GGTGGTGAATAGACGGGAGG+AGG | - | chr6.4:7301871-7301890 | None:intergenic | 60.0% | |
| GGTGGTGAATAGACGGGTGG+AGG | - | chr6.4:7301769-7301788 | None:intergenic | 60.0% | |
| GGTGGTGAGTACACTGGTGG+AGG | - | chr6.4:7301514-7301533 | None:intergenic | 60.0% | |
| GGTGGTGAGTAGACAGGTGG+AGG | - | chr6.4:7301391-7301410 | None:intergenic | 60.0% | |
| GGTGGTGAGTAGACAGGTGG+GGG | - | chr6.4:7301391-7301410 | None:intergenic | 60.0% | |
| GGTGGTGAGTAGACTGGTGG+AGG | - | chr6.4:7301442-7301461 | None:intergenic | 60.0% | |
| GTACAAGTCCCCTCCTCCAC+CGG | + | chr6.4:7301702-7301721 | MS.gene48183:CDS | 60.0% | |
| GTGAGTAGACCGGTGGAGGA+GGG | - | chr6.4:7301714-7301733 | None:intergenic | 60.0% | |
| GTGAGTAGACGGGTGGAGGT+GGG | - | chr6.4:7301612-7301631 | None:intergenic | 60.0% | |
| TGAGTAGACCGGTGGAGGAG+GGG | - | chr6.4:7301713-7301732 | None:intergenic | 60.0% | |
| TGAGTAGACGGGTGGAGGTG+GGG | - | chr6.4:7301611-7301630 | None:intergenic | 60.0% | |
| TGGGGGAGGAGGTGAGTAGA+CGG | - | chr6.4:7301827-7301846 | None:intergenic | 60.0% | |
| TGGGGGAGGTGGTGAGTAGA+CGG | - | chr6.4:7301623-7301642 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTGAGTACACTGG+TGG | - | chr6.4:7301517-7301536 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGAGTACAC+TGG | - | chr6.4:7301520-7301539 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGAGTAGAC+GGG | - | chr6.4:7301673-7301692 | None:intergenic | 60.0% |
| GGAGGAGGTGAGTAGACGGG+TGG | - | chr6.4:7301823-7301842 | None:intergenic | 65.0% | |
| GGAGGTGAGTAGACGGGTGG+AGG | - | chr6.4:7301820-7301839 | None:intergenic | 65.0% | |
| GGAGGTGGTGAGTAGACCGG+TGG | - | chr6.4:7301721-7301740 | None:intergenic | 65.0% | |
| GGAGGTGGTGAGTAGACGGG+TGG | - | chr6.4:7301568-7301587 | None:intergenic | 65.0% | |
| GGGGGAGGAGGTGAGTAGAC+GGG | - | chr6.4:7301826-7301845 | None:intergenic | 65.0% | |
| GGGGGAGGTGGTGAGTAGAC+GGG | - | chr6.4:7301622-7301641 | None:intergenic | 65.0% | |
| GGTGAGTAGACAGGTGGGGG+TGG | - | chr6.4:7301388-7301407 | None:intergenic | 65.0% | |
| GGTGAGTAGACCGGTGGAGG+AGG | - | chr6.4:7301715-7301734 | None:intergenic | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+AGG | - | chr6.4:7301562-7301581 | None:intergenic | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+TGG | - | chr6.4:7301562-7301581 | None:intergenic | 65.0% | |
| GGTGGTGAGTAGACCGGTGG+AGG | - | chr6.4:7301718-7301737 | None:intergenic | 65.0% | |
| GGTGGTGAGTAGACGGGTGG+AGG | - | chr6.4:7301565-7301584 | None:intergenic | 65.0% | |
| ! | GGTGGTGGTGAGTAGACGGG+TGG | - | chr6.4:7301670-7301689 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 7301217 | 7301990 | 7301217 | ID=MS.gene48183 |
| chr6.4 | mRNA | 7301217 | 7301990 | 7301217 | ID=MS.gene48183.t1;Parent=MS.gene48183 |
| chr6.4 | exon | 7301217 | 7301990 | 7301217 | ID=MS.gene48183.t1.exon1;Parent=MS.gene48183.t1 |
| chr6.4 | CDS | 7301217 | 7301990 | 7301217 | ID=cds.MS.gene48183.t1;Parent=MS.gene48183.t1 |
| Gene Sequence |
| Protein sequence |
