Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52624.t1 | RHN80717.1 | 93.3 | 511 | 34 | 0 | 1 | 511 | 1 | 511 | 3.20E-272 | 947.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52624.t1 | O13633 | 28.8 | 208 | 98 | 4 | 1 | 159 | 1 | 207 | 2.4e-10 | 68.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52624.t1 | A0A396K2H3 | 93.3 | 511 | 34 | 0 | 1 | 511 | 1 | 511 | 2.3e-272 | 947.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene52624 | 0.844048 | 9.62E-59 | -1.69E-46 |
| MS.gene050297 | MS.gene52624 | 0.821218 | 4.54E-53 | -1.69E-46 |
| MS.gene051629 | MS.gene52624 | 0.811295 | 7.52E-51 | -1.69E-46 |
| MS.gene051816 | MS.gene52624 | 0.824922 | 6.21E-54 | -1.69E-46 |
| MS.gene051914 | MS.gene52624 | 0.817747 | 2.81E-52 | -1.69E-46 |
| MS.gene051955 | MS.gene52624 | 0.871633 | 5.89E-67 | -1.69E-46 |
| MS.gene052308 | MS.gene52624 | 0.854577 | 1.12E-61 | -1.69E-46 |
| MS.gene052367 | MS.gene52624 | 0.873546 | 1.35E-67 | -1.69E-46 |
| MS.gene053173 | MS.gene52624 | 0.846489 | 2.10E-59 | -1.69E-46 |
| MS.gene053348 | MS.gene52624 | 0.828627 | 8.09E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene52624 | 0.834831 | 2.39E-56 | -1.69E-46 |
| MS.gene053417 | MS.gene52624 | 0.834598 | 2.73E-56 | -1.69E-46 |
| MS.gene054551 | MS.gene52624 | 0.852806 | 3.63E-61 | -1.69E-46 |
| MS.gene054552 | MS.gene52624 | 0.84966 | 2.80E-60 | -1.69E-46 |
| MS.gene054593 | MS.gene52624 | 0.852212 | 5.35E-61 | -1.69E-46 |
| MS.gene054662 | MS.gene52624 | 0.805475 | 1.31E-49 | -1.69E-46 |
| MS.gene054885 | MS.gene52624 | 0.815318 | 9.83E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene52624 | 0.872515 | 3.00E-67 | -1.69E-46 |
| MS.gene055578 | MS.gene52624 | 0.877308 | 6.97E-69 | -1.69E-46 |
| MS.gene055957 | MS.gene52624 | 0.876619 | 1.21E-68 | -1.69E-46 |
| MS.gene056041 | MS.gene52624 | 0.889733 | 1.86E-73 | -1.69E-46 |
| MS.gene056042 | MS.gene52624 | 0.82295 | 1.80E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene52624 | 0.851122 | 1.09E-60 | -1.69E-46 |
| MS.gene056526 | MS.gene52624 | 0.819837 | 9.42E-53 | -1.69E-46 |
| MS.gene05652 | MS.gene52624 | 0.811201 | 7.88E-51 | -1.69E-46 |
| MS.gene057458 | MS.gene52624 | 0.871328 | 7.43E-67 | -1.69E-46 |
| MS.gene058013 | MS.gene52624 | 0.808362 | 3.21E-50 | -1.69E-46 |
| MS.gene058128 | MS.gene52624 | 0.83157 | 1.55E-55 | -1.69E-46 |
| MS.gene058196 | MS.gene52624 | 0.800223 | 1.59E-48 | -1.69E-46 |
| MS.gene058818 | MS.gene52624 | 0.80146 | 8.91E-49 | -1.69E-46 |
| MS.gene058827 | MS.gene52624 | 0.805041 | 1.62E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene52624 | 0.858238 | 9.45E-63 | -1.69E-46 |
| MS.gene059300 | MS.gene52624 | 0.812008 | 5.26E-51 | -1.69E-46 |
| MS.gene059553 | MS.gene52624 | 0.83186 | 1.31E-55 | -1.69E-46 |
| MS.gene060473 | MS.gene52624 | 0.869288 | 3.46E-66 | -1.69E-46 |
| MS.gene060565 | MS.gene52624 | 0.86054 | 1.92E-63 | -1.69E-46 |
| MS.gene06057 | MS.gene52624 | 0.806041 | 9.97E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene52624 | 0.85994 | 2.92E-63 | -1.69E-46 |
| MS.gene061099 | MS.gene52624 | 0.856525 | 3.03E-62 | -1.69E-46 |
| MS.gene061260 | MS.gene52624 | 0.887368 | 1.52E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52624.t1 | MTR_1g081970 | 97.065 | 511 | 15 | 0 | 1 | 511 | 1 | 511 | 0.0 | 1028 |
| MS.gene52624.t1 | MTR_1g060440 | 68.727 | 534 | 121 | 6 | 1 | 512 | 1 | 510 | 0.0 | 709 |
| MS.gene52624.t1 | MTR_7g114150 | 43.672 | 561 | 250 | 9 | 1 | 510 | 1 | 546 | 6.16e-133 | 412 |
| MS.gene52624.t1 | MTR_1g081960 | 66.016 | 256 | 71 | 4 | 1 | 252 | 51 | 294 | 1.94e-104 | 315 |
| MS.gene52624.t1 | MTR_2g020420 | 37.567 | 559 | 277 | 19 | 1 | 511 | 1 | 535 | 3.41e-89 | 293 |
| MS.gene52624.t1 | MTR_4g118660 | 35.179 | 560 | 273 | 12 | 1 | 510 | 42 | 561 | 4.25e-89 | 294 |
| MS.gene52624.t1 | MTR_4g118660 | 33.898 | 118 | 70 | 3 | 397 | 506 | 739 | 856 | 9.85e-12 | 68.2 |
| MS.gene52624.t1 | MTR_1g051765 | 55.102 | 245 | 58 | 2 | 267 | 511 | 40 | 232 | 2.32e-82 | 261 |
| MS.gene52624.t1 | MTR_8g011080 | 32.567 | 522 | 250 | 14 | 1 | 510 | 54 | 485 | 4.13e-63 | 219 |
| MS.gene52624.t1 | MTR_6g059870 | 29.696 | 559 | 324 | 18 | 1 | 506 | 1 | 543 | 2.03e-58 | 207 |
| MS.gene52624.t1 | MTR_2g020420 | 44.681 | 235 | 118 | 4 | 1 | 224 | 1 | 234 | 4.13e-55 | 199 |
| MS.gene52624.t1 | MTR_3g091040 | 42.609 | 230 | 121 | 6 | 1 | 222 | 1 | 227 | 5.99e-49 | 180 |
| MS.gene52624.t1 | MTR_3g091040 | 37.600 | 125 | 72 | 3 | 383 | 501 | 422 | 546 | 2.88e-18 | 89.0 |
| MS.gene52624.t1 | MTR_5g097170 | 36.239 | 218 | 110 | 6 | 1 | 218 | 1 | 189 | 1.89e-30 | 126 |
| MS.gene52624.t1 | MTR_5g097170 | 39.785 | 93 | 53 | 2 | 416 | 505 | 450 | 542 | 2.71e-17 | 85.5 |
| MS.gene52624.t1 | MTR_1g082220 | 84.848 | 66 | 10 | 0 | 1 | 66 | 1 | 66 | 5.50e-30 | 116 |
| MS.gene52624.t1 | MTR_1g082220 | 69.492 | 59 | 18 | 0 | 257 | 315 | 90 | 148 | 8.49e-20 | 87.8 |
| MS.gene52624.t1 | MTR_3g099170 | 24.045 | 628 | 344 | 19 | 1 | 503 | 15 | 634 | 2.54e-29 | 123 |
| MS.gene52624.t1 | MTR_3g082810 | 32.895 | 228 | 120 | 5 | 1 | 226 | 1 | 197 | 2.42e-28 | 119 |
| MS.gene52624.t1 | MTR_3g082810 | 36.220 | 127 | 74 | 4 | 386 | 505 | 407 | 533 | 2.37e-19 | 92.0 |
| MS.gene52624.t1 | MTR_1g051815 | 69.014 | 71 | 21 | 1 | 317 | 387 | 23 | 92 | 2.42e-21 | 89.0 |
| MS.gene52624.t1 | MTR_3g100330 | 29.520 | 271 | 134 | 9 | 1 | 260 | 1 | 225 | 2.83e-20 | 90.1 |
| MS.gene52624.t1 | MTR_5g066100 | 29.032 | 217 | 147 | 4 | 1 | 214 | 2 | 214 | 1.36e-18 | 87.8 |
| MS.gene52624.t1 | MTR_2g436560 | 32.530 | 166 | 73 | 2 | 1 | 128 | 1 | 165 | 5.24e-14 | 73.9 |
| MS.gene52624.t1 | MTR_2g435450 | 42.697 | 89 | 45 | 2 | 47 | 129 | 13 | 101 | 3.51e-13 | 70.5 |
| MS.gene52624.t1 | MTR_4g120450 | 49.231 | 65 | 33 | 0 | 66 | 130 | 36 | 100 | 3.49e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52624.t1 | AT5G18750 | 35.496 | 524 | 274 | 15 | 4 | 506 | 3 | 483 | 4.13e-68 | 235 |
| MS.gene52624.t1 | AT5G18750 | 32.039 | 103 | 64 | 2 | 409 | 509 | 649 | 747 | 2.88e-12 | 70.1 |
| MS.gene52624.t1 | AT3G04980 | 31.579 | 608 | 285 | 18 | 1 | 510 | 1 | 575 | 3.34e-66 | 232 |
| MS.gene52624.t1 | AT3G04980 | 31.579 | 608 | 285 | 18 | 1 | 510 | 1 | 575 | 3.34e-66 | 232 |
| MS.gene52624.t1 | AT3G04980 | 30.678 | 590 | 278 | 18 | 19 | 510 | 1 | 557 | 1.18e-57 | 207 |
| MS.gene52624.t1 | AT5G27240 | 31.346 | 587 | 294 | 20 | 1 | 510 | 1 | 555 | 1.50e-57 | 207 |
| MS.gene52624.t1 | AT5G27240 | 31.346 | 587 | 294 | 20 | 1 | 510 | 1 | 555 | 1.50e-57 | 207 |
| MS.gene52624.t1 | AT5G27240 | 31.346 | 587 | 294 | 20 | 1 | 510 | 1 | 555 | 1.50e-57 | 207 |
| MS.gene52624.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.04e-48 | 179 |
| MS.gene52624.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.04e-48 | 179 |
| MS.gene52624.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.04e-48 | 179 |
| MS.gene52624.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.04e-48 | 179 |
| MS.gene52624.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 6.57e-44 | 163 |
| MS.gene52624.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 4.36e-43 | 163 |
| MS.gene52624.t1 | AT5G53150 | 37.879 | 132 | 73 | 4 | 380 | 508 | 413 | 538 | 8.02e-18 | 87.4 |
| MS.gene52624.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 4.36e-43 | 163 |
| MS.gene52624.t1 | AT5G53150 | 37.879 | 132 | 73 | 4 | 380 | 508 | 413 | 538 | 8.02e-18 | 87.4 |
| MS.gene52624.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 4.41e-43 | 164 |
| MS.gene52624.t1 | AT5G53150 | 37.879 | 132 | 73 | 4 | 380 | 508 | 442 | 567 | 6.93e-18 | 87.8 |
| MS.gene52624.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 4.41e-43 | 164 |
| MS.gene52624.t1 | AT5G53150 | 37.879 | 132 | 73 | 4 | 380 | 508 | 442 | 567 | 6.93e-18 | 87.8 |
| MS.gene52624.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 4.41e-43 | 164 |
| MS.gene52624.t1 | AT5G53150 | 37.879 | 132 | 73 | 4 | 380 | 508 | 442 | 567 | 6.93e-18 | 87.8 |
| MS.gene52624.t1 | AT2G25560 | 35.593 | 236 | 135 | 3 | 1 | 222 | 1 | 233 | 3.90e-41 | 157 |
| MS.gene52624.t1 | AT2G25560 | 36.364 | 88 | 49 | 3 | 420 | 502 | 423 | 508 | 1.27e-11 | 67.8 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.04e-38 | 147 |
| MS.gene52624.t1 | AT2G05230 | 32.937 | 252 | 156 | 5 | 1 | 251 | 1 | 240 | 3.50e-35 | 140 |
| MS.gene52624.t1 | AT2G05230 | 35.714 | 112 | 55 | 3 | 421 | 515 | 473 | 584 | 5.76e-15 | 78.2 |
| MS.gene52624.t1 | AT2G05250 | 32.937 | 252 | 156 | 5 | 1 | 251 | 1 | 240 | 3.50e-35 | 140 |
| MS.gene52624.t1 | AT2G05250 | 35.714 | 112 | 55 | 3 | 421 | 515 | 473 | 584 | 5.76e-15 | 78.2 |
| MS.gene52624.t1 | AT4G19570 | 34.118 | 255 | 127 | 6 | 1 | 220 | 1 | 249 | 3.22e-33 | 133 |
| MS.gene52624.t1 | AT4G19590 | 46.212 | 132 | 71 | 0 | 1 | 132 | 1 | 132 | 1.18e-31 | 125 |
| MS.gene52624.t1 | AT5G37750 | 37.799 | 209 | 92 | 6 | 10 | 217 | 22 | 193 | 1.46e-31 | 122 |
| MS.gene52624.t1 | AT4G19590 | 45.522 | 134 | 73 | 0 | 1 | 134 | 1 | 134 | 1.68e-31 | 125 |
| MS.gene52624.t1 | AT4G19580 | 34.322 | 236 | 111 | 8 | 1 | 193 | 1 | 235 | 8.94e-29 | 116 |
| MS.gene52624.t1 | AT5G37440 | 36.239 | 218 | 102 | 6 | 1 | 217 | 16 | 197 | 1.45e-28 | 115 |
| MS.gene52624.t1 | AT4G19590 | 45.378 | 119 | 65 | 0 | 14 | 132 | 3 | 121 | 9.11e-26 | 108 |
| MS.gene52624.t1 | AT2G35540 | 31.100 | 209 | 111 | 3 | 7 | 215 | 12 | 187 | 1.30e-22 | 102 |
| MS.gene52624.t1 | AT5G18740 | 47.059 | 85 | 44 | 1 | 428 | 511 | 174 | 258 | 4.19e-19 | 90.1 |
| MS.gene52624.t1 | AT5G18730 | 45.055 | 91 | 48 | 2 | 423 | 511 | 39 | 129 | 3.58e-18 | 87.8 |
| MS.gene52624.t1 | AT2G01710 | 28.384 | 229 | 130 | 6 | 4 | 226 | 7 | 207 | 1.06e-16 | 81.6 |
| MS.gene52624.t1 | AT5G35753 | 35.714 | 112 | 55 | 3 | 421 | 515 | 196 | 307 | 3.25e-16 | 81.3 |
| MS.gene52624.t1 | AT2G01710 | 28.384 | 229 | 130 | 6 | 4 | 226 | 51 | 251 | 3.29e-16 | 80.5 |
| MS.gene52624.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.64e-16 | 81.3 |
| MS.gene52624.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.64e-16 | 81.3 |
| MS.gene52624.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.64e-16 | 81.3 |
| MS.gene52624.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.64e-16 | 81.3 |
| MS.gene52624.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.64e-16 | 81.3 |
| MS.gene52624.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.64e-16 | 81.3 |
| MS.gene52624.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.74e-16 | 81.3 |
| MS.gene52624.t1 | AT5G09540 | 25.909 | 220 | 138 | 4 | 2 | 218 | 8 | 205 | 1.84e-13 | 71.2 |
| MS.gene52624.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 325 | 402 | 3.01e-13 | 72.8 |
| MS.gene52624.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 276 | 353 | 3.05e-13 | 72.4 |
| MS.gene52624.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 377 | 454 | 4.29e-13 | 72.4 |
| MS.gene52624.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 328 | 405 | 5.04e-13 | 72.0 |
| MS.gene52624.t1 | AT3G06778 | 35.577 | 104 | 63 | 2 | 44 | 143 | 15 | 118 | 2.37e-12 | 67.0 |
| MS.gene52624.t1 | AT4G39960 | 45.349 | 86 | 47 | 0 | 63 | 148 | 81 | 166 | 1.63e-11 | 67.0 |
| MS.gene52624.t1 | AT4G39960 | 45.349 | 86 | 47 | 0 | 63 | 148 | 81 | 166 | 1.63e-11 | 67.0 |
| MS.gene52624.t1 | AT5G37760 | 31.788 | 151 | 73 | 2 | 13 | 163 | 79 | 199 | 3.09e-11 | 63.5 |
Find 110 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTGTTGACTTTGGTTC+TGG | 0.183753 | 1.1:-60822137 | None:intergenic |
| GCCTGCGTTGGAACCTTTAT+CGG | 0.260641 | 1.1:-60821897 | None:intergenic |
| TTCTCAAAATTATTGAAATC+TGG | 0.288044 | 1.1:-60822473 | None:intergenic |
| ACCTCATCCCATCCCTCTAA+TGG | 0.305579 | 1.1:+60821621 | MS.gene52624:CDS |
| ATATATGTAGAACTGGAATT+TGG | 0.311647 | 1.1:-60821775 | None:intergenic |
| AAAGCAACACGTTTCATATA+AGG | 0.319773 | 1.1:+60822256 | MS.gene52624:CDS |
| CTACATATATGTTATAAATA+AGG | 0.331085 | 1.1:+60821788 | MS.gene52624:CDS |
| TGAACCTCGCCATCTTCATC+TGG | 0.334839 | 1.1:-60822635 | None:intergenic |
| CTTTCAAGCTGCAGATTACT+TGG | 0.337948 | 1.1:+60822600 | MS.gene52624:CDS |
| AACCTGCACAGCCGACATTC+TGG | 0.340367 | 1.1:+60821730 | MS.gene52624:CDS |
| TTCCCATCATTTGTACAGTT+TGG | 0.341473 | 1.1:+60821870 | MS.gene52624:CDS |
| AACATCAGCATACAGCCTTT+TGG | 0.350504 | 1.1:-60821298 | None:intergenic |
| CAAGCTGTCTAAGTCTGATA+TGG | 0.352317 | 1.1:+60821374 | MS.gene52624:CDS |
| GAAGCTGCTTTCAAGTTGAT+TGG | 0.361899 | 1.1:+60821510 | MS.gene52624:CDS |
| TTTATCACTCAACACCCTAT+TGG | 0.363699 | 1.1:-60821538 | None:intergenic |
| TTGACAAGAGCATAAAATCT+TGG | 0.369389 | 1.1:-60822563 | None:intergenic |
| TGCTGCAGGTTTCCCATTAG+AGG | 0.373658 | 1.1:-60821634 | None:intergenic |
| CAGCATCATGGTCATCTTCA+TGG | 0.379538 | 1.1:-60822283 | None:intergenic |
| AAGCTGCTTTCAAGTTGATT+GGG | 0.381170 | 1.1:+60821511 | MS.gene52624:CDS |
| TTTCTTTATGATTGCTTCCT+CGG | 0.386358 | 1.1:-60821430 | None:intergenic |
| ACATAAAGATGAGAAGATTA+AGG | 0.390025 | 1.1:+60822040 | MS.gene52624:CDS |
| AGTTGATTGGGGAAGCCAAT+AGG | 0.396668 | 1.1:+60821523 | MS.gene52624:CDS |
| CTTCTGACATTCAATCTTGA+AGG | 0.398614 | 1.1:-60822221 | None:intergenic |
| ACAGTTTGGTGCCCCGATAA+AGG | 0.399142 | 1.1:+60821884 | MS.gene52624:CDS |
| TGTATGAAAACATGTGCTAA+TGG | 0.410801 | 1.1:+60822005 | MS.gene52624:CDS |
| CCTGCGTTGGAACCTTTATC+GGG | 0.418804 | 1.1:-60821896 | None:intergenic |
| GTCCAGAATGTCGGCTGTGC+AGG | 0.420134 | 1.1:-60821732 | None:intergenic |
| ACAATGGTCTCTGGACTAGA+AGG | 0.425187 | 1.1:-60822440 | None:intergenic |
| ATGAAGATGGCGAGGTTCAT+TGG | 0.425997 | 1.1:+60822639 | MS.gene52624:CDS |
| TTATAACATATATGTAGAAC+TGG | 0.429465 | 1.1:-60821782 | None:intergenic |
| CTAGAAGGCATATCTGAATC+TGG | 0.435298 | 1.1:-60822425 | None:intergenic |
| CCTCATCCCATCCCTCTAAT+GGG | 0.437981 | 1.1:+60821622 | MS.gene52624:CDS |
| TCTGAAGATTCTCACGTTCA+AGG | 0.438708 | 1.1:+60822371 | MS.gene52624:CDS |
| CAAGTAATCTGCAGCTTGAA+AGG | 0.439819 | 1.1:-60822599 | None:intergenic |
| GTTGATTGGGGAAGCCAATA+GGG | 0.442301 | 1.1:+60821524 | MS.gene52624:CDS |
| CGTTCAAGGTGATACGGTAT+TGG | 0.444325 | 1.1:+60822385 | MS.gene52624:CDS |
| TTGAATCTCTCTGTTGACTT+TGG | 0.447760 | 1.1:-60822143 | None:intergenic |
| GCACCAAACTGTACAAATGA+TGG | 0.448703 | 1.1:-60821873 | None:intergenic |
| AGATTGTGACTCCATTGGTT+TGG | 0.455595 | 1.1:-60822081 | None:intergenic |
| TTCAGATGGGGATTCAAAGA+AGG | 0.462344 | 1.1:-60821708 | None:intergenic |
| GGAAATGATTATGAAAAGAA+AGG | 0.462654 | 1.1:+60822170 | MS.gene52624:CDS |
| AGCAGAAACTAAAATGCAAA+GGG | 0.462702 | 1.1:+60821239 | MS.gene52624:CDS |
| CGCACTGAAGTTTGCTAACA+AGG | 0.463840 | 1.1:+60821275 | MS.gene52624:CDS |
| TCAGGACAAACAATGGTCTC+TGG | 0.469282 | 1.1:-60822449 | None:intergenic |
| CTTACATTTCTGACAGAGTA+GGG | 0.472701 | 1.1:-60821811 | None:intergenic |
| CCCATTAGAGGGATGGGATG+AGG | 0.475230 | 1.1:-60821622 | None:intergenic |
| CAAGCTGCAGATTACTTGGT+TGG | 0.486049 | 1.1:+60822604 | MS.gene52624:CDS |
| GCGGTCTTTATACGACATAA+AGG | 0.497302 | 1.1:+60821566 | MS.gene52624:CDS |
| TTAGGAACTTGATTTGCTGC+AGG | 0.499707 | 1.1:-60821648 | None:intergenic |
| AAATTATTGAAATCTGGATC+AGG | 0.500522 | 1.1:-60822467 | None:intergenic |
| TTGAACTTACCACAAGCAAT+GGG | 0.504197 | 1.1:-60822677 | None:intergenic |
| TCACAATCTTCAAACAATGT+TGG | 0.509713 | 1.1:+60822095 | MS.gene52624:CDS |
| TAGATGCTGCAGCTCTAACA+TGG | 0.513583 | 1.1:-60821596 | None:intergenic |
| CGGCTGTGCAGGTTTCAGAT+GGG | 0.513871 | 1.1:-60821721 | None:intergenic |
| CAGGTTTCCCATTAGAGGGA+TGG | 0.518826 | 1.1:-60821629 | None:intergenic |
| AGGTTTCCCATTAGAGGGAT+GGG | 0.522178 | 1.1:-60821628 | None:intergenic |
| GGTGGAACACCCGTTGGTAG+TGG | 0.522855 | 1.1:+60821948 | MS.gene52624:CDS |
| TCGGCTGTGCAGGTTTCAGA+TGG | 0.522941 | 1.1:-60821722 | None:intergenic |
| GACTCCATTGGTTTGGACAC+AGG | 0.525130 | 1.1:-60822074 | None:intergenic |
| AAGTAATCTGCAGCTTGAAA+GGG | 0.526697 | 1.1:-60822598 | None:intergenic |
| TTTGAACTTACCACAAGCAA+TGG | 0.531911 | 1.1:-60822678 | None:intergenic |
| TCATCCTTGTTACACTCCAT+TGG | 0.537571 | 1.1:-60821195 | None:intergenic |
| TTTGAAGATTGTGACTCCAT+TGG | 0.538128 | 1.1:-60822086 | None:intergenic |
| TTCGATGATTCATCTTGTCG+TGG | 0.538609 | 1.1:-60822320 | None:intergenic |
| TCTTACATTTCTGACAGAGT+AGG | 0.540313 | 1.1:-60821812 | None:intergenic |
| TCTGCACATCCACTACCAAC+GGG | 0.540348 | 1.1:-60821957 | None:intergenic |
| CGACATTCTGGACAATGTGC+AGG | 0.540691 | 1.1:+60821742 | MS.gene52624:CDS |
| AAGTCTGATATGGACTGGTA+TGG | 0.542314 | 1.1:+60821384 | MS.gene52624:CDS |
| AGTTTGCTAACAAGGCCAAA+AGG | 0.546529 | 1.1:+60821283 | MS.gene52624:CDS |
| TTCTCACGTTCAAGGTGATA+CGG | 0.547008 | 1.1:+60822379 | MS.gene52624:CDS |
| GTCTGCACATCCACTACCAA+CGG | 0.548463 | 1.1:-60821958 | None:intergenic |
| TATTCCTGTGTCCAAACCAA+TGG | 0.549550 | 1.1:+60822070 | MS.gene52624:CDS |
| GCTGCAGGTTTCCCATTAGA+GGG | 0.550927 | 1.1:-60821633 | None:intergenic |
| TAGCAGAAACTAAAATGCAA+AGG | 0.560764 | 1.1:+60821238 | MS.gene52624:CDS |
| AAAACATGTGCTAATGGAGT+TGG | 0.565348 | 1.1:+60822011 | MS.gene52624:CDS |
| TCAGATCCTTGCTGTTTGTG+AGG | 0.565840 | 1.1:+60821332 | MS.gene52624:CDS |
| GAAGCTGACCCAGATGAAGA+TGG | 0.566585 | 1.1:+60822626 | MS.gene52624:CDS |
| TCAGATGGGGATTCAAAGAA+GGG | 0.566815 | 1.1:-60821707 | None:intergenic |
| GGCTGTGCAGGTTTCAGATG+GGG | 0.569621 | 1.1:-60821720 | None:intergenic |
| CCCGATAAAGGTTCCAACGC+AGG | 0.570754 | 1.1:+60821896 | MS.gene52624:CDS |
| TGTCTAAGTCTGATATGGAC+TGG | 0.572481 | 1.1:+60821379 | MS.gene52624:CDS |
| GAACCTCGCCATCTTCATCT+GGG | 0.573701 | 1.1:-60822634 | None:intergenic |
| CCAGCCTCTAAAAGTAATGG+TGG | 0.579951 | 1.1:+60821930 | MS.gene52624:CDS |
| TTCATACATGAAGGATATGA+CGG | 0.584565 | 1.1:-60821990 | None:intergenic |
| AAATCTTGGCATAGCATCAG+TGG | 0.589734 | 1.1:-60822549 | None:intergenic |
| AGGTGATACGGTATTGGAGT+CGG | 0.590303 | 1.1:+60822391 | MS.gene52624:CDS |
| AAACCAGCCTCTAAAAGTAA+TGG | 0.592131 | 1.1:+60821927 | MS.gene52624:CDS |
| CACCAAACTGTACAAATGAT+GGG | 0.592480 | 1.1:-60821872 | None:intergenic |
| ATCTGGATCAGGACAAACAA+TGG | 0.594934 | 1.1:-60822456 | None:intergenic |
| AGCTGCTTTCAAGTTGATTG+GGG | 0.595219 | 1.1:+60821512 | MS.gene52624:CDS |
| CTCACCAATGGAGTGTAACA+AGG | 0.597020 | 1.1:+60821191 | None:intergenic |
| AAAGATGAGAAGATTAAGGA+TGG | 0.602254 | 1.1:+60822044 | MS.gene52624:CDS |
| AGATGCTGCAGCTCTAACAT+GGG | 0.602611 | 1.1:-60821595 | None:intergenic |
| CTTCAAGATTGAATGTCAGA+AGG | 0.611129 | 1.1:+60822222 | MS.gene52624:CDS |
| TAACAAGGATGACGCTGTGA+AGG | 0.611288 | 1.1:+60821206 | MS.gene52624:CDS |
| GAAGGCATATCTGAATCTGG+TGG | 0.636305 | 1.1:-60822422 | None:intergenic |
| GCAGATTTGCCCATTGCTTG+TGG | 0.637267 | 1.1:+60822668 | MS.gene52624:CDS |
| ACAAATGATGGGAAAGTCTG+TGG | 0.637568 | 1.1:-60821861 | None:intergenic |
| CTGCACATTGTCCAGAATGT+CGG | 0.643864 | 1.1:-60821741 | None:intergenic |
| AGTAATGGTGGAACACCCGT+TGG | 0.646014 | 1.1:+60821942 | MS.gene52624:CDS |
| TCTCAGAAAACTACAGATCG+TGG | 0.646401 | 1.1:+60822710 | MS.gene52624:CDS |
| CAGATGGGGATTCAAAGAAG+GGG | 0.650743 | 1.1:-60821706 | None:intergenic |
| TGACCCAGATGAAGATGGCG+AGG | 0.654361 | 1.1:+60822631 | MS.gene52624:CDS |
| TCAACAGAGAGATTCAACAC+TGG | 0.681122 | 1.1:+60822149 | MS.gene52624:CDS |
| CTGCGTTGGAACCTTTATCG+GGG | 0.681163 | 1.1:-60821895 | None:intergenic |
| TGTGAACCTCACAAACAGCA+AGG | 0.689042 | 1.1:-60821338 | None:intergenic |
| AATCTGCAGCTTGAAAGGGA+AGG | 0.703720 | 1.1:-60822594 | None:intergenic |
| TGTGTAGCAGATACGAAACA+AGG | 0.710715 | 1.1:+60823688 | MS.gene52624:CDS |
| GCAGAAACTAAAATGCAAAG+GGG | 0.741214 | 1.1:+60821240 | MS.gene52624:CDS |
| TGTTGAGTGATAAAGCAACG+CGG | 0.847765 | 1.1:+60821547 | MS.gene52624:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATACATAAAGACAATTA+AGG | - | chr1.1:60823386-60823405 | None:intergenic | 15.0% |
| !! | CTACATATATGTTATAAATA+AGG | + | chr1.1:60821788-60821807 | MS.gene52624:CDS | 15.0% |
| !! | TGATTAAATCCATTTCTTAA+AGG | + | chr1.1:60823248-60823267 | MS.gene52624:intron | 20.0% |
| !! | TTATAACATATATGTAGAAC+TGG | - | chr1.1:60821785-60821804 | None:intergenic | 20.0% |
| !! | TTCTCAAAATTATTGAAATC+TGG | - | chr1.1:60822476-60822495 | None:intergenic | 20.0% |
| !!! | AGATTTCAATAATTTTGAGA+AGG | + | chr1.1:60822475-60822494 | MS.gene52624:CDS | 20.0% |
| !!! | TTTTGCTGTAAATCAATTAT+GGG | + | chr1.1:60822514-60822533 | MS.gene52624:CDS | 20.0% |
| ! | AAATTATTGAAATCTGGATC+AGG | - | chr1.1:60822470-60822489 | None:intergenic | 25.0% |
| ! | ACATAAAGATGAGAAGATTA+AGG | + | chr1.1:60822040-60822059 | MS.gene52624:CDS | 25.0% |
| ! | ATATATGTAGAACTGGAATT+TGG | - | chr1.1:60821778-60821797 | None:intergenic | 25.0% |
| ! | ATCAAAAAACTTGAGGAAAA+AGG | - | chr1.1:60823232-60823251 | None:intergenic | 25.0% |
| ! | CATCAGATTCAGTTTATAAA+AGG | + | chr1.1:60822743-60822762 | MS.gene52624:intron | 25.0% |
| ! | GAAAATCTGTACAATTCATT+CGG | - | chr1.1:60823004-60823023 | None:intergenic | 25.0% |
| ! | GGAAATGATTATGAAAAGAA+AGG | + | chr1.1:60822170-60822189 | MS.gene52624:CDS | 25.0% |
| ! | GGATTTAATCAAAAAACTTG+AGG | - | chr1.1:60823239-60823258 | None:intergenic | 25.0% |
| ! | TTTGACAATATATAACAGAC+AGG | + | chr1.1:60823545-60823564 | MS.gene52624:intron | 25.0% |
| !! | TTGATAGTAATATAGTATCG+TGG | - | chr1.1:60823504-60823523 | None:intergenic | 25.0% |
| !!! | GTTTTGCTGTAAATCAATTA+TGG | + | chr1.1:60822513-60822532 | MS.gene52624:CDS | 25.0% |
| AAAGATGAGAAGATTAAGGA+TGG | + | chr1.1:60822044-60822063 | MS.gene52624:CDS | 30.0% | |
| AAAGCAACACGTTTCATATA+AGG | + | chr1.1:60822256-60822275 | MS.gene52624:CDS | 30.0% | |
| AGCAGAAACTAAAATGCAAA+GGG | + | chr1.1:60821239-60821258 | MS.gene52624:CDS | 30.0% | |
| CCTGATAAAAATAAATCTGC+TGG | + | chr1.1:60821483-60821502 | MS.gene52624:CDS | 30.0% | |
| GAAAAAGATTCCTCAATCTT+TGG | + | chr1.1:60823130-60823149 | MS.gene52624:intron | 30.0% | |
| GAAAATGATCTTAGATATGG+AGG | - | chr1.1:60823439-60823458 | None:intergenic | 30.0% | |
| GTAACAAAAAACACAAGACT+AGG | - | chr1.1:60823333-60823352 | None:intergenic | 30.0% | |
| TAGCAGAAACTAAAATGCAA+AGG | + | chr1.1:60821238-60821257 | MS.gene52624:CDS | 30.0% | |
| TCACAATCTTCAAACAATGT+TGG | + | chr1.1:60822095-60822114 | MS.gene52624:CDS | 30.0% | |
| TCAGAAATTGGGATATCAAT+TGG | + | chr1.1:60822822-60822841 | MS.gene52624:intron | 30.0% | |
| TGTATGAAAACATGTGCTAA+TGG | + | chr1.1:60822005-60822024 | MS.gene52624:CDS | 30.0% | |
| TTCATACATGAAGGATATGA+CGG | - | chr1.1:60821993-60822012 | None:intergenic | 30.0% | |
| TTCTAGATTAAACAGTGTGT+AGG | - | chr1.1:60823305-60823324 | None:intergenic | 30.0% | |
| TTTCCTCCACTATTTAATAC+TGG | - | chr1.1:60823208-60823227 | None:intergenic | 30.0% | |
| TTTCTTTATGATTGCTTCCT+CGG | - | chr1.1:60821433-60821452 | None:intergenic | 30.0% | |
| ! | AAAGTAGCACCTTTAAGAAA+TGG | - | chr1.1:60823260-60823279 | None:intergenic | 30.0% |
| ! | ATTTTCCAATTTCTGTCGTA+TGG | + | chr1.1:60823407-60823426 | MS.gene52624:intron | 30.0% |
| ! | TTGACAAGAGCATAAAATCT+TGG | - | chr1.1:60822566-60822585 | None:intergenic | 30.0% |
| ! | TTGGGCAATTTTCAGAAATT+GGG | + | chr1.1:60822811-60822830 | MS.gene52624:intron | 30.0% |
| !! | CAATAATTTTGAGAAGGACA+AGG | + | chr1.1:60822481-60822500 | MS.gene52624:CDS | 30.0% |
| !! | TTCTGATGTTTTGTTGCATT+AGG | - | chr1.1:60821669-60821688 | None:intergenic | 30.0% |
| !!! | CCAGCAGATTTATTTTTATC+AGG | - | chr1.1:60821486-60821505 | None:intergenic | 30.0% |
| AAAACATGTGCTAATGGAGT+TGG | + | chr1.1:60822011-60822030 | MS.gene52624:CDS | 35.0% | |
| AACAACCATACGACAGAAAT+TGG | - | chr1.1:60823415-60823434 | None:intergenic | 35.0% | |
| AAGTAATCTGCAGCTTGAAA+GGG | - | chr1.1:60822601-60822620 | None:intergenic | 35.0% | |
| AATCTGTACAATTCATTCGG+TGG | - | chr1.1:60823001-60823020 | None:intergenic | 35.0% | |
| ACGAACTCAATCTTGTATTG+TGG | + | chr1.1:60823351-60823370 | MS.gene52624:intron | 35.0% | |
| CACCAAACTGTACAAATGAT+GGG | - | chr1.1:60821875-60821894 | None:intergenic | 35.0% | |
| CCAGCTCAAACTTGTAAAAT+TGG | - | chr1.1:60823633-60823652 | None:intergenic | 35.0% | |
| CTTACATTTCTGACAGAGTA+GGG | - | chr1.1:60821814-60821833 | None:intergenic | 35.0% | |
| CTTCAAGATTGAATGTCAGA+AGG | + | chr1.1:60822222-60822241 | MS.gene52624:CDS | 35.0% | |
| CTTCTGACATTCAATCTTGA+AGG | - | chr1.1:60822224-60822243 | None:intergenic | 35.0% | |
| GCAGAAACTAAAATGCAAAG+GGG | + | chr1.1:60821240-60821259 | MS.gene52624:CDS | 35.0% | |
| GGGGAAAATGATCTTAGATA+TGG | - | chr1.1:60823442-60823461 | None:intergenic | 35.0% | |
| TCAGACTGAAAAATTATCCG+AGG | + | chr1.1:60821413-60821432 | MS.gene52624:CDS | 35.0% | |
| TCAGCTTCAAATATCTCAGT+TGG | - | chr1.1:60823112-60823131 | None:intergenic | 35.0% | |
| TCTTACATTTCTGACAGAGT+AGG | - | chr1.1:60821815-60821834 | None:intergenic | 35.0% | |
| TTCCCATCATTTGTACAGTT+TGG | + | chr1.1:60821870-60821889 | MS.gene52624:CDS | 35.0% | |
| TTGAACTTACCACAAGCAAT+GGG | - | chr1.1:60822680-60822699 | None:intergenic | 35.0% | |
| TTTATCACTCAACACCCTAT+TGG | - | chr1.1:60821541-60821560 | None:intergenic | 35.0% | |
| TTTGAACTTACCACAAGCAA+TGG | - | chr1.1:60822681-60822700 | None:intergenic | 35.0% | |
| TTTGAAGATTGTGACTCCAT+TGG | - | chr1.1:60822089-60822108 | None:intergenic | 35.0% | |
| ! | AAACCAGCCTCTAAAAGTAA+TGG | + | chr1.1:60821927-60821946 | MS.gene52624:CDS | 35.0% |
| ! | AACATGAATGCCGACATTTT+CGG | - | chr1.1:60822912-60822931 | None:intergenic | 35.0% |
| ! | AGAGCACCAGTATTAAATAG+TGG | + | chr1.1:60823199-60823218 | MS.gene52624:intron | 35.0% |
| ! | ATTAGCCTCTTTGAGAAAAC+TGG | + | chr1.1:60822959-60822978 | MS.gene52624:intron | 35.0% |
| ! | CCAATTTTACAAGTTTGAGC+TGG | + | chr1.1:60823630-60823649 | MS.gene52624:intron | 35.0% |
| ! | CCTCAATCTTTGGAAGATAA+GGG | + | chr1.1:60823140-60823159 | MS.gene52624:intron | 35.0% |
| ! | CTTGGGCAATTTTCAGAAAT+TGG | + | chr1.1:60822810-60822829 | MS.gene52624:intron | 35.0% |
| ! | GCACATGTTTTCATACATGA+AGG | - | chr1.1:60822002-60822021 | None:intergenic | 35.0% |
| ! | TCACGCTTCAGATAATTTTC+TGG | - | chr1.1:60822857-60822876 | None:intergenic | 35.0% |
| ! | TCAGATTTTGCCGAAAATGT+CGG | + | chr1.1:60822899-60822918 | MS.gene52624:intron | 35.0% |
| ! | TCCTCAATCTTTGGAAGATA+AGG | + | chr1.1:60823139-60823158 | MS.gene52624:intron | 35.0% |
| ! | TTTCTCCAGTTTTCTCAAAG+AGG | - | chr1.1:60822967-60822986 | None:intergenic | 35.0% |
| !! | AAGCTGCTTTCAAGTTGATT+GGG | + | chr1.1:60821511-60821530 | MS.gene52624:CDS | 35.0% |
| !! | ATCTGTAGTTTTCTGAGAGT+TGG | - | chr1.1:60822708-60822727 | None:intergenic | 35.0% |
| !! | TGTTCCACCATTACTTTTAG+AGG | - | chr1.1:60821937-60821956 | None:intergenic | 35.0% |
| !! | TTGAATCTCTCTGTTGACTT+TGG | - | chr1.1:60822146-60822165 | None:intergenic | 35.0% |
| !! | TTTTAGAAGGAACAGCATCA+TGG | - | chr1.1:60822298-60822317 | None:intergenic | 35.0% |
| !!! | TTACTTTTAGAGGCTGGTTT+TGG | - | chr1.1:60821927-60821946 | None:intergenic | 35.0% |
| AAATCTTGGCATAGCATCAG+TGG | - | chr1.1:60822552-60822571 | None:intergenic | 40.0% | |
| ATCTGGATCAGGACAAACAA+TGG | - | chr1.1:60822459-60822478 | None:intergenic | 40.0% | |
| CAAGCTGTCTAAGTCTGATA+TGG | + | chr1.1:60821374-60821393 | MS.gene52624:CDS | 40.0% | |
| CAAGTAATCTGCAGCTTGAA+AGG | - | chr1.1:60822602-60822621 | None:intergenic | 40.0% | |
| CCCTTATCTTCCAAAGATTG+AGG | - | chr1.1:60823143-60823162 | None:intergenic | 40.0% | |
| CGTGTATGAGGGAATTTGAT+GGG | - | chr1.1:60823026-60823045 | None:intergenic | 40.0% | |
| CTTACCTAGGAAAAGTGAAG+GGG | + | chr1.1:60822933-60822952 | MS.gene52624:intron | 40.0% | |
| CTTCAAATATCTCAGTTGGC+AGG | - | chr1.1:60823108-60823127 | None:intergenic | 40.0% | |
| CTTTCAAGCTGCAGATTACT+TGG | + | chr1.1:60822600-60822619 | MS.gene52624:CDS | 40.0% | |
| GCACCAAACTGTACAAATGA+TGG | - | chr1.1:60821876-60821895 | None:intergenic | 40.0% | |
| GCACCAGTATTAAATAGTGG+AGG | + | chr1.1:60823202-60823221 | MS.gene52624:intron | 40.0% | |
| GCGGTCTTTATACGACATAA+AGG | + | chr1.1:60821566-60821585 | MS.gene52624:CDS | 40.0% | |
| GCTTACCTAGGAAAAGTGAA+GGG | + | chr1.1:60822932-60822951 | MS.gene52624:intron | 40.0% | |
| TACCTAGTGTTTCCCAAGAA+GGG | + | chr1.1:60822782-60822801 | MS.gene52624:intron | 40.0% | |
| TATTCCTGTGTCCAAACCAA+TGG | + | chr1.1:60822070-60822089 | MS.gene52624:CDS | 40.0% | |
| TCAACAGAGAGATTCAACAC+TGG | + | chr1.1:60822149-60822168 | MS.gene52624:CDS | 40.0% | |
| TCAGATGGGGATTCAAAGAA+GGG | - | chr1.1:60821710-60821729 | None:intergenic | 40.0% | |
| TCGAATTCAAAGCAACCTCT+TGG | - | chr1.1:60823076-60823095 | None:intergenic | 40.0% | |
| TCGTGTATGAGGGAATTTGA+TGG | - | chr1.1:60823027-60823046 | None:intergenic | 40.0% | |
| TCTCAGAAAACTACAGATCG+TGG | + | chr1.1:60822710-60822729 | MS.gene52624:CDS | 40.0% | |
| TCTGAAGATTCTCACGTTCA+AGG | + | chr1.1:60822371-60822390 | MS.gene52624:CDS | 40.0% | |
| TGCTTACCTAGGAAAAGTGA+AGG | + | chr1.1:60822931-60822950 | MS.gene52624:intron | 40.0% | |
| TGTCTAAGTCTGATATGGAC+TGG | + | chr1.1:60821379-60821398 | MS.gene52624:CDS | 40.0% | |
| TGTGTAGCAGATACGAAACA+AGG | + | chr1.1:60823688-60823707 | MS.gene52624:CDS | 40.0% | |
| TGTTGAGTGATAAAGCAACG+CGG | + | chr1.1:60821547-60821566 | MS.gene52624:CDS | 40.0% | |
| TTACCTAGTGTTTCCCAAGA+AGG | + | chr1.1:60822781-60822800 | MS.gene52624:intron | 40.0% | |
| TTCAGATGGGGATTCAAAGA+AGG | - | chr1.1:60821711-60821730 | None:intergenic | 40.0% | |
| TTCGATGATTCATCTTGTCG+TGG | - | chr1.1:60822323-60822342 | None:intergenic | 40.0% | |
| TTCTCACGTTCAAGGTGATA+CGG | + | chr1.1:60822379-60822398 | MS.gene52624:CDS | 40.0% | |
| ! | AACATCAGCATACAGCCTTT+TGG | - | chr1.1:60821301-60821320 | None:intergenic | 40.0% |
| ! | ACAAATGATGGGAAAGTCTG+TGG | - | chr1.1:60821864-60821883 | None:intergenic | 40.0% |
| ! | AGATTGTGACTCCATTGGTT+TGG | - | chr1.1:60822084-60822103 | None:intergenic | 40.0% |
| ! | ATCTTTGGAAGATAAGGGAG+AGG | + | chr1.1:60823145-60823164 | MS.gene52624:intron | 40.0% |
| ! | CTAGAAGGCATATCTGAATC+TGG | - | chr1.1:60822428-60822447 | None:intergenic | 40.0% |
| ! | TCTTGTCGTGGCTTTTTAGA+AGG | - | chr1.1:60822311-60822330 | None:intergenic | 40.0% |
| !! | AAGTCTGATATGGACTGGTA+TGG | + | chr1.1:60821384-60821403 | MS.gene52624:CDS | 40.0% |
| !! | AGCTGCTTTCAAGTTGATTG+GGG | + | chr1.1:60821512-60821531 | MS.gene52624:CDS | 40.0% |
| !! | AGTTTGCTAACAAGGCCAAA+AGG | + | chr1.1:60821283-60821302 | MS.gene52624:CDS | 40.0% |
| !! | ATCTAAGATCATTTTCCCCC+AGG | + | chr1.1:60823443-60823462 | MS.gene52624:intron | 40.0% |
| !! | GAAGCGTGAATTTGCTTTTG+TGG | + | chr1.1:60822868-60822887 | MS.gene52624:intron | 40.0% |
| !! | GAAGCTGCTTTCAAGTTGAT+TGG | + | chr1.1:60821510-60821529 | MS.gene52624:CDS | 40.0% |
| !! | TAAACCCCTTCACTTTTCCT+AGG | - | chr1.1:60822940-60822959 | None:intergenic | 40.0% |
| !! | TCTAAGATCATTTTCCCCCA+GGG | + | chr1.1:60823444-60823463 | MS.gene52624:intron | 40.0% |
| !! | TTAGGAACTTGATTTGCTGC+AGG | - | chr1.1:60821651-60821670 | None:intergenic | 40.0% |
| !!! | TGAAACGTGTTGCTTTTGTC+TGG | - | chr1.1:60822252-60822271 | None:intergenic | 40.0% |
| AATCTGCAGCTTGAAAGGGA+AGG | - | chr1.1:60822597-60822616 | None:intergenic | 45.0% | |
| ACGTCATGTGGATACCTCTT+TGG | - | chr1.1:60823574-60823593 | None:intergenic | 45.0% | |
| AGGTATCCACATGACGTTAG+TGG | + | chr1.1:60823577-60823596 | MS.gene52624:intron | 45.0% | |
| AGGTTTCCCATTAGAGGGAT+GGG | - | chr1.1:60821631-60821650 | None:intergenic | 45.0% | |
| AGTTGATTGGGGAAGCCAAT+AGG | + | chr1.1:60821523-60821542 | MS.gene52624:CDS | 45.0% | |
| ATGAAGATGGCGAGGTTCAT+TGG | + | chr1.1:60822639-60822658 | MS.gene52624:CDS | 45.0% | |
| ATTCCCTCATACACGATGAG+TGG | + | chr1.1:60823031-60823050 | MS.gene52624:intron | 45.0% | |
| CAAGCTGCAGATTACTTGGT+TGG | + | chr1.1:60822604-60822623 | MS.gene52624:CDS | 45.0% | |
| CAGATGGGGATTCAAAGAAG+GGG | - | chr1.1:60821709-60821728 | None:intergenic | 45.0% | |
| CAGCATCATGGTCATCTTCA+TGG | - | chr1.1:60822286-60822305 | None:intergenic | 45.0% | |
| CGTTCAAGGTGATACGGTAT+TGG | + | chr1.1:60822385-60822404 | MS.gene52624:CDS | 45.0% | |
| CTGCACATTGTCCAGAATGT+CGG | - | chr1.1:60821744-60821763 | None:intergenic | 45.0% | |
| GTTGATTGGGGAAGCCAATA+GGG | + | chr1.1:60821524-60821543 | MS.gene52624:CDS | 45.0% | |
| TAACAAGGATGACGCTGTGA+AGG | + | chr1.1:60821206-60821225 | MS.gene52624:CDS | 45.0% | |
| TCACATCCACTAACGTCATG+TGG | - | chr1.1:60823586-60823605 | None:intergenic | 45.0% | |
| TCAGGACAAACAATGGTCTC+TGG | - | chr1.1:60822452-60822471 | None:intergenic | 45.0% | |
| TCCCAAGAAGGGAGAAACTT+GGG | + | chr1.1:60822793-60822812 | MS.gene52624:intron | 45.0% | |
| TGTGAACCTCACAAACAGCA+AGG | - | chr1.1:60821341-60821360 | None:intergenic | 45.0% | |
| TTCCCAAGAAGGGAGAAACT+TGG | + | chr1.1:60822792-60822811 | MS.gene52624:intron | 45.0% | |
| TTCCCTCATACACGATGAGT+GGG | + | chr1.1:60823032-60823051 | MS.gene52624:intron | 45.0% | |
| ! | ACAATGGTCTCTGGACTAGA+AGG | - | chr1.1:60822443-60822462 | None:intergenic | 45.0% |
| ! | AGATGCTGCAGCTCTAACAT+GGG | - | chr1.1:60821598-60821617 | None:intergenic | 45.0% |
| ! | AGGTGATACGGTATTGGAGT+CGG | + | chr1.1:60822391-60822410 | MS.gene52624:CDS | 45.0% |
| ! | CCAGCCTCTAAAAGTAATGG+TGG | + | chr1.1:60821930-60821949 | MS.gene52624:CDS | 45.0% |
| ! | CTAAGATCATTTTCCCCCAG+GGG | + | chr1.1:60823445-60823464 | MS.gene52624:intron | 45.0% |
| ! | GAAGGCATATCTGAATCTGG+TGG | - | chr1.1:60822425-60822444 | None:intergenic | 45.0% |
| ! | GGCATTCATGTTGCTTACCT+AGG | + | chr1.1:60822920-60822939 | MS.gene52624:intron | 45.0% |
| ! | TAGATGCTGCAGCTCTAACA+TGG | - | chr1.1:60821599-60821618 | None:intergenic | 45.0% |
| ! | TGCTTTGAATTCGATCCTGC+TGG | + | chr1.1:60823082-60823101 | MS.gene52624:intron | 45.0% |
| !! | CCACCATTACTTTTAGAGGC+TGG | - | chr1.1:60821933-60821952 | None:intergenic | 45.0% |
| !! | CGCACTGAAGTTTGCTAACA+AGG | + | chr1.1:60821275-60821294 | MS.gene52624:CDS | 45.0% |
| !! | CTCTCTGTTGACTTTGGTTC+TGG | - | chr1.1:60822140-60822159 | None:intergenic | 45.0% |
| !! | TCAGATCCTTGCTGTTTGTG+AGG | + | chr1.1:60821332-60821351 | MS.gene52624:CDS | 45.0% |
| !!! | CTTTTAGAGGCTGGTTTTGG+TGG | - | chr1.1:60821924-60821943 | None:intergenic | 45.0% |
| ACACGATGAGTGGGACTGAA+AGG | + | chr1.1:60823041-60823060 | MS.gene52624:intron | 50.0% | |
| ACCTCATCCCATCCCTCTAA+TGG | + | chr1.1:60821621-60821640 | MS.gene52624:CDS | 50.0% | |
| AGTCCCACTCATCGTGTATG+AGG | - | chr1.1:60823038-60823057 | None:intergenic | 50.0% | |
| ATGAGTGGGACTGAAAGGGA+AGG | + | chr1.1:60823046-60823065 | MS.gene52624:intron | 50.0% | |
| ATGTAACAATAGCGCCCCTG+GGG | - | chr1.1:60823462-60823481 | None:intergenic | 50.0% | |
| CACGATGAGTGGGACTGAAA+GGG | + | chr1.1:60823042-60823061 | MS.gene52624:intron | 50.0% | |
| CAGGTTTCCCATTAGAGGGA+TGG | - | chr1.1:60821632-60821651 | None:intergenic | 50.0% | |
| CATGTAACAATAGCGCCCCT+GGG | - | chr1.1:60823463-60823482 | None:intergenic | 50.0% | |
| CCTCATCCCATCCCTCTAAT+GGG | + | chr1.1:60821622-60821641 | MS.gene52624:CDS | 50.0% | |
| CCTGCGTTGGAACCTTTATC+GGG | - | chr1.1:60821899-60821918 | None:intergenic | 50.0% | |
| CGACATTCTGGACAATGTGC+AGG | + | chr1.1:60821742-60821761 | MS.gene52624:CDS | 50.0% | |
| CTCCCTTCTTGGGAAACACT+AGG | - | chr1.1:60822787-60822806 | None:intergenic | 50.0% | |
| CTGCGTTGGAACCTTTATCG+GGG | - | chr1.1:60821898-60821917 | None:intergenic | 50.0% | |
| GAACCTCGCCATCTTCATCT+GGG | - | chr1.1:60822637-60822656 | None:intergenic | 50.0% | |
| GAAGCTGACCCAGATGAAGA+TGG | + | chr1.1:60822626-60822645 | MS.gene52624:CDS | 50.0% | |
| GCAGATTTGCCCATTGCTTG+TGG | + | chr1.1:60822668-60822687 | MS.gene52624:CDS | 50.0% | |
| GCCCAAGTTTCTCCCTTCTT+GGG | - | chr1.1:60822797-60822816 | None:intergenic | 50.0% | |
| GCCTGCGTTGGAACCTTTAT+CGG | - | chr1.1:60821900-60821919 | None:intergenic | 50.0% | |
| GCTGCAGGTTTCCCATTAGA+GGG | - | chr1.1:60821636-60821655 | None:intergenic | 50.0% | |
| GTCCCACTCATCGTGTATGA+GGG | - | chr1.1:60823037-60823056 | None:intergenic | 50.0% | |
| GTCTGCACATCCACTACCAA+CGG | - | chr1.1:60821961-60821980 | None:intergenic | 50.0% | |
| TAACAGACAGGTCGCCAAAG+AGG | + | chr1.1:60823557-60823576 | MS.gene52624:intron | 50.0% | |
| TCATGTAACAATAGCGCCCC+TGG | - | chr1.1:60823464-60823483 | None:intergenic | 50.0% | |
| TCTGCACATCCACTACCAAC+GGG | - | chr1.1:60821960-60821979 | None:intergenic | 50.0% | |
| TGAACCTCGCCATCTTCATC+TGG | - | chr1.1:60822638-60822657 | None:intergenic | 50.0% | |
| TGCCCAAGTTTCTCCCTTCT+TGG | - | chr1.1:60822798-60822817 | None:intergenic | 50.0% | |
| TGCTGCAGGTTTCCCATTAG+AGG | - | chr1.1:60821637-60821656 | None:intergenic | 50.0% | |
| ! | AGTAATGGTGGAACACCCGT+TGG | + | chr1.1:60821942-60821961 | MS.gene52624:CDS | 50.0% |
| !! | ACAGTTTGGTGCCCCGATAA+AGG | + | chr1.1:60821884-60821903 | MS.gene52624:CDS | 50.0% |
| !! | GAAAGGGAAGGTGTTCCAAG+AGG | + | chr1.1:60823058-60823077 | MS.gene52624:intron | 50.0% |
| !! | GACTCCATTGGTTTGGACAC+AGG | - | chr1.1:60822077-60822096 | None:intergenic | 50.0% |
| AACCTGCACAGCCGACATTC+TGG | + | chr1.1:60821730-60821749 | MS.gene52624:CDS | 55.0% | |
| CCCATTAGAGGGATGGGATG+AGG | - | chr1.1:60821625-60821644 | None:intergenic | 55.0% | |
| CCCGATAAAGGTTCCAACGC+AGG | + | chr1.1:60821896-60821915 | MS.gene52624:CDS | 55.0% | |
| CGGCTGTGCAGGTTTCAGAT+GGG | - | chr1.1:60821724-60821743 | None:intergenic | 55.0% | |
| GGCTGTGCAGGTTTCAGATG+GGG | - | chr1.1:60821723-60821742 | None:intergenic | 55.0% | |
| TCGGCTGTGCAGGTTTCAGA+TGG | - | chr1.1:60821725-60821744 | None:intergenic | 55.0% | |
| TGACCCAGATGAAGATGGCG+AGG | + | chr1.1:60822631-60822650 | MS.gene52624:CDS | 55.0% | |
| TGTAACAATAGCGCCCCTGG+GGG | - | chr1.1:60823461-60823480 | None:intergenic | 55.0% | |
| ATCTCAGTTGGCAGGCCAGC+AGG | - | chr1.1:60823100-60823119 | None:intergenic | 60.0% | |
| ! | GGTGGAACACCCGTTGGTAG+TGG | + | chr1.1:60821948-60821967 | MS.gene52624:CDS | 60.0% |
| ! | GTCCAGAATGTCGGCTGTGC+AGG | - | chr1.1:60821735-60821754 | None:intergenic | 60.0% |
| !! | GGTTTTGGTGGAGCCTGCGT+TGG | - | chr1.1:60821912-60821931 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 60821198 | 60823714 | 60821198 | ID=MS.gene52624 |
| chr1.1 | mRNA | 60821198 | 60823714 | 60821198 | ID=MS.gene52624.t1;Parent=MS.gene52624 |
| chr1.1 | exon | 60821198 | 60822731 | 60821198 | ID=MS.gene52624.t1.exon1;Parent=MS.gene52624.t1 |
| chr1.1 | CDS | 60821198 | 60822731 | 60821198 | ID=cds.MS.gene52624.t1;Parent=MS.gene52624.t1 |
| chr1.1 | exon | 60823683 | 60823714 | 60823683 | ID=MS.gene52624.t1.exon2;Parent=MS.gene52624.t1 |
| chr1.1 | CDS | 60823683 | 60823714 | 60823683 | ID=cds.MS.gene52624.t1;Parent=MS.gene52624.t1 |
| Gene Sequence |
| Protein sequence |
