Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53927.t1 | XP_003598092.2 | 98.5 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 1.80E-65 | 258.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53927.t1 | G7J0A0 | 98.5 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 1.3e-65 | 258.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene53927 | 0.810005 | 1.43E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene53927 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene53927 | 0.812205 | 4.77E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene53927 | 0.803408 | 3.54E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene53927 | 0.800853 | 1.19E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene53927 | 0.81431 | 1.64E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene53927 | 0.814179 | 1.76E-51 | -1.69E-46 |
| MS.gene050780 | MS.gene53927 | 0.805586 | 1.24E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene53927 | 0.830749 | 2.46E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene53927 | 0.8169 | 4.36E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene53927 | 0.817933 | 2.55E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene53927 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene53927 | 0.805475 | 1.31E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene53927 | 0.818822 | 1.60E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene53927 | 0.834988 | 2.18E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene53927 | 0.820382 | 7.07E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene53927 | 0.827769 | 1.30E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene53927 | 0.801831 | 7.48E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene53927 | 0.810685 | 1.02E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene53927 | 0.8305 | 2.84E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene53927 | 0.823635 | 1.25E-53 | -1.69E-46 |
| MS.gene058146 | MS.gene53927 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene53927 | 0.81954 | 1.10E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene53927 | 0.811994 | 5.30E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene53927 | 0.801545 | 8.56E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene53927 | 0.813281 | 2.77E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene53927 | 0.816442 | 5.52E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53927.t1 | MTR_3g006190 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 1.14e-91 | 263 |
| MS.gene53927.t1 | MTR_4g030060 | 68.750 | 128 | 40 | 0 | 6 | 133 | 1 | 128 | 2.08e-61 | 185 |
| MS.gene53927.t1 | MTR_4g030060 | 68.800 | 125 | 39 | 0 | 6 | 130 | 1 | 125 | 3.19e-59 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53927.t1 | AT1G33490 | 74.615 | 130 | 33 | 0 | 1 | 130 | 1 | 130 | 2.73e-67 | 200 |
| MS.gene53927.t1 | AT1G33490 | 73.846 | 130 | 34 | 0 | 1 | 130 | 1 | 130 | 2.00e-66 | 199 |
| MS.gene53927.t1 | AT4G10140 | 70.000 | 130 | 39 | 0 | 1 | 130 | 1 | 130 | 4.92e-63 | 191 |
| MS.gene53927.t1 | AT1G33490 | 76.136 | 88 | 21 | 0 | 43 | 130 | 1 | 88 | 6.93e-44 | 140 |
Find 36 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATGCTCACGAACTTTA+TGG | 0.165738 | 3.2:-952739 | MS.gene53927:CDS |
| TTTAAAGCATCAGATGTTAA+AGG | 0.291346 | 3.2:+951983 | None:intergenic |
| GCAGAGAAAGCCAACTGATT+TGG | 0.316448 | 3.2:+953603 | None:intergenic |
| TTGGCTTTCTCTGCTGCTCT+TGG | 0.354022 | 3.2:-953594 | MS.gene53927:CDS |
| TTAAAGCATCAGATGTTAAA+GGG | 0.367451 | 3.2:+951984 | None:intergenic |
| GCTTTAAAGAAAGTTCTTAC+TGG | 0.374819 | 3.2:-951968 | MS.gene53927:CDS |
| GCATATTACCTCAACTCTAT+TGG | 0.377682 | 3.2:+952711 | None:intergenic |
| GCTGCTCTTGGCATTACATT+GGG | 0.408552 | 3.2:-953582 | MS.gene53927:CDS |
| CGCTTCGGTGAATTTATGTC+TGG | 0.418134 | 3.2:-952019 | MS.gene53927:CDS |
| TGCTGCTCTTGGCATTACAT+TGG | 0.419462 | 3.2:-953583 | MS.gene53927:CDS |
| ATTGTTCCGTTTCTACGCTT+CGG | 0.434543 | 3.2:-952034 | MS.gene53927:CDS |
| CTCTTGTTTCCATTCTTCAC+AGG | 0.437303 | 3.2:-954539 | MS.gene53927:intron |
| GGAAGATGGCTATTACCAAT+TGG | 0.470067 | 3.2:-954584 | MS.gene53927:CDS |
| AATTACAACATACCACATAT+AGG | 0.470933 | 3.2:+953552 | None:intergenic |
| TTGGGAGTATTTCCTATATG+TGG | 0.488852 | 3.2:-953564 | MS.gene53927:intron |
| TTCGGTGAATTTATGTCTGG+CGG | 0.488963 | 3.2:-952016 | MS.gene53927:CDS |
| AGGAAAATATTATGGTATAG+TGG | 0.490310 | 3.2:+951898 | None:intergenic |
| AATTCACCGAAGCGTAGAAA+CGG | 0.492649 | 3.2:+952028 | None:intergenic |
| TGAAGAGTACCTGTGAAGAA+TGG | 0.505109 | 3.2:+954530 | None:intergenic |
| GGAATGGCTATTGCATTGCT+TGG | 0.517080 | 3.2:-952783 | MS.gene53927:CDS |
| CACTGTATTCCTCTGCGGAA+TGG | 0.522128 | 3.2:-952799 | MS.gene53927:CDS |
| TTTGAACGAAGATGGCGAAT+GGG | 0.528659 | 3.2:-954605 | None:intergenic |
| TCGGTGAATTTATGTCTGGC+GGG | 0.529549 | 3.2:-952015 | MS.gene53927:CDS |
| GAAGATGGCGAATGGGAAGA+TGG | 0.532129 | 3.2:-954598 | None:intergenic |
| CTTTGAACGAAGATGGCGAA+TGG | 0.546126 | 3.2:-954606 | None:intergenic |
| AAGTTCGTGAGCATCATAGT+TGG | 0.557950 | 3.2:+952744 | None:intergenic |
| TCAGATGTTAAAGGGAAATG+AGG | 0.588588 | 3.2:+951992 | None:intergenic |
| AGGAGCTGAACCAAATCAGT+TGG | 0.589478 | 3.2:-953613 | MS.gene53927:CDS |
| TGGCGACGCCAATAGAGTTG+AGG | 0.614691 | 3.2:-952719 | MS.gene53927:intron |
| GTATAGTGGCACCTACCGCA+TGG | 0.620726 | 3.2:+951912 | None:intergenic |
| CTGTGAAGAATGGAAACAAG+AGG | 0.624294 | 3.2:+954540 | None:intergenic |
| TTAAGCGTTGTCCATGCGGT+AGG | 0.625034 | 3.2:-951923 | MS.gene53927:CDS |
| CATATTAAGCGTTGTCCATG+CGG | 0.628787 | 3.2:-951927 | MS.gene53927:CDS |
| TACTGGTCAAGCTTCACACG+AGG | 0.668132 | 3.2:-951951 | MS.gene53927:CDS |
| ATGCAATAGCCATTCCGCAG+AGG | 0.697698 | 3.2:+952790 | None:intergenic |
| GGTGTCACTGTATTCCTCTG+CGG | 0.703627 | 3.2:-952804 | MS.gene53927:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGATAGTTTAATTATT+TGG | - | chr3.2:954432-954451 | MS.gene53927:intron | 10.0% |
| !!! | TTTTTTTTTCTTTATATGAT+TGG | - | chr3.2:953084-953103 | MS.gene53927:intron | 10.0% |
| !! | AAAGAAAAAAAAAAACAAAC+TGG | + | chr3.2:953077-953096 | None:intergenic | 15.0% |
| !!! | AAATTATTTTGATTGTAACA+TGG | + | chr3.2:953889-953908 | None:intergenic | 15.0% |
| !!! | AATTTTATTTCTGTAATGAT+TGG | - | chr3.2:952062-952081 | MS.gene53927:intron | 15.0% |
| !!! | TTTTGAGTTTACATTATATA+TGG | - | chr3.2:954229-954248 | MS.gene53927:intron | 15.0% |
| !! | ATATATATCCAGGAAATTAT+GGG | + | chr3.2:952684-952703 | None:intergenic | 20.0% |
| !! | ATTGAATTACAGTTATCTTT+AGG | + | chr3.2:952847-952866 | None:intergenic | 20.0% |
| !! | TCATGAAATTAAGCTTAAAA+AGG | + | chr3.2:953214-953233 | None:intergenic | 20.0% |
| !! | TTACAATAACAAACAAATAG+TGG | + | chr3.2:952023-952042 | None:intergenic | 20.0% |
| !! | TTAGATATGAAATGTCTTTA+TGG | - | chr3.2:952783-952802 | MS.gene53927:CDS | 20.0% |
| !!! | ATAATCAAAGTCAGTTTTAA+AGG | + | chr3.2:952149-952168 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATGTTTTGTT+CGG | - | chr3.2:952366-952385 | MS.gene53927:intron | 20.0% |
| !!! | TTATTTTAGCATATATATCC+AGG | + | chr3.2:952694-952713 | None:intergenic | 20.0% |
| !!! | TTCTTTGAAAAAAGTGATTT+TGG | - | chr3.2:952223-952242 | MS.gene53927:intron | 20.0% |
| !!! | TTTTCTTAGATTTTCCTAAT+TGG | + | chr3.2:954065-954084 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGATAGAGAACTA+TGG | - | chr3.2:954136-954155 | MS.gene53927:intron | 20.0% |
| ! | AAGCTAAAGTGATTTATGTT+TGG | + | chr3.2:952522-952541 | None:intergenic | 25.0% |
| ! | AATTACAACATACCACATAT+AGG | + | chr3.2:952952-952971 | None:intergenic | 25.0% |
| ! | CATATATATCCAGGAAATTA+TGG | + | chr3.2:952685-952704 | None:intergenic | 25.0% |
| ! | TATATGGATGTGAAATATGT+CGG | - | chr3.2:953630-953649 | MS.gene53927:intron | 25.0% |
| ! | TCTGCAATATGTTAAATATG+AGG | - | chr3.2:953657-953676 | MS.gene53927:intron | 25.0% |
| ! | TCTTTATATGATTGGACATT+GGG | - | chr3.2:953092-953111 | MS.gene53927:intron | 25.0% |
| ! | TGATATCAAGCATAAATAAG+AGG | + | chr3.2:952734-952753 | None:intergenic | 25.0% |
| ! | TGGTTAATGATTATGCTAAA+TGG | + | chr3.2:953057-953076 | None:intergenic | 25.0% |
| ! | TTCTAATTTAATTGCATCCA+AGG | - | chr3.2:953992-954011 | MS.gene53927:intron | 25.0% |
| ! | TTCTTTATATGATTGGACAT+TGG | - | chr3.2:953091-953110 | MS.gene53927:intron | 25.0% |
| !! | TAAAACTGACTTTGATTATG+AGG | - | chr3.2:952150-952169 | MS.gene53927:intron | 25.0% |
| !! | TGTTTGTAAAAGTGTATGTT+TGG | - | chr3.2:952299-952318 | MS.gene53927:intron | 25.0% |
| !! | TTAAAGCATCAGATGTTAAA+GGG | + | chr3.2:954520-954539 | None:intergenic | 25.0% |
| !! | TTTAAAGCATCAGATGTTAA+AGG | + | chr3.2:954521-954540 | None:intergenic | 25.0% |
| !! | TTTTTGTTCATGCTATAAGT+GGG | + | chr3.2:953260-953279 | None:intergenic | 25.0% |
| !!! | AAGTGATTTTGGTATCAAAA+AGG | - | chr3.2:952234-952253 | MS.gene53927:intron | 25.0% |
| !!! | AATTTTGGTTAATCCAAAAG+TGG | + | chr3.2:952327-952346 | None:intergenic | 25.0% |
| !!! | AGTGATTTTGGTATCAAAAA+GGG | - | chr3.2:952235-952254 | MS.gene53927:intron | 25.0% |
| !!! | ATTTTGCTATGTTTTTTCAG+AGG | - | chr3.2:952868-952887 | MS.gene53927:intron | 25.0% |
| !!! | ATTTTGGTTAATCCAAAAGT+GGG | + | chr3.2:952326-952345 | None:intergenic | 25.0% |
| AAAAGAGTTGTAACTGTGTA+CGG | - | chr3.2:953510-953529 | MS.gene53927:intron | 30.0% | |
| AACTATACCGTCATTTATGT+AGG | - | chr3.2:952990-953009 | MS.gene53927:intron | 30.0% | |
| AATGTAAACTCAAAACTCCT+AGG | + | chr3.2:954224-954243 | None:intergenic | 30.0% | |
| ACTTTGATTATGAGGTTTAG+GGG | - | chr3.2:952158-952177 | MS.gene53927:intron | 30.0% | |
| AGTGATTTATGTTTGGACTT+TGG | + | chr3.2:952515-952534 | None:intergenic | 30.0% | |
| ATAAATGACGGTATAGTTCA+AGG | + | chr3.2:952988-953007 | None:intergenic | 30.0% | |
| ATTACGATTCACAAAGAGAA+TGG | + | chr3.2:953850-953869 | None:intergenic | 30.0% | |
| CTTCCATTTGTTCTACTTAT+CGG | + | chr3.2:954037-954056 | None:intergenic | 30.0% | |
| GAATCATACAATGTCATAAC+TGG | + | chr3.2:953383-953402 | None:intergenic | 30.0% | |
| GACTTTGATTATGAGGTTTA+GGG | - | chr3.2:952157-952176 | MS.gene53927:intron | 30.0% | |
| GGTTATATGTGATCTGTTTA+TGG | - | chr3.2:952083-952102 | MS.gene53927:intron | 30.0% | |
| TAAGTGAAAGAAAGTAAGTG+CGG | - | chr3.2:953581-953600 | MS.gene53927:CDS | 30.0% | |
| TAATTTAATTGCATCCAAGG+AGG | - | chr3.2:953995-954014 | MS.gene53927:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr3.2:953118-953137 | None:intergenic | 30.0% | |
| TGACTTTGATTATGAGGTTT+AGG | - | chr3.2:952156-952175 | MS.gene53927:intron | 30.0% | |
| TGCAAATACTAAACAAGACA+TGG | + | chr3.2:953033-953052 | None:intergenic | 30.0% | |
| ! | AAATTTTTCTTAGCTGTGGT+TGG | + | chr3.2:953412-953431 | None:intergenic | 30.0% |
| ! | AAGTTGTGACGTTTTTCTTT+TGG | - | chr3.2:952811-952830 | MS.gene53927:intron | 30.0% |
| ! | ACAGAAATTTTTCTTAGCTG+TGG | + | chr3.2:953416-953435 | None:intergenic | 30.0% |
| ! | GATTGTTGTTGTTAAATCCT+AGG | - | chr3.2:954204-954223 | MS.gene53927:intron | 30.0% |
| ! | GGATTAACCAAAATTGATTC+TGG | - | chr3.2:952332-952351 | MS.gene53927:intron | 30.0% |
| ! | GTTTTTGTTCATGCTATAAG+TGG | + | chr3.2:953261-953280 | None:intergenic | 30.0% |
| ! | TCTTTACGATCCATTTTGTT+AGG | - | chr3.2:953932-953951 | MS.gene53927:intron | 30.0% |
| ! | TTAACCAAAATTGATTCTGG+AGG | - | chr3.2:952335-952354 | MS.gene53927:intron | 30.0% |
| !! | GCTTTAAAGAAAGTTCTTAC+TGG | - | chr3.2:954533-954552 | MS.gene53927:intron | 30.0% |
| !! | TCACTTTTAGAAGTTCTAAC+AGG | + | chr3.2:952608-952627 | None:intergenic | 30.0% |
| AAACATTGCCATGAGAACAA+GGG | + | chr3.2:954352-954371 | None:intergenic | 35.0% | |
| AAATGGAAGACAGTCCAATT+AGG | - | chr3.2:954048-954067 | MS.gene53927:intron | 35.0% | |
| ACAATCAAACCATCTTCACT+AGG | + | chr3.2:954190-954209 | None:intergenic | 35.0% | |
| ACTAAACAAGACATGGTTGT+GGG | + | chr3.2:953026-953045 | None:intergenic | 35.0% | |
| CACATCCATATATGCTTTCT+CGG | + | chr3.2:953622-953641 | None:intergenic | 35.0% | |
| CTGCATTCCTACATAAATGA+CGG | + | chr3.2:953000-953019 | None:intergenic | 35.0% | |
| GACACAGAGATGTAAAATTG+TGG | + | chr3.2:954276-954295 | None:intergenic | 35.0% | |
| GCATATTACCTCAACTCTAT+TGG | + | chr3.2:953793-953812 | None:intergenic | 35.0% | |
| TACTAAACAAGACATGGTTG+TGG | + | chr3.2:953027-953046 | None:intergenic | 35.0% | |
| TATGATGCTCACGAACTTTA+TGG | - | chr3.2:953762-953781 | MS.gene53927:intron | 35.0% | |
| TCAGATGTTAAAGGGAAATG+AGG | + | chr3.2:954512-954531 | None:intergenic | 35.0% | |
| TTAAGCTGTTTGTCCAAACA+GGG | - | chr3.2:953357-953376 | MS.gene53927:intron | 35.0% | |
| ! | ATCCATTTTGTTAGGAGGAT+GGG | - | chr3.2:953940-953959 | MS.gene53927:intron | 35.0% |
| ! | GAGGCTAATGTTTTGCAAAT+AGG | - | chr3.2:953676-953695 | MS.gene53927:intron | 35.0% |
| ! | TGGATTCTATCACTTGTTGA+AGG | - | chr3.2:952103-952122 | MS.gene53927:intron | 35.0% |
| ! | TTACGATCCATTTTGTTAGG+AGG | - | chr3.2:953935-953954 | MS.gene53927:intron | 35.0% |
| !! | ATAGTTCAAGGTGGGTTAAT+TGG | + | chr3.2:952976-952995 | None:intergenic | 35.0% |
| !! | TTGGGAGTATTTCCTATATG+TGG | - | chr3.2:952937-952956 | MS.gene53927:intron | 35.0% |
| !!! | GATTTTCTTCTGGAACCAAT+TGG | + | chr3.2:951935-951954 | None:intergenic | 35.0% |
| AACCCATCCTCCTAACAAAA+TGG | + | chr3.2:953945-953964 | None:intergenic | 40.0% | |
| AAGTTCGTGAGCATCATAGT+TGG | + | chr3.2:953760-953779 | None:intergenic | 40.0% | |
| AATGACGGTATAGTTCAAGG+TGG | + | chr3.2:952985-953004 | None:intergenic | 40.0% | |
| AATTCACCGAAGCGTAGAAA+CGG | + | chr3.2:954476-954495 | None:intergenic | 40.0% | |
| ATGACGGTATAGTTCAAGGT+GGG | + | chr3.2:952984-953003 | None:intergenic | 40.0% | |
| ATTGTTCCGTTTCTACGCTT+CGG | - | chr3.2:954467-954486 | MS.gene53927:intron | 40.0% | |
| CAAACATTGCCATGAGAACA+AGG | + | chr3.2:954353-954372 | None:intergenic | 40.0% | |
| CAATTGTGCCCATAATTTCC+TGG | - | chr3.2:952673-952692 | MS.gene53927:intron | 40.0% | |
| CCATTTGTTCTACTTATCGG+CGG | + | chr3.2:954034-954053 | None:intergenic | 40.0% | |
| CTAAACAAGACATGGTTGTG+GGG | + | chr3.2:953025-953044 | None:intergenic | 40.0% | |
| CTGTGAAGAATGGAAACAAG+AGG | + | chr3.2:951964-951983 | None:intergenic | 40.0% | |
| GGAAGATGGCTATTACCAAT+TGG | - | chr3.2:951917-951936 | MS.gene53927:CDS | 40.0% | |
| GTGGCATATCAATGAGTCAA+TGG | + | chr3.2:954307-954326 | None:intergenic | 40.0% | |
| GTGGGTTTCATAAGCTATCT+TGG | + | chr3.2:953242-953261 | None:intergenic | 40.0% | |
| GTTAAGCTGTTTGTCCAAAC+AGG | - | chr3.2:953356-953375 | MS.gene53927:intron | 40.0% | |
| TTCGGTGAATTTATGTCTGG+CGG | - | chr3.2:954485-954504 | MS.gene53927:intron | 40.0% | |
| TTGTTCGGCTAGAGAAGAAT+TGG | - | chr3.2:952381-952400 | MS.gene53927:intron | 40.0% | |
| ! | AGGATCCGAGAAAGCATATA+TGG | - | chr3.2:953614-953633 | MS.gene53927:CDS | 40.0% |
| ! | CATATTAAGCGTTGTCCATG+CGG | - | chr3.2:954574-954593 | MS.gene53927:CDS | 40.0% |
| ! | CTCTTGTTTCCATTCTTCAC+AGG | - | chr3.2:951962-951981 | MS.gene53927:CDS | 40.0% |
| ! | GATCCATTTTGTTAGGAGGA+TGG | - | chr3.2:953939-953958 | MS.gene53927:intron | 40.0% |
| ! | TGCACCTCCAGAATCAATTT+TGG | + | chr3.2:952342-952361 | None:intergenic | 40.0% |
| ! | TGTATGTTTGGTCCCACTTT+TGG | - | chr3.2:952311-952330 | MS.gene53927:intron | 40.0% |
| !! | TGAAGAGTACCTGTGAAGAA+TGG | + | chr3.2:951974-951993 | None:intergenic | 40.0% |
| !!! | GAGGATCACTGATTTTCTTC+TGG | + | chr3.2:951945-951964 | None:intergenic | 40.0% |
| AGGAGCTGAACCAAATCAGT+TGG | - | chr3.2:952888-952907 | MS.gene53927:intron | 45.0% | |
| ATGCCACGTCTTGGACATAT+AGG | - | chr3.2:954320-954339 | MS.gene53927:intron | 45.0% | |
| ATGTCATAACTGGCCCTGTT+TGG | + | chr3.2:953373-953392 | None:intergenic | 45.0% | |
| CATCCAAGGAGGATGAATAG+AGG | - | chr3.2:954006-954025 | MS.gene53927:intron | 45.0% | |
| CCGCCGATAAGTAGAACAAA+TGG | - | chr3.2:954031-954050 | MS.gene53927:intron | 45.0% | |
| CGCTTCGGTGAATTTATGTC+TGG | - | chr3.2:954482-954501 | MS.gene53927:intron | 45.0% | |
| CTCATTGATATGCCACGTCT+TGG | - | chr3.2:954311-954330 | MS.gene53927:intron | 45.0% | |
| GAACCTATATGTCCAAGACG+TGG | + | chr3.2:954326-954345 | None:intergenic | 45.0% | |
| GCAGAGAAAGCCAACTGATT+TGG | + | chr3.2:952901-952920 | None:intergenic | 45.0% | |
| GCTGCTCTTGGCATTACATT+GGG | - | chr3.2:952919-952938 | MS.gene53927:intron | 45.0% | |
| GGAATGGCTATTGCATTGCT+TGG | - | chr3.2:953718-953737 | MS.gene53927:intron | 45.0% | |
| GGTTCTTTCCCTTGTTCTCA+TGG | - | chr3.2:954341-954360 | MS.gene53927:intron | 45.0% | |
| TCAAACCATCTTCACTAGGC+AGG | + | chr3.2:954186-954205 | None:intergenic | 45.0% | |
| TCATTCCTGCCTAGTGAAGA+TGG | - | chr3.2:954178-954197 | MS.gene53927:intron | 45.0% | |
| TCGGTGAATTTATGTCTGGC+GGG | - | chr3.2:954486-954505 | MS.gene53927:intron | 45.0% | |
| TGCTGCTCTTGGCATTACAT+TGG | - | chr3.2:952918-952937 | MS.gene53927:intron | 45.0% | |
| ! | GATGGGTTCTTAGTTTCTCG+TGG | - | chr3.2:953957-953976 | MS.gene53927:intron | 45.0% |
| ATGCAATAGCCATTCCGCAG+AGG | + | chr3.2:953714-953733 | None:intergenic | 50.0% | |
| CACTGTATTCCTCTGCGGAA+TGG | - | chr3.2:953702-953721 | MS.gene53927:intron | 50.0% | |
| GAGCCTCTATTCATCCTCCT+TGG | + | chr3.2:954012-954031 | None:intergenic | 50.0% | |
| GATTGGACATTGGGCCTGTT+TGG | - | chr3.2:953101-953120 | MS.gene53927:intron | 50.0% | |
| TACTGGTCAAGCTTCACACG+AGG | - | chr3.2:954550-954569 | MS.gene53927:CDS | 50.0% | |
| TTTCTCGGATCCTCTACAGC+AGG | + | chr3.2:953607-953626 | None:intergenic | 50.0% | |
| ! | TTAAGCGTTGTCCATGCGGT+AGG | - | chr3.2:954578-954597 | MS.gene53927:CDS | 50.0% |
| ! | TTGGCTTTCTCTGCTGCTCT+TGG | - | chr3.2:952907-952926 | MS.gene53927:intron | 50.0% |
| !! | GGTGTCACTGTATTCCTCTG+CGG | - | chr3.2:953697-953716 | MS.gene53927:intron | 50.0% |
| GATCCTCTACAGCAGCTGCA+TGG | - | chr3.2:953532-953551 | MS.gene53927:intron | 55.0% | |
| GTATAGTGGCACCTACCGCA+TGG | + | chr3.2:954592-954611 | None:intergenic | 55.0% | |
| TGGCGACGCCAATAGAGTTG+AGG | - | chr3.2:953782-953801 | MS.gene53927:intron | 55.0% | |
| GCACCATGCAGCTGCTGTAG+AGG | + | chr3.2:953538-953557 | None:intergenic | 60.0% | |
| GCAGCACACTGCACAGCTGT+TGG | - | chr3.2:953556-953575 | MS.gene53927:intron | 60.0% | |
| GTAAGTGCGGCCTGCTGTAG+AGG | - | chr3.2:953594-953613 | MS.gene53927:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 951907 | 954616 | 951907 | ID=MS.gene53927 |
| chr3.2 | mRNA | 951907 | 954616 | 951907 | ID=MS.gene53927.t1;Parent=MS.gene53927 |
| chr3.2 | exon | 954540 | 954616 | 954540 | ID=MS.gene53927.t1.exon1;Parent=MS.gene53927.t1 |
| chr3.2 | CDS | 954540 | 954616 | 954540 | ID=cds.MS.gene53927.t1;Parent=MS.gene53927.t1 |
| chr3.2 | exon | 953565 | 953635 | 953565 | ID=MS.gene53927.t1.exon2;Parent=MS.gene53927.t1 |
| chr3.2 | CDS | 953565 | 953635 | 953565 | ID=cds.MS.gene53927.t1;Parent=MS.gene53927.t1 |
| chr3.2 | exon | 952720 | 952825 | 952720 | ID=MS.gene53927.t1.exon3;Parent=MS.gene53927.t1 |
| chr3.2 | CDS | 952720 | 952825 | 952720 | ID=cds.MS.gene53927.t1;Parent=MS.gene53927.t1 |
| chr3.2 | exon | 951907 | 952060 | 951907 | ID=MS.gene53927.t1.exon4;Parent=MS.gene53927.t1 |
| chr3.2 | CDS | 951907 | 952060 | 951907 | ID=cds.MS.gene53927.t1;Parent=MS.gene53927.t1 |
| Gene Sequence |
| Protein sequence |
