Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49885.t1 | P30074.1 | 99 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 2.10E-220 | 774.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49885.t1 | P30074 | 99.0 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 5.1e-223 | 774.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49885.t1 | G7KR33 | 99.0 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 2.0e-220 | 774.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene49885 | 0.841989 | 3.40E-58 | -1.69E-46 |
| MS.gene050883 | MS.gene49885 | 0.867579 | 1.23E-65 | -1.69E-46 |
| MS.gene051127 | MS.gene49885 | 0.82271 | 2.05E-53 | -1.69E-46 |
| MS.gene05141 | MS.gene49885 | 0.820766 | 5.77E-53 | -1.69E-46 |
| MS.gene051946 | MS.gene49885 | 0.840564 | 8.06E-58 | -1.69E-46 |
| MS.gene053203 | MS.gene49885 | -0.803463 | 3.44E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene49885 | 0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene053826 | MS.gene49885 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene49885 | 0.813709 | 2.23E-51 | -1.69E-46 |
| MS.gene055139 | MS.gene49885 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene055401 | MS.gene49885 | 0.809753 | 1.62E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene49885 | 0.895446 | 9.52E-76 | -1.69E-46 |
| MS.gene056311 | MS.gene49885 | 0.876883 | 9.79E-69 | -1.69E-46 |
| MS.gene056313 | MS.gene49885 | 0.884416 | 1.95E-71 | -1.69E-46 |
| MS.gene057014 | MS.gene49885 | 0.829016 | 6.51E-55 | -1.69E-46 |
| MS.gene057291 | MS.gene49885 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene057293 | MS.gene49885 | 0.804101 | 2.54E-49 | -1.69E-46 |
| MS.gene058111 | MS.gene49885 | 0.821651 | 3.60E-53 | -1.69E-46 |
| MS.gene058170 | MS.gene49885 | 0.810728 | 9.98E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene49885 | 0.85598 | 4.38E-62 | -1.69E-46 |
| MS.gene058173 | MS.gene49885 | 0.849678 | 2.77E-60 | -1.69E-46 |
| MS.gene058174 | MS.gene49885 | 0.809471 | 1.86E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene49885 | 0.851723 | 7.37E-61 | -1.69E-46 |
| MS.gene058494 | MS.gene49885 | 0.802561 | 5.29E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene49885 | 0.827463 | 1.54E-54 | -1.69E-46 |
| MS.gene060187 | MS.gene49885 | 0.824882 | 6.35E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene49885 | -0.807784 | 4.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49885.t1 | MTR_7g016820 | 98.972 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 0.0 | 798 |
| MS.gene49885.t1 | MTR_7g016720 | 98.972 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 0.0 | 798 |
| MS.gene49885.t1 | MTR_7g016780 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 795 |
| MS.gene49885.t1 | MTR_7g016700 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 795 |
| MS.gene49885.t1 | MTR_7g016800 | 98.201 | 389 | 7 | 0 | 1 | 389 | 1 | 389 | 0.0 | 794 |
| MS.gene49885.t1 | MTR_1g098140 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
| MS.gene49885.t1 | MTR_5g007730 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
| MS.gene49885.t1 | MTR_1g097935 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
| MS.gene49885.t1 | MTR_1g097910 | 97.429 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
| MS.gene49885.t1 | MTR_5g007760 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
| MS.gene49885.t1 | MTR_5g007717 | 95.373 | 389 | 18 | 0 | 1 | 389 | 1 | 389 | 0.0 | 776 |
| MS.gene49885.t1 | MTR_5g007713 | 95.373 | 389 | 18 | 0 | 1 | 389 | 1 | 389 | 0.0 | 775 |
| MS.gene49885.t1 | MTR_3g083910 | 89.948 | 388 | 39 | 0 | 1 | 388 | 1 | 388 | 0.0 | 746 |
| MS.gene49885.t1 | MTR_3g083920 | 90.206 | 388 | 38 | 0 | 1 | 388 | 1 | 388 | 0.0 | 745 |
| MS.gene49885.t1 | MTR_2g058470 | 87.661 | 389 | 48 | 0 | 1 | 389 | 1 | 389 | 0.0 | 719 |
| MS.gene49885.t1 | MTR_7g084300 | 80.977 | 389 | 74 | 0 | 1 | 389 | 1 | 389 | 0.0 | 676 |
| MS.gene49885.t1 | MTR_3g086260 | 81.186 | 388 | 73 | 0 | 1 | 388 | 1 | 388 | 0.0 | 675 |
| MS.gene49885.t1 | MTR_7g113405 | 95.710 | 303 | 13 | 0 | 87 | 389 | 1 | 303 | 0.0 | 595 |
| MS.gene49885.t1 | MTR_3g088675 | 67.352 | 389 | 127 | 0 | 1 | 389 | 1 | 389 | 0.0 | 583 |
| MS.gene49885.t1 | MTR_5g007740 | 80.675 | 326 | 63 | 0 | 64 | 389 | 1 | 326 | 0.0 | 550 |
| MS.gene49885.t1 | MTR_5g007723 | 68.262 | 397 | 77 | 5 | 12 | 389 | 32 | 398 | 0.0 | 529 |
| MS.gene49885.t1 | MTR_5g007770 | 78.333 | 300 | 32 | 2 | 70 | 369 | 1 | 267 | 8.99e-169 | 473 |
| MS.gene49885.t1 | MTR_3g088670 | 49.231 | 390 | 184 | 7 | 10 | 388 | 2 | 388 | 7.09e-129 | 376 |
| MS.gene49885.t1 | MTR_4g075560 | 42.895 | 380 | 210 | 4 | 11 | 387 | 13 | 388 | 3.52e-103 | 310 |
| MS.gene49885.t1 | MTR_4g078730 | 38.070 | 373 | 224 | 2 | 15 | 387 | 24 | 389 | 1.13e-93 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49885.t1 | AT5G13930 | 82.732 | 388 | 66 | 1 | 3 | 389 | 8 | 395 | 0.0 | 676 |
| MS.gene49885.t1 | AT4G34850 | 41.114 | 377 | 218 | 3 | 15 | 389 | 18 | 392 | 2.07e-97 | 296 |
| MS.gene49885.t1 | AT4G00040 | 40.051 | 392 | 223 | 6 | 1 | 387 | 1 | 385 | 2.04e-96 | 293 |
| MS.gene49885.t1 | AT1G02050 | 39.332 | 389 | 225 | 6 | 2 | 387 | 12 | 392 | 9.72e-88 | 271 |
| MS.gene49885.t1 | AT4G34850 | 40.625 | 320 | 187 | 2 | 72 | 389 | 1 | 319 | 7.40e-82 | 253 |
| MS.gene49885.t1 | AT3G52160 | 28.049 | 246 | 151 | 11 | 150 | 387 | 97 | 324 | 1.45e-11 | 65.5 |
Find 96 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATAGGTTTCTCAATTTC+TGG | 0.117134 | 7.4:+83275035 | None:intergenic |
| CTTGAATGGGGTGTATTATT+TGG | 0.169989 | 7.4:-83274630 | MS.gene49885:CDS |
| AGAGAAGTGCTTAGTGAATA+TGG | 0.285983 | 7.4:-83274741 | MS.gene49885:CDS |
| TGGGGTGTATTATTTGGTTT+TGG | 0.289261 | 7.4:-83274624 | MS.gene49885:CDS |
| CTGATTACAACTCAATCTTT+TGG | 0.293179 | 7.4:-83274845 | MS.gene49885:CDS |
| AACCTATATTTGAGATGGTT+TGG | 0.308691 | 7.4:-83275022 | MS.gene49885:CDS |
| CTTGTTGGACAAGCACTATT+TGG | 0.314421 | 7.4:-83275098 | MS.gene49885:CDS |
| TCAATGGCTCCTTCACTATT+AGG | 0.320776 | 7.4:+83274981 | None:intergenic |
| TATCAACTCACCAAACTCTT+AGG | 0.335572 | 7.4:-83275299 | MS.gene49885:CDS |
| GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 7.4:-83275213 | MS.gene49885:CDS |
| CTTTGTTCAACACAATTTGC+TGG | 0.349776 | 7.4:+83275998 | None:intergenic |
| TCAACTTGATCTAGAATTGC+AGG | 0.351560 | 7.4:+83274804 | None:intergenic |
| GGTTTCTCAATTTCTGGTAC+TGG | 0.354846 | 7.4:+83275041 | None:intergenic |
| TTGAAATTTCTCTTTGAGTT+CGG | 0.376078 | 7.4:+83275928 | None:intergenic |
| TGAATACATGGCCCCTTCAT+TGG | 0.380102 | 7.4:-83275471 | MS.gene49885:CDS |
| AAGTGAGTAATCTTTGACTT+TGG | 0.381814 | 7.4:+83275365 | None:intergenic |
| CACCTTCTTAAAGATGTTCC+TGG | 0.385004 | 7.4:-83274927 | MS.gene49885:CDS |
| AAAGATGGATTGAAGACAAC+TGG | 0.397171 | 7.4:-83274660 | MS.gene49885:CDS |
| GAGTTTGGTGAGTTGATAAT+CGG | 0.404976 | 7.4:+83275304 | None:intergenic |
| AGGTGGCACGGTGCTTCGTT+TGG | 0.407834 | 7.4:-83275225 | MS.gene49885:CDS |
| GGAGCTGCTGCACTCATTGT+TGG | 0.411529 | 7.4:-83275071 | MS.gene49885:CDS |
| GCCATGTATTCACAAACATT+AGG | 0.420204 | 7.4:+83275482 | None:intergenic |
| CCAATGGCCAAGATAGTTGC+AGG | 0.424125 | 7.4:+83276031 | None:intergenic |
| AACTGGAGAAGGACTTGAAT+GGG | 0.424547 | 7.4:-83274643 | MS.gene49885:CDS |
| CACCTGCAAAACACCCTTGT+TGG | 0.425276 | 7.4:+83275243 | None:intergenic |
| ACTCACTTGGACAGCCTTGT+TGG | 0.426712 | 7.4:-83275113 | MS.gene49885:CDS |
| GGTTGAGGCTTTCGAACCAT+TGG | 0.433432 | 7.4:-83274874 | MS.gene49885:CDS |
| GTCCAAACCATCTCAAATAT+AGG | 0.437103 | 7.4:+83275020 | None:intergenic |
| AGGGAAGGAGGCTGCGGTGA+AGG | 0.450562 | 7.4:-83275408 | MS.gene49885:CDS |
| TGGGCGAAGACCTAAGAGTT+TGG | 0.450749 | 7.4:+83275289 | None:intergenic |
| AGAAGGTCCTGCAACTATCT+TGG | 0.450898 | 7.4:-83276038 | MS.gene49885:CDS |
| GCGCAAAACAACCGTTTCAA+TGG | 0.451768 | 7.4:+83274590 | None:intergenic |
| ATCTAGAATTGCAGGTCCAC+CGG | 0.463612 | 7.4:+83274812 | None:intergenic |
| GCAAGACATGGTGGTGGTAG+AGG | 0.469468 | 7.4:-83275441 | MS.gene49885:CDS |
| CATGTATCTCCTCTTGATCA+TGG | 0.469562 | 7.4:+83275535 | None:intergenic |
| AAAGAACATTACTAAAGCAT+TGG | 0.475145 | 7.4:-83274895 | MS.gene49885:CDS |
| GTTGAGGCTTTCGAACCATT+GGG | 0.476179 | 7.4:-83274873 | MS.gene49885:CDS |
| TCTTGCCTTGCATCCAATGA+AGG | 0.479267 | 7.4:+83275458 | None:intergenic |
| TTCACGAAGGTGACCATCAA+TGG | 0.480525 | 7.4:+83274965 | None:intergenic |
| CTGTCCAAGTGAGTATCACT+AGG | 0.483602 | 7.4:+83275122 | None:intergenic |
| CGGTGAAGGCTATAAAAGAA+TGG | 0.483789 | 7.4:-83275394 | MS.gene49885:CDS |
| ACCTTCTTAAAGATGTTCCT+GGG | 0.484500 | 7.4:-83274926 | MS.gene49885:CDS |
| CTGAAATTCGTAAAGCTCAA+AGG | 0.484509 | 7.4:-83276063 | MS.gene49885:CDS |
| TCCTAATGTTTGTGAATACA+TGG | 0.486149 | 7.4:-83275483 | MS.gene49885:CDS |
| AATAGTGAAGGAGCCATTGA+TGG | 0.488582 | 7.4:-83274978 | MS.gene49885:CDS |
| CAGAACAAACAACCAACACA+CGG | 0.490301 | 7.4:+83275171 | None:intergenic |
| GTCACCGCTGTCACATTTCG+TGG | 0.493936 | 7.4:-83275146 | MS.gene49885:CDS |
| GTCTTCGCCCATATGTGAAA+AGG | 0.504788 | 7.4:-83275277 | MS.gene49885:CDS |
| TGAGAAACCTATATTTGAGA+TGG | 0.507221 | 7.4:-83275027 | MS.gene49885:CDS |
| GGTGAAGGCTATAAAAGAAT+GGG | 0.509368 | 7.4:-83275393 | MS.gene49885:CDS |
| ACCAGGACTTACCATTGAAA+CGG | 0.510913 | 7.4:-83274601 | MS.gene49885:CDS |
| TGAAATTCGTAAAGCTCAAA+GGG | 0.513791 | 7.4:-83276062 | MS.gene49885:CDS |
| GTGAGTTGATAATCGGCTCC+AGG | 0.515720 | 7.4:+83275311 | None:intergenic |
| CAACTGGAGAAGGACTTGAA+TGG | 0.524308 | 7.4:-83274644 | MS.gene49885:CDS |
| ACCGTTTCAATGGTAAGTCC+TGG | 0.536054 | 7.4:+83274600 | None:intergenic |
| GATGGTCACCTTCGTGAAGT+TGG | 0.538504 | 7.4:-83274960 | MS.gene49885:CDS |
| GTGGTAGAGGTACCTAGGCT+AGG | 0.542515 | 7.4:-83275428 | MS.gene49885:CDS |
| CATTACTAAAGCATTGGTTG+AGG | 0.542552 | 7.4:-83274889 | MS.gene49885:CDS |
| TCCCAGGAACATCTTTAAGA+AGG | 0.550142 | 7.4:+83274925 | None:intergenic |
| ATGTTCTTTGAAACAATCCC+AGG | 0.550779 | 7.4:+83274909 | None:intergenic |
| TGCTGGATTTGCAGTGCCAA+TGG | 0.555118 | 7.4:+83276015 | None:intergenic |
| CTTGCCTTGCATCCAATGAA+GGG | 0.559841 | 7.4:+83275459 | None:intergenic |
| TGGCCCCTTCATTGGATGCA+AGG | 0.561644 | 7.4:-83275463 | MS.gene49885:CDS |
| GGTACCTAGGCTAGGGAAGG+AGG | 0.562955 | 7.4:-83275420 | MS.gene49885:CDS |
| GGACAAGCACTATTTGGAGA+TGG | 0.563405 | 7.4:-83275092 | MS.gene49885:CDS |
| ACAAGTGGTGTAGACATGCC+TGG | 0.569592 | 7.4:-83275329 | MS.gene49885:CDS |
| TCTAGAATTGCAGGTCCACC+GGG | 0.570884 | 7.4:+83274813 | None:intergenic |
| GGATTGAAGACAACTGGAGA+AGG | 0.572446 | 7.4:-83274654 | MS.gene49885:CDS |
| CAAATAGTGCTTGTCCAACA+AGG | 0.572762 | 7.4:+83275099 | None:intergenic |
| CCTGCAACTATCTTGGCCAT+TGG | 0.574132 | 7.4:-83276031 | MS.gene49885:CDS |
| AGAACAAACAACCAACACAC+GGG | 0.575340 | 7.4:+83275172 | None:intergenic |
| TAGGCTAGGGAAGGAGGCTG+CGG | 0.583332 | 7.4:-83275414 | MS.gene49885:CDS |
| TGGTAGAGGTACCTAGGCTA+GGG | 0.584269 | 7.4:-83275427 | MS.gene49885:CDS |
| GTGATAAATCCATGATCAAG+AGG | 0.584564 | 7.4:-83275544 | MS.gene49885:CDS |
| TTAATCGTTTGCACTACAAG+TGG | 0.590788 | 7.4:-83275344 | MS.gene49885:CDS |
| TGTGTTGGTTGTTTGTTCTG+AGG | 0.598800 | 7.4:-83275168 | MS.gene49885:CDS |
| CGTAAAGCTCAAAGGGCAGA+AGG | 0.600732 | 7.4:-83276055 | MS.gene49885:CDS |
| ACAATTGCTCCTAATAGTGA+AGG | 0.604447 | 7.4:-83274990 | MS.gene49885:CDS |
| TGGCCCTAGTGATACTCACT+TGG | 0.605912 | 7.4:-83275126 | MS.gene49885:CDS |
| TGGTGGTGGTAGAGGTACCT+AGG | 0.608913 | 7.4:-83275433 | MS.gene49885:CDS |
| AGAGGTACCTAGGCTAGGGA+AGG | 0.617543 | 7.4:-83275423 | MS.gene49885:CDS |
| ATTGGATGCAAGGCAAGACA+TGG | 0.621464 | 7.4:-83275453 | MS.gene49885:CDS |
| TTGCCTTGCATCCAATGAAG+GGG | 0.637154 | 7.4:+83275460 | None:intergenic |
| CAACAAAGGTGCCCGTGTGT+TGG | 0.639808 | 7.4:-83275183 | MS.gene49885:CDS |
| TTGTAATCAGAAATTCCCAA+TGG | 0.649608 | 7.4:+83274858 | None:intergenic |
| GCAGCCTCCTTCCCTAGCCT+AGG | 0.651159 | 7.4:+83275416 | None:intergenic |
| GGTACATGATGTACCAACAA+GGG | 0.652620 | 7.4:-83275256 | MS.gene49885:CDS |
| TGTCCAAGTGAGTATCACTA+GGG | 0.674277 | 7.4:+83275123 | None:intergenic |
| AGGTACATGATGTACCAACA+AGG | 0.675679 | 7.4:-83275257 | MS.gene49885:CDS |
| TGCAAGGCAAGACATGGTGG+TGG | 0.676603 | 7.4:-83275447 | MS.gene49885:CDS |
| GATTTGGCTGAGAACAACAA+AGG | 0.683242 | 7.4:-83275197 | MS.gene49885:CDS |
| GTGAAGGCTATAAAAGAATG+GGG | 0.700932 | 7.4:-83275392 | MS.gene49885:CDS |
| ACTGGAGAAGGACTTGAATG+GGG | 0.717086 | 7.4:-83274642 | MS.gene49885:CDS |
| GGATGCAAGGCAAGACATGG+TGG | 0.736388 | 7.4:-83275450 | MS.gene49885:CDS |
| ATGTTAGTCCAACTTCACGA+AGG | 0.746572 | 7.4:+83274952 | None:intergenic |
| AGGGCCACGAAATGTGACAG+CGG | 0.772653 | 7.4:+83275142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATAAATATATTTGAAA+TGG | + | chr7.4:83274873-83274892 | None:intergenic | 10.0% |
| !! | TGTATTTAAAAATAATATAG+AGG | + | chr7.4:83274770-83274789 | None:intergenic | 10.0% |
| !! | AAGAACAATCAAATAATAAT+TGG | + | chr7.4:83275043-83275062 | None:intergenic | 15.0% |
| !! | AATTATTATTTGATTGTTCT+TGG | - | chr7.4:83275042-83275061 | MS.gene49885:CDS | 15.0% |
| !!! | GTAATTTTAAAGTAAAAATC+AGG | + | chr7.4:83274686-83274705 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCATTTTGTGAAT+TGG | - | chr7.4:83274835-83274854 | MS.gene49885:CDS | 15.0% |
| !! | ACAAATAATGTGTATCAATT+TGG | + | chr7.4:83274983-83275002 | None:intergenic | 20.0% |
| !! | AGAAAAAAATCAACTAAAGA+TGG | - | chr7.4:83275976-83275995 | MS.gene49885:CDS | 20.0% |
| !!! | CTTATTTACATTTATTTCTC+TGG | - | chr7.4:83274806-83274825 | MS.gene49885:CDS | 20.0% |
| !!! | TAATTTAAATATGGTGATGA+TGG | + | chr7.4:83274899-83274918 | None:intergenic | 20.0% |
| ! | AAAGAACATTACTAAAGCAT+TGG | - | chr7.4:83275756-83275775 | MS.gene49885:intron | 25.0% |
| ! | AATATAGGTTTCTCAATTTC+TGG | + | chr7.4:83275619-83275638 | None:intergenic | 25.0% |
| ! | ATAATGTGTATCAATTTGGT+AGG | + | chr7.4:83274979-83274998 | None:intergenic | 25.0% |
| ! | TCATTTCTTATAACTACTTC+AGG | - | chr7.4:83275085-83275104 | MS.gene49885:CDS | 25.0% |
| !! | TTGAAATTTCTCTTTGAGTT+CGG | + | chr7.4:83274726-83274745 | None:intergenic | 25.0% |
| !! | TTTTGTGAATTGGACTAATT+AGG | - | chr7.4:83274845-83274864 | MS.gene49885:CDS | 25.0% |
| GGCAATATTAATATCATGAG+TGG | + | chr7.4:83274958-83274977 | None:intergenic | 30.0% | |
| TCCTAATGTTTGTGAATACA+TGG | - | chr7.4:83275168-83275187 | MS.gene49885:CDS | 30.0% | |
| TGAAATTCGTAAAGCTCAAA+GGG | - | chr7.4:83274589-83274608 | MS.gene49885:CDS | 30.0% | |
| TGAGAAACCTATATTTGAGA+TGG | - | chr7.4:83275624-83275643 | MS.gene49885:intron | 30.0% | |
| TTGTAATCAGAAATTCCCAA+TGG | + | chr7.4:83275796-83275815 | None:intergenic | 30.0% | |
| ! | AACCTATATTTGAGATGGTT+TGG | - | chr7.4:83275629-83275648 | MS.gene49885:intron | 30.0% |
| ! | AAGTGAGTAATCTTTGACTT+TGG | + | chr7.4:83275289-83275308 | None:intergenic | 30.0% |
| ! | ATCATGTACCTTTTCACATA+TGG | + | chr7.4:83275385-83275404 | None:intergenic | 30.0% |
| ! | CTGATTACAACTCAATCTTT+TGG | - | chr7.4:83275806-83275825 | MS.gene49885:intron | 30.0% |
| ! | TCATGTACCTTTTCACATAT+GGG | + | chr7.4:83275384-83275403 | None:intergenic | 30.0% |
| !!! | TGCATGTGTTTTGTTTATCT+TGG | - | chr7.4:83275945-83275964 | MS.gene49885:CDS | 30.0% |
| ACAATTGCTCCTAATAGTGA+AGG | - | chr7.4:83275661-83275680 | MS.gene49885:intron | 35.0% | |
| ACCTTCTTAAAGATGTTCCT+GGG | - | chr7.4:83275725-83275744 | MS.gene49885:intron | 35.0% | |
| CTGAAATTCGTAAAGCTCAA+AGG | - | chr7.4:83274588-83274607 | MS.gene49885:CDS | 35.0% | |
| CTTGAATGGGGTGTATTATT+TGG | - | chr7.4:83276021-83276040 | MS.gene49885:CDS | 35.0% | |
| CTTTGTTCAACACAATTTGC+TGG | + | chr7.4:83274656-83274675 | None:intergenic | 35.0% | |
| GCCATGTATTCACAAACATT+AGG | + | chr7.4:83275172-83275191 | None:intergenic | 35.0% | |
| GGTGAAGGCTATAAAAGAAT+GGG | - | chr7.4:83275258-83275277 | MS.gene49885:CDS | 35.0% | |
| GTCCAAACCATCTCAAATAT+AGG | + | chr7.4:83275634-83275653 | None:intergenic | 35.0% | |
| GTGAAGGCTATAAAAGAATG+GGG | - | chr7.4:83275259-83275278 | MS.gene49885:CDS | 35.0% | |
| GTGATAAATCCATGATCAAG+AGG | - | chr7.4:83275107-83275126 | MS.gene49885:CDS | 35.0% | |
| TATCAACTCACCAAACTCTT+AGG | - | chr7.4:83275352-83275371 | MS.gene49885:CDS | 35.0% | |
| TTAATCGTTTGCACTACAAG+TGG | - | chr7.4:83275307-83275326 | MS.gene49885:CDS | 35.0% | |
| ! | CTAGTTGCATTCATCTTTTC+AGG | + | chr7.4:83275892-83275911 | None:intergenic | 35.0% |
| ! | TCAACTTGATCTAGAATTGC+AGG | + | chr7.4:83275850-83275869 | None:intergenic | 35.0% |
| !! | AAAGATGGATTGAAGACAAC+TGG | - | chr7.4:83275991-83276010 | MS.gene49885:CDS | 35.0% |
| !! | AGAGAAGTGCTTAGTGAATA+TGG | - | chr7.4:83275910-83275929 | MS.gene49885:intron | 35.0% |
| !! | ATGTTCTTTGAAACAATCCC+AGG | + | chr7.4:83275745-83275764 | None:intergenic | 35.0% |
| !! | ATTCATCTTTTCAGGCTTCA+AGG | + | chr7.4:83275884-83275903 | None:intergenic | 35.0% |
| !! | CATTACTAAAGCATTGGTTG+AGG | - | chr7.4:83275762-83275781 | MS.gene49885:intron | 35.0% |
| !! | GAGTTTGGTGAGTTGATAAT+CGG | + | chr7.4:83275350-83275369 | None:intergenic | 35.0% |
| !! | TGGGGTGTATTATTTGGTTT+TGG | - | chr7.4:83276027-83276046 | MS.gene49885:CDS | 35.0% |
| !!! | GTATTATTTGGTTTTGGACC+AGG | - | chr7.4:83276033-83276052 | MS.gene49885:CDS | 35.0% |
| AACTGGAGAAGGACTTGAAT+GGG | - | chr7.4:83276008-83276027 | MS.gene49885:CDS | 40.0% | |
| AATAGTGAAGGAGCCATTGA+TGG | - | chr7.4:83275673-83275692 | MS.gene49885:intron | 40.0% | |
| ACCAGGACTTACCATTGAAA+CGG | - | chr7.4:83276050-83276069 | MS.gene49885:CDS | 40.0% | |
| AGAACAAACAACCAACACAC+GGG | + | chr7.4:83275482-83275501 | None:intergenic | 40.0% | |
| AGGTACATGATGTACCAACA+AGG | - | chr7.4:83275394-83275413 | MS.gene49885:CDS | 40.0% | |
| ATGTTAGTCCAACTTCACGA+AGG | + | chr7.4:83275702-83275721 | None:intergenic | 40.0% | |
| CAAATAGTGCTTGTCCAACA+AGG | + | chr7.4:83275555-83275574 | None:intergenic | 40.0% | |
| CACCTTCTTAAAGATGTTCC+TGG | - | chr7.4:83275724-83275743 | MS.gene49885:intron | 40.0% | |
| CAGAACAAACAACCAACACA+CGG | + | chr7.4:83275483-83275502 | None:intergenic | 40.0% | |
| CATGTATCTCCTCTTGATCA+TGG | + | chr7.4:83275119-83275138 | None:intergenic | 40.0% | |
| CGGTGAAGGCTATAAAAGAA+TGG | - | chr7.4:83275257-83275276 | MS.gene49885:CDS | 40.0% | |
| CTTGTTGGACAAGCACTATT+TGG | - | chr7.4:83275553-83275572 | MS.gene49885:intron | 40.0% | |
| GATTTGGCTGAGAACAACAA+AGG | - | chr7.4:83275454-83275473 | MS.gene49885:CDS | 40.0% | |
| GCTTCGTTTGGCTAAAGATT+TGG | - | chr7.4:83275438-83275457 | MS.gene49885:CDS | 40.0% | |
| GGTACATGATGTACCAACAA+GGG | - | chr7.4:83275395-83275414 | MS.gene49885:CDS | 40.0% | |
| TCAATGGCTCCTTCACTATT+AGG | + | chr7.4:83275673-83275692 | None:intergenic | 40.0% | |
| TGTCCAAGTGAGTATCACTA+GGG | + | chr7.4:83275531-83275550 | None:intergenic | 40.0% | |
| ! | ATCTTTTGGATTGCACATCC+CGG | - | chr7.4:83275820-83275839 | MS.gene49885:intron | 40.0% |
| ! | TCCCAGGAACATCTTTAAGA+AGG | + | chr7.4:83275729-83275748 | None:intergenic | 40.0% |
| !! | GGTTTCTCAATTTCTGGTAC+TGG | + | chr7.4:83275613-83275632 | None:intergenic | 40.0% |
| !! | TGTGTTGGTTGTTTGTTCTG+AGG | - | chr7.4:83275483-83275502 | MS.gene49885:CDS | 40.0% |
| ACCGTTTCAATGGTAAGTCC+TGG | + | chr7.4:83276054-83276073 | None:intergenic | 45.0% | |
| ACTGGAGAAGGACTTGAATG+GGG | - | chr7.4:83276009-83276028 | MS.gene49885:CDS | 45.0% | |
| AGAAGGTCCTGCAACTATCT+TGG | - | chr7.4:83274613-83274632 | MS.gene49885:CDS | 45.0% | |
| ATTGGATGCAAGGCAAGACA+TGG | - | chr7.4:83275198-83275217 | MS.gene49885:CDS | 45.0% | |
| CAACTGGAGAAGGACTTGAA+TGG | - | chr7.4:83276007-83276026 | MS.gene49885:CDS | 45.0% | |
| CTGTCCAAGTGAGTATCACT+AGG | + | chr7.4:83275532-83275551 | None:intergenic | 45.0% | |
| CTTGCCTTGCATCCAATGAA+GGG | + | chr7.4:83275195-83275214 | None:intergenic | 45.0% | |
| GCGCAAAACAACCGTTTCAA+TGG | + | chr7.4:83276064-83276083 | None:intergenic | 45.0% | |
| GGACAAGCACTATTTGGAGA+TGG | - | chr7.4:83275559-83275578 | MS.gene49885:intron | 45.0% | |
| GGATTGAAGACAACTGGAGA+AGG | - | chr7.4:83275997-83276016 | MS.gene49885:CDS | 45.0% | |
| GTCTTCGCCCATATGTGAAA+AGG | - | chr7.4:83275374-83275393 | MS.gene49885:CDS | 45.0% | |
| GTTGAGGCTTTCGAACCATT+GGG | - | chr7.4:83275778-83275797 | MS.gene49885:intron | 45.0% | |
| TCTTGCCTTGCATCCAATGA+AGG | + | chr7.4:83275196-83275215 | None:intergenic | 45.0% | |
| TGAATACATGGCCCCTTCAT+TGG | - | chr7.4:83275180-83275199 | MS.gene49885:CDS | 45.0% | |
| TTCACGAAGGTGACCATCAA+TGG | + | chr7.4:83275689-83275708 | None:intergenic | 45.0% | |
| TTGCCTTGCATCCAATGAAG+GGG | + | chr7.4:83275194-83275213 | None:intergenic | 45.0% | |
| ! | ATCTAGAATTGCAGGTCCAC+CGG | + | chr7.4:83275842-83275861 | None:intergenic | 45.0% |
| !!! | TACCAACAAGGGTGTTTTGC+AGG | - | chr7.4:83275406-83275425 | MS.gene49885:CDS | 45.0% |
| !! | TATTTAAATTACTTAAAATA+CGG | - | chr7.4:83274908-83274927 | MS.gene49885:CDS | 5.0% |
| !!! | TATTTTAAGTAATTTAAATA+TGG | + | chr7.4:83274908-83274927 | None:intergenic | 5.0% |
| ACAAGTGGTGTAGACATGCC+TGG | - | chr7.4:83275322-83275341 | MS.gene49885:CDS | 50.0% | |
| CACCTGCAAAACACCCTTGT+TGG | + | chr7.4:83275411-83275430 | None:intergenic | 50.0% | |
| CCAATGGCCAAGATAGTTGC+AGG | + | chr7.4:83274623-83274642 | None:intergenic | 50.0% | |
| CCTGCAACTATCTTGGCCAT+TGG | - | chr7.4:83274620-83274639 | MS.gene49885:CDS | 50.0% | |
| CGTAAAGCTCAAAGGGCAGA+AGG | - | chr7.4:83274596-83274615 | MS.gene49885:CDS | 50.0% | |
| GATGGTCACCTTCGTGAAGT+TGG | - | chr7.4:83275691-83275710 | MS.gene49885:intron | 50.0% | |
| GGTTGAGGCTTTCGAACCAT+TGG | - | chr7.4:83275777-83275796 | MS.gene49885:intron | 50.0% | |
| TGCTGGATTTGCAGTGCCAA+TGG | + | chr7.4:83274639-83274658 | None:intergenic | 50.0% | |
| TGGCCCTAGTGATACTCACT+TGG | - | chr7.4:83275525-83275544 | MS.gene49885:CDS | 50.0% | |
| TGGGCGAAGACCTAAGAGTT+TGG | + | chr7.4:83275365-83275384 | None:intergenic | 50.0% | |
| ! | ACTCACTTGGACAGCCTTGT+TGG | - | chr7.4:83275538-83275557 | MS.gene49885:CDS | 50.0% |
| ! | TCTAGAATTGCAGGTCCACC+GGG | + | chr7.4:83275841-83275860 | None:intergenic | 50.0% |
| ! | TTTTGGATTGCACATCCCGG+TGG | - | chr7.4:83275823-83275842 | MS.gene49885:intron | 50.0% |
| !! | GTGAGTTGATAATCGGCTCC+AGG | + | chr7.4:83275343-83275362 | None:intergenic | 50.0% |
| !! | TGGTAGAGGTACCTAGGCTA+GGG | - | chr7.4:83275224-83275243 | MS.gene49885:CDS | 50.0% |
| !!! | CAACAAGGGTGTTTTGCAGG+TGG | - | chr7.4:83275409-83275428 | MS.gene49885:CDS | 50.0% |
| AGGGCCACGAAATGTGACAG+CGG | + | chr7.4:83275512-83275531 | None:intergenic | 55.0% | |
| GGAGCTGCTGCACTCATTGT+TGG | - | chr7.4:83275580-83275599 | MS.gene49885:intron | 55.0% | |
| GGATGCAAGGCAAGACATGG+TGG | - | chr7.4:83275201-83275220 | MS.gene49885:CDS | 55.0% | |
| GTCACCGCTGTCACATTTCG+TGG | - | chr7.4:83275505-83275524 | MS.gene49885:CDS | 55.0% | |
| TGCAAGGCAAGACATGGTGG+TGG | - | chr7.4:83275204-83275223 | MS.gene49885:CDS | 55.0% | |
| TGGCCCCTTCATTGGATGCA+AGG | - | chr7.4:83275188-83275207 | MS.gene49885:CDS | 55.0% | |
| !! | AACGGTTGTTTTGCGCAGCG+TGG | - | chr7.4:83276068-83276087 | MS.gene49885:CDS | 55.0% |
| !! | AGAGGTACCTAGGCTAGGGA+AGG | - | chr7.4:83275228-83275247 | MS.gene49885:CDS | 55.0% |
| !! | AGGGTGTTTTGCAGGTGGCA+CGG | - | chr7.4:83275414-83275433 | MS.gene49885:CDS | 55.0% |
| !! | CAACAAAGGTGCCCGTGTGT+TGG | - | chr7.4:83275468-83275487 | MS.gene49885:CDS | 55.0% |
| !! | GCAAGACATGGTGGTGGTAG+AGG | - | chr7.4:83275210-83275229 | MS.gene49885:CDS | 55.0% |
| !! | GTGGTAGAGGTACCTAGGCT+AGG | - | chr7.4:83275223-83275242 | MS.gene49885:CDS | 55.0% |
| !! | TGGTGGTGGTAGAGGTACCT+AGG | - | chr7.4:83275218-83275237 | MS.gene49885:CDS | 55.0% |
| AGGTGGCACGGTGCTTCGTT+TGG | - | chr7.4:83275426-83275445 | MS.gene49885:CDS | 60.0% | |
| GGTACCTAGGCTAGGGAAGG+AGG | - | chr7.4:83275231-83275250 | MS.gene49885:CDS | 60.0% | |
| TAGGCTAGGGAAGGAGGCTG+CGG | - | chr7.4:83275237-83275256 | MS.gene49885:CDS | 60.0% | |
| AGGGAAGGAGGCTGCGGTGA+AGG | - | chr7.4:83275243-83275262 | MS.gene49885:CDS | 65.0% | |
| GCAGCCTCCTTCCCTAGCCT+AGG | + | chr7.4:83275238-83275257 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 83274575 | 83276098 | 83274575 | ID=MS.gene49885 |
| chr7.4 | mRNA | 83274575 | 83276098 | 83274575 | ID=MS.gene49885.t1;Parent=MS.gene49885 |
| chr7.4 | exon | 83275921 | 83276098 | 83275921 | ID=MS.gene49885.t1.exon1;Parent=MS.gene49885.t1 |
| chr7.4 | CDS | 83275921 | 83276098 | 83275921 | ID=cds.MS.gene49885.t1;Parent=MS.gene49885.t1 |
| chr7.4 | exon | 83274575 | 83275566 | 83274575 | ID=MS.gene49885.t1.exon2;Parent=MS.gene49885.t1 |
| chr7.4 | CDS | 83274575 | 83275566 | 83274575 | ID=cds.MS.gene49885.t1;Parent=MS.gene49885.t1 |
| Gene Sequence |
| Protein sequence |
