Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56475.t1 | XP_024636444.1 | 98.1 | 260 | 5 | 0 | 1 | 260 | 1 | 260 | 6.30E-136 | 493.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56475.t1 | Q9C5W6 | 83.0 | 259 | 38 | 1 | 3 | 255 | 6 | 264 | 2.6e-114 | 412.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56475.t1 | G7JHI0 | 98.1 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 7.3e-134 | 486.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56475 | MS.gene010179 | PPI |
| MS.gene56475 | MS.gene052176 | PPI |
| MS.gene56475 | MS.gene055488 | PPI |
| MS.gene56475 | MS.gene010180 | PPI |
| MS.gene56475 | MS.gene013133 | PPI |
| MS.gene56475 | MS.gene028807 | PPI |
| MS.gene54847 | MS.gene56475 | PPI |
| MS.gene56475 | MS.gene013047 | PPI |
| MS.gene56475 | MS.gene035837 | PPI |
| MS.gene56475 | MS.gene043514 | PPI |
| MS.gene56475 | MS.gene31370 | PPI |
| MS.gene56475 | MS.gene050079 | PPI |
| MS.gene56475 | MS.gene64150 | PPI |
| MS.gene56475 | MS.gene38593 | PPI |
| MS.gene56475 | MS.gene043907 | PPI |
| MS.gene48435 | MS.gene56475 | PPI |
| MS.gene020411 | MS.gene56475 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56475.t1 | MTR_4g083060 | 98.054 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 0.0 | 518 |
| MS.gene56475.t1 | MTR_5g044160 | 91.429 | 245 | 21 | 0 | 1 | 245 | 1 | 245 | 5.03e-171 | 472 |
| MS.gene56475.t1 | MTR_8g086270 | 78.715 | 249 | 53 | 0 | 1 | 249 | 1 | 249 | 3.04e-146 | 409 |
| MS.gene56475.t1 | MTR_2g091225 | 77.419 | 248 | 56 | 0 | 1 | 248 | 1 | 248 | 1.05e-145 | 408 |
| MS.gene56475.t1 | MTR_2g076960 | 76.763 | 241 | 56 | 0 | 2 | 242 | 3 | 243 | 9.80e-139 | 390 |
| MS.gene56475.t1 | MTR_2g015980 | 76.446 | 242 | 56 | 1 | 11 | 252 | 9 | 249 | 6.09e-138 | 389 |
| MS.gene56475.t1 | MTR_2g091225 | 77.679 | 224 | 50 | 0 | 25 | 248 | 2 | 225 | 3.45e-132 | 373 |
| MS.gene56475.t1 | MTR_3g099380 | 71.713 | 251 | 69 | 2 | 7 | 255 | 8 | 258 | 4.91e-129 | 366 |
| MS.gene56475.t1 | MTR_5g064580 | 69.323 | 251 | 75 | 1 | 7 | 255 | 8 | 258 | 8.10e-125 | 355 |
| MS.gene56475.t1 | MTR_3g100620 | 66.383 | 235 | 76 | 1 | 7 | 238 | 11 | 245 | 7.73e-113 | 325 |
| MS.gene56475.t1 | MTR_3g099380 | 70.408 | 196 | 56 | 2 | 7 | 200 | 8 | 203 | 2.12e-96 | 281 |
| MS.gene56475.t1 | MTR_0137s0020 | 52.340 | 235 | 104 | 4 | 7 | 237 | 11 | 241 | 6.30e-75 | 228 |
| MS.gene56475.t1 | MTR_3g014060 | 51.915 | 235 | 105 | 4 | 7 | 237 | 11 | 241 | 3.63e-74 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56475.t1 | AT1G26480 | 82.692 | 260 | 39 | 1 | 2 | 255 | 5 | 264 | 2.78e-160 | 446 |
| MS.gene56475.t1 | AT1G34760 | 79.592 | 245 | 49 | 1 | 4 | 248 | 2 | 245 | 4.42e-145 | 406 |
| MS.gene56475.t1 | AT1G34760 | 79.592 | 245 | 49 | 1 | 4 | 248 | 2 | 245 | 4.73e-145 | 406 |
| MS.gene56475.t1 | AT2G42590 | 77.143 | 245 | 56 | 0 | 1 | 245 | 1 | 245 | 4.69e-142 | 399 |
| MS.gene56475.t1 | AT2G42590 | 77.143 | 245 | 56 | 0 | 1 | 245 | 1 | 245 | 6.53e-142 | 399 |
| MS.gene56475.t1 | AT2G42590 | 74.902 | 255 | 63 | 1 | 1 | 254 | 1 | 255 | 4.57e-141 | 397 |
| MS.gene56475.t1 | AT1G22300 | 75.918 | 245 | 59 | 0 | 4 | 248 | 2 | 246 | 3.14e-134 | 379 |
| MS.gene56475.t1 | AT1G22300 | 75.918 | 245 | 59 | 0 | 4 | 248 | 2 | 246 | 3.78e-134 | 379 |
| MS.gene56475.t1 | AT1G22300 | 77.083 | 240 | 55 | 0 | 4 | 243 | 2 | 241 | 7.91e-134 | 378 |
| MS.gene56475.t1 | AT5G38480 | 72.157 | 255 | 65 | 4 | 1 | 253 | 1 | 251 | 2.46e-128 | 364 |
| MS.gene56475.t1 | AT3G02520 | 70.543 | 258 | 67 | 4 | 7 | 255 | 5 | 262 | 3.87e-126 | 359 |
| MS.gene56475.t1 | AT3G02520 | 70.543 | 258 | 67 | 4 | 7 | 255 | 5 | 262 | 3.87e-126 | 359 |
| MS.gene56475.t1 | AT5G38480 | 73.171 | 246 | 61 | 3 | 1 | 244 | 1 | 243 | 6.32e-126 | 358 |
| MS.gene56475.t1 | AT5G38480 | 73.171 | 246 | 61 | 3 | 1 | 244 | 1 | 243 | 6.32e-126 | 358 |
| MS.gene56475.t1 | AT1G35160 | 70.238 | 252 | 72 | 2 | 7 | 255 | 11 | 262 | 6.40e-125 | 356 |
| MS.gene56475.t1 | AT1G78300 | 69.841 | 252 | 73 | 3 | 7 | 255 | 5 | 256 | 2.73e-124 | 354 |
| MS.gene56475.t1 | AT4G09000 | 70.782 | 243 | 69 | 2 | 7 | 247 | 10 | 252 | 4.85e-124 | 353 |
| MS.gene56475.t1 | AT1G35160 | 73.077 | 234 | 61 | 2 | 7 | 238 | 11 | 244 | 7.65e-122 | 349 |
| MS.gene56475.t1 | AT4G09000 | 72.650 | 234 | 62 | 2 | 7 | 238 | 10 | 243 | 7.35e-121 | 347 |
| MS.gene56475.t1 | AT5G16050 | 67.470 | 249 | 79 | 1 | 1 | 247 | 1 | 249 | 5.81e-120 | 343 |
| MS.gene56475.t1 | AT5G16050 | 67.470 | 249 | 79 | 1 | 1 | 247 | 1 | 249 | 5.81e-120 | 343 |
| MS.gene56475.t1 | AT5G65430 | 68.421 | 247 | 75 | 1 | 1 | 244 | 1 | 247 | 8.05e-118 | 337 |
| MS.gene56475.t1 | AT5G65430 | 68.852 | 244 | 73 | 1 | 1 | 241 | 1 | 244 | 8.11e-118 | 337 |
| MS.gene56475.t1 | AT5G65430 | 69.295 | 241 | 71 | 1 | 1 | 238 | 1 | 241 | 8.56e-117 | 335 |
| MS.gene56475.t1 | AT5G10450 | 66.393 | 244 | 79 | 1 | 1 | 241 | 1 | 244 | 7.25e-115 | 330 |
| MS.gene56475.t1 | AT5G10450 | 66.667 | 243 | 78 | 1 | 1 | 240 | 1 | 243 | 8.67e-115 | 330 |
| MS.gene56475.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 4.45e-114 | 328 |
| MS.gene56475.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 1.23e-113 | 328 |
| MS.gene56475.t1 | AT1G78220 | 51.709 | 234 | 112 | 1 | 4 | 236 | 2 | 235 | 4.02e-82 | 246 |
| MS.gene56475.t1 | AT1G22290 | 50.463 | 216 | 83 | 5 | 4 | 214 | 2 | 198 | 7.26e-60 | 189 |
| MS.gene56475.t1 | AT1G22290 | 50.235 | 213 | 82 | 5 | 4 | 211 | 2 | 195 | 2.14e-59 | 187 |
| MS.gene56475.t1 | AT2G10450 | 56.364 | 55 | 19 | 1 | 204 | 258 | 16 | 65 | 4.51e-13 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAAGTAACTTGCCTTTC+AGG | 0.239976 | 4.4:+29995484 | None:intergenic |
| CTGAGTTTCTCGCTCTTTCT+CGG | 0.244645 | 4.4:+29997648 | None:intergenic |
| TGAGAGACAACCTAACTCTT+TGG | 0.316077 | 4.4:-29994748 | MS.gene56475:CDS |
| CATGGCCAAGCTTGCTGAAC+AGG | 0.334846 | 4.4:-29997620 | MS.gene56475:CDS |
| ATAGTTCCTCCTCAACCTTT+TGG | 0.360282 | 4.4:+29996247 | None:intergenic |
| ATGCAAACCTTCGTATCTTT+CGG | 0.387972 | 4.4:+29997597 | None:intergenic |
| AACATACAGGGCCTGTCATT+TGG | 0.388777 | 4.4:-29994858 | MS.gene56475:intron |
| TTCGGCCTGTTCAGCAAGCT+TGG | 0.428676 | 4.4:+29997615 | None:intergenic |
| AATCAGAGGTCCAAAGAGTT+AGG | 0.440222 | 4.4:+29994738 | None:intergenic |
| TGCCTCCTTCCTATCTTGAT+CGG | 0.452703 | 4.4:+29995759 | None:intergenic |
| AGTTCAAAACCGATCAAGAT+AGG | 0.455794 | 4.4:-29995768 | MS.gene56475:CDS |
| GATCAAGAGTTATTGCCAAA+AGG | 0.475920 | 4.4:-29996262 | MS.gene56475:CDS |
| AGACGGATTGGATGTGTTGA+TGG | 0.480349 | 4.4:+29995556 | None:intergenic |
| GAGTTATTGCCAAAAGGTTG+AGG | 0.482988 | 4.4:-29996256 | MS.gene56475:CDS |
| ACACATACCTCTGGTTCAGC+AGG | 0.484973 | 4.4:+29994609 | None:intergenic |
| CTGATTCCTTCTTCCACCAC+AGG | 0.490282 | 4.4:-29996183 | MS.gene56475:CDS |
| CGAGAAAGAGCGAGAAACTC+AGG | 0.500078 | 4.4:-29997647 | MS.gene56475:CDS |
| TGAACAGAAAGAAGAGGCTA+AGG | 0.502324 | 4.4:-29996307 | MS.gene56475:CDS |
| ATGAATTACACACATACCTC+TGG | 0.504287 | 4.4:+29994600 | None:intergenic |
| GCTTCCCCTGTGGTGGAAGA+AGG | 0.510142 | 4.4:+29996177 | None:intergenic |
| GGCAGCTGAGCAGTCACTGA+AGG | 0.516463 | 4.4:-29995740 | MS.gene56475:CDS |
| ACCTCTGATTTACCTGAGGA+TGG | 0.523658 | 4.4:-29994725 | MS.gene56475:CDS |
| TCAACACATCCAATCCGTCT+TGG | 0.541520 | 4.4:-29995553 | MS.gene56475:CDS |
| AGCTTGTTTAGCCAAATGAC+AGG | 0.543002 | 4.4:+29994847 | None:intergenic |
| AGTGCAAGTCCAAGACGGAT+TGG | 0.548630 | 4.4:+29995544 | None:intergenic |
| AACAGTAGCTTCCCCTGTGG+TGG | 0.549800 | 4.4:+29996170 | None:intergenic |
| GCGAGAAACTCAGGTTTACA+TGG | 0.557345 | 4.4:-29997638 | MS.gene56475:CDS |
| GCAGTCACTGAAGGCATATG+AGG | 0.557872 | 4.4:-29995731 | MS.gene56475:intron |
| GAGAGGAATCTTCTCTCAGT+GGG | 0.559508 | 4.4:-29996384 | MS.gene56475:CDS |
| AGTATCTTACCTCCATCCTC+AGG | 0.562669 | 4.4:+29994713 | None:intergenic |
| TTGGACCTCTGATTTACCTG+AGG | 0.563128 | 4.4:-29994729 | MS.gene56475:CDS |
| CAAAACCGATCAAGATAGGA+AGG | 0.568265 | 4.4:-29995764 | MS.gene56475:CDS |
| AGATAATGAACTCTCCTGAA+AGG | 0.578007 | 4.4:-29995498 | MS.gene56475:intron |
| CTTGTATGACTCTTCACTCA+AGG | 0.578019 | 4.4:+29994796 | None:intergenic |
| TTCAATTGAACAGAAAGAAG+AGG | 0.578869 | 4.4:-29996313 | MS.gene56475:CDS |
| TGATTCCTTCTTCCACCACA+GGG | 0.582149 | 4.4:-29996182 | MS.gene56475:CDS |
| TTGAGCTAACTGTGGAAGAG+AGG | 0.587221 | 4.4:-29996401 | MS.gene56475:CDS |
| CTTGAGTGAAGAGTCATACA+AGG | 0.594010 | 4.4:-29994795 | MS.gene56475:CDS |
| TGGAAGATCTGTGCTTGCAG+TGG | 0.604670 | 4.4:+29995576 | None:intergenic |
| TTATTGCCAAAAGGTTGAGG+AGG | 0.625542 | 4.4:-29996253 | MS.gene56475:CDS |
| GAACAGAAAGAAGAGGCTAA+GGG | 0.626996 | 4.4:-29996306 | MS.gene56475:CDS |
| AGTCAAACCTGCTGAACCAG+AGG | 0.633770 | 4.4:-29994616 | MS.gene56475:CDS |
| GGCTAAACAAGCTTTCGATG+AGG | 0.651025 | 4.4:-29994837 | MS.gene56475:CDS |
| AGTTGAGTGCAAGTCCAAGA+CGG | 0.652366 | 4.4:+29995539 | None:intergenic |
| AGAGAGGAATCTTCTCTCAG+TGG | 0.653198 | 4.4:-29996385 | MS.gene56475:CDS |
| TGAAGACATAATGCGCCATG+AGG | 0.659378 | 4.4:+29996332 | None:intergenic |
| TTGGTGCAAGGAGAGCCTCA+TGG | 0.661918 | 4.4:-29996347 | MS.gene56475:CDS |
| TCCATCCTCAGGTAAATCAG+AGG | 0.670568 | 4.4:+29994724 | None:intergenic |
| ACTTGATGTTGAGCTAACTG+TGG | 0.673819 | 4.4:-29996409 | MS.gene56475:CDS |
| TCTGATTTACCTGAGGATGG+AGG | 0.684285 | 4.4:-29994722 | MS.gene56475:intron |
| AACCGATCAAGATAGGAAGG+AGG | 0.690674 | 4.4:-29995761 | MS.gene56475:CDS |
| GAACAGGCCGAAAGATACGA+AGG | 0.692940 | 4.4:-29997604 | MS.gene56475:intron |
| GATTCCTTCTTCCACCACAG+GGG | 0.708565 | 4.4:-29996181 | MS.gene56475:CDS |
| GAAAACAGTAGCTTCCCCTG+TGG | 0.763670 | 4.4:+29996167 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGTATAATTTGATTAA+AGG | + | chr4.4:29994711-29994730 | None:intergenic | 10.0% |
| !!! | ATATTTGTATTTCTATTATT+AGG | - | chr4.4:29996652-29996671 | MS.gene56475:intron | 10.0% |
| !! | ATAATTTGATTAAAGGAATA+TGG | + | chr4.4:29994704-29994723 | None:intergenic | 15.0% |
| !! | TAAAATCCATTTACAAAAAA+TGG | + | chr4.4:29996226-29996245 | None:intergenic | 15.0% |
| !!! | ATTCATTAATGTTTTTTTCT+AGG | + | chr4.4:29995541-29995560 | None:intergenic | 15.0% |
| !!! | TGATTCTAAAAGTTTATTTT+TGG | + | chr4.4:29996901-29996920 | None:intergenic | 15.0% |
| !! | ACTCACATTTATAGAATTTA+TGG | + | chr4.4:29994821-29994840 | None:intergenic | 20.0% |
| !! | AGTAATATACAAATTGCAAA+GGG | - | chr4.4:29995292-29995311 | MS.gene56475:intron | 20.0% |
| !! | ATAGAACATTATTACTCATT+AGG | - | chr4.4:29997040-29997059 | MS.gene56475:intron | 20.0% |
| !! | TAGTAATATACAAATTGCAA+AGG | - | chr4.4:29995291-29995310 | MS.gene56475:intron | 20.0% |
| !! | TATTAAACTAACCAAGAAAA+TGG | + | chr4.4:29996154-29996173 | None:intergenic | 20.0% |
| !! | TGAATTTCATATCTTTAGTT+AGG | - | chr4.4:29996986-29997005 | MS.gene56475:intron | 20.0% |
| !! | TTCTTGTGTTTAAATCTATA+TGG | - | chr4.4:29996607-29996626 | MS.gene56475:intron | 20.0% |
| !!! | AAATGTTTTAAGATCTCATA+CGG | + | chr4.4:29994928-29994947 | None:intergenic | 20.0% |
| !!! | ACTCTCTTATAGTTTTTTTT+AGG | + | chr4.4:29995157-29995176 | None:intergenic | 20.0% |
| !!! | ATCATCTGTTTAAAATATGT+AGG | - | chr4.4:29997093-29997112 | MS.gene56475:intron | 20.0% |
| !!! | ATTGAAAATTTGTTTTCGTA+TGG | - | chr4.4:29996184-29996203 | MS.gene56475:CDS | 20.0% |
| !!! | TTTTTTCTAGGAAAATATGA+CGG | + | chr4.4:29995529-29995548 | None:intergenic | 20.0% |
| ! | AAATTCATGAGAATCAATCT+AGG | + | chr4.4:29994983-29995002 | None:intergenic | 25.0% |
| ! | AACACTATTATCATTTGCAT+AGG | - | chr4.4:29997330-29997349 | MS.gene56475:intron | 25.0% |
| ! | AATAACAAATTCTCTAATGC+AGG | - | chr4.4:29997600-29997619 | MS.gene56475:intron | 25.0% |
| ! | AGATTTCAAGATTAATGAGT+TGG | - | chr4.4:29995186-29995205 | MS.gene56475:intron | 25.0% |
| ! | ATATTCTACAAAGAGTTCAA+AGG | - | chr4.4:29995346-29995365 | MS.gene56475:intron | 25.0% |
| ! | ATTACACACAAATAATCCAA+TGG | - | chr4.4:29997137-29997156 | MS.gene56475:intron | 25.0% |
| ! | ATTGGATTATTTGTGTGTAA+TGG | + | chr4.4:29997138-29997157 | None:intergenic | 25.0% |
| ! | CATTATTACTCATTAGGTAT+TGG | - | chr4.4:29997046-29997065 | MS.gene56475:intron | 25.0% |
| ! | TAAATAAGTTTGTATGATCC+AGG | - | chr4.4:29996441-29996460 | MS.gene56475:CDS | 25.0% |
| ! | TAATGAGTTGTTATGTAGTA+AGG | - | chr4.4:29995078-29995097 | MS.gene56475:intron | 25.0% |
| ! | TATTCTACAAAGAGTTCAAA+GGG | - | chr4.4:29995347-29995366 | MS.gene56475:intron | 25.0% |
| ! | TTAAAGGAATATGGAAATGA+AGG | + | chr4.4:29994695-29994714 | None:intergenic | 25.0% |
| ! | TTAAGGAAATTACACAAGAA+TGG | + | chr4.4:29995472-29995491 | None:intergenic | 25.0% |
| ! | TTACACACAAATAATCCAAT+GGG | - | chr4.4:29997138-29997157 | MS.gene56475:intron | 25.0% |
| ! | TTATCTAATATCACTACTCA+AGG | + | chr4.4:29995688-29995707 | None:intergenic | 25.0% |
| ! | TTCAATCATGTAAAGTAAGA+GGG | + | chr4.4:29996963-29996982 | None:intergenic | 25.0% |
| ! | TTCTATCATTAACCATACTT+CGG | + | chr4.4:29995213-29995232 | None:intergenic | 25.0% |
| ! | TTGGATTATTTGTGTGTAAT+GGG | + | chr4.4:29997137-29997156 | None:intergenic | 25.0% |
| ! | TTTCTGACAAACAAATTTCT+TGG | - | chr4.4:29997247-29997266 | MS.gene56475:intron | 25.0% |
| !!! | AATGTTTTAAGATCTCATAC+GGG | + | chr4.4:29994927-29994946 | None:intergenic | 25.0% |
| !!! | ATCGGATACAATTTATTTTG+AGG | - | chr4.4:29994863-29994882 | MS.gene56475:intron | 25.0% |
| !!! | ATTGATTTGATTTCGAGTTT+TGG | - | chr4.4:29994765-29994784 | MS.gene56475:CDS | 25.0% |
| !!! | ATTTTTTATTCGTGAAACTC+AGG | - | chr4.4:29995599-29995618 | MS.gene56475:intron | 25.0% |
| !!! | CTTGTTCCATTTTTTGTAAA+TGG | - | chr4.4:29996217-29996236 | MS.gene56475:CDS | 25.0% |
| AAAACCAATTCTGCATGTAT+CGG | - | chr4.4:29994845-29994864 | MS.gene56475:CDS | 30.0% | |
| AATGTATTTGCCATCCAAAA+AGG | - | chr4.4:29995414-29995433 | MS.gene56475:intron | 30.0% | |
| ATAAAAATGTCATTGGTGCA+AGG | - | chr4.4:29995901-29995920 | MS.gene56475:intron | 30.0% | |
| ATAACCAATCACAATTAGTC+AGG | - | chr4.4:29995704-29995723 | MS.gene56475:intron | 30.0% | |
| ATATATGTATGATGCAGAGA+TGG | - | chr4.4:29995803-29995822 | MS.gene56475:intron | 30.0% | |
| ATGTGAATACTGAAACATAC+AGG | - | chr4.4:29997389-29997408 | MS.gene56475:intron | 30.0% | |
| CTTCAATCATGTAAAGTAAG+AGG | + | chr4.4:29996964-29996983 | None:intergenic | 30.0% | |
| GAAGTCTGTTAAGAGTTAAA+AGG | - | chr4.4:29995621-29995640 | MS.gene56475:intron | 30.0% | |
| GTGGGATATAAAAATGTCAT+TGG | - | chr4.4:29995894-29995913 | MS.gene56475:intron | 30.0% | |
| GTTATATATTGATAGAGCAG+TGG | - | chr4.4:29995564-29995583 | MS.gene56475:CDS | 30.0% | |
| GTTTCAGTATTCACATTTGA+AGG | + | chr4.4:29997385-29997404 | None:intergenic | 30.0% | |
| TCAATCATGTAAAGTAAGAG+GGG | + | chr4.4:29996962-29996981 | None:intergenic | 30.0% | |
| TGTCAGAAAAGATCAAAAGA+GGG | + | chr4.4:29997236-29997255 | None:intergenic | 30.0% | |
| TGTGAATACTGAAACATACA+GGG | - | chr4.4:29997390-29997409 | MS.gene56475:intron | 30.0% | |
| TTATATGTGAATCAGTTCAG+TGG | + | chr4.4:29996586-29996605 | None:intergenic | 30.0% | |
| TTCAATTGAACAGAAAGAAG+AGG | - | chr4.4:29995947-29995966 | MS.gene56475:intron | 30.0% | |
| TTCAGTGGTGAAATAAACAA+GGG | + | chr4.4:29996571-29996590 | None:intergenic | 30.0% | |
| TTGTCAGAAAAGATCAAAAG+AGG | + | chr4.4:29997237-29997256 | None:intergenic | 30.0% | |
| TTTACAAATCGATCAGCTTA+AGG | + | chr4.4:29995489-29995508 | None:intergenic | 30.0% | |
| ! | ATAAACTCTAAAGAGCCATT+TGG | + | chr4.4:29997022-29997041 | None:intergenic | 30.0% |
| ! | ATATGTCTGAAGTTTCAGAA+AGG | + | chr4.4:29995783-29995802 | None:intergenic | 30.0% |
| ! | CAGATGATAGTTTTCTAACT+TGG | + | chr4.4:29997081-29997100 | None:intergenic | 30.0% |
| ! | TAAACTCTAAAGAGCCATTT+GGG | + | chr4.4:29997021-29997040 | None:intergenic | 30.0% |
| ! | TGATAGTTTTCTAACTTGGA+TGG | + | chr4.4:29997077-29997096 | None:intergenic | 30.0% |
| !!! | TACGCTCTTTATTAGCTTTT+GGG | - | chr4.4:29996799-29996818 | MS.gene56475:intron | 30.0% |
| !!! | TTACGCTCTTTATTAGCTTT+TGG | - | chr4.4:29996798-29996817 | MS.gene56475:intron | 30.0% |
| !!! | TTTTACTTCTGCCATTTTCT+TGG | - | chr4.4:29996140-29996159 | MS.gene56475:intron | 30.0% |
| !!! | TTTTTTTCTTTCCCGATCAT+TGG | - | chr4.4:29996276-29996295 | MS.gene56475:CDS | 30.0% |
| AAGTTTGTATGATCCAGGAA+AGG | - | chr4.4:29996446-29996465 | MS.gene56475:intron | 35.0% | |
| ACATCCTGACTAATTGTGAT+TGG | + | chr4.4:29995711-29995730 | None:intergenic | 35.0% | |
| AGATAATGAACTCTCCTGAA+AGG | - | chr4.4:29996762-29996781 | MS.gene56475:intron | 35.0% | |
| AGTTCAAAACCGATCAAGAT+AGG | - | chr4.4:29996492-29996511 | MS.gene56475:intron | 35.0% | |
| ATAGCAAAACCGCTTAAGTT+CGG | - | chr4.4:29995646-29995665 | MS.gene56475:intron | 35.0% | |
| ATCAGTTAAACCATGCAAGA+TGG | + | chr4.4:29995059-29995078 | None:intergenic | 35.0% | |
| ATGCAAACCTTCGTATCTTT+CGG | + | chr4.4:29994666-29994685 | None:intergenic | 35.0% | |
| CAGTATTCACATTTGAAGGA+AGG | + | chr4.4:29997381-29997400 | None:intergenic | 35.0% | |
| GATCAAGAGTTATTGCCAAA+AGG | - | chr4.4:29995998-29996017 | MS.gene56475:intron | 35.0% | |
| GTGATCTTTCATCCAATGAT+CGG | + | chr4.4:29996291-29996310 | None:intergenic | 35.0% | |
| GTTCAGTGGTGAAATAAACA+AGG | + | chr4.4:29996572-29996591 | None:intergenic | 35.0% | |
| TGATCTTTCATCCAATGATC+GGG | + | chr4.4:29996290-29996309 | None:intergenic | 35.0% | |
| TGCCATCCAAAAAGGATTAA+CGG | - | chr4.4:29995422-29995441 | MS.gene56475:intron | 35.0% | |
| ! | AAGGAGAGTATATAAGACAC+AGG | - | chr4.4:29995097-29995116 | MS.gene56475:intron | 35.0% |
| ! | ACAAATTGCAAAGGGTCTTT+TGG | - | chr4.4:29995300-29995319 | MS.gene56475:intron | 35.0% |
| ! | AGTAAAGTAACTTGCCTTTC+AGG | + | chr4.4:29996779-29996798 | None:intergenic | 35.0% |
| ! | AGTTTTCTAACTTGGATGGA+TGG | + | chr4.4:29997073-29997092 | None:intergenic | 35.0% |
| ! | CACAAATAATCCAATGGGTT+TGG | - | chr4.4:29997143-29997162 | MS.gene56475:intron | 35.0% |
| ! | TCTAGAATACTCCTTAGTGA+GGG | - | chr4.4:29997208-29997227 | MS.gene56475:intron | 35.0% |
| ! | TTTCTAGGAAAATATGACGG+TGG | + | chr4.4:29995526-29995545 | None:intergenic | 35.0% |
| !! | TTCTAGAATACTCCTTAGTG+AGG | - | chr4.4:29997207-29997226 | MS.gene56475:intron | 35.0% |
| !!! | AGTTTTTTAACAGCGAAGAC+AGG | - | chr4.4:29996923-29996942 | MS.gene56475:intron | 35.0% |
| !!! | GTTTTTTAACAGCGAAGACA+GGG | - | chr4.4:29996924-29996943 | MS.gene56475:intron | 35.0% |
| AACCGCTTAAGTTCGGAATT+TGG | - | chr4.4:29995653-29995672 | MS.gene56475:intron | 40.0% | |
| AATCAGAGGTCCAAAGAGTT+AGG | + | chr4.4:29997525-29997544 | None:intergenic | 40.0% | |
| ACTTGATGTTGAGCTAACTG+TGG | - | chr4.4:29995851-29995870 | MS.gene56475:intron | 40.0% | |
| AGAGCTAGCATACTACAACT+AGG | + | chr4.4:29997169-29997188 | None:intergenic | 40.0% | |
| CAAAACCGATCAAGATAGGA+AGG | - | chr4.4:29996496-29996515 | MS.gene56475:intron | 40.0% | |
| CACAAGAATGGAATGCAAAC+AGG | + | chr4.4:29995460-29995479 | None:intergenic | 40.0% | |
| CTTGAGTGAAGAGTCATACA+AGG | - | chr4.4:29997465-29997484 | MS.gene56475:intron | 40.0% | |
| CTTGTATGACTCTTCACTCA+AGG | + | chr4.4:29997467-29997486 | None:intergenic | 40.0% | |
| GAACAGAAAGAAGAGGCTAA+GGG | - | chr4.4:29995954-29995973 | MS.gene56475:intron | 40.0% | |
| GAGTTATTGCCAAAAGGTTG+AGG | - | chr4.4:29996004-29996023 | MS.gene56475:intron | 40.0% | |
| GCATGAATCTTACTTCCAGA+CGG | + | chr4.4:29996875-29996894 | None:intergenic | 40.0% | |
| GTATCCGATACATGCAGAAT+TGG | + | chr4.4:29994852-29994871 | None:intergenic | 40.0% | |
| GTCTGGAAGTAAGATTCATG+CGG | - | chr4.4:29996874-29996893 | MS.gene56475:intron | 40.0% | |
| TATCAACGACCTTTGATGCT+AGG | + | chr4.4:29995329-29995348 | None:intergenic | 40.0% | |
| TCGATAATAGTCACCTTTCC+TGG | + | chr4.4:29996462-29996481 | None:intergenic | 40.0% | |
| TGAACAGAAAGAAGAGGCTA+AGG | - | chr4.4:29995953-29995972 | MS.gene56475:intron | 40.0% | |
| TGAGAGACAACCTAACTCTT+TGG | - | chr4.4:29997512-29997531 | MS.gene56475:intron | 40.0% | |
| TTAGGCACATTTGACCCAAA+TGG | - | chr4.4:29997004-29997023 | MS.gene56475:intron | 40.0% | |
| TTATTGCCAAAAGGTTGAGG+AGG | - | chr4.4:29996007-29996026 | MS.gene56475:intron | 40.0% | |
| TTTCTCTGTCTCTAGTGATC+CGG | + | chr4.4:29995132-29995151 | None:intergenic | 40.0% | |
| ! | AGCTTGTTTAGCCAAATGAC+AGG | + | chr4.4:29997416-29997435 | None:intergenic | 40.0% |
| ! | ATAGTTCCTCCTCAACCTTT+TGG | + | chr4.4:29996016-29996035 | None:intergenic | 40.0% |
| ! | TAATGAGTTGGACCGAAGTA+TGG | - | chr4.4:29995198-29995217 | MS.gene56475:intron | 40.0% |
| ! | TGCCGTTAATCCTTTTTGGA+TGG | + | chr4.4:29995427-29995446 | None:intergenic | 40.0% |
| !! | GATGTGCCGTTAATCCTTTT+TGG | + | chr4.4:29995431-29995450 | None:intergenic | 40.0% |
| !!! | TTTTGGCTTCCTAGCATCAA+AGG | - | chr4.4:29995317-29995336 | MS.gene56475:intron | 40.0% |
| AAAAGAGGGATCCCTCACTA+AGG | + | chr4.4:29997222-29997241 | None:intergenic | 45.0% | |
| AACATACAGGGCCTGTCATT+TGG | - | chr4.4:29997402-29997421 | MS.gene56475:intron | 45.0% | |
| AACCGATCAAGATAGGAAGG+AGG | - | chr4.4:29996499-29996518 | MS.gene56475:intron | 45.0% | |
| ACCTCTGATTTACCTGAGGA+TGG | - | chr4.4:29997535-29997554 | MS.gene56475:intron | 45.0% | |
| AGAGAGGAATCTTCTCTCAG+TGG | - | chr4.4:29995875-29995894 | MS.gene56475:intron | 45.0% | |
| AGTATCTTACCTCCATCCTC+AGG | + | chr4.4:29997550-29997569 | None:intergenic | 45.0% | |
| AGTTGAGTGCAAGTCCAAGA+CGG | + | chr4.4:29996724-29996743 | None:intergenic | 45.0% | |
| CGCCAAATTCCGAACTTAAG+CGG | + | chr4.4:29995658-29995677 | None:intergenic | 45.0% | |
| CGCTTAAGTTCGGAATTTGG+CGG | - | chr4.4:29995656-29995675 | MS.gene56475:intron | 45.0% | |
| CTGAGTTTCTCGCTCTTTCT+CGG | + | chr4.4:29994615-29994634 | None:intergenic | 45.0% | |
| GAGAGGAATCTTCTCTCAGT+GGG | - | chr4.4:29995876-29995895 | MS.gene56475:intron | 45.0% | |
| GCGAGAAACTCAGGTTTACA+TGG | - | chr4.4:29994622-29994641 | MS.gene56475:CDS | 45.0% | |
| GCGATGTATACCATCTTGCA+TGG | - | chr4.4:29995046-29995065 | MS.gene56475:intron | 45.0% | |
| GGCTAAACAAGCTTTCGATG+AGG | - | chr4.4:29997423-29997442 | MS.gene56475:intron | 45.0% | |
| TACAACTAGGCCAAACCCAT+TGG | + | chr4.4:29997156-29997175 | None:intergenic | 45.0% | |
| TCAACACATCCAATCCGTCT+TGG | - | chr4.4:29996707-29996726 | MS.gene56475:intron | 45.0% | |
| TCCATCCTCAGGTAAATCAG+AGG | + | chr4.4:29997539-29997558 | None:intergenic | 45.0% | |
| TCTGATTTACCTGAGGATGG+AGG | - | chr4.4:29997538-29997557 | MS.gene56475:intron | 45.0% | |
| TGAAGACATAATGCGCCATG+AGG | + | chr4.4:29995931-29995950 | None:intergenic | 45.0% | |
| TGATTCCTTCTTCCACCACA+GGG | - | chr4.4:29996078-29996097 | MS.gene56475:intron | 45.0% | |
| TGCCTCCTTCCTATCTTGAT+CGG | + | chr4.4:29996504-29996523 | None:intergenic | 45.0% | |
| TTGAGCTAACTGTGGAAGAG+AGG | - | chr4.4:29995859-29995878 | MS.gene56475:intron | 45.0% | |
| TTGGACCTCTGATTTACCTG+AGG | - | chr4.4:29997531-29997550 | MS.gene56475:intron | 45.0% | |
| ! | AAGACACAGGAGAGTATAGC+CGG | - | chr4.4:29995110-29995129 | MS.gene56475:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.4:29995266-29995285 | None:intergenic | 45.0% |
| ! | CTTTTGGGCTCGATTGTACT+GGG | - | chr4.4:29996814-29996833 | MS.gene56475:intron | 45.0% |
| !! | AGACGGATTGGATGTGTTGA+TGG | + | chr4.4:29996707-29996726 | None:intergenic | 45.0% |
| !!! | GTTACTGATTTTGTGCCGTC+TGG | - | chr4.4:29996857-29996876 | MS.gene56475:intron | 45.0% |
| AGTCAAACCTGCTGAACCAG+AGG | - | chr4.4:29997644-29997663 | MS.gene56475:CDS | 50.0% | |
| AGTGCAAGTCCAAGACGGAT+TGG | + | chr4.4:29996719-29996738 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.4:29995264-29995283 | MS.gene56475:intron | 50.0% | |
| CCTTATCCCACTAAGTGGGT+CGG | + | chr4.4:29995262-29995281 | None:intergenic | 50.0% | |
| CGAGAAAGAGCGAGAAACTC+AGG | - | chr4.4:29994613-29994632 | MS.gene56475:CDS | 50.0% | |
| CTGATTCCTTCTTCCACCAC+AGG | - | chr4.4:29996077-29996096 | MS.gene56475:intron | 50.0% | |
| GAAAACAGTAGCTTCCCCTG+TGG | + | chr4.4:29996096-29996115 | None:intergenic | 50.0% | |
| GAACAGGCCGAAAGATACGA+AGG | - | chr4.4:29994656-29994675 | MS.gene56475:intron | 50.0% | |
| GATTCCTTCTTCCACCACAG+GGG | - | chr4.4:29996079-29996098 | MS.gene56475:intron | 50.0% | |
| GGGTCATGCATGTGTCTCTT+AGG | - | chr4.4:29995367-29995386 | MS.gene56475:intron | 50.0% | |
| TGGAAGATCTGTGCTTGCAG+TGG | + | chr4.4:29996687-29996706 | None:intergenic | 50.0% | |
| ! | ACACATACCTCTGGTTCAGC+AGG | + | chr4.4:29997654-29997673 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.4:29995267-29995286 | None:intergenic | 50.0% |
| ! | GCAGTCACTGAAGGCATATG+AGG | - | chr4.4:29996529-29996548 | MS.gene56475:intron | 50.0% |
| ! | GCTTTTGGGCTCGATTGTAC+TGG | - | chr4.4:29996813-29996832 | MS.gene56475:intron | 50.0% |
| AACAGTAGCTTCCCCTGTGG+TGG | + | chr4.4:29996093-29996112 | None:intergenic | 55.0% | |
| ACGTAGCCGACCCACTTAGT+GGG | - | chr4.4:29995253-29995272 | MS.gene56475:intron | 55.0% | |
| CCGACCCACTTAGTGGGATA+AGG | - | chr4.4:29995259-29995278 | MS.gene56475:intron | 55.0% | |
| GGGCTCGATTGTACTGGGTT+TGG | - | chr4.4:29996819-29996838 | MS.gene56475:intron | 55.0% | |
| TTCGGCCTGTTCAGCAAGCT+TGG | + | chr4.4:29994648-29994667 | None:intergenic | 55.0% | |
| TTGGTGCAAGGAGAGCCTCA+TGG | - | chr4.4:29995913-29995932 | MS.gene56475:intron | 55.0% | |
| !! | CATGGCCAAGCTTGCTGAAC+AGG | - | chr4.4:29994640-29994659 | MS.gene56475:CDS | 55.0% |
| CACGTAGCCGACCCACTTAG+TGG | - | chr4.4:29995252-29995271 | MS.gene56475:intron | 60.0% | |
| CACTAAGTGGGTCGGCTACG+TGG | + | chr4.4:29995254-29995273 | None:intergenic | 60.0% | |
| GGCAGCTGAGCAGTCACTGA+AGG | - | chr4.4:29996520-29996539 | MS.gene56475:intron | 60.0% | |
| ! | GCTTCCCCTGTGGTGGAAGA+AGG | + | chr4.4:29996086-29996105 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29994605 | 29997677 | 29994605 | ID=MS.gene56475 |
| chr4.4 | mRNA | 29994605 | 29997677 | 29994605 | ID=MS.gene56475.t1;Parent=MS.gene56475 |
| chr4.4 | exon | 29997605 | 29997677 | 29997605 | ID=MS.gene56475.t1.exon1;Parent=MS.gene56475.t1 |
| chr4.4 | CDS | 29997605 | 29997677 | 29997605 | ID=cds.MS.gene56475.t1;Parent=MS.gene56475.t1 |
| chr4.4 | exon | 29996156 | 29996462 | 29996156 | ID=MS.gene56475.t1.exon2;Parent=MS.gene56475.t1 |
| chr4.4 | CDS | 29996156 | 29996462 | 29996156 | ID=cds.MS.gene56475.t1;Parent=MS.gene56475.t1 |
| chr4.4 | exon | 29995732 | 29995819 | 29995732 | ID=MS.gene56475.t1.exon3;Parent=MS.gene56475.t1 |
| chr4.4 | CDS | 29995732 | 29995819 | 29995732 | ID=cds.MS.gene56475.t1;Parent=MS.gene56475.t1 |
| chr4.4 | exon | 29995499 | 29995608 | 29995499 | ID=MS.gene56475.t1.exon4;Parent=MS.gene56475.t1 |
| chr4.4 | CDS | 29995499 | 29995608 | 29995499 | ID=cds.MS.gene56475.t1;Parent=MS.gene56475.t1 |
| chr4.4 | exon | 29994723 | 29994871 | 29994723 | ID=MS.gene56475.t1.exon5;Parent=MS.gene56475.t1 |
| chr4.4 | CDS | 29994723 | 29994871 | 29994723 | ID=cds.MS.gene56475.t1;Parent=MS.gene56475.t1 |
| chr4.4 | exon | 29994605 | 29994660 | 29994605 | ID=MS.gene56475.t1.exon6;Parent=MS.gene56475.t1 |
| chr4.4 | CDS | 29994605 | 29994660 | 29994605 | ID=cds.MS.gene56475.t1;Parent=MS.gene56475.t1 |
| Gene Sequence |
| Protein sequence |
