AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53697

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53697.t1 MTR_1g085150 86.803 735 68 4 1 708 3 735 0.0 1296
MS.gene53697.t1 MTR_1g110430 38.838 327 197 2 223 548 269 593 3.62e-63 225
MS.gene53697.t1 MTR_8g009900 35.294 102 57 2 225 317 55 156 7.81e-11 65.5
MS.gene53697.t1 MTR_8g009900 35.294 102 57 2 225 317 55 156 9.15e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53697.t1 AT5G26710 67.671 730 194 9 1 702 1 716 0.0 1021
MS.gene53697.t1 AT1G25350 38.838 327 197 2 223 548 269 593 8.23e-63 224
MS.gene53697.t1 AT1G25350 33.512 373 238 4 223 587 269 639 5.25e-54 199

Find 156 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACGACTGGCTGGTCTTT+TGG 0.151703 1.3:+29487695 None:intergenic
TAGAGGAGAATTTGAAATTA+TGG 0.211763 1.3:-29487217 MS.gene53697:CDS
CGCAATGACCGCAGTGTGTC+TGG 0.261894 1.3:+29486500 None:intergenic
CAATCGCAGATCTAGCTATC+TGG 0.266430 1.3:-29488051 MS.gene53697:CDS
CCTCATCATAGAATTGAAAT+TGG 0.278785 1.3:-29487077 MS.gene53697:CDS
TCAAATTCTCCTCTATACTA+TGG 0.289207 1.3:+29487225 None:intergenic
GCAACTCTTCCTAATTTCTA+TGG 0.300296 1.3:-29489229 MS.gene53697:CDS
CGCTAACGGTGGCGTGGCGG+CGG 0.305466 1.3:+29489472 None:intergenic
ACGATGGTACAATTCATTAA+TGG 0.307383 1.3:-29487798 MS.gene53697:CDS
TCCACGTTTACAAATGAAAA+AGG 0.308099 1.3:-29487282 MS.gene53697:CDS
TTACCTCATTACGAAGAAAA+AGG 0.308169 1.3:-29486133 MS.gene53697:intron
TCAGCAAACGAAAGCTTCTA+TGG 0.315812 1.3:-29486860 MS.gene53697:CDS
GCTATCTGGGCAGGTCTTGC+AGG 0.316994 1.3:-29488037 MS.gene53697:intron
CGAATTTAGCCGGTTGAATA+TGG 0.317857 1.3:-29486895 MS.gene53697:CDS
GATGTCTGCTGCCTGCCATC+TGG 0.343011 1.3:+29485630 None:intergenic
TGAAGATAGCCACTGGGTTC+AGG 0.349425 1.3:+29487554 None:intergenic
GAAGTCACATCAACATATAT+TGG 0.353025 1.3:-29487752 MS.gene53697:CDS
CCCAGTGGCTATCTTCATAT+TGG 0.358754 1.3:-29487548 MS.gene53697:CDS
AAGCTACCACATATACAAAA+AGG 0.360107 1.3:-29486383 MS.gene53697:CDS
GTGGCCTTCACAGATCCTTC+AGG 0.367494 1.3:+29486222 None:intergenic
GCTAACGGTGGCGTGGCGGC+GGG 0.369662 1.3:+29489473 None:intergenic
CGCCGCCACGCCACCGTTAG+CGG 0.386038 1.3:-29489471 MS.gene53697:CDS
ACCCTGTGACATTCCCATCT+TGG 0.408163 1.3:+29486262 None:intergenic
CTTCCCTGAGTTGATGAAAC+TGG 0.410276 1.3:-29487348 MS.gene53697:CDS
TCAATTCTATGATGAGGCTT+TGG 0.410722 1.3:+29487083 None:intergenic
GCGTGGCGGCGGGGAAAGAA+AGG 0.412386 1.3:+29489483 None:intergenic
GGAAGTAACCTTGATGGATT+GGG 0.417880 1.3:-29486316 MS.gene53697:CDS
AGTTGGATACACTTTATACT+TGG 0.420137 1.3:+29487052 None:intergenic
ACACGATTGGTTTCGAAGGC+CGG 0.426191 1.3:+29485664 None:intergenic
GGATCACGGAGTGATTTGTT+TGG 0.426882 1.3:+29487125 None:intergenic
ACTAGCTAGCCTGACATTGA+TGG 0.433171 1.3:-29486163 MS.gene53697:CDS
TGAAGAAAATCCGGCGAGCT+TGG 0.433828 1.3:+29489436 None:intergenic
CTTTGTTTGCAGCTTGAGAA+AGG 0.435061 1.3:-29485854 MS.gene53697:intron
GGATTGCAACGATAATAAAC+AGG 0.436698 1.3:+29487104 None:intergenic
AAAAGAGCAAAGTTGAATCA+TGG 0.437459 1.3:-29486830 MS.gene53697:CDS
AGGAAGTAACCTTGATGGAT+TGG 0.439791 1.3:-29486317 MS.gene53697:CDS
CCACATTTCTCTTCTCCAAC+GGG 0.442745 1.3:-29489379 MS.gene53697:intron
GATAAAAGATGTTAAGATGT+TGG 0.451442 1.3:-29487408 MS.gene53697:CDS
CTTATCTATTTCCTTTACTA+CGG 0.452738 1.3:+29486287 None:intergenic
GTCAATGGATGAAGAAAATC+CGG 0.453714 1.3:+29489427 None:intergenic
CAGCTTGAGAAAGGAAAGAA+TGG 0.456822 1.3:-29485845 MS.gene53697:CDS
TTATGGAAGGAAATGATTGC+AGG 0.457763 1.3:-29487200 MS.gene53697:CDS
ATAAAAGATGTTAAGATGTT+GGG 0.458475 1.3:-29487407 MS.gene53697:CDS
CCACAAAACTGAAGCTCACT+TGG 0.463144 1.3:-29486203 MS.gene53697:CDS
AAATCTCAATCTCATGGAAT+GGG 0.463289 1.3:-29486568 MS.gene53697:CDS
CAAGTATATTGATGACTACT+TGG 0.468006 1.3:-29488107 MS.gene53697:CDS
AGGAGGAAGGGAGGTGTCAA+TGG 0.471796 1.3:+29489412 None:intergenic
AAAATCTCAATCTCATGGAA+TGG 0.472161 1.3:-29486569 MS.gene53697:CDS
GATAAAGTGAAGAATGTGAA+TGG 0.472243 1.3:-29487671 MS.gene53697:CDS
ATAAAGTGAAGAATGTGAAT+GGG 0.472454 1.3:-29487670 MS.gene53697:CDS
TTCTCATCTACGAATTTAGC+CGG 0.474652 1.3:-29486905 MS.gene53697:CDS
TCCAATATGAAGATAGCCAC+TGG 0.476082 1.3:+29487547 None:intergenic
TACTTCCTCACCTGCTGATA+CGG 0.478040 1.3:+29486332 None:intergenic
GCAGTGTGTCTGGGACATAC+AGG 0.479972 1.3:+29486510 None:intergenic
TCATGGAATGGGACAAGCTA+TGG 0.483068 1.3:-29486557 MS.gene53697:CDS
ATGTCTGCTGCCTGCCATCT+GGG 0.485977 1.3:+29485631 None:intergenic
GGCGGAATCAGGAGGAAGGG+AGG 0.488649 1.3:+29489403 None:intergenic
CCCACATTTCTCTTCTCCAA+CGG 0.489052 1.3:-29489380 MS.gene53697:CDS
TGCTGAGCGATACAAAGGTC+AGG 0.492981 1.3:-29487492 MS.gene53697:CDS
TCAGCCAGTTTCATCAACTC+AGG 0.495331 1.3:+29487344 None:intergenic
GACCAAGATGGGAATGTCAC+AGG 0.497471 1.3:-29486264 MS.gene53697:CDS
GGACAGGCAAAATCATAAGT+TGG 0.503923 1.3:+29487035 None:intergenic
GAGTGTAGACCATATTCAAC+CGG 0.504461 1.3:+29486886 None:intergenic
GGGATTGCAAATAACACGAT+TGG 0.508386 1.3:+29485651 None:intergenic
GAAATAGATAAGGACCAAGA+TGG 0.508595 1.3:-29486276 MS.gene53697:CDS
ATGCGGACAAATGATTTCTC+AGG 0.508905 1.3:+29486444 None:intergenic
TTCACTTTATCCTTGACGAC+TGG 0.509750 1.3:+29487683 None:intergenic
TTTCAGGTGCTGGAAAGAGA+TGG 0.510988 1.3:-29487859 MS.gene53697:intron
AATCAAACTCCATCAATGTC+AGG 0.511094 1.3:+29486154 None:intergenic
GACGCAGAGTCCGTATCAGC+AGG 0.511379 1.3:-29486342 MS.gene53697:CDS
TCTGATAACATTAAGGGAGG+AGG 0.512500 1.3:-29487641 MS.gene53697:CDS
TATGCACATGTACTCTCATC+AGG 0.512531 1.3:-29488151 MS.gene53697:CDS
CTTTATCCTTGACGACTGGC+TGG 0.513178 1.3:+29487687 None:intergenic
CGTAGTAAAGGAAATAGATA+AGG 0.513600 1.3:-29486286 MS.gene53697:CDS
GATCTTCCAGATGCTGAAGT+TGG 0.514176 1.3:-29487599 MS.gene53697:CDS
AAAATTAATTAGCCAGGGTA+AGG 0.515011 1.3:-29487321 MS.gene53697:CDS
GGTGTGATGTACCGTTCGTC+CGG 0.516590 1.3:-29485683 MS.gene53697:CDS
CCTTCACGAGCATCAACAAA+TGG 0.521928 1.3:+29487014 None:intergenic
AAGGTATCACTCATGCCCTT+CGG 0.524399 1.3:-29486995 MS.gene53697:CDS
GGCATTTCCCCAATCCATCA+AGG 0.525365 1.3:+29486308 None:intergenic
AATCGCAGATCTAGCTATCT+GGG 0.526585 1.3:-29488050 MS.gene53697:CDS
ATGCAGAAACCATAGTATAG+AGG 0.528118 1.3:-29487234 MS.gene53697:CDS
TTCAGGTGCTGGAAAGAGAT+GGG 0.528173 1.3:-29487858 MS.gene53697:intron
GTGTTATGTCCGTGGGAAGT+TGG 0.531075 1.3:-29487159 MS.gene53697:CDS
ATGTAACGCAGAAGAACAAA+TGG 0.533432 1.3:+29489262 None:intergenic
GGAGAATTTGAAATTATGGA+AGG 0.534607 1.3:-29487213 MS.gene53697:CDS
CCAATTTCAATTCTATGATG+AGG 0.535124 1.3:+29487077 None:intergenic
TTGGGGAAATGCCGTAGTAA+AGG 0.539791 1.3:-29486298 MS.gene53697:CDS
GGGAATGTCACAGGGTTAAG+TGG 0.540528 1.3:-29486255 MS.gene53697:CDS
ATCGTAATGCTCAGTATCAC+AGG 0.540697 1.3:-29486956 MS.gene53697:CDS
AAAGAGCAAAGTTGAATCAT+GGG 0.544517 1.3:-29486829 MS.gene53697:CDS
TTTGTTCTTCTGCGTTACAT+TGG 0.545230 1.3:-29489259 MS.gene53697:CDS
GGCTTGCAGTGTTATGTCCG+TGG 0.546395 1.3:-29487167 MS.gene53697:CDS
AAATCCGGCGAGCTTGGATG+CGG 0.549060 1.3:+29489442 None:intergenic
CTAACGGTGGCGTGGCGGCG+GGG 0.550981 1.3:+29489474 None:intergenic
AGGTGAGGAAGTAACCTTGA+TGG 0.551874 1.3:-29486322 MS.gene53697:CDS
AAATAGATAAGGACCAAGAT+GGG 0.555380 1.3:-29486275 MS.gene53697:CDS
TATTTGCAATCCCAGATGGC+AGG 0.556570 1.3:-29485641 MS.gene53697:CDS
GTGTTATTTGCAATCCCAGA+TGG 0.560737 1.3:-29485645 MS.gene53697:CDS
GCAATGACCGCAGTGTGTCT+GGG 0.562664 1.3:+29486501 None:intergenic
CGTGGCGGCGGGGAAAGAAA+GGG 0.563293 1.3:+29489484 None:intergenic
CAGCCAGTTTCATCAACTCA+GGG 0.564927 1.3:+29487345 None:intergenic
CCGTTGGAGAAGAGAAATGT+GGG 0.567490 1.3:+29489380 None:intergenic
ACGAGCATCAACAAATGGAC+AGG 0.568037 1.3:+29487019 None:intergenic
CTAGCTAGTTCATCTAACTC+AGG 0.569103 1.3:+29486177 None:intergenic
TAAGGGAGGAGGCATGCCTT+CGG 0.569498 1.3:-29487630 MS.gene53697:CDS
CGCACAATTCCTTGCACTGT+AGG 0.569571 1.3:+29486792 None:intergenic
GCAGATCTAGCTATCTGGGC+AGG 0.571047 1.3:-29488046 MS.gene53697:CDS
TCACAGGATTCAAGAGGACA+TGG 0.578665 1.3:-29486940 MS.gene53697:CDS
CCACGATTTCCTACAGTGCA+AGG 0.583620 1.3:-29486801 MS.gene53697:CDS
AGCTTGAGAAAGGAAAGAAT+GGG 0.586130 1.3:-29485844 MS.gene53697:CDS
GCTTGCAGTGTTATGTCCGT+GGG 0.592046 1.3:-29487166 MS.gene53697:CDS
CCTTGCACTGTAGGAAATCG+TGG 0.592445 1.3:+29486801 None:intergenic
AGAGTCCGTATCAGCAGGTG+AGG 0.595755 1.3:-29486337 MS.gene53697:CDS
ACATCCTGAAGGATCTGTGA+AGG 0.597097 1.3:-29486226 MS.gene53697:CDS
AATAACACGATTGGTTTCGA+AGG 0.600160 1.3:+29485660 None:intergenic
GTGGTATTCACTTGACCGAA+GGG 0.600221 1.3:+29486980 None:intergenic
AATGATTGCAGGATCAGAGA+GGG 0.601106 1.3:-29487189 MS.gene53697:CDS
GAAAGAGATGGGAAAGCTTG+AGG 0.602516 1.3:-29487847 MS.gene53697:CDS
CATTTGTCCGCATCATACCT+AGG 0.604356 1.3:-29486434 MS.gene53697:CDS
AAAAGACCAGCCAGTCGTCA+AGG 0.604519 1.3:-29487693 MS.gene53697:CDS
CCCGTTGGAGAAGAGAAATG+TGG 0.604923 1.3:+29489379 None:intergenic
ATCGCCGCATCCAAGCTCGC+CGG 0.606160 1.3:-29489446 MS.gene53697:CDS
GGTTTCGAAGGCCGGACGAA+CGG 0.607720 1.3:+29485672 None:intergenic
TACCGCTAACGGTGGCGTGG+CGG 0.610856 1.3:+29489469 None:intergenic
CCATTTGTTGATGCTCGTGA+AGG 0.612122 1.3:-29487014 MS.gene53697:CDS
GTATTATTAACCCTCACTGA+TGG 0.615047 1.3:-29486468 MS.gene53697:CDS
CAGTGTGTCTGGGACATACA+GGG 0.618476 1.3:+29486511 None:intergenic
TAAAGTGAAGAATGTGAATG+GGG 0.619059 1.3:-29487669 MS.gene53697:CDS
CGTGGTATTCACTTGACCGA+AGG 0.620830 1.3:+29486979 None:intergenic
GATTACCGCTAACGGTGGCG+TGG 0.621156 1.3:+29489466 None:intergenic
CCAATATGAAGATAGCCACT+GGG 0.621615 1.3:+29487548 None:intergenic
GATACTGAGCATTACGATCG+TGG 0.634209 1.3:+29486961 None:intergenic
CGTAACAGGTCGAAATTGCG+TGG 0.638158 1.3:-29489286 MS.gene53697:intron
AATTCATTAATGGCAGAACA+TGG 0.639138 1.3:-29487788 MS.gene53697:CDS
ACCAAGATGGGAATGTCACA+GGG 0.639741 1.3:-29486263 MS.gene53697:CDS
CTTGCATATCCAACTTCCCA+CGG 0.647797 1.3:+29487150 None:intergenic
AACGATAATAAACAGGATCA+CGG 0.648773 1.3:+29487111 None:intergenic
CGATTTGCACCTGAACCCAG+TGG 0.648921 1.3:-29487563 MS.gene53697:CDS
TTTCTCAGGACCATCAGTGA+GGG 0.655675 1.3:+29486458 None:intergenic
GGAAGATCTATCTCTACCGA+AGG 0.663050 1.3:+29487614 None:intergenic
GAAGTAACCTTGATGGATTG+GGG 0.667338 1.3:-29486315 MS.gene53697:CDS
GCGGCGATTACCGCTAACGG+TGG 0.670603 1.3:+29489461 None:intergenic
TCAGTATCACAGGATTCAAG+AGG 0.673861 1.3:-29486946 MS.gene53697:CDS
CAGACACACTGCGGTCATTG+CGG 0.674648 1.3:-29486499 MS.gene53697:CDS
GATGCGGCGATTACCGCTAA+CGG 0.676425 1.3:+29489458 None:intergenic
GTGCAAGGAATTGTGCGTAG+AGG 0.676449 1.3:-29486786 MS.gene53697:CDS
ATTTCTCAGGACCATCAGTG+AGG 0.679162 1.3:+29486457 None:intergenic
AATATCAAAATCTTGCACGA+TGG 0.684460 1.3:-29487814 MS.gene53697:CDS
CACAGGATTCAAGAGGACAT+GGG 0.686727 1.3:-29486939 MS.gene53697:CDS
CATCAACATATGCCTTACCC+TGG 0.687143 1.3:+29487309 None:intergenic
AAATGATTGCAGGATCAGAG+AGG 0.689019 1.3:-29487190 MS.gene53697:CDS
ATGATTGCAGGATCAGAGAG+GGG 0.699155 1.3:-29487188 MS.gene53697:CDS
GTTGGAGAAGAGAAATGTGG+GGG 0.702868 1.3:+29489382 None:intergenic
CGTTGGAGAAGAGAAATGTG+GGG 0.703973 1.3:+29489381 None:intergenic
TGTATGTCCCAGACACACTG+CGG 0.755590 1.3:-29486508 MS.gene53697:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTCTTATAACATATA+TGG + chr1.3:29489142-29489161 None:intergenic 15.0%
!! ATACTTGTTCAAAAATAAAT+TGG + chr1.3:29488378-29488397 None:intergenic 15.0%
!! TAAAGAAAAAAAAGAATTTG+TGG - chr1.3:29487679-29487698 MS.gene53697:CDS 15.0%
!!! ATGTTATAAGAATTTGTTAA+CGG - chr1.3:29489145-29489164 MS.gene53697:intron 15.0%
!!! GTCAATAATTTTTTTATTGA+TGG + chr1.3:29488587-29488606 None:intergenic 15.0%
!! ATAAAAGATGTTAAGATGTT+GGG - chr1.3:29487710-29487729 MS.gene53697:CDS 20.0%
!! ATATATCAGAAAAAATAACC+TGG + chr1.3:29485935-29485954 None:intergenic 20.0%
!! ATTCTTATAACATATATGGA+AGG + chr1.3:29489138-29489157 None:intergenic 20.0%
!! TTTGATTCTGTCATTAATAA+AGG - chr1.3:29489024-29489043 MS.gene53697:intron 20.0%
!!! AATTCTTTTTTTTCTTTAGC+AGG + chr1.3:29487677-29487696 None:intergenic 20.0%
!!! ATAATTTTGAGTTTATAGCT+TGG - chr1.3:29486088-29486107 MS.gene53697:intron 20.0%
!!! ATTGTTTTCATAAGATAACT+TGG - chr1.3:29486502-29486521 MS.gene53697:CDS 20.0%
!!! GATTTTTCTGATAACATTAA+GGG - chr1.3:29487470-29487489 MS.gene53697:CDS 20.0%
! AAGAAACAACAATTGAATGA+CGG + chr1.3:29486917-29486936 None:intergenic 25.0%
! AATAAGTTGTTTAACCAAAC+AGG + chr1.3:29486023-29486042 None:intergenic 25.0%
! AATTTGCAATTATTCGTAAC+AGG - chr1.3:29485817-29485836 MS.gene53697:CDS 25.0%
! ATAAAGTGAAGAATGTGAAT+GGG - chr1.3:29487447-29487466 MS.gene53697:CDS 25.0%
! ATAAGTTGTTTAACCAAACA+GGG + chr1.3:29486022-29486041 None:intergenic 25.0%
! ATATATTGGCAAAAAAGGAT+CGG - chr1.3:29487379-29487398 MS.gene53697:CDS 25.0%
! ATCAAAAAATCTCAATCTCA+TGG - chr1.3:29488543-29488562 MS.gene53697:intron 25.0%
! CTTATCTATTTCCTTTACTA+CGG + chr1.3:29488833-29488852 None:intergenic 25.0%
! GATAAAAGATGTTAAGATGT+TGG - chr1.3:29487709-29487728 MS.gene53697:CDS 25.0%
! GATTGATTGACAATAGTTTA+GGG - chr1.3:29486769-29486788 MS.gene53697:CDS 25.0%
! GTCAATCAATCAATCAATTT+GGG + chr1.3:29486760-29486779 None:intergenic 25.0%
! TATAAAACACTTACGTAGTA+GGG - chr1.3:29486050-29486069 MS.gene53697:intron 25.0%
! TCAACATATATTGGCAAAAA+AGG - chr1.3:29487374-29487393 MS.gene53697:CDS 25.0%
! TGATTGATTGACAATAGTTT+AGG - chr1.3:29486768-29486787 MS.gene53697:CDS 25.0%
! TGTCAATCAATCAATCAATT+TGG + chr1.3:29486761-29486780 None:intergenic 25.0%
! TTATAAAACACTTACGTAGT+AGG - chr1.3:29486049-29486068 MS.gene53697:intron 25.0%
!! ATAAGTGATGTTGTCTTTTA+AGG - chr1.3:29485996-29486015 MS.gene53697:intron 25.0%
!! GGATTTTTCTGATAACATTA+AGG - chr1.3:29487469-29487488 MS.gene53697:CDS 25.0%
!! TAGAGGAGAATTTGAAATTA+TGG - chr1.3:29487900-29487919 MS.gene53697:intron 25.0%
!! TATGATATTTCTGTAGTTCA+AGG + chr1.3:29486666-29486685 None:intergenic 25.0%
!! TGGTATTTATAGCCTTTTAT+GGG - chr1.3:29486247-29486266 MS.gene53697:CDS 25.0%
AAAAAGGAGATTCTAGCATA+TGG - chr1.3:29489346-29489365 MS.gene53697:intron 30.0%
AAAAGAGCAAAGTTGAATCA+TGG - chr1.3:29488287-29488306 MS.gene53697:intron 30.0%
AAAATCTCAATCTCATGGAA+TGG - chr1.3:29488548-29488567 MS.gene53697:intron 30.0%
AAAATTAATTAGCCAGGGTA+AGG - chr1.3:29487796-29487815 MS.gene53697:CDS 30.0%
AAAGAGCAAAGTTGAATCAT+GGG - chr1.3:29488288-29488307 MS.gene53697:intron 30.0%
AAAGCACAATAAGGAATACT+AGG - chr1.3:29486161-29486180 MS.gene53697:CDS 30.0%
AAATAGATAAGGACCAAGAT+GGG - chr1.3:29488842-29488861 MS.gene53697:intron 30.0%
AAATCTCAATCTCATGGAAT+GGG - chr1.3:29488549-29488568 MS.gene53697:intron 30.0%
AACGATAATAAACAGGATCA+CGG + chr1.3:29488009-29488028 None:intergenic 30.0%
AAGCACAATAAGGAATACTA+GGG - chr1.3:29486162-29486181 MS.gene53697:CDS 30.0%
AAGCTACCACATATACAAAA+AGG - chr1.3:29488734-29488753 MS.gene53697:intron 30.0%
AATAGGAGAGTGATAGTTTA+AGG - chr1.3:29486733-29486752 MS.gene53697:intron 30.0%
AATATCAAAATCTTGCACGA+TGG - chr1.3:29487303-29487322 MS.gene53697:CDS 30.0%
AATTCATTAATGGCAGAACA+TGG - chr1.3:29487329-29487348 MS.gene53697:CDS 30.0%
ACAAATGAAAAAGGAGAGAA+GGG - chr1.3:29487844-29487863 MS.gene53697:CDS 30.0%
ACGATGGTACAATTCATTAA+TGG - chr1.3:29487319-29487338 MS.gene53697:CDS 30.0%
AGAGAAACAATCACTAAACA+AGG + chr1.3:29487182-29487201 None:intergenic 30.0%
AGCAATATTTACTGCTTGTT+TGG + chr1.3:29486599-29486618 None:intergenic 30.0%
AGTTGGATACACTTTATACT+TGG + chr1.3:29488068-29488087 None:intergenic 30.0%
ATATATGGAAGGTTCATGAA+AGG + chr1.3:29489127-29489146 None:intergenic 30.0%
ATCAAGAATAGTTTCAAGAC+TGG + chr1.3:29486690-29486709 None:intergenic 30.0%
ATTGATAGATCATAGAAACG+AGG + chr1.3:29485797-29485816 None:intergenic 30.0%
CCAATTTCAATTCTATGATG+AGG + chr1.3:29488043-29488062 None:intergenic 30.0%
CCACATATACAAAAAGGATA+TGG - chr1.3:29488740-29488759 MS.gene53697:intron 30.0%
CCATCAAGTTTCATAGATTA+AGG + chr1.3:29487209-29487228 None:intergenic 30.0%
CCTCATCATAGAATTGAAAT+TGG - chr1.3:29488040-29488059 MS.gene53697:CDS 30.0%
CCTTAATCTATGAAACTTGA+TGG - chr1.3:29487206-29487225 MS.gene53697:CDS 30.0%
CGTAGTAAAGGAAATAGATA+AGG - chr1.3:29488831-29488850 MS.gene53697:intron 30.0%
GAAGTCACATCAACATATAT+TGG - chr1.3:29487365-29487384 MS.gene53697:CDS 30.0%
GATAAAGTGAAGAATGTGAA+TGG - chr1.3:29487446-29487465 MS.gene53697:CDS 30.0%
GCTGAAAAATTAATTAGCCA+GGG - chr1.3:29487791-29487810 MS.gene53697:CDS 30.0%
TAAAGTGAAGAATGTGAATG+GGG - chr1.3:29487448-29487467 MS.gene53697:CDS 30.0%
TACAAATGAAAAAGGAGAGA+AGG - chr1.3:29487843-29487862 MS.gene53697:CDS 30.0%
TATATTGGCAAAAAAGGATC+GGG - chr1.3:29487380-29487399 MS.gene53697:CDS 30.0%
TCAAATTCTCCTCTATACTA+TGG + chr1.3:29487895-29487914 None:intergenic 30.0%
TCCACGTTTACAAATGAAAA+AGG - chr1.3:29487835-29487854 MS.gene53697:CDS 30.0%
TCCTTGGTTTCTTTCAAAAT+AGG - chr1.3:29486716-29486735 MS.gene53697:intron 30.0%
TTACCTCATTACGAAGAAAA+AGG - chr1.3:29488984-29489003 MS.gene53697:intron 30.0%
TTGTTTAGGGATCAAATTGA+AGG - chr1.3:29486842-29486861 MS.gene53697:CDS 30.0%
TTTAGTAGTAGTAGTATCAC+AGG + chr1.3:29487145-29487164 None:intergenic 30.0%
! AGTGATCAACATTTTAAGCA+TGG + chr1.3:29488506-29488525 None:intergenic 30.0%
! ATACCTTTTTCTTCGTAATG+AGG + chr1.3:29488990-29489009 None:intergenic 30.0%
! CAAGTATATTGATGACTACT+TGG - chr1.3:29487010-29487029 MS.gene53697:CDS 30.0%
! CCATATCCTTTTTGTATATG+TGG + chr1.3:29488743-29488762 None:intergenic 30.0%
! GGAGAATTTGAAATTATGGA+AGG - chr1.3:29487904-29487923 MS.gene53697:intron 30.0%
! GGTCTTTAGGAATATATTGA+CGG - chr1.3:29486455-29486474 MS.gene53697:CDS 30.0%
! GTGGTATTTATAGCCTTTTA+TGG - chr1.3:29486246-29486265 MS.gene53697:CDS 30.0%
! TACTTGCAAAAAGCACAATA+AGG - chr1.3:29486152-29486171 MS.gene53697:CDS 30.0%
! TATTCTTGATAGTTAGTCCT+TGG - chr1.3:29486700-29486719 MS.gene53697:intron 30.0%
! TGACTTTTCAGATTGATCAA+TGG - chr1.3:29486937-29486956 MS.gene53697:CDS 30.0%
! TTTTCTGATAACATTAAGGG+AGG - chr1.3:29487473-29487492 MS.gene53697:CDS 30.0%
!! AAATGTTTTTCAAACTAGCC+AGG - chr1.3:29485914-29485933 MS.gene53697:intron 30.0%
!! ACATTTTGGCCATAGAAATT+AGG + chr1.3:29485900-29485919 None:intergenic 30.0%
!! TCCTATTTTGAAAGAAACCA+AGG + chr1.3:29486720-29486739 None:intergenic 30.0%
!! TCCTTTTTCATTTGTAAACG+TGG + chr1.3:29487839-29487858 None:intergenic 30.0%
!!! GGCTAGTTTGAAAAACATTT+TGG + chr1.3:29485914-29485933 None:intergenic 30.0%
AATATGCGAAATCTTAAGCG+TGG - chr1.3:29489376-29489395 MS.gene53697:intron 35.0%
AATCAAACTCCATCAATGTC+AGG + chr1.3:29488966-29488985 None:intergenic 35.0%
ACAAAAACTATGAAGCTGCT+GGG - chr1.3:29488707-29488726 MS.gene53697:intron 35.0%
ACGCTTAAGATTTCGCATAT+TGG + chr1.3:29489377-29489396 None:intergenic 35.0%
AGCTTGAGAAAGGAAAGAAT+GGG - chr1.3:29489273-29489292 MS.gene53697:CDS 35.0%
AGGGTTTAGTATCGTATTCT+AGG - chr1.3:29486181-29486200 MS.gene53697:CDS 35.0%
AGGTGAAGATGAATAGGTAT+AGG + chr1.3:29487125-29487144 None:intergenic 35.0%
AGTGTGAAGAGATATGAGAA+AGG + chr1.3:29485771-29485790 None:intergenic 35.0%
ATGCAGAAACCATAGTATAG+AGG - chr1.3:29487883-29487902 MS.gene53697:intron 35.0%
ATGTAACGCAGAAGAACAAA+TGG + chr1.3:29485858-29485877 None:intergenic 35.0%
CAAATGAAAAAGGAGAGAAG+GGG - chr1.3:29487845-29487864 MS.gene53697:CDS 35.0%
CTAGGGTTTAGACTGATTAT+TGG - chr1.3:29486199-29486218 MS.gene53697:CDS 35.0%
GAAATAGATAAGGACCAAGA+TGG - chr1.3:29488841-29488860 MS.gene53697:intron 35.0%
GCAACTCTTCCTAATTTCTA+TGG - chr1.3:29485888-29485907 MS.gene53697:intron 35.0%
GGATTGCAACGATAATAAAC+AGG + chr1.3:29488016-29488035 None:intergenic 35.0%
GGCTGAAAAATTAATTAGCC+AGG - chr1.3:29487790-29487809 MS.gene53697:CDS 35.0%
GGGTTTAGTATCGTATTCTA+GGG - chr1.3:29486182-29486201 MS.gene53697:CDS 35.0%
GTATTATTAACCCTCACTGA+TGG - chr1.3:29488649-29488668 MS.gene53697:intron 35.0%
GTCAATGGATGAAGAAAATC+CGG + chr1.3:29485693-29485712 None:intergenic 35.0%
GTGTGAAGAGATATGAGAAA+GGG + chr1.3:29485770-29485789 None:intergenic 35.0%
GTTCATGAAAGGTTCATGAT+TGG + chr1.3:29489116-29489135 None:intergenic 35.0%
TACTTAGGCAGCAAGTAATA+GGG - chr1.3:29486286-29486305 MS.gene53697:CDS 35.0%
TATCACAGGTGAAGATGAAT+AGG + chr1.3:29487131-29487150 None:intergenic 35.0%
TCAATTCTATGATGAGGCTT+TGG + chr1.3:29488037-29488056 None:intergenic 35.0%
TTACTTAGGCAGCAAGTAAT+AGG - chr1.3:29486285-29486304 MS.gene53697:CDS 35.0%
TTATGGAAGGAAATGATTGC+AGG - chr1.3:29487917-29487936 MS.gene53697:intron 35.0%
TTCTCATCTACGAATTTAGC+CGG - chr1.3:29488212-29488231 MS.gene53697:intron 35.0%
TTGATCACTGTTGTTGTACA+GGG - chr1.3:29488517-29488536 MS.gene53697:intron 35.0%
TTGTGTCAGTAGAAATCGTA+TGG + chr1.3:29489093-29489112 None:intergenic 35.0%
TTTGTTCTTCTGCGTTACAT+TGG - chr1.3:29485858-29485877 MS.gene53697:intron 35.0%
! AACCAAAGTGTCTATGCATA+GGG + chr1.3:29489185-29489204 None:intergenic 35.0%
! TATTTTGCTGAGCGATACAA+AGG - chr1.3:29487620-29487639 MS.gene53697:CDS 35.0%
! TGCATCCATTTTCAAAAGCA+GGG + chr1.3:29486992-29487011 None:intergenic 35.0%
! TTGCATCCATTTTCAAAAGC+AGG + chr1.3:29486993-29487012 None:intergenic 35.0%
!! AATAACACGATTGGTTTCGA+AGG + chr1.3:29489460-29489479 None:intergenic 35.0%
!! TGTTAGTTGTTGTTTGCTTC+TGG - chr1.3:29486882-29486901 MS.gene53697:CDS 35.0%
!!! AGAATCTCCTTTTTTGTGCA+AGG + chr1.3:29489340-29489359 None:intergenic 35.0%
!!! GAATCTCCTTTTTTGTGCAA+GGG + chr1.3:29489339-29489358 None:intergenic 35.0%
!!! GAGAAGCGTACATTTTTAGT+TGG - chr1.3:29487032-29487051 MS.gene53697:CDS 35.0%
AAAGACCTAAGACCTCCAAA+AGG + chr1.3:29486442-29486461 None:intergenic 40.0%
AAATGATTGCAGGATCAGAG+AGG - chr1.3:29487927-29487946 MS.gene53697:intron 40.0%
AAGACCTAAGACCTCCAAAA+GGG + chr1.3:29486441-29486460 None:intergenic 40.0%
AAGGCTATAAATACCACCCT+TGG + chr1.3:29486243-29486262 None:intergenic 40.0%
AATCGCAGATCTAGCTATCT+GGG - chr1.3:29487067-29487086 MS.gene53697:CDS 40.0%
AATGATTGCAGGATCAGAGA+GGG - chr1.3:29487928-29487947 MS.gene53697:intron 40.0%
ACTTAGGCAGCAAGTAATAG+GGG - chr1.3:29486287-29486306 MS.gene53697:CDS 40.0%
AGGCTATAAATACCACCCTT+GGG + chr1.3:29486242-29486261 None:intergenic 40.0%
AGTTCAGAGACAAAGTTCGA+GGG - chr1.3:29486812-29486831 MS.gene53697:CDS 40.0%
ATCGTAATGCTCAGTATCAC+AGG - chr1.3:29488161-29488180 MS.gene53697:CDS 40.0%
ATGCGGACAAATGATTTCTC+AGG + chr1.3:29488676-29488695 None:intergenic 40.0%
CACAAAAACTATGAAGCTGC+TGG - chr1.3:29488706-29488725 MS.gene53697:intron 40.0%
CAGCTTGAGAAAGGAAAGAA+TGG - chr1.3:29489272-29489291 MS.gene53697:CDS 40.0%
CCAATATGAAGATAGCCACT+GGG + chr1.3:29487572-29487591 None:intergenic 40.0%
CGAATTTAGCCGGTTGAATA+TGG - chr1.3:29488222-29488241 MS.gene53697:intron 40.0%
CTAAGTAACCACAAACATGC+AGG + chr1.3:29486273-29486292 None:intergenic 40.0%
CTAGCTAGTTCATCTAACTC+AGG + chr1.3:29488943-29488962 None:intergenic 40.0%
CTGCATGTTTGTGGTTACTT+AGG - chr1.3:29486271-29486290 MS.gene53697:CDS 40.0%
CTTGAGTGAACCTTCAGTTT+GGG - chr1.3:29486617-29486636 MS.gene53697:intron 40.0%
GAGTGTAGACCATATTCAAC+CGG + chr1.3:29488234-29488253 None:intergenic 40.0%
GCTTAACCCTTGCACAAAAA+AGG - chr1.3:29489330-29489349 MS.gene53697:intron 40.0%
GGACAGGCAAAATCATAAGT+TGG + chr1.3:29488085-29488104 None:intergenic 40.0%
GGGATTGCAAATAACACGAT+TGG + chr1.3:29489469-29489488 None:intergenic 40.0%
GTTGATCACTGTTGTTGTAC+AGG - chr1.3:29488516-29488535 MS.gene53697:intron 40.0%
TACCCTATGCATAGACACTT+TGG - chr1.3:29489180-29489199 MS.gene53697:intron 40.0%
TAGTTCAGAGACAAAGTTCG+AGG - chr1.3:29486811-29486830 MS.gene53697:CDS 40.0%
TATGCACATGTACTCTCATC+AGG - chr1.3:29486966-29486985 MS.gene53697:CDS 40.0%
TCAGCAAACGAAAGCTTCTA+TGG - chr1.3:29488257-29488276 MS.gene53697:intron 40.0%
TCAGTATCACAGGATTCAAG+AGG - chr1.3:29488171-29488190 MS.gene53697:CDS 40.0%
TCCAATATGAAGATAGCCAC+TGG + chr1.3:29487573-29487592 None:intergenic 40.0%
TCTGATAACATTAAGGGAGG+AGG - chr1.3:29487476-29487495 MS.gene53697:CDS 40.0%
TGATCACTGTTGTTGTACAG+GGG - chr1.3:29488518-29488537 MS.gene53697:intron 40.0%
TGGAGAGAAAGGGATATTTC+AGG - chr1.3:29489413-29489432 MS.gene53697:CDS 40.0%
TTCACTTTATCCTTGACGAC+TGG + chr1.3:29487437-29487456 None:intergenic 40.0%
TTTGGAGGTCTTAGGTCTTT+AGG - chr1.3:29486442-29486461 MS.gene53697:CDS 40.0%
! ACTTTTCCAACTTCAGCATC+TGG + chr1.3:29487527-29487546 None:intergenic 40.0%
! AGGAAGTAACCTTGATGGAT+TGG - chr1.3:29488800-29488819 MS.gene53697:intron 40.0%
! AGTGGTGTTTTACATCCTGA+AGG - chr1.3:29488880-29488899 MS.gene53697:intron 40.0%
! CGAAGAAAAAGGTATGTGCT+TGG - chr1.3:29488995-29489014 MS.gene53697:intron 40.0%
! CTTTGTTTGCAGCTTGAGAA+AGG - chr1.3:29489263-29489282 MS.gene53697:CDS 40.0%
! GAACCAAAGTGTCTATGCAT+AGG + chr1.3:29489186-29489205 None:intergenic 40.0%
! GCTTCATAGTTTTTGTGCCT+AGG + chr1.3:29488703-29488722 None:intergenic 40.0%
! TTTTGTGCCTAGGTATGATG+CGG + chr1.3:29488693-29488712 None:intergenic 40.0%
!! GAAGTAACCTTGATGGATTG+GGG - chr1.3:29488802-29488821 MS.gene53697:intron 40.0%
!! GGAAGTAACCTTGATGGATT+GGG - chr1.3:29488801-29488820 MS.gene53697:intron 40.0%
!! GTGTTATTTGCAATCCCAGA+TGG - chr1.3:29489472-29489491 MS.gene53697:CDS 40.0%
!!! AGCAAGTAATAGGGGTGTTT+TGG - chr1.3:29486295-29486314 MS.gene53697:CDS 40.0%
!!! GCAAGTAATAGGGGTGTTTT+GGG - chr1.3:29486296-29486315 MS.gene53697:CDS 40.0%
!!! TAGGGGTGTTTTGGGTATTT+AGG - chr1.3:29486304-29486323 MS.gene53697:CDS 40.0%
!!! TTGTCTTTTAAGGCCCTGTT+TGG - chr1.3:29486006-29486025 MS.gene53697:intron 40.0%
ACATCCTGAAGGATCTGTGA+AGG - chr1.3:29488891-29488910 MS.gene53697:intron 45.0%
ACCAAGATGGGAATGTCACA+GGG - chr1.3:29488854-29488873 MS.gene53697:intron 45.0%
ACGAGCATCAACAAATGGAC+AGG + chr1.3:29488101-29488120 None:intergenic 45.0%
AGGTGAGGAAGTAACCTTGA+TGG - chr1.3:29488795-29488814 MS.gene53697:intron 45.0%
AGTATTGCAGCTGGAGAGAA+AGG - chr1.3:29489402-29489421 MS.gene53697:CDS 45.0%
ATGAAAAAGGAGAGAAGGGG+TGG - chr1.3:29487848-29487867 MS.gene53697:CDS 45.0%
ATGATTGCAGGATCAGAGAG+GGG - chr1.3:29487929-29487948 MS.gene53697:intron 45.0%
ATTTCTCAGGACCATCAGTG+AGG + chr1.3:29488663-29488682 None:intergenic 45.0%
CAAACATGCAGGCCCATAAA+AGG + chr1.3:29486262-29486281 None:intergenic 45.0%
CAATCGCAGATCTAGCTATC+TGG - chr1.3:29487066-29487085 MS.gene53697:CDS 45.0%
CACAGGATTCAAGAGGACAT+GGG - chr1.3:29488178-29488197 MS.gene53697:intron 45.0%
CAGCCAGTTTCATCAACTCA+GGG + chr1.3:29487775-29487794 None:intergenic 45.0%
CATCAACATATGCCTTACCC+TGG + chr1.3:29487811-29487830 None:intergenic 45.0%
CATTTGTCCGCATCATACCT+AGG - chr1.3:29488683-29488702 MS.gene53697:intron 45.0%
CCACAAAACTGAAGCTCACT+TGG - chr1.3:29488914-29488933 MS.gene53697:intron 45.0%
CCACATTTCTCTTCTCCAAC+GGG - chr1.3:29485738-29485757 MS.gene53697:intron 45.0%
CCCACATTTCTCTTCTCCAA+CGG - chr1.3:29485737-29485756 MS.gene53697:intron 45.0%
CCCAGTGGCTATCTTCATAT+TGG - chr1.3:29487569-29487588 MS.gene53697:CDS 45.0%
CCGTTGGAGAAGAGAAATGT+GGG + chr1.3:29485740-29485759 None:intergenic 45.0%
CCTTCACGAGCATCAACAAA+TGG + chr1.3:29488106-29488125 None:intergenic 45.0%
CGAGGGTGAGTGATTGTTTA+GGG - chr1.3:29486829-29486848 MS.gene53697:CDS 45.0%
CGTTGGAGAAGAGAAATGTG+GGG + chr1.3:29485739-29485758 None:intergenic 45.0%
CTGTAGTTCAAGGACCCAAT+AGG + chr1.3:29486656-29486675 None:intergenic 45.0%
CTTACGTAGTAGGGTCTGTT+TGG - chr1.3:29486059-29486078 MS.gene53697:intron 45.0%
CTTGCATATCCAACTTCCCA+CGG + chr1.3:29487970-29487989 None:intergenic 45.0%
GAAAGAGATGGGAAAGCTTG+AGG - chr1.3:29487270-29487289 MS.gene53697:CDS 45.0%
GAACAAAGGTGGTGTCTTGA+GGG - chr1.3:29486351-29486370 MS.gene53697:CDS 45.0%
GACCCAATAGGAGAGAAAGT+GGG + chr1.3:29486644-29486663 None:intergenic 45.0%
GATACTGAGCATTACGATCG+TGG + chr1.3:29488159-29488178 None:intergenic 45.0%
GATCACTGTTGTTGTACAGG+GGG - chr1.3:29488519-29488538 MS.gene53697:intron 45.0%
GATCTTCCAGATGCTGAAGT+TGG - chr1.3:29487518-29487537 MS.gene53697:CDS 45.0%
GCAAACAAAGCAAAGCAAGC+AGG + chr1.3:29489253-29489272 None:intergenic 45.0%
GCTTGAGTGAACCTTCAGTT+TGG - chr1.3:29486616-29486635 MS.gene53697:intron 45.0%
GGAAGATCTATCTCTACCGA+AGG + chr1.3:29487506-29487525 None:intergenic 45.0%
GTATTGCAGCTGGAGAGAAA+GGG - chr1.3:29489403-29489422 MS.gene53697:CDS 45.0%
GTCCCACTTTCTCTCCTATT+GGG - chr1.3:29486639-29486658 MS.gene53697:intron 45.0%
GTGGTATTCACTTGACCGAA+GGG + chr1.3:29488140-29488159 None:intergenic 45.0%
GTTGGAGAAGAGAAATGTGG+GGG + chr1.3:29485738-29485757 None:intergenic 45.0%
TACTTCCTCACCTGCTGATA+CGG + chr1.3:29488788-29488807 None:intergenic 45.0%
TATTTGCAATCCCAGATGGC+AGG - chr1.3:29489476-29489495 MS.gene53697:CDS 45.0%
TCACAGGATTCAAGAGGACA+TGG - chr1.3:29488177-29488196 MS.gene53697:intron 45.0%
TCAGCCAGTTTCATCAACTC+AGG + chr1.3:29487776-29487795 None:intergenic 45.0%
TCATGGAATGGGACAAGCTA+TGG - chr1.3:29488560-29488579 MS.gene53697:intron 45.0%
TCGAGGGTGAGTGATTGTTT+AGG - chr1.3:29486828-29486847 MS.gene53697:CDS 45.0%
TCTCTTTCCAGCACCTGAAA+AGG + chr1.3:29487258-29487277 None:intergenic 45.0%
TTGGGGAAATGCCGTAGTAA+AGG - chr1.3:29488819-29488838 MS.gene53697:intron 45.0%
TTTATGGGCCTGCATGTTTG+TGG - chr1.3:29486262-29486281 MS.gene53697:CDS 45.0%
TTTCTCAGGACCATCAGTGA+GGG + chr1.3:29488662-29488681 None:intergenic 45.0%
TTTGTGCAAGGGTTAAGCAC+AGG + chr1.3:29489328-29489347 None:intergenic 45.0%
! AAGGTATCACTCATGCCCTT+CGG - chr1.3:29488122-29488141 MS.gene53697:CDS 45.0%
! ACTAGCTAGCCTGACATTGA+TGG - chr1.3:29488954-29488973 MS.gene53697:intron 45.0%
! AGGCTTCTAGAAGCGAACAA+AGG - chr1.3:29486337-29486356 MS.gene53697:CDS 45.0%
! CATCTACGCTATGCCTTTTC+AGG - chr1.3:29487242-29487261 MS.gene53697:CDS 45.0%
! CCAAGTGAGCTTCAGTTTTG+TGG + chr1.3:29488917-29488936 None:intergenic 45.0%
! CCATTTGTTGATGCTCGTGA+AGG - chr1.3:29488103-29488122 MS.gene53697:CDS 45.0%
! CTGAAAAGGCATAGCGTAGA+TGG + chr1.3:29487244-29487263 None:intergenic 45.0%
! CTTCTAGAAGCGAACAAAGG+TGG - chr1.3:29486340-29486359 MS.gene53697:CDS 45.0%
!! AAAGCCCTTTTGGAGGTCTT+AGG - chr1.3:29486434-29486453 MS.gene53697:CDS 45.0%
!! CTTCCCTGAGTTGATGAAAC+TGG - chr1.3:29487769-29487788 MS.gene53697:CDS 45.0%
!! GGATCACGGAGTGATTTGTT+TGG + chr1.3:29487995-29488014 None:intergenic 45.0%
!! TCAGGCCCTGCTTTTGAAAA+TGG - chr1.3:29486984-29487003 MS.gene53697:CDS 45.0%
!! TTCAGGTGCTGGAAAGAGAT+GGG - chr1.3:29487259-29487278 MS.gene53697:CDS 45.0%
!! TTTCAGGTGCTGGAAAGAGA+TGG - chr1.3:29487258-29487277 MS.gene53697:CDS 45.0%
!!! TCTTTTGGGTTGGTTGCAGA+TGG + chr1.3:29487410-29487429 None:intergenic 45.0%
AAAAGACCAGCCAGTCGTCA+AGG - chr1.3:29487424-29487443 MS.gene53697:CDS 50.0%
AAACGCGCCTTTGAGCCTTA+TGG - chr1.3:29486374-29486393 MS.gene53697:CDS 50.0%
ACCCTGTGACATTCCCATCT+TGG + chr1.3:29488858-29488877 None:intergenic 50.0%
ACCCTTGGGAGCAATCTCAA+AGG + chr1.3:29486228-29486247 None:intergenic 50.0%
AGAAGGGCCATAAGGCTCAA+AGG + chr1.3:29486384-29486403 None:intergenic 50.0%
ATGGACACGTGAATTGCTCG+TGG + chr1.3:29489074-29489093 None:intergenic 50.0%
CCACGATTTCCTACAGTGCA+AGG - chr1.3:29488316-29488335 MS.gene53697:intron 50.0%
CCCGTTGGAGAAGAGAAATG+TGG + chr1.3:29485741-29485760 None:intergenic 50.0%
CCTTGCACTGTAGGAAATCG+TGG + chr1.3:29488319-29488338 None:intergenic 50.0%
CGAACAAAGGTGGTGTCTTG+AGG - chr1.3:29486350-29486369 MS.gene53697:CDS 50.0%
CGCACAATTCCTTGCACTGT+AGG + chr1.3:29488328-29488347 None:intergenic 50.0%
CGTAACAGGTCGAAATTGCG+TGG - chr1.3:29485831-29485850 MS.gene53697:CDS 50.0%
CGTGGTATTCACTTGACCGA+AGG + chr1.3:29488141-29488160 None:intergenic 50.0%
CTTTATCCTTGACGACTGGC+TGG + chr1.3:29487433-29487452 None:intergenic 50.0%
GAAAGTGGGACCCAAACTGA+AGG + chr1.3:29486630-29486649 None:intergenic 50.0%
GACCAAGATGGGAATGTCAC+AGG - chr1.3:29488853-29488872 MS.gene53697:intron 50.0%
GCTTGCAGTGTTATGTCCGT+GGG - chr1.3:29487951-29487970 MS.gene53697:intron 50.0%
GGACCCAATAGGAGAGAAAG+TGG + chr1.3:29486645-29486664 None:intergenic 50.0%
GGCATTTCCCCAATCCATCA+AGG + chr1.3:29488812-29488831 None:intergenic 50.0%
GGGAATGTCACAGGGTTAAG+TGG - chr1.3:29488862-29488881 MS.gene53697:intron 50.0%
GGTATTTAGGCGCGTTCTAG+AGG - chr1.3:29486317-29486336 MS.gene53697:CDS 50.0%
GGTCCCACTTTCTCTCCTAT+TGG - chr1.3:29486638-29486657 MS.gene53697:intron 50.0%
GTGCAAGGAATTGTGCGTAG+AGG - chr1.3:29488331-29488350 MS.gene53697:intron 50.0%
GTGTTATGTCCGTGGGAAGT+TGG - chr1.3:29487958-29487977 MS.gene53697:intron 50.0%
TGAAGAAAATCCGGCGAGCT+TGG + chr1.3:29485684-29485703 None:intergenic 50.0%
TGAAGATAGCCACTGGGTTC+AGG + chr1.3:29487566-29487585 None:intergenic 50.0%
TGCTGAGCGATACAAAGGTC+AGG - chr1.3:29487625-29487644 MS.gene53697:CDS 50.0%
TGTATGTCCCAGACACACTG+CGG - chr1.3:29488609-29488628 MS.gene53697:intron 50.0%
! CAGTGTGTCTGGGACATACA+GGG + chr1.3:29488609-29488628 None:intergenic 50.0%
! GGAGGGTCTAAAAGCCCTTT+TGG - chr1.3:29486424-29486443 MS.gene53697:CDS 50.0%
! GGGTCTAAAAGCCCTTTTGG+AGG - chr1.3:29486427-29486446 MS.gene53697:CDS 50.0%
! TTTGAGATTGCTCCCAAGGG+TGG - chr1.3:29486227-29486246 MS.gene53697:CDS 50.0%
! TTTGAGCCTTATGGCCCTTC+TGG - chr1.3:29486383-29486402 MS.gene53697:CDS 50.0%
!! ACACGATTGGTTTCGAAGGC+CGG + chr1.3:29489456-29489475 None:intergenic 50.0%
!! GCCTTTGAGATTGCTCCCAA+GGG - chr1.3:29486224-29486243 MS.gene53697:CDS 50.0%
!! TGCCTTTGAGATTGCTCCCA+AGG - chr1.3:29486223-29486242 MS.gene53697:CDS 50.0%
!!! TGACGACTGGCTGGTCTTTT+GGG + chr1.3:29487424-29487443 None:intergenic 50.0%
!!! TTGACGACTGGCTGGTCTTT+TGG + chr1.3:29487425-29487444 None:intergenic 50.0%
AAATCCGGCGAGCTTGGATG+CGG + chr1.3:29485678-29485697 None:intergenic 55.0%
AGAAATGTGGGGGCGGAATC+AGG + chr1.3:29485728-29485747 None:intergenic 55.0%
AGAGTCCGTATCAGCAGGTG+AGG - chr1.3:29488780-29488799 MS.gene53697:intron 55.0%
ATGTCTGCTGCCTGCCATCT+GGG + chr1.3:29489489-29489508 None:intergenic 55.0%
CAGACACACTGCGGTCATTG+CGG - chr1.3:29488618-29488637 MS.gene53697:intron 55.0%
CGATTTGCACCTGAACCCAG+TGG - chr1.3:29487554-29487573 MS.gene53697:CDS 55.0%
GAGAAAGGGAACGTACCCGT+TGG + chr1.3:29485756-29485775 None:intergenic 55.0%
GATGCGGCGATTACCGCTAA+CGG + chr1.3:29485662-29485681 None:intergenic 55.0%
GCAATGACCGCAGTGTGTCT+GGG + chr1.3:29488619-29488638 None:intergenic 55.0%
GCAGATCTAGCTATCTGGGC+AGG - chr1.3:29487071-29487090 MS.gene53697:CDS 55.0%
GGAGAAGAGAAATGTGGGGG+CGG + chr1.3:29485735-29485754 None:intergenic 55.0%
GGCTTGCAGTGTTATGTCCG+TGG - chr1.3:29487950-29487969 MS.gene53697:intron 55.0%
GGTGTGATGTACCGTTCGTC+CGG - chr1.3:29489434-29489453 MS.gene53697:CDS 55.0%
GTGGCCTTCACAGATCCTTC+AGG + chr1.3:29488898-29488917 None:intergenic 55.0%
! AGCCTTATGGCCCTTCTGGA+GGG - chr1.3:29486387-29486406 MS.gene53697:CDS 55.0%
! GCAGTGTGTCTGGGACATAC+AGG + chr1.3:29488610-29488629 None:intergenic 55.0%
! TAAGGGAGGAGGCATGCCTT+CGG - chr1.3:29487487-29487506 MS.gene53697:CDS 55.0%
!! AGGAGGAAGGGAGGTGTCAA+TGG + chr1.3:29485708-29485727 None:intergenic 55.0%
!! GCGTGGAGAAGTATTGCAGC+TGG - chr1.3:29489393-29489412 MS.gene53697:CDS 55.0%
!!! CGCTATGCCTTTTCAGGTGC+TGG - chr1.3:29487248-29487267 MS.gene53697:CDS 55.0%
!!! GACTGGCTGGTCTTTTGGGT+TGG + chr1.3:29487420-29487439 None:intergenic 55.0%
AATGTGGGGGCGGAATCAGG+AGG + chr1.3:29485725-29485744 None:intergenic 60.0%
CGCAATGACCGCAGTGTGTC+TGG + chr1.3:29488620-29488639 None:intergenic 60.0%
GACGCAGAGTCCGTATCAGC+AGG - chr1.3:29488775-29488794 MS.gene53697:intron 60.0%
GATGTCTGCTGCCTGCCATC+TGG + chr1.3:29489490-29489509 None:intergenic 60.0%
GATTACCGCTAACGGTGGCG+TGG + chr1.3:29485654-29485673 None:intergenic 60.0%
GCTATCTGGGCAGGTCTTGC+AGG - chr1.3:29487080-29487099 MS.gene53697:CDS 60.0%
GGTTTCGAAGGCCGGACGAA+CGG + chr1.3:29489448-29489467 None:intergenic 60.0%
! GAGCCTTATGGCCCTTCTGG+AGG - chr1.3:29486386-29486405 MS.gene53697:CDS 60.0%
AGACCTCAGCGCCCTCCAGA+AGG + chr1.3:29486401-29486420 None:intergenic 65.0%
ATCGCCGCATCCAAGCTCGC+CGG - chr1.3:29485671-29485690 MS.gene53697:CDS 65.0%
CGCCCTCCAGAAGGGCCATA+AGG + chr1.3:29486392-29486411 None:intergenic 65.0%
CGTGGCGGCGGGGAAAGAAA+GGG + chr1.3:29485636-29485655 None:intergenic 65.0%
GACCTCAGCGCCCTCCAGAA+GGG + chr1.3:29486400-29486419 None:intergenic 65.0%
GCGGCGATTACCGCTAACGG+TGG + chr1.3:29485659-29485678 None:intergenic 65.0%
GGCGGAATCAGGAGGAAGGG+AGG + chr1.3:29485717-29485736 None:intergenic 65.0%
GGGGGCGGAATCAGGAGGAA+GGG + chr1.3:29485720-29485739 None:intergenic 65.0%
TACCGCTAACGGTGGCGTGG+CGG + chr1.3:29485651-29485670 None:intergenic 65.0%
TGGGGGCGGAATCAGGAGGA+AGG + chr1.3:29485721-29485740 None:intergenic 65.0%
!! TGGAGGGCGCTGAGGTCTCT+GGG - chr1.3:29486403-29486422 MS.gene53697:CDS 65.0%
GCGTGGCGGCGGGGAAAGAA+AGG + chr1.3:29485637-29485656 None:intergenic 70.0%
!! AGGGCGCTGAGGTCTCTGGG+AGG - chr1.3:29486406-29486425 MS.gene53697:CDS 70.0%
!! CTGGAGGGCGCTGAGGTCTC+TGG - chr1.3:29486402-29486421 MS.gene53697:CDS 70.0%
!! GGGCGCTGAGGTCTCTGGGA+GGG - chr1.3:29486407-29486426 MS.gene53697:CDS 70.0%
CGCCGCCACGCCACCGTTAG+CGG - chr1.3:29485646-29485665 MS.gene53697:CDS 75.0%
CGCTAACGGTGGCGTGGCGG+CGG + chr1.3:29485648-29485667 None:intergenic 75.0%
CTAACGGTGGCGTGGCGGCG+GGG + chr1.3:29485646-29485665 None:intergenic 75.0%
GCTAACGGTGGCGTGGCGGC+GGG + chr1.3:29485647-29485666 None:intergenic 75.0%
!! GGCCCTTCTGGAGGGCGCTG+AGG - chr1.3:29486395-29486414 MS.gene53697:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 29485620 29489519 29485620 ID=MS.gene53697
chr1.3 mRNA 29485620 29489519 29485620 ID=MS.gene53697.t1;Parent=MS.gene53697
chr1.3 exon 29489380 29489519 29489380 ID=MS.gene53697.t1.exon1;Parent=MS.gene53697.t1
chr1.3 CDS 29489380 29489519 29489380 ID=cds.MS.gene53697.t1;Parent=MS.gene53697.t1
chr1.3 exon 29489204 29489300 29489204 ID=MS.gene53697.t1.exon2;Parent=MS.gene53697.t1
chr1.3 CDS 29489204 29489300 29489204 ID=cds.MS.gene53697.t1;Parent=MS.gene53697.t1
chr1.3 exon 29488038 29488191 29488038 ID=MS.gene53697.t1.exon3;Parent=MS.gene53697.t1
chr1.3 CDS 29488038 29488191 29488038 ID=cds.MS.gene53697.t1;Parent=MS.gene53697.t1
chr1.3 exon 29486746 29487875 29486746 ID=MS.gene53697.t1.exon4;Parent=MS.gene53697.t1
chr1.3 CDS 29486746 29487875 29486746 ID=cds.MS.gene53697.t1;Parent=MS.gene53697.t1
chr1.3 exon 29486134 29486601 29486134 ID=MS.gene53697.t1.exon5;Parent=MS.gene53697.t1
chr1.3 CDS 29486134 29486601 29486134 ID=cds.MS.gene53697.t1;Parent=MS.gene53697.t1
chr1.3 exon 29485812 29485864 29485812 ID=MS.gene53697.t1.exon6;Parent=MS.gene53697.t1
chr1.3 CDS 29485812 29485864 29485812 ID=cds.MS.gene53697.t1;Parent=MS.gene53697.t1
chr1.3 exon 29485620 29485704 29485620 ID=MS.gene53697.t1.exon7;Parent=MS.gene53697.t1
chr1.3 CDS 29485620 29485704 29485620 ID=cds.MS.gene53697.t1;Parent=MS.gene53697.t1
Gene Sequence

>MS.gene53697

ATGGATATCAAAACCCTTTCTTTCCCCGCCGCCACGCCACCGTTAGCGGTAATCGCCGCATCCAAGCTCGCCGGATTTTCTTCATCCATTGACACCTCCCTTCCTCCTGATTCCGCCCCCACATTTCTCTTCTCCAACGGGTACGTTCCCTTTCTCATATCTCTTCACACTTTTCCTCGTTTCTATGATCTATCAATAATTTGCAATTATTCGTAACAGGTCGAAATTGCGTGGACCATTTGTTCTTCTGCGTTACATTGGAAGAACTGCAACTCTTCCTAATTTCTATGGCCAAAATGTTTTTCAAACTAGCCAGGTTATTTTTTCTGATATATAATAGCATAAGATGTTTTAGTGAAATTATTGTTCACATTGAATAAGTGATGTTGTCTTTTAAGGCCCTGTTTGGTTAAACAACTTATTTGCAGCTTATAAAACACTTACGTAGTAGGGTCTGTTTGGTAAGACATAATTTTGAGTTTATAGCTTGGTATTATAAGTTAGTTTATAAGCTATTTCTACAACAAAAGTGTACTTGCAAAAAGCACAATAAGGAATACTAGGGTTTAGTATCGTATTCTAGGGTTTAGACTGATTATTGGATGCCTTTGAGATTGCTCCCAAGGGTGGTATTTATAGCCTTTTATGGGCCTGCATGTTTGTGGTTACTTAGGCAGCAAGTAATAGGGGTGTTTTGGGTATTTAGGCGCGTTCTAGAGGCTTCTAGAAGCGAACAAAGGTGGTGTCTTGAGGGAAACGCGCCTTTGAGCCTTATGGCCCTTCTGGAGGGCGCTGAGGTCTCTGGGAGGGTCTAAAAGCCCTTTTGGAGGTCTTAGGTCTTTAGGAATATATTGACGGTTCAAAAAGATAAAATGTAGTTAAATTGTTTTCATAAGATAACTTGGAGAACGTATGAAGATAAGCTAAGCTGTTAAAAGCTTATGAAAAATTTCATGAACTTTTTTCATAAGTTCTTCCAAACAAGCAGTAAATATTGCTTGAGTGAACCTTCAGTTTGGGTCCCACTTTCTCTCCTATTGGGTCCTTGAACTACAGAAATATCATAACCAGTCTTGAAACTATTCTTGATAGTTAGTCCTTGGTTTCTTTCAAAATAGGAGAGTGATAGTTTAAGGTCCCAAATTGATTGATTGATTGACAATAGTTTAGGGTTTGTTAATTAGAATTCTATAGTTCAGAGACAAAGTTCGAGGGTGAGTGATTGTTTAGGGATCAAATTGAAGGTTTGCTCGCTTTTCTTTTGTTAGTTGTTGTTTGCTTCTGGTTGTTAGCTCCGTCATTCAATTGTTGTTTCTTTGACTTTTCAGATTGATCAATGGCTAGAGTATGCACATGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTAATACATTATCAATCGCAGATCTAGCTATCTGGGCAGGTCTTGCAGGTAAATATATTTTTATGATACCTATACCTATTCATCTTCACCTGTGATACTACTACTACTAAATCTCTTTTAAACAACCTTGTTTAGTGATTGTTTCTCTTCAACCTTAATCTATGAAACTTGATGGTTCATGTCATCTCCATCTACGCTATGCCTTTTCAGGTGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCATTAATGGCAGAACATGGTACTGCATTAAATGAAGTCACATCAACATATATTGGCAAAAAAGGATCGGGAGAGCCATCTGCAACCAACCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTGAAGAATGTGAATGGGGATTTTTCTGATAACATTAAGGGAGGAGGCATGCCTTCGGTAGAGATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCATATTGGACACGCAAAAGCAGCTCTGTTGAACAAGTATTTTGCTGAGCGATACAAAGGTCAGGTTATTTTGCGTTTTGATGATACAAATCCTGCTAAAGAAAAAAAAGAATTTGTGGACAATTTGATAAAAGATGTTAAGATGTTGGGTGTCAAATATGAAAAAATTACATATACATCAGATTACTTCCCTGAGTTGATGAAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCATATGTTGATGACACTCCACGTTTACAAATGAAAAAGGAGAGAAGGGGTGGCATAGAATCTAAATGCAGAAACCATAGTATAGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCTTGCAGTGTTATGTCCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAATCCAAAGCCTCATCATAGAATTGAAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCCTGTCCATTTGTTGATGCTCGTGAAGGTATCACTCATGCCCTTCGGTCAAGTGAATACCACGATCGTAATGCTCAGTATCACAGGATTCAAGAGGACATGGGAGTTAAAAAAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTCTATGGTTTGTTGAAAAGAGCAAAGTTGAATCATGGGATGATCCACGATTTCCTACAGTGCAAGGAATTGTGCGTAGAGGCTTGAAAATTGAAGCGCTAATCCAATTTATTTTTGAACAAGTATGTACAAGATTTTGCTTTCTTTTATACATCTAAAAGAAAATATGCACTTGAATATAGCGTTTAGTTGTCATACTCTTTTCTTTTTTTTTACTTTTTTGTTTTATATCCATGCTTAAAATGTTGATCACTGTTGTTGTACAGGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTATGGACCATCAATAAAAAAATTATTGACCCTGTATGTCCCAGACACACTGCGGTCATTGCGGATAGACGTGTATTATTAACCCTCACTGATGGTCCTGAGAAATCATTTGTCCGCATCATACCTAGGCACAAAAACTATGAAGCTGCTGGGAATAAAGCTACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCCGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCGTAGTAAAGGAAATAGATAAGGACCAAGATGGGAATGTCACAGGGTTAAGTGGTGTTTTACATCCTGAAGGATCTGTGAAGGCCACAAAACTGAAGCTCACTTGGCTACCTGAGTTAGATGAACTAGCTAGCCTGACATTGATGGAGTTTGATTACCTCATTACGAAGAAAAAGGTATGTGCTTGGCTTCTGTTTGATTCTGTCATTAATAAAGGAAAATATATAATATGTGAACATTTCCACGAGCAATTCACGTGTCCATACGATTTCTACTGACACAACCAATCATGAACCTTTCATGAACCTTCCATATATGTTATAAGAATTTGTTAACGGCTTAAAAGTGCATACCCTATGCATAGACACTTTGGTTCAGTGTTCATTTCATCTACTCATACTTAATATACATCAAATCAAACCTGCTTGCTTTGCTTTGTTTGCAGCTTGAGAAAGGAAAGAATGGGAAAGAAGAGAATATCGATGATGTGCTTAACCTGTGCTTAACCCTTGCACAAAAAAGGAGATTCTAGCATATGGAGAATCCAATATGCGAAATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCGTTCGTCCGGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA
Protein sequence

>MS.gene53697.t1

MDIKTLSFPAATPPLAVIAASKLAGFSSSIDTSLPPDSAPTFLFSNGSKLRGPFVLLRYIGRTATLPNFYGQNVFQTSQIDQWLEYAHVLSSGPAFENGCKYIDDYLEKRTFLVGNTLSIADLAIWAGLAGAGKRWESLRKSKKYQNLARWYNSLMAEHGTALNEVTSTYIGKKGSGEPSATNPKDQPVVKDKVKNVNGDFSDNIKGGGMPSVEIDLPDAEVGKVRLRFAPEPSGYLHIGHAKAALLNKYFAERYKGQVILRFDDTNPAKEKKEFVDNLIKDVKMLGVKYEKITYTSDYFPELMKLAEKLISQGKAYVDDTPRLQMKKERRGGIESKCRNHSIEENLKLWKEMIAGSERGLQCYVRGKLDMQDPNKSLRDPVYYRCNPKPHHRIEIGSKYKVYPTYDFACPFVDAREGITHALRSSEYHDRNAQYHRIQEDMGVKKVLIYEFSRLNMVYTLLSKRKLLWFVEKSKVESWDDPRFPTVQGIVRRGLKIEALIQFIFEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADRRVLLTLTDGPEKSFVRIIPRHKNYEAAGNKATTYTKRIWIDYADAESVSAGEEVTLMDWGNAVVKEIDKDQDGNVTGLSGVLHPEGSVKATKLKLTWLPELDELASLTLMEFDYLITKKKLEKGKNGKEENIDDVLNLCDVPFVRPSKPIVLFAIPDGRQQTSLK