Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49288.t1 | XP_013468491.1 | 99.4 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 1.80E-78 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49288.t1 | Q9SHY8 | 71.0 | 169 | 41 | 1 | 221 | 381 | 215 | 383 | 2.0e-62 | 241.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49288.t1 | I3SAI9 | 99.4 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 1.3e-78 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49288 | 0.824565 | 7.53E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene49288 | 0.809275 | 2.05E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene49288 | 0.840719 | 7.34E-58 | -1.69E-46 |
| MS.gene051102 | MS.gene49288 | 0.804818 | 1.80E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene49288 | 0.812559 | 3.99E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene49288 | 0.808454 | 3.07E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene49288 | 0.817584 | 3.06E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene49288 | 0.808751 | 2.66E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene49288 | 0.815383 | 9.51E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene49288 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene49288 | 0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene053677 | MS.gene49288 | 0.803306 | 3.71E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene49288 | 0.814098 | 1.83E-51 | -1.69E-46 |
| MS.gene055313 | MS.gene49288 | 0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene49288 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene49288 | 0.810265 | 1.26E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene49288 | 0.80102 | 1.10E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene49288 | 0.826168 | 3.14E-54 | -1.69E-46 |
| MS.gene055603 | MS.gene49288 | 0.806282 | 8.87E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene49288 | 0.802828 | 4.66E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene49288 | 0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene056522 | MS.gene49288 | -0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene49288 | 0.814416 | 1.56E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene49288 | 0.80236 | 5.82E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene49288 | 0.811234 | 7.75E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene49288 | 0.807628 | 4.61E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene49288 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene49288 | 0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene49288 | 0.830711 | 2.52E-55 | -1.69E-46 |
| MS.gene058852 | MS.gene49288 | 0.809106 | 2.23E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene49288 | 0.815784 | 7.74E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene49288 | 0.803901 | 2.79E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene49288 | 0.818317 | 2.09E-52 | -1.69E-46 |
| MS.gene059713 | MS.gene49288 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene059725 | MS.gene49288 | 0.804976 | 1.67E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene49288 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene49288 | 0.806584 | 7.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49288.t1 | MTR_1g069925 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 1.01e-111 | 323 |
| MS.gene49288.t1 | MTR_7g096940 | 69.604 | 227 | 44 | 3 | 183 | 387 | 161 | 384 | 1.11e-96 | 298 |
| MS.gene49288.t1 | MTR_1g085510 | 61.712 | 222 | 65 | 2 | 178 | 379 | 153 | 374 | 2.12e-74 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49288.t1 | AT1G65660 | 64.474 | 228 | 57 | 3 | 178 | 381 | 156 | 383 | 3.31e-89 | 279 |
| MS.gene49288.t1 | AT4G37120 | 65.471 | 223 | 53 | 3 | 183 | 381 | 161 | 383 | 6.76e-89 | 278 |
| MS.gene49288.t1 | AT3G45950 | 55.288 | 208 | 67 | 3 | 178 | 365 | 156 | 357 | 1.88e-66 | 216 |
| MS.gene49288.t1 | AT4G14385 | 68.056 | 144 | 40 | 2 | 3 | 143 | 2 | 142 | 1.28e-54 | 178 |
| MS.gene49288.t1 | AT4G14385 | 72.807 | 114 | 31 | 0 | 3 | 116 | 2 | 115 | 3.98e-48 | 161 |
| MS.gene49288.t1 | AT4G14385 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 9.28e-39 | 135 |
| MS.gene49288.t1 | AT4G14385 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 9.28e-39 | 135 |
| MS.gene49288.t1 | AT4G14385 | 72.527 | 91 | 25 | 0 | 3 | 93 | 2 | 92 | 7.56e-35 | 125 |
| MS.gene49288.t1 | AT4G14385 | 72.527 | 91 | 25 | 0 | 3 | 93 | 2 | 92 | 7.56e-35 | 125 |
| MS.gene49288.t1 | AT4G14385 | 72.527 | 91 | 25 | 0 | 3 | 93 | 2 | 92 | 7.56e-35 | 125 |
| MS.gene49288.t1 | AT4G14385 | 72.527 | 91 | 25 | 0 | 3 | 93 | 2 | 92 | 7.56e-35 | 125 |
| MS.gene49288.t1 | AT4G14385 | 72.527 | 91 | 25 | 0 | 3 | 93 | 2 | 92 | 7.56e-35 | 125 |
Find 83 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATGAAGGAATCTATTT+TGG | 0.164991 | 1.1:-52117705 | MS.gene49288:CDS |
| GGGAAGTCAGCTTAAGAAAT+TGG | 0.250207 | 1.1:-52118373 | MS.gene49288:CDS |
| TATGGAAACAAGTTATTTAC+AGG | 0.281655 | 1.1:-52121464 | MS.gene49288:CDS |
| TCTTCAGGAACCTGCGTATT+CGG | 0.286851 | 1.1:-52118126 | MS.gene49288:intron |
| CTCGACACAGGTTTATGATA+TGG | 0.290750 | 1.1:-52121482 | MS.gene49288:intron |
| ACGAAGCTCTTCATGAAGTT+TGG | 0.303537 | 1.1:+52121918 | None:intergenic |
| AGCTCGAAAGAAATTCTTAA+AGG | 0.318746 | 1.1:-52118394 | MS.gene49288:CDS |
| CTGATGACAAAGATGATCTA+AGG | 0.320659 | 1.1:-52118317 | MS.gene49288:CDS |
| CTTGCTCTCTTCGCATCTCT+TGG | 0.327976 | 1.1:+52119423 | None:intergenic |
| ACAGTGTGGCAATGTATTAA+AGG | 0.345831 | 1.1:-52121434 | MS.gene49288:CDS |
| ACCTCATACAGCTTCTCATT+TGG | 0.350359 | 1.1:+52118004 | None:intergenic |
| GGCGCACCTCTTCCTTTCTT+CGG | 0.350577 | 1.1:+52119444 | None:intergenic |
| CTTGACCACTATTCCTATAC+TGG | 0.354574 | 1.1:+52117864 | None:intergenic |
| CTTCAGGAACCTGCGTATTC+GGG | 0.356203 | 1.1:-52118125 | MS.gene49288:intron |
| TCAGATGGGAGATCAGATTT+TGG | 0.357334 | 1.1:-52119659 | MS.gene49288:intron |
| TTTCTTTCGAGCTTCATCTA+TGG | 0.369260 | 1.1:+52118404 | None:intergenic |
| GGTGGAACAATTTATGCAAA+TGG | 0.372296 | 1.1:-52119620 | MS.gene49288:CDS |
| AATGTATTAAAGGGATTTGA+AGG | 0.395885 | 1.1:-52121424 | MS.gene49288:CDS |
| TACATTGAAAGCATTTGATA+AGG | 0.402696 | 1.1:-52117813 | MS.gene49288:CDS |
| TTGCCACATCCTCACCAGTT+TGG | 0.403072 | 1.1:+52118340 | None:intergenic |
| AAGTTGATGTTTACAGTTTG+CGG | 0.409602 | 1.1:-52119077 | MS.gene49288:CDS |
| ACATTGAAAGCATTTGATAA+GGG | 0.418656 | 1.1:-52117812 | MS.gene49288:CDS |
| TAGGAATAGTGGTCAAGCTT+TGG | 0.428800 | 1.1:-52117858 | MS.gene49288:CDS |
| TAATGAAAAGAGCCTGTCTT+CGG | 0.428840 | 1.1:+52120697 | None:intergenic |
| TTGGAGAAGAACAGCCAAAC+TGG | 0.430169 | 1.1:-52118354 | MS.gene49288:CDS |
| TGGTCAAGCTTTGGAATTCA+AGG | 0.431984 | 1.1:-52117849 | MS.gene49288:CDS |
| TCACGCATTGACCTAGTCTT+GGG | 0.437332 | 1.1:+52118049 | None:intergenic |
| GCTCGAAAGAAATTCTTAAA+GGG | 0.445837 | 1.1:-52118393 | MS.gene49288:CDS |
| TTTGGTCCTGGTCGATCAAA+AGG | 0.448086 | 1.1:-52119641 | MS.gene49288:CDS |
| TTCACGCATTGACCTAGTCT+TGG | 0.450301 | 1.1:+52118048 | None:intergenic |
| AATGAAAAGAGCCTGTCTTC+GGG | 0.452201 | 1.1:+52120698 | None:intergenic |
| TTCAATCACAATGTCATGTC+AGG | 0.452440 | 1.1:+52119363 | None:intergenic |
| CAGTGTGGCAATGTATTAAA+GGG | 0.460090 | 1.1:-52121433 | MS.gene49288:CDS |
| ACAAGTTATTTACAGGATCC+TGG | 0.477906 | 1.1:-52121457 | MS.gene49288:CDS |
| GTGGAACAATTTATGCAAAT+GGG | 0.480539 | 1.1:-52119619 | MS.gene49288:CDS |
| GCTTCGTAATATTGAAAAGC+AGG | 0.480561 | 1.1:-52121902 | MS.gene49288:intron |
| ATGAGAGTACAGGAACTGTT+AGG | 0.482959 | 1.1:-52118275 | MS.gene49288:intron |
| TTTGGATCTGCAACTGAAAG+AGG | 0.484297 | 1.1:+52118022 | None:intergenic |
| CAGCCAAACTGGTGAGGATG+TGG | 0.487942 | 1.1:-52118343 | MS.gene49288:CDS |
| TCATGCTGGTAGAGTTATCA+AGG | 0.493653 | 1.1:-52117600 | MS.gene49288:CDS |
| AATAGGGCGATAACCAGTAT+AGG | 0.499353 | 1.1:-52117877 | MS.gene49288:intron |
| CATCTCCGTCTCAAGCTGAA+TGG | 0.506420 | 1.1:-52117769 | MS.gene49288:CDS |
| GAAACTGAAGTCTCAAATGA+AGG | 0.508211 | 1.1:-52117717 | MS.gene49288:CDS |
| CAAGAGATGCGAAGAGAGCA+AGG | 0.508415 | 1.1:-52119422 | MS.gene49288:CDS |
| AATACATTGCCACACTGTCC+AGG | 0.510409 | 1.1:+52121439 | None:intergenic |
| GATAACCAGTATAGGAATAG+TGG | 0.512770 | 1.1:-52117869 | MS.gene49288:CDS |
| TAGGCAGAAGAGCTTGCAGC+TGG | 0.517903 | 1.1:-52119771 | MS.gene49288:CDS |
| GAAAGTTTCAGCCCGAAGAC+AGG | 0.522864 | 1.1:-52120709 | MS.gene49288:CDS |
| TCCAAATGAGAAGCTGTATG+AGG | 0.538837 | 1.1:-52118005 | MS.gene49288:intron |
| GGTGAACCCTTCAGCAATGT+TGG | 0.540152 | 1.1:-52121962 | MS.gene49288:CDS |
| TTTGTTAGGTCAAAGTGAGA+TGG | 0.540733 | 1.1:-52117636 | MS.gene49288:CDS |
| CAGTGTTCTTTGTTGACGAT+AGG | 0.542807 | 1.1:+52121398 | None:intergenic |
| TTTGGCTCTTCTACTAAGCA+AGG | 0.544435 | 1.1:+52121936 | None:intergenic |
| AAGTATGGAAATGCAGCTGA+TGG | 0.546225 | 1.1:-52117680 | MS.gene49288:CDS |
| TATAGGGGTAAACCGAAGAA+AGG | 0.552151 | 1.1:-52119456 | MS.gene49288:intron |
| AAACATCAACTTCTACAAGT+TGG | 0.554678 | 1.1:+52119088 | None:intergenic |
| TGGTAGAGTTATCAAGGGAC+AGG | 0.557030 | 1.1:-52117594 | MS.gene49288:intron |
| CATTGAAAGCATTTGATAAG+GGG | 0.558758 | 1.1:-52117811 | MS.gene49288:CDS |
| GAGCTTGCAGCTGGACGAGA+CGG | 0.560192 | 1.1:-52119762 | MS.gene49288:intron |
| AGTATGGAAATGCAGCTGAT+GGG | 0.560945 | 1.1:-52117679 | MS.gene49288:CDS |
| TGACATTGTTAAGTGTTCAA+AGG | 0.566149 | 1.1:+52117437 | None:intergenic |
| AAGGAAGCCAACATTGCTGA+AGG | 0.567280 | 1.1:+52121955 | None:intergenic |
| AGATGATCTAAGGGTTGATG+AGG | 0.581075 | 1.1:-52118307 | MS.gene49288:CDS |
| GCAAAGGTTGATGAGAGTAC+AGG | 0.581822 | 1.1:-52118285 | MS.gene49288:CDS |
| TCAGAAACACACCGCTGGCG+AGG | 0.588747 | 1.1:+52120664 | None:intergenic |
| TGATGACAAAGATGATCTAA+GGG | 0.593033 | 1.1:-52118316 | MS.gene49288:CDS |
| GTATGGAAATGCAGCTGATG+GGG | 0.599243 | 1.1:-52117678 | MS.gene49288:CDS |
| CACACTACAATCCCAAGACT+AGG | 0.605414 | 1.1:-52118060 | MS.gene49288:CDS |
| ATGTATTAAAGGGATTTGAA+GGG | 0.608853 | 1.1:-52121423 | MS.gene49288:CDS |
| TAAAGCCATTCAGCTTGAGA+CGG | 0.611900 | 1.1:+52117764 | None:intergenic |
| TCTAAGGGTTGATGAGGCAA+AGG | 0.615496 | 1.1:-52118301 | MS.gene49288:CDS |
| GGTAAACCGAAGAAAGGAAG+AGG | 0.619973 | 1.1:-52119450 | MS.gene49288:CDS |
| ATCTTCAGTGACCTCGCCAG+CGG | 0.629189 | 1.1:-52120675 | MS.gene49288:intron |
| GAAGTTGAGTATGATCATGC+TGG | 0.634612 | 1.1:-52117614 | MS.gene49288:CDS |
| GGTCCTGGTCGATCAAAAGG+TGG | 0.634647 | 1.1:-52119638 | MS.gene49288:CDS |
| CAGTGTCCTCCCGAATACGC+AGG | 0.634957 | 1.1:+52118116 | None:intergenic |
| CAGGAACCTGCGTATTCGGG+AGG | 0.635060 | 1.1:-52118122 | MS.gene49288:CDS |
| GAAGAACAGCCAAACTGGTG+AGG | 0.635287 | 1.1:-52118349 | MS.gene49288:CDS |
| AAGAGATGCGAAGAGAGCAA+GGG | 0.657814 | 1.1:-52119421 | MS.gene49288:CDS |
| AGGAAGCCAACATTGCTGAA+GGG | 0.663989 | 1.1:+52121956 | None:intergenic |
| CATGCTGGTAGAGTTATCAA+GGG | 0.676489 | 1.1:-52117599 | MS.gene49288:CDS |
| TTACAGGATCCTGGACAGTG+TGG | 0.680227 | 1.1:-52121448 | MS.gene49288:CDS |
| TCCTTGAAAATGGAATCCGA+AGG | 0.698033 | 1.1:-52122093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATATTAATTTTT+AGG | - | chr1.1:52117532-52117551 | MS.gene49288:intron | 0.0% |
| !!! | AATAACTATATATTTTTACA+TGG | + | chr1.1:52118683-52118702 | None:intergenic | 10.0% |
| !!! | AATTATTTTGAATTTTCATT+TGG | - | chr1.1:52117725-52117744 | MS.gene49288:CDS | 10.0% |
| !!! | ATCATTTTTAATTAAAAATG+TGG | - | chr1.1:52120916-52120935 | MS.gene49288:intron | 10.0% |
| !!! | ATTATTTTGAATTTTCATTT+GGG | - | chr1.1:52117726-52117745 | MS.gene49288:CDS | 10.0% |
| !! | AATACAATTTAACCTTAAAT+TGG | - | chr1.1:52117975-52117994 | MS.gene49288:intron | 15.0% |
| !! | AATCACAAATCATATTTATT+AGG | - | chr1.1:52118393-52118412 | MS.gene49288:CDS | 15.0% |
| !! | AGTTGTATATTATTGTATTT+CGG | - | chr1.1:52120711-52120730 | MS.gene49288:CDS | 15.0% |
| !! | ATACAATTTAACCTTAAATT+GGG | - | chr1.1:52117976-52117995 | MS.gene49288:intron | 15.0% |
| !! | GTCATTATTAGAAATAATTA+TGG | - | chr1.1:52119551-52119570 | MS.gene49288:intron | 15.0% |
| !! | TAAAAAAAAATGATTGTTTG+TGG | - | chr1.1:52121009-52121028 | MS.gene49288:intron | 15.0% |
| !! | TAAAGATATATATGAAAGTT+AGG | + | chr1.1:52122020-52122039 | None:intergenic | 15.0% |
| !! | TATATAATTATCCAACTTAA+AGG | + | chr1.1:52121330-52121349 | None:intergenic | 15.0% |
| !! | TGTGGTTATTAATTTATATT+TGG | + | chr1.1:52119281-52119300 | None:intergenic | 15.0% |
| !!! | ACAATCATTTTTTTTTAACA+AGG | + | chr1.1:52121006-52121025 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTATCTAATTCT+GGG | + | chr1.1:52118911-52118930 | None:intergenic | 15.0% |
| !!! | ATTCTTTTGTAATTTCAATT+TGG | - | chr1.1:52117493-52117512 | MS.gene49288:intron | 15.0% |
| !!! | CAATCATTTTTTTTTAACAA+GGG | + | chr1.1:52121005-52121024 | None:intergenic | 15.0% |
| !!! | TAACTTTATTGTTTTTGAAT+TGG | - | chr1.1:52119958-52119977 | MS.gene49288:intron | 15.0% |
| !!! | TATATCTTTTTATCTAATTC+TGG | + | chr1.1:52118912-52118931 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTCTAAAAATTG+TGG | - | chr1.1:52121046-52121065 | MS.gene49288:intron | 15.0% |
| !!! | TGAATCTATTTTTTTTTTGT+TGG | - | chr1.1:52118780-52118799 | MS.gene49288:intron | 15.0% |
| !!! | TTATAAGAATTTTAAGATCA+TGG | - | chr1.1:52121785-52121804 | MS.gene49288:intron | 15.0% |
| !! | AAAAATCATCATGTTACTAT+AGG | - | chr1.1:52120056-52120075 | MS.gene49288:intron | 20.0% |
| !! | AAAATCATCATGTTACTATA+GGG | - | chr1.1:52120057-52120076 | MS.gene49288:intron | 20.0% |
| !! | AGCATTATTTAAATAATGCA+GGG | - | chr1.1:52121290-52121309 | MS.gene49288:intron | 20.0% |
| !! | CCATAAATGAATAAAAATCA+TGG | + | chr1.1:52118435-52118454 | None:intergenic | 20.0% |
| !! | CTCAATATTACTTATTAAGT+TGG | - | chr1.1:52120746-52120765 | MS.gene49288:intron | 20.0% |
| !! | GTGTTTGAATTAATAAGAAA+AGG | - | chr1.1:52118588-52118607 | MS.gene49288:intron | 20.0% |
| !! | GTTGTATATTATTGTATTTC+GGG | - | chr1.1:52120712-52120731 | MS.gene49288:CDS | 20.0% |
| !! | TAAACAGAATTGACAATAAA+AGG | + | chr1.1:52119655-52119674 | None:intergenic | 20.0% |
| !! | TAGCATTATTTAAATAATGC+AGG | - | chr1.1:52121289-52121308 | MS.gene49288:intron | 20.0% |
| !!! | AATCTTACTAAGATTTTAGA+TGG | - | chr1.1:52118556-52118575 | MS.gene49288:intron | 20.0% |
| !!! | AATGTTTTTTTTTCTTTCCA+AGG | + | chr1.1:52120506-52120525 | None:intergenic | 20.0% |
| !!! | AATTTTAATCCATTTGAAAC+AGG | - | chr1.1:52119234-52119253 | MS.gene49288:intron | 20.0% |
| !!! | AGTTTTAGCAAATATAAATC+TGG | + | chr1.1:52119482-52119501 | None:intergenic | 20.0% |
| !!! | ATAGAACATTTTCACTTTAT+TGG | + | chr1.1:52120532-52120551 | None:intergenic | 20.0% |
| !!! | ATTTTTATTCATTTATGGTC+AGG | - | chr1.1:52118437-52118456 | MS.gene49288:intron | 20.0% |
| !!! | CCATGATTTTTATTCATTTA+TGG | - | chr1.1:52118432-52118451 | MS.gene49288:intron | 20.0% |
| !!! | GATTAAATTTTCAATGCAAT+AGG | - | chr1.1:52117940-52117959 | MS.gene49288:intron | 20.0% |
| !!! | TAGAACATTTTCACTTTATT+GGG | + | chr1.1:52120531-52120550 | None:intergenic | 20.0% |
| !!! | TCTTTTATTTTAAACAACTG+TGG | + | chr1.1:52121094-52121113 | None:intergenic | 20.0% |
| !!! | TGTTTCAAATGGATTAAAAT+TGG | + | chr1.1:52119235-52119254 | None:intergenic | 20.0% |
| !!! | TTATATTTGCTAAAACTTAG+AGG | - | chr1.1:52119485-52119504 | MS.gene49288:intron | 20.0% |
| !!! | TTGATTTAATTTTTGTGATC+CGG | - | chr1.1:52120598-52120617 | MS.gene49288:intron | 20.0% |
| !!! | TTTGTTATCGATTTTAATTG+AGG | - | chr1.1:52120887-52120906 | MS.gene49288:intron | 20.0% |
| !!! | TTTTACTTGATTCGATATTT+GGG | - | chr1.1:52120643-52120662 | MS.gene49288:intron | 20.0% |
| !!! | TTTTTACTTGATTCGATATT+TGG | - | chr1.1:52120642-52120661 | MS.gene49288:intron | 20.0% |
| ! | AAATCATCATGTTACTATAG+GGG | - | chr1.1:52120058-52120077 | MS.gene49288:intron | 25.0% |
| ! | AATCATATTTATTAGGCATC+TGG | - | chr1.1:52118400-52118419 | MS.gene49288:CDS | 25.0% |
| ! | AATGTATTAAAGGGATTTGA+AGG | - | chr1.1:52118105-52118124 | MS.gene49288:CDS | 25.0% |
| ! | AATTAAATGCTTTACATGAG+TGG | - | chr1.1:52119429-52119448 | MS.gene49288:CDS | 25.0% |
| ! | ATATTTCCATTTATCTCAGA+TGG | - | chr1.1:52119855-52119874 | MS.gene49288:intron | 25.0% |
| ! | ATGCTTATTGTACTTGTATT+TGG | - | chr1.1:52121608-52121627 | MS.gene49288:intron | 25.0% |
| ! | ATGTATTAAAGGGATTTGAA+GGG | - | chr1.1:52118106-52118125 | MS.gene49288:CDS | 25.0% |
| ! | CATATGATATAATTGAGTCT+AGG | + | chr1.1:52119318-52119337 | None:intergenic | 25.0% |
| ! | CGAAAAGTAACATGAATTAA+GGG | + | chr1.1:52117468-52117487 | None:intergenic | 25.0% |
| ! | CTTTGTGCAACATAAAAAAT+TGG | - | chr1.1:52120345-52120364 | MS.gene49288:intron | 25.0% |
| ! | GAAGTCATTGAAATGTTTAT+AGG | + | chr1.1:52119799-52119818 | None:intergenic | 25.0% |
| ! | GCATTATTTAAATAATGCAG+GGG | - | chr1.1:52121291-52121310 | MS.gene49288:intron | 25.0% |
| ! | TACATATTTGACATGATTTG+CGG | + | chr1.1:52120013-52120032 | None:intergenic | 25.0% |
| ! | TATGGAAACAAGTTATTTAC+AGG | - | chr1.1:52118065-52118084 | MS.gene49288:CDS | 25.0% |
| ! | TATTTCCATTTATCTCAGAT+GGG | - | chr1.1:52119856-52119875 | MS.gene49288:intron | 25.0% |
| ! | TCCTCATTCTATGTATATAT+TGG | - | chr1.1:52120281-52120300 | MS.gene49288:intron | 25.0% |
| ! | TCGAAAAGTAACATGAATTA+AGG | + | chr1.1:52117469-52117488 | None:intergenic | 25.0% |
| ! | TTCAATGCAATAGGATAATT+GGG | - | chr1.1:52117949-52117968 | MS.gene49288:intron | 25.0% |
| ! | TTGACAATAAAAGGCTTAAA+AGG | + | chr1.1:52119646-52119665 | None:intergenic | 25.0% |
| ! | TTGTCAATTCTGTTTAATCA+TGG | - | chr1.1:52119659-52119678 | MS.gene49288:intron | 25.0% |
| ! | TTTCAATGCAATAGGATAAT+TGG | - | chr1.1:52117948-52117967 | MS.gene49288:intron | 25.0% |
| !! | AAAGCATTTAATTTCTCAAC+CGG | + | chr1.1:52119422-52119441 | None:intergenic | 25.0% |
| !! | AATATATGTTTCTGCGTAAT+AGG | - | chr1.1:52121635-52121654 | MS.gene49288:intron | 25.0% |
| !! | ATATATGTTTCTGCGTAATA+GGG | - | chr1.1:52121636-52121655 | MS.gene49288:intron | 25.0% |
| !! | GATCTTCATCTTTTTATTGT+AGG | - | chr1.1:52119739-52119758 | MS.gene49288:intron | 25.0% |
| !! | TATCTAATCATTTTCACAAG+TGG | + | chr1.1:52120567-52120586 | None:intergenic | 25.0% |
| !! | TCAAATGAAGGAATCTATTT+TGG | - | chr1.1:52121824-52121843 | MS.gene49288:intron | 25.0% |
| !! | TCATTTTATCATTGATGAAC+TGG | - | chr1.1:52121364-52121383 | MS.gene49288:intron | 25.0% |
| !! | TGTTTTATCAACATGAAACT+TGG | + | chr1.1:52119591-52119610 | None:intergenic | 25.0% |
| !!! | ACATTGAAAGCATTTGATAA+GGG | - | chr1.1:52121717-52121736 | MS.gene49288:intron | 25.0% |
| !!! | ACTTTTTCAATTTTAGCTTC+TGG | - | chr1.1:52117652-52117671 | MS.gene49288:CDS | 25.0% |
| !!! | ATTTTTAGGTCAAAAAAGTG+CGG | - | chr1.1:52117546-52117565 | MS.gene49288:intron | 25.0% |
| !!! | CTTTTTCAATTTTAGCTTCT+GGG | - | chr1.1:52117653-52117672 | MS.gene49288:CDS | 25.0% |
| !!! | TACATTGAAAGCATTTGATA+AGG | - | chr1.1:52121716-52121735 | MS.gene49288:intron | 25.0% |
| !!! | TAGCACGTTAATTTTTTACT+AGG | - | chr1.1:52119145-52119164 | MS.gene49288:intron | 25.0% |
| !!! | TGAATTTTGATTAGTGAGAT+AGG | + | chr1.1:52121553-52121572 | None:intergenic | 25.0% |
| !!! | TTACAACTATTTCTGCAAAA+AGG | - | chr1.1:52120824-52120843 | MS.gene49288:intron | 25.0% |
| AAACATCAACTTCTACAAGT+TGG | + | chr1.1:52120444-52120463 | None:intergenic | 30.0% | |
| AATCCAGTATAGTCAAAGAA+TGG | + | chr1.1:52117681-52117700 | None:intergenic | 30.0% | |
| ACAATAAAAGGCTTAAAAGG+AGG | + | chr1.1:52119643-52119662 | None:intergenic | 30.0% | |
| AGCTCGAAAGAAATTCTTAA+AGG | - | chr1.1:52121135-52121154 | MS.gene49288:intron | 30.0% | |
| ATATTTATTAGGCATCTGGT+CGG | - | chr1.1:52118404-52118423 | MS.gene49288:CDS | 30.0% | |
| ATGATAGAAGTGATTACAAC+AGG | - | chr1.1:52119168-52119187 | MS.gene49288:intron | 30.0% | |
| ATGATATAATTGAGTCTAGG+AGG | + | chr1.1:52119315-52119334 | None:intergenic | 30.0% | |
| ATGTACATTTCTATGAAGCA+CGG | - | chr1.1:52117800-52117819 | MS.gene49288:CDS | 30.0% | |
| CAATAAAAGGCTTAAAAGGA+GGG | + | chr1.1:52119642-52119661 | None:intergenic | 30.0% | |
| GAAATGTGAATGTAAACTTC+TGG | + | chr1.1:52119400-52119419 | None:intergenic | 30.0% | |
| GAAGTTTACATTCACATTTC+CGG | - | chr1.1:52119400-52119419 | MS.gene49288:CDS | 30.0% | |
| GAATTAAGGGTTATTACCTT+CGG | + | chr1.1:52117455-52117474 | None:intergenic | 30.0% | |
| GATACTCAAAACTACAGATT+CGG | + | chr1.1:52118320-52118339 | None:intergenic | 30.0% | |
| GCAAAGTTGAAATAAATGAC+AGG | + | chr1.1:52119460-52119479 | None:intergenic | 30.0% | |
| GCCAATATATACATAGAATG+AGG | + | chr1.1:52120285-52120304 | None:intergenic | 30.0% | |
| GCTCGAAAGAAATTCTTAAA+GGG | - | chr1.1:52121136-52121155 | MS.gene49288:intron | 30.0% | |
| GTGGAACAATTTATGCAAAT+GGG | - | chr1.1:52119910-52119929 | MS.gene49288:intron | 30.0% | |
| TAACAAAACAGAATGCATGA+AGG | + | chr1.1:52118738-52118757 | None:intergenic | 30.0% | |
| TAGAAATAATTATGGCTGAC+AGG | - | chr1.1:52119559-52119578 | MS.gene49288:intron | 30.0% | |
| TAGGAGGAAATTATTAACTG+TGG | + | chr1.1:52119299-52119318 | None:intergenic | 30.0% | |
| TGATGACAAAGATGATCTAA+GGG | - | chr1.1:52121213-52121232 | MS.gene49288:intron | 30.0% | |
| TGTGTTTGATCTTTGATACA+CGG | - | chr1.1:52119345-52119364 | MS.gene49288:intron | 30.0% | |
| TTACATCCTTATCATGAAAG+TGG | - | chr1.1:52119083-52119102 | MS.gene49288:CDS | 30.0% | |
| ! | AAAAGGAGGGATCATTTTAT+GGG | + | chr1.1:52119629-52119648 | None:intergenic | 30.0% |
| ! | ACAAAAGTTTTCTTGGAAGT+TGG | + | chr1.1:52121878-52121897 | None:intergenic | 30.0% |
| ! | ATAGTACTTTTCAGTGACTT+TGG | - | chr1.1:52119108-52119127 | MS.gene49288:intron | 30.0% |
| ! | CAACTTTCTGCTAAACTTTT+TGG | - | chr1.1:52120205-52120224 | MS.gene49288:intron | 30.0% |
| ! | CTTCCAAGAAAACTTTTGTT+AGG | - | chr1.1:52121879-52121898 | MS.gene49288:intron | 30.0% |
| ! | TAAAAGGAGGGATCATTTTA+TGG | + | chr1.1:52119630-52119649 | None:intergenic | 30.0% |
| ! | TCTGGAACAATAAATTACCA+GGG | + | chr1.1:52119382-52119401 | None:intergenic | 30.0% |
| ! | TCTTTTTATCTAATTCTGGG+TGG | + | chr1.1:52118908-52118927 | None:intergenic | 30.0% |
| ! | TGACCTAACAAAAGTTTTCT+TGG | + | chr1.1:52121885-52121904 | None:intergenic | 30.0% |
| !! | AAGTTGATGTTTACAGTTTG+CGG | - | chr1.1:52120452-52120471 | MS.gene49288:intron | 30.0% |
| !! | CATTGAAAGCATTTGATAAG+GGG | - | chr1.1:52121718-52121737 | MS.gene49288:intron | 30.0% |
| !! | GAATCTATTTTGGAGAAGTA+TGG | - | chr1.1:52121834-52121853 | MS.gene49288:intron | 30.0% |
| !! | TGTTTCTGATTTTCAGTGAT+AGG | - | chr1.1:52118879-52118898 | MS.gene49288:intron | 30.0% |
| !! | TTCTGGAACAATAAATTACC+AGG | + | chr1.1:52119383-52119402 | None:intergenic | 30.0% |
| !!! | TTTTCAGTGACTTTGGTTTT+TGG | - | chr1.1:52119115-52119134 | MS.gene49288:intron | 30.0% |
| !!! | TTTTTTTCTTTCCAAGGTAG+TGG | + | chr1.1:52120500-52120519 | None:intergenic | 30.0% |
| AAATGCTTTACATGAGTGGA+AGG | - | chr1.1:52119433-52119452 | MS.gene49288:CDS | 35.0% | |
| ACAAGTTATTTACAGGATCC+TGG | - | chr1.1:52118072-52118091 | MS.gene49288:CDS | 35.0% | |
| ACAGTGTGGCAATGTATTAA+AGG | - | chr1.1:52118095-52118114 | MS.gene49288:CDS | 35.0% | |
| AGATGCCTACACTTGATATA+TGG | + | chr1.1:52119686-52119705 | None:intergenic | 35.0% | |
| ATGGTCCATATATCAAGTGT+AGG | - | chr1.1:52119678-52119697 | MS.gene49288:intron | 35.0% | |
| ATTCGGACAGAAAATTTCGA+TGG | + | chr1.1:52118303-52118322 | None:intergenic | 35.0% | |
| CAAGTAGATGACCCAATTTA+AGG | + | chr1.1:52117990-52118009 | None:intergenic | 35.0% | |
| CAGTGTGGCAATGTATTAAA+GGG | - | chr1.1:52118096-52118115 | MS.gene49288:CDS | 35.0% | |
| CTAGTCACACTCTTATTACT+TGG | + | chr1.1:52119012-52119031 | None:intergenic | 35.0% | |
| CTATGACCACTTTCATGATA+AGG | + | chr1.1:52119092-52119111 | None:intergenic | 35.0% | |
| CTGATGACAAAGATGATCTA+AGG | - | chr1.1:52121212-52121231 | MS.gene49288:intron | 35.0% | |
| GAAACTGAAGTCTCAAATGA+AGG | - | chr1.1:52121812-52121831 | MS.gene49288:intron | 35.0% | |
| GAAATGCTTCCTGTTTCAAA+TGG | + | chr1.1:52119246-52119265 | None:intergenic | 35.0% | |
| GATAACCAGTATAGGAATAG+TGG | - | chr1.1:52121660-52121679 | MS.gene49288:intron | 35.0% | |
| GCTAAAATGCCTTTATCTTC+AGG | - | chr1.1:52121388-52121407 | MS.gene49288:intron | 35.0% | |
| GCTTCGTAATATTGAAAAGC+AGG | - | chr1.1:52117627-52117646 | MS.gene49288:CDS | 35.0% | |
| GGTGGAACAATTTATGCAAA+TGG | - | chr1.1:52119909-52119928 | MS.gene49288:intron | 35.0% | |
| GTCAGGAAAAGCAAAATCAT+GGG | - | chr1.1:52118454-52118473 | MS.gene49288:intron | 35.0% | |
| GTTCCATTCTTTGACTATAC+TGG | - | chr1.1:52117675-52117694 | MS.gene49288:CDS | 35.0% | |
| TAATGAAAAGAGCCTGTCTT+CGG | + | chr1.1:52118835-52118854 | None:intergenic | 35.0% | |
| TATTTATTAGGCATCTGGTC+GGG | - | chr1.1:52118405-52118424 | MS.gene49288:CDS | 35.0% | |
| TGGAAAAACCTGCATTAGAT+AGG | - | chr1.1:52120240-52120259 | MS.gene49288:intron | 35.0% | |
| TTATCCATCCTATCATCCTT+AGG | + | chr1.1:52118342-52118361 | None:intergenic | 35.0% | |
| TTCAATCACAATGTCATGTC+AGG | + | chr1.1:52120169-52120188 | None:intergenic | 35.0% | |
| TTGAGTATCCTAAGGATGAT+AGG | - | chr1.1:52118331-52118350 | MS.gene49288:CDS | 35.0% | |
| TTTCGATGGTACTTCTTCTA+CGG | + | chr1.1:52118289-52118308 | None:intergenic | 35.0% | |
| TTTCTTTCGAGCTTCATCTA+TGG | + | chr1.1:52121128-52121147 | None:intergenic | 35.0% | |
| TTTGTTAGGTCAAAGTGAGA+TGG | - | chr1.1:52121893-52121912 | MS.gene49288:intron | 35.0% | |
| ! | AGTTGATTGGTCCTTTAAGT+TGG | - | chr1.1:52121316-52121335 | MS.gene49288:intron | 35.0% |
| ! | ATCATTTTATGGGATAGGAG+AGG | + | chr1.1:52119619-52119638 | None:intergenic | 35.0% |
| ! | CAAGTAATAAGAGTGTGACT+AGG | - | chr1.1:52119010-52119029 | MS.gene49288:intron | 35.0% |
| ! | TAGTCGTGGATTTTCTACTT+AGG | - | chr1.1:52120311-52120330 | MS.gene49288:intron | 35.0% |
| ! | TATCTAATGCAGGTTTTTCC+AGG | + | chr1.1:52120241-52120260 | None:intergenic | 35.0% |
| ! | TGCAAAAAGGTGTGTAAAGA+TGG | - | chr1.1:52120837-52120856 | MS.gene49288:intron | 35.0% |
| ! | TGCTGAAAGCACAATGAAAT+TGG | - | chr1.1:52118626-52118645 | MS.gene49288:intron | 35.0% |
| ! | TGTTTACAGTTTGCGGTTTT+TGG | - | chr1.1:52120459-52120478 | MS.gene49288:intron | 35.0% |
| !! | GATCAAACTTAGTTCTGTAC+AGG | + | chr1.1:52120420-52120439 | None:intergenic | 35.0% |
| !!! | CTGTAGTTTTGAGTATCCTA+AGG | - | chr1.1:52118323-52118342 | MS.gene49288:CDS | 35.0% |
| !!! | CTTTTTGGAATATAAGAGCC+TGG | - | chr1.1:52120220-52120239 | MS.gene49288:intron | 35.0% |
| AAGTATGGAAATGCAGCTGA+TGG | - | chr1.1:52121849-52121868 | MS.gene49288:intron | 40.0% | |
| AATAGGGCGATAACCAGTAT+AGG | - | chr1.1:52121652-52121671 | MS.gene49288:intron | 40.0% | |
| AATGAAAAGAGCCTGTCTTC+GGG | + | chr1.1:52118834-52118853 | None:intergenic | 40.0% | |
| ACCTCATACAGCTTCTCATT+TGG | + | chr1.1:52121528-52121547 | None:intergenic | 40.0% | |
| ACGAAGCTCTTCATGAAGTT+TGG | + | chr1.1:52117614-52117633 | None:intergenic | 40.0% | |
| AGGGTATGATCAACTAAGCT+AGG | + | chr1.1:52120986-52121005 | None:intergenic | 40.0% | |
| AGTATGGAAATGCAGCTGAT+GGG | - | chr1.1:52121850-52121869 | MS.gene49288:intron | 40.0% | |
| ATGTAGTAACTACCTTGCTC+CGG | + | chr1.1:52120620-52120639 | None:intergenic | 40.0% | |
| CAGTGTTCTTTGTTGACGAT+AGG | + | chr1.1:52118134-52118153 | None:intergenic | 40.0% | |
| CATGCTGGTAGAGTTATCAA+GGG | - | chr1.1:52121930-52121949 | MS.gene49288:CDS | 40.0% | |
| CTACCTGTTCTTTCAGTACT+TGG | - | chr1.1:52118237-52118256 | MS.gene49288:intron | 40.0% | |
| CTCGACACAGGTTTATGATA+TGG | - | chr1.1:52118047-52118066 | MS.gene49288:CDS | 40.0% | |
| CTTGACCACTATTCCTATAC+TGG | + | chr1.1:52121668-52121687 | None:intergenic | 40.0% | |
| GAAGTTGAGTATGATCATGC+TGG | - | chr1.1:52121915-52121934 | MS.gene49288:CDS | 40.0% | |
| GACATTGTGATTGAACATGC+TGG | - | chr1.1:52120174-52120193 | MS.gene49288:intron | 40.0% | |
| GGGAAGTCAGCTTAAGAAAT+TGG | - | chr1.1:52121156-52121175 | MS.gene49288:intron | 40.0% | |
| GGTCAGGAAAAGCAAAATCA+TGG | - | chr1.1:52118453-52118472 | MS.gene49288:intron | 40.0% | |
| GTAGAAAATCCACGACTACT+AGG | + | chr1.1:52120309-52120328 | None:intergenic | 40.0% | |
| GTAGGCATCTTATCTCAACA+GGG | - | chr1.1:52119696-52119715 | MS.gene49288:intron | 40.0% | |
| GTATCCTAAGGATGATAGGA+TGG | - | chr1.1:52118335-52118354 | MS.gene49288:CDS | 40.0% | |
| TAAAGCCATTCAGCTTGAGA+CGG | + | chr1.1:52121768-52121787 | None:intergenic | 40.0% | |
| TAGGAATAGTGGTCAAGCTT+TGG | - | chr1.1:52121671-52121690 | MS.gene49288:intron | 40.0% | |
| TATAGGGGTAAACCGAAGAA+AGG | - | chr1.1:52120073-52120092 | MS.gene49288:intron | 40.0% | |
| TCATGCTGGTAGAGTTATCA+AGG | - | chr1.1:52121929-52121948 | MS.gene49288:CDS | 40.0% | |
| TCCAAATGAGAAGCTGTATG+AGG | - | chr1.1:52121524-52121543 | MS.gene49288:intron | 40.0% | |
| TGGGTCACACTCTTATTACT+TGG | + | chr1.1:52118952-52118971 | None:intergenic | 40.0% | |
| TGTAGGCATCTTATCTCAAC+AGG | - | chr1.1:52119695-52119714 | MS.gene49288:intron | 40.0% | |
| TTTGGATCTGCAACTGAAAG+AGG | + | chr1.1:52121510-52121529 | None:intergenic | 40.0% | |
| ! | AATTTTTGTGATCCGGAGCA+AGG | - | chr1.1:52120605-52120624 | MS.gene49288:intron | 40.0% |
| ! | ATAAGAGTGTGACTAGGTCT+TGG | - | chr1.1:52119016-52119035 | MS.gene49288:intron | 40.0% |
| ! | ATGAGAGTACAGGAACTGTT+AGG | - | chr1.1:52121254-52121273 | MS.gene49288:intron | 40.0% |
| ! | ATTTGGGACACTGAAAAGCT+TGG | - | chr1.1:52120659-52120678 | MS.gene49288:intron | 40.0% |
| ! | GAGGGATCATTTTATGGGAT+AGG | + | chr1.1:52119624-52119643 | None:intergenic | 40.0% |
| ! | GATCTCCCATCTGAGATAAA+TGG | + | chr1.1:52119864-52119883 | None:intergenic | 40.0% |
| ! | GTGTATTTTGTTCTCGACAC+AGG | - | chr1.1:52118035-52118054 | MS.gene49288:CDS | 40.0% |
| ! | TAATGCAGGGGAAAGTTGAT+TGG | - | chr1.1:52121303-52121322 | MS.gene49288:intron | 40.0% |
| ! | TCAGATGGGAGATCAGATTT+TGG | - | chr1.1:52119870-52119889 | MS.gene49288:intron | 40.0% |
| ! | TCTTTGATACACGGAGTACT+AGG | - | chr1.1:52119354-52119373 | MS.gene49288:intron | 40.0% |
| ! | TTTTTGTTGGCAGCTTGAAG+CGG | - | chr1.1:52118793-52118812 | MS.gene49288:intron | 40.0% |
| !! | AGATGATCTAAGGGTTGATG+AGG | - | chr1.1:52121222-52121241 | MS.gene49288:intron | 40.0% |
| !! | CTACCAAGTACTGAAAGAAC+AGG | + | chr1.1:52118243-52118262 | None:intergenic | 40.0% |
| !! | GGCAAGATTTCTTTGAAGCT+TGG | + | chr1.1:52120965-52120984 | None:intergenic | 40.0% |
| !! | TGAAACAGGAAGCATTTCAG+AGG | - | chr1.1:52119248-52119267 | MS.gene49288:intron | 40.0% |
| !! | TGGTCAAGCTTTGGAATTCA+AGG | - | chr1.1:52121680-52121699 | MS.gene49288:intron | 40.0% |
| !! | TTACAGTTTGCGGTTTTTGG+TGG | - | chr1.1:52120462-52120481 | MS.gene49288:intron | 40.0% |
| !! | TTTGGCTCTTCTACTAAGCA+AGG | + | chr1.1:52117596-52117615 | None:intergenic | 40.0% |
| !!! | TACAGTTTGCGGTTTTTGGT+GGG | - | chr1.1:52120463-52120482 | MS.gene49288:intron | 40.0% |
| AAGAGATGCGAAGAGAGCAA+GGG | - | chr1.1:52120108-52120127 | MS.gene49288:intron | 45.0% | |
| AAGGAAGCCAACATTGCTGA+AGG | + | chr1.1:52117577-52117596 | None:intergenic | 45.0% | |
| AATACATTGCCACACTGTCC+AGG | + | chr1.1:52118093-52118112 | None:intergenic | 45.0% | |
| ACCAATGGCCTATCTAATGC+AGG | + | chr1.1:52120251-52120270 | None:intergenic | 45.0% | |
| ACCTGCATTAGATAGGCCAT+TGG | - | chr1.1:52120247-52120266 | MS.gene49288:intron | 45.0% | |
| ACGCAGGTTCCTGAAGATAA+AGG | + | chr1.1:52121400-52121419 | None:intergenic | 45.0% | |
| ACTCACTGTGATACTGTGCT+GGG | - | chr1.1:52118508-52118527 | MS.gene49288:intron | 45.0% | |
| AGGAAGCCAACATTGCTGAA+GGG | + | chr1.1:52117576-52117595 | None:intergenic | 45.0% | |
| CACACTACAATCCCAAGACT+AGG | - | chr1.1:52121469-52121488 | MS.gene49288:CDS | 45.0% | |
| GAAAATCAGAAACACACCGC+TGG | + | chr1.1:52118873-52118892 | None:intergenic | 45.0% | |
| GAGGAATTGCAGAGAACCAA+TGG | + | chr1.1:52120266-52120285 | None:intergenic | 45.0% | |
| GGTAAACCGAAGAAAGGAAG+AGG | - | chr1.1:52120079-52120098 | MS.gene49288:intron | 45.0% | |
| GTATGGAAATGCAGCTGATG+GGG | - | chr1.1:52121851-52121870 | MS.gene49288:intron | 45.0% | |
| GTTGAGTTAAGAGTTTCGCG+TGG | - | chr1.1:52119190-52119209 | MS.gene49288:intron | 45.0% | |
| TACTCACTGTGATACTGTGC+TGG | - | chr1.1:52118507-52118526 | MS.gene49288:intron | 45.0% | |
| TCTTCAGGAACCTGCGTATT+CGG | - | chr1.1:52121403-52121422 | MS.gene49288:CDS | 45.0% | |
| TGGTAGAGTTATCAAGGGAC+AGG | - | chr1.1:52121935-52121954 | MS.gene49288:CDS | 45.0% | |
| TTGGAGAAGAACAGCCAAAC+TGG | - | chr1.1:52121175-52121194 | MS.gene49288:intron | 45.0% | |
| TTTGGTCCTGGTCGATCAAA+AGG | - | chr1.1:52119888-52119907 | MS.gene49288:intron | 45.0% | |
| ! | AATCCAGAGTACCACTACCT+TGG | - | chr1.1:52120486-52120505 | MS.gene49288:intron | 45.0% |
| ! | TCACGCATTGACCTAGTCTT+GGG | + | chr1.1:52121483-52121502 | None:intergenic | 45.0% |
| ! | TTCACGCATTGACCTAGTCT+TGG | + | chr1.1:52121484-52121503 | None:intergenic | 45.0% |
| ! | TTTCCAAGGTAGTGGTACTC+TGG | + | chr1.1:52120492-52120511 | None:intergenic | 45.0% |
| !! | ATATTGGCTCCTAGTAGTCG+TGG | - | chr1.1:52120297-52120316 | MS.gene49288:intron | 45.0% |
| !! | GCAAAGGTTGATGAGAGTAC+AGG | - | chr1.1:52121244-52121263 | MS.gene49288:intron | 45.0% |
| !! | TCTAAGGGTTGATGAGGCAA+AGG | - | chr1.1:52121228-52121247 | MS.gene49288:intron | 45.0% |
| !! | TAAAAATATATAGTTATTTA+TGG | - | chr1.1:52118685-52118704 | MS.gene49288:intron | 5.0% |
| !! | TCAAATAAAAAATTAATAAA+AGG | + | chr1.1:52117767-52117786 | None:intergenic | 5.0% |
| !!! | TTTTAATAAAAATTATGATT+AGG | + | chr1.1:52120942-52120961 | None:intergenic | 5.0% |
| CAAGAGATGCGAAGAGAGCA+AGG | - | chr1.1:52120107-52120126 | MS.gene49288:intron | 50.0% | |
| CATCTCCGTCTCAAGCTGAA+TGG | - | chr1.1:52121760-52121779 | MS.gene49288:intron | 50.0% | |
| CTTCAGGAACCTGCGTATTC+GGG | - | chr1.1:52121404-52121423 | MS.gene49288:CDS | 50.0% | |
| CTTGCTCTCTTCGCATCTCT+TGG | + | chr1.1:52120109-52120128 | None:intergenic | 50.0% | |
| GAAAGTTTCAGCCCGAAGAC+AGG | - | chr1.1:52118820-52118839 | MS.gene49288:intron | 50.0% | |
| GAAGAACAGCCAAACTGGTG+AGG | - | chr1.1:52121180-52121199 | MS.gene49288:intron | 50.0% | |
| GGGACACTGAAAAGCTTGGA+TGG | - | chr1.1:52120663-52120682 | MS.gene49288:intron | 50.0% | |
| GGTGAACCCTTCAGCAATGT+TGG | - | chr1.1:52117567-52117586 | MS.gene49288:intron | 50.0% | |
| TTACAGGATCCTGGACAGTG+TGG | - | chr1.1:52118081-52118100 | MS.gene49288:CDS | 50.0% | |
| TTGCCACATCCTCACCAGTT+TGG | + | chr1.1:52121192-52121211 | None:intergenic | 50.0% | |
| ! | GTTCCACCTTTTGATCGACC+AGG | + | chr1.1:52119897-52119916 | None:intergenic | 50.0% |
| !! | CAGAAGTGTCAGTGCTACAG+AGG | - | chr1.1:52117897-52117916 | MS.gene49288:intron | 50.0% |
| !! | GGGAGATCAGATTTTGGTCC+TGG | - | chr1.1:52119876-52119895 | MS.gene49288:intron | 50.0% |
| ATCTTCAGTGACCTCGCCAG+CGG | - | chr1.1:52118854-52118873 | MS.gene49288:intron | 55.0% | |
| CAGCCAAACTGGTGAGGATG+TGG | - | chr1.1:52121186-52121205 | MS.gene49288:intron | 55.0% | |
| GAAGCACGGACACAACAACG+CGG | - | chr1.1:52117814-52117833 | MS.gene49288:CDS | 55.0% | |
| GGCGCACCTCTTCCTTTCTT+CGG | + | chr1.1:52120088-52120107 | None:intergenic | 55.0% | |
| GGTCCTGGTCGATCAAAAGG+TGG | - | chr1.1:52119891-52119910 | MS.gene49288:intron | 55.0% | |
| TAGGCAGAAGAGCTTGCAGC+TGG | - | chr1.1:52119758-52119777 | MS.gene49288:intron | 55.0% | |
| ! | ACACGGAGTACTAGGAACCC+TGG | - | chr1.1:52119362-52119381 | MS.gene49288:intron | 55.0% |
| CAGGAACCTGCGTATTCGGG+AGG | - | chr1.1:52121407-52121426 | MS.gene49288:CDS | 60.0% | |
| CAGTGTCCTCCCGAATACGC+AGG | + | chr1.1:52121416-52121435 | None:intergenic | 60.0% | |
| GAGCTTGCAGCTGGACGAGA+CGG | - | chr1.1:52119767-52119786 | MS.gene49288:CDS | 60.0% | |
| TCAGAAACACACCGCTGGCG+AGG | + | chr1.1:52118868-52118887 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52117445 | 52122106 | 52117445 | ID=MS.gene49288 |
| chr1.1 | mRNA | 52117445 | 52122106 | 52117445 | ID=MS.gene49288.t1;Parent=MS.gene49288 |
| chr1.1 | exon | 52122094 | 52122106 | 52122094 | ID=MS.gene49288.t1.exon1;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52122094 | 52122106 | 52122094 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52121903 | 52121997 | 52121903 | ID=MS.gene49288.t1.exon2;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52121903 | 52121997 | 52121903 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52121394 | 52121494 | 52121394 | ID=MS.gene49288.t1.exon3;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52121394 | 52121494 | 52121394 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52120676 | 52120745 | 52120676 | ID=MS.gene49288.t1.exon4;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52120676 | 52120745 | 52120676 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52119763 | 52119790 | 52119763 | ID=MS.gene49288.t1.exon5;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52119763 | 52119790 | 52119763 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52119617 | 52119677 | 52119617 | ID=MS.gene49288.t1.exon6;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52119617 | 52119677 | 52119617 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52119372 | 52119473 | 52119372 | ID=MS.gene49288.t1.exon7;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52119372 | 52119473 | 52119372 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52119058 | 52119125 | 52119058 | ID=MS.gene49288.t1.exon8;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52119058 | 52119125 | 52119058 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52118276 | 52118438 | 52118276 | ID=MS.gene49288.t1.exon9;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52118276 | 52118438 | 52118276 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52118006 | 52118141 | 52118006 | ID=MS.gene49288.t1.exon10;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52118006 | 52118141 | 52118006 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52117595 | 52117894 | 52117595 | ID=MS.gene49288.t1.exon11;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52117595 | 52117894 | 52117595 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| chr1.1 | exon | 52117445 | 52117480 | 52117445 | ID=MS.gene49288.t1.exon12;Parent=MS.gene49288.t1 |
| chr1.1 | CDS | 52117445 | 52117480 | 52117445 | ID=cds.MS.gene49288.t1;Parent=MS.gene49288.t1 |
| Gene Sequence |
| Protein sequence |
