Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57718.t1 | XP_013458180.1 | 96.7 | 239 | 8 | 0 | 1 | 239 | 55 | 293 | 7.40E-131 | 476.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57718.t1 | Q9ZT66 | 42.6 | 195 | 102 | 4 | 6 | 194 | 29 | 219 | 5.3e-37 | 156.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57718.t1 | A0A072US82 | 96.7 | 239 | 8 | 0 | 1 | 239 | 55 | 293 | 5.3e-131 | 476.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene57718 | 0.807457 | 5.01E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene57718 | 0.825877 | 3.69E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene57718 | 0.84151 | 4.55E-58 | -1.69E-46 |
| MS.gene051127 | MS.gene57718 | 0.834775 | 2.47E-56 | -1.69E-46 |
| MS.gene051138 | MS.gene57718 | 0.805251 | 1.46E-49 | -1.69E-46 |
| MS.gene053069 | MS.gene57718 | 0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene57718 | 0.826641 | 2.43E-54 | -1.69E-46 |
| MS.gene055124 | MS.gene57718 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene055139 | MS.gene57718 | 0.80346 | 3.45E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene57718 | 0.803197 | 3.91E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene57718 | 0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene055959 | MS.gene57718 | 0.80534 | 1.40E-49 | -1.69E-46 |
| MS.gene056218 | MS.gene57718 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene056298 | MS.gene57718 | 0.855844 | 4.80E-62 | -1.69E-46 |
| MS.gene056310 | MS.gene57718 | 0.817912 | 2.58E-52 | -1.69E-46 |
| MS.gene056311 | MS.gene57718 | 0.823479 | 1.35E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene57718 | -0.820527 | 6.54E-53 | -1.69E-46 |
| MS.gene057550 | MS.gene57718 | 0.808245 | 3.41E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene57718 | 0.811914 | 5.52E-51 | -1.69E-46 |
| MS.gene058093 | MS.gene57718 | 0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene57718 | 0.85633 | 3.46E-62 | -1.69E-46 |
| MS.gene058108 | MS.gene57718 | 0.860476 | 2.01E-63 | -1.69E-46 |
| MS.gene058109 | MS.gene57718 | 0.868759 | 5.14E-66 | -1.69E-46 |
| MS.gene058111 | MS.gene57718 | 0.854092 | 1.55E-61 | -1.69E-46 |
| MS.gene058171 | MS.gene57718 | 0.866536 | 2.65E-65 | -1.69E-46 |
| MS.gene058173 | MS.gene57718 | 0.864978 | 8.24E-65 | -1.69E-46 |
| MS.gene058175 | MS.gene57718 | 0.869917 | 2.16E-66 | -1.69E-46 |
| MS.gene058180 | MS.gene57718 | 0.80368 | 3.11E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene57718 | 0.801469 | 8.87E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene57718 | 0.805028 | 1.63E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene57718 | 0.842089 | 3.20E-58 | -1.69E-46 |
| MS.gene059223 | MS.gene57718 | 0.825732 | 3.99E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene57718 | -0.803438 | 3.49E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene57718 | 0.804802 | 1.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57718.t1 | MTR_4g117400 | 96.653 | 239 | 8 | 0 | 1 | 239 | 55 | 293 | 1.35e-171 | 474 |
| MS.gene57718.t1 | MTR_4g117450 | 79.916 | 239 | 48 | 0 | 1 | 239 | 1 | 239 | 9.43e-141 | 394 |
| MS.gene57718.t1 | MTR_4g117450 | 76.400 | 250 | 48 | 1 | 1 | 239 | 1 | 250 | 2.90e-137 | 385 |
| MS.gene57718.t1 | MTR_4g117380 | 66.527 | 239 | 79 | 1 | 1 | 239 | 1 | 238 | 5.93e-110 | 316 |
| MS.gene57718.t1 | MTR_4g117450 | 81.215 | 181 | 34 | 0 | 59 | 239 | 2 | 182 | 5.72e-106 | 304 |
| MS.gene57718.t1 | MTR_4g117390 | 61.088 | 239 | 83 | 1 | 1 | 239 | 1 | 229 | 1.21e-102 | 297 |
| MS.gene57718.t1 | MTR_2g021340 | 52.282 | 241 | 113 | 2 | 1 | 239 | 1 | 241 | 2.88e-83 | 248 |
| MS.gene57718.t1 | MTR_2g021340 | 52.466 | 223 | 105 | 1 | 18 | 239 | 22 | 244 | 8.36e-78 | 234 |
| MS.gene57718.t1 | MTR_3g005060 | 26.699 | 206 | 137 | 5 | 41 | 238 | 119 | 318 | 2.21e-12 | 65.9 |
| MS.gene57718.t1 | MTR_3g005060 | 26.699 | 206 | 137 | 5 | 41 | 238 | 133 | 332 | 2.52e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57718.t1 | AT3G23600 | 63.598 | 239 | 87 | 0 | 1 | 239 | 1 | 239 | 2.27e-116 | 332 |
| MS.gene57718.t1 | AT3G23600 | 62.762 | 239 | 86 | 1 | 1 | 239 | 1 | 236 | 6.06e-113 | 323 |
| MS.gene57718.t1 | AT3G23570 | 60.251 | 239 | 95 | 0 | 1 | 239 | 1 | 239 | 6.62e-112 | 321 |
| MS.gene57718.t1 | AT3G23570 | 60.251 | 239 | 95 | 0 | 1 | 239 | 1 | 239 | 6.62e-112 | 321 |
| MS.gene57718.t1 | AT3G23570 | 60.251 | 239 | 95 | 0 | 1 | 239 | 1 | 239 | 6.62e-112 | 321 |
| MS.gene57718.t1 | AT1G35420 | 24.752 | 202 | 138 | 5 | 41 | 234 | 74 | 269 | 8.99e-18 | 80.5 |
| MS.gene57718.t1 | AT1G35420 | 24.752 | 202 | 138 | 5 | 41 | 234 | 110 | 305 | 1.33e-17 | 80.5 |
| MS.gene57718.t1 | AT1G35420 | 24.752 | 202 | 138 | 5 | 41 | 234 | 115 | 310 | 1.69e-17 | 80.5 |
Find 58 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACCTCTGGAGGAGTAAT+TGG | 0.233048 | 8.3:+8798804 | None:intergenic |
| TCTGCAGCCTTCACAGCTTC+TGG | 0.233448 | 8.3:+8798239 | None:intergenic |
| CACAACAGCTTGAATGAGTT+TGG | 0.240772 | 8.3:+8799454 | None:intergenic |
| TTGACAGGCCTTTACCTATT+TGG | 0.254835 | 8.3:-8800198 | MS.gene57718:CDS |
| TAGTTATCTTACCTTATAAT+TGG | 0.260032 | 8.3:+8800522 | None:intergenic |
| CTCTTTGTTTCTGATATCTA+TGG | 0.262067 | 8.3:-8800679 | MS.gene57718:intron |
| TGTAAAGGTGTTTCTGCTAT+TGG | 0.325826 | 8.3:-8799677 | MS.gene57718:CDS |
| TTGGAGCTGCTGGTTATTGT+TGG | 0.330733 | 8.3:-8799658 | MS.gene57718:CDS |
| TCATGGTCTTTCATCCAAAT+AGG | 0.333988 | 8.3:+8800184 | None:intergenic |
| TCTCGCATGGCTGGACTATA+AGG | 0.338659 | 8.3:-8798277 | MS.gene57718:CDS |
| TGGAGCTGCTGGTTATTGTT+GGG | 0.356952 | 8.3:-8799657 | MS.gene57718:CDS |
| GATATGAAGCTCCAATTATA+AGG | 0.362101 | 8.3:-8800533 | MS.gene57718:intron |
| CCCATCAAATCTTGCTGGAT+TGG | 0.365656 | 8.3:-8798211 | MS.gene57718:CDS |
| AATATTCCAATTGCTATACT+TGG | 0.381640 | 8.3:-8798840 | MS.gene57718:CDS |
| TTCCTAATGTCTCGCATGGC+TGG | 0.401802 | 8.3:-8798286 | MS.gene57718:CDS |
| GCAGACAAGGTTGCGGCAGC+TGG | 0.406936 | 8.3:-8800277 | MS.gene57718:CDS |
| ACCAATCCAGCAAGATTTGA+TGG | 0.410123 | 8.3:+8798210 | None:intergenic |
| TCAAATTGTTTAATGACCTC+TGG | 0.410127 | 8.3:+8798792 | None:intergenic |
| GTCAACACAGTCATCATCAT+AGG | 0.412431 | 8.3:+8800216 | None:intergenic |
| GCTAAGACTGTGTGTGAACT+TGG | 0.413908 | 8.3:-8799482 | MS.gene57718:CDS |
| CCACTAAAAGAGTTCAGAAT+TGG | 0.423621 | 8.3:+8800775 | None:intergenic |
| TAAACAATTTGAACAAGTCT+TGG | 0.424475 | 8.3:-8798781 | MS.gene57718:CDS |
| GAAAAGTACTAACCGGTTCA+TGG | 0.438615 | 8.3:+8800167 | None:intergenic |
| GGTCTTGATGCTTATGTCAC+TGG | 0.445682 | 8.3:-8800727 | MS.gene57718:CDS |
| AGAAACAAAGAGAATGGCTT+TGG | 0.446253 | 8.3:+8800690 | None:intergenic |
| GTTTCTGCTATTGGAGCTGC+TGG | 0.446884 | 8.3:-8799668 | MS.gene57718:CDS |
| GTCCAGCCATGCGAGACATT+AGG | 0.464533 | 8.3:+8798284 | None:intergenic |
| AGAGGCCCATCAAATCTTGC+TGG | 0.465174 | 8.3:-8798216 | MS.gene57718:CDS |
| AACAAAGAGAATGGCTTTGG+TGG | 0.467774 | 8.3:+8800693 | None:intergenic |
| TCAGCTCCAAGTATAGCAAT+TGG | 0.480783 | 8.3:+8798834 | None:intergenic |
| AGAATGGCTTTGGTGGAAAG+AGG | 0.487874 | 8.3:+8800700 | None:intergenic |
| GGAGCTGCTGGTTATTGTTG+GGG | 0.494209 | 8.3:-8799656 | MS.gene57718:CDS |
| GATATCAGAAACAAAGAGAA+TGG | 0.494737 | 8.3:+8800684 | None:intergenic |
| AGCTGTGAAGGCTGCAGAAG+AGG | 0.497607 | 8.3:-8798234 | MS.gene57718:CDS |
| GGATCGCCGTAGAAGTAGTC+AGG | 0.500455 | 8.3:+8800238 | None:intergenic |
| ATTGAAGCCTTAAAATGTAA+AGG | 0.510706 | 8.3:-8799692 | MS.gene57718:CDS |
| TCCTCTACTGTGATAGATGA+TGG | 0.512687 | 8.3:+8799422 | None:intergenic |
| GTAGTTCCTGACTACTTCTA+CGG | 0.516675 | 8.3:-8800244 | MS.gene57718:CDS |
| TTGGATGAAAGACCATGAAC+CGG | 0.520257 | 8.3:-8800179 | MS.gene57718:intron |
| GTGAAGGAATCTTGCAGACA+AGG | 0.520292 | 8.3:-8800290 | MS.gene57718:intron |
| CTAAAAGAGTTCAGAATTGG+TGG | 0.522787 | 8.3:+8800778 | None:intergenic |
| TGAAGATCCAGAAGCTGTGA+AGG | 0.541502 | 8.3:-8798246 | MS.gene57718:CDS |
| ATGATGATGACTGTGTTGAC+AGG | 0.541546 | 8.3:-8800213 | MS.gene57718:CDS |
| GCTGCTGGTTATTGTTGGGG+TGG | 0.553324 | 8.3:-8799653 | MS.gene57718:intron |
| ACTCATTCAAGCTGTTGTGT+TGG | 0.565853 | 8.3:-8799450 | MS.gene57718:CDS |
| ATATTTCCTAATGTCTCGCA+TGG | 0.567492 | 8.3:-8798290 | MS.gene57718:CDS |
| AATTGTTTAATGACCTCTGG+AGG | 0.570776 | 8.3:+8798795 | None:intergenic |
| TCTTTCATCCAAATAGGTAA+AGG | 0.574508 | 8.3:+8800190 | None:intergenic |
| GAATCTTGCAGACAAGGTTG+CGG | 0.587625 | 8.3:-8800284 | MS.gene57718:CDS |
| TCAACACAGTCATCATCATA+GGG | 0.590362 | 8.3:+8800217 | None:intergenic |
| TGCGGCAGCTGGATATTATG+TGG | 0.595995 | 8.3:-8800266 | MS.gene57718:CDS |
| ATATTACATTTATAGGACAA+AGG | 0.603679 | 8.3:-8799737 | MS.gene57718:intron |
| CCAATCCAGCAAGATTTGAT+GGG | 0.604758 | 8.3:+8798211 | None:intergenic |
| CTAAGACTGTGTGTGAACTT+GGG | 0.604992 | 8.3:-8799481 | MS.gene57718:CDS |
| ATCACAGTAGAGGACATCAA+TGG | 0.607032 | 8.3:-8799413 | MS.gene57718:intron |
| TAAAAGAGTTCAGAATTGGT+GGG | 0.625117 | 8.3:+8800779 | None:intergenic |
| TCCATCATCTATCACAGTAG+AGG | 0.632956 | 8.3:-8799423 | MS.gene57718:CDS |
| TGATCCAATTACTCCTCCAG+AGG | 0.672082 | 8.3:-8798808 | MS.gene57718:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTTAAAAAAAAATCG+AGG | + | chr8.3:8799964-8799983 | None:intergenic | 10.0% |
| !!! | ATAAAAGGTATATTGATTAA+AGG | + | chr8.3:8798413-8798432 | None:intergenic | 15.0% |
| !!! | ATAAAAGTTTGACTTTATAA+CGG | - | chr8.3:8799861-8799880 | MS.gene57718:intron | 15.0% |
| !!! | TTCTTATTTTGAAGTTAAAA+AGG | - | chr8.3:8799035-8799054 | MS.gene57718:intron | 15.0% |
| !!! | TTTTTTTAAATATTAGTCGT+CGG | - | chr8.3:8799969-8799988 | MS.gene57718:intron | 15.0% |
| !! | AAGCATGTGAATTTAATAAA+AGG | + | chr8.3:8798428-8798447 | None:intergenic | 20.0% |
| !! | AATAAGTAATTGCTAGAATA+TGG | + | chr8.3:8800116-8800135 | None:intergenic | 20.0% |
| !! | AATTTGCATATTCTTCAATT+AGG | - | chr8.3:8799638-8799657 | MS.gene57718:intron | 20.0% |
| !! | ACTAGTATTAATGTTCAAAT+TGG | + | chr8.3:8800380-8800399 | None:intergenic | 20.0% |
| !! | ATATTACATTTATAGGACAA+AGG | - | chr8.3:8799258-8799277 | MS.gene57718:intron | 20.0% |
| !! | ATATTATTTGCCTTTGAATA+AGG | + | chr8.3:8799804-8799823 | None:intergenic | 20.0% |
| !! | ATGTATATATGTATGTGTAA+TGG | + | chr8.3:8800288-8800307 | None:intergenic | 20.0% |
| !! | CTTGCATATATTACATTTAT+AGG | - | chr8.3:8799251-8799270 | MS.gene57718:intron | 20.0% |
| !! | GTGCTTAAAAAATTTGTATA+AGG | + | chr8.3:8800341-8800360 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATCGAGGAAAT+GGG | + | chr8.3:8799957-8799976 | None:intergenic | 20.0% |
| !! | TAGTTATCTTACCTTATAAT+TGG | + | chr8.3:8798476-8798495 | None:intergenic | 20.0% |
| !! | TTAAAAAAAAATCGAGGAAA+TGG | + | chr8.3:8799958-8799977 | None:intergenic | 20.0% |
| !!! | CAAATATTTTCCTTATTCAA+AGG | - | chr8.3:8799791-8799810 | MS.gene57718:intron | 20.0% |
| !!! | GATTGTAATACATAATTTTC+TGG | - | chr8.3:8799226-8799245 | MS.gene57718:intron | 20.0% |
| !!! | TAAAAGTTTGACTTTATAAC+GGG | - | chr8.3:8799862-8799881 | MS.gene57718:intron | 20.0% |
| !!! | TACAAATTTTTTAAGCACTT+AGG | - | chr8.3:8800343-8800362 | MS.gene57718:intron | 20.0% |
| ! | AAGCATACCTTATAACAAAT+TGG | + | chr8.3:8798540-8798559 | None:intergenic | 25.0% |
| ! | AAGTGTAATAACATTACACA+AGG | + | chr8.3:8799120-8799139 | None:intergenic | 25.0% |
| ! | AATATTCCAATTGCTATACT+TGG | - | chr8.3:8800155-8800174 | MS.gene57718:intron | 25.0% |
| ! | ATTGAAGCCTTAAAATGTAA+AGG | - | chr8.3:8799303-8799322 | MS.gene57718:intron | 25.0% |
| ! | CATTTGTATATTGAACATCA+TGG | - | chr8.3:8799161-8799180 | MS.gene57718:intron | 25.0% |
| ! | CTACTAAAGATAGCAAAAAT+TGG | + | chr8.3:8798919-8798938 | None:intergenic | 25.0% |
| ! | GAAAAGTTAAAATTCCAACA+GGG | - | chr8.3:8799885-8799904 | MS.gene57718:intron | 25.0% |
| ! | GACAATAAGACTAAAATTGA+TGG | + | chr8.3:8799731-8799750 | None:intergenic | 25.0% |
| ! | TAAACAATTTGAACAAGTCT+TGG | - | chr8.3:8800214-8800233 | MS.gene57718:CDS | 25.0% |
| ! | TAATGGTAAATAACCACAAA+AGG | + | chr8.3:8800271-8800290 | None:intergenic | 25.0% |
| ! | TACATGTCATTCTTCTTATT+TGG | - | chr8.3:8798612-8798631 | MS.gene57718:intron | 25.0% |
| ! | TATTTGTTCTAATAAGCAGT+AGG | + | chr8.3:8799777-8799796 | None:intergenic | 25.0% |
| ! | TGAGAATTTACTCATTATGT+TGG | - | chr8.3:8800585-8800604 | MS.gene57718:intron | 25.0% |
| ! | TGTTCAAATTGGATTAAGTA+TGG | + | chr8.3:8800369-8800388 | None:intergenic | 25.0% |
| ! | TTAACTTCAAAATAAGAAGC+TGG | + | chr8.3:8799033-8799052 | None:intergenic | 25.0% |
| !! | AAAAGTTTGACTTTATAACG+GGG | - | chr8.3:8799863-8799882 | MS.gene57718:intron | 25.0% |
| !! | AGAAACACCTTTACATTTTA+AGG | + | chr8.3:8799313-8799332 | None:intergenic | 25.0% |
| !!! | AATATTCTAGCTTGTCTTTT+AGG | + | chr8.3:8800042-8800061 | None:intergenic | 25.0% |
| !!! | ACATGCTTTATTTGTTTTGT+AGG | - | chr8.3:8798440-8798459 | MS.gene57718:intron | 25.0% |
| !!! | ACTTGAACCAATTTGTTATA+AGG | - | chr8.3:8798530-8798549 | MS.gene57718:intron | 25.0% |
| !!! | CATTTTAAGGCTTCAATTAT+AGG | + | chr8.3:8799300-8799319 | None:intergenic | 25.0% |
| !!! | TGATTAAGTGACTTTTTTTG+CGG | - | chr8.3:8798966-8798985 | MS.gene57718:intron | 25.0% |
| !!! | TTTATTGCTTTTGTTTTTGC+TGG | - | chr8.3:8798345-8798364 | MS.gene57718:intron | 25.0% |
| AAGTCACTTAATCATAACTG+CGG | + | chr8.3:8798960-8798979 | None:intergenic | 30.0% | |
| AATAGTTATAAAACAGGTGG+TGG | + | chr8.3:8800464-8800483 | None:intergenic | 30.0% | |
| AATGACATGTAAAGTCAACA+AGG | + | chr8.3:8798603-8798622 | None:intergenic | 30.0% | |
| AGAGGGAATAGTTATAAAAC+AGG | + | chr8.3:8800470-8800489 | None:intergenic | 30.0% | |
| ATTACACTTGCCACATTTAT+AGG | - | chr8.3:8799131-8799150 | MS.gene57718:intron | 30.0% | |
| CATTAAGCTAACACATCTTA+TGG | + | chr8.3:8799841-8799860 | None:intergenic | 30.0% | |
| GATAGTATCAACTAAAGGTA+TGG | + | chr8.3:8800403-8800422 | None:intergenic | 30.0% | |
| GATATCAGAAACAAAGAGAA+TGG | + | chr8.3:8798314-8798333 | None:intergenic | 30.0% | |
| GATATGAAGCTCCAATTATA+AGG | - | chr8.3:8798462-8798481 | MS.gene57718:intron | 30.0% | |
| GGAAAAGTTAAAATTCCAAC+AGG | - | chr8.3:8799884-8799903 | MS.gene57718:intron | 30.0% | |
| TAAAAGAGTTCAGAATTGGT+GGG | + | chr8.3:8798219-8798238 | None:intergenic | 30.0% | |
| TCAAATTGTTTAATGACCTC+TGG | + | chr8.3:8800206-8800225 | None:intergenic | 30.0% | |
| TCACAGATAGTATCAACTAA+AGG | + | chr8.3:8800408-8800427 | None:intergenic | 30.0% | |
| TCTTTCATCCAAATAGGTAA+AGG | + | chr8.3:8798808-8798827 | None:intergenic | 30.0% | |
| TTGGAATATTAACACCTGAA+AGG | + | chr8.3:8800145-8800164 | None:intergenic | 30.0% | |
| ! | ACTTTTCTAATGACAGTACT+TGG | - | chr8.3:8798844-8798863 | MS.gene57718:CDS | 30.0% |
| ! | CATCATGGATTGTTTCAATT+CGG | - | chr8.3:8799176-8799195 | MS.gene57718:intron | 30.0% |
| ! | TAAGACTAAAATTGATGGCA+TGG | + | chr8.3:8799726-8799745 | None:intergenic | 30.0% |
| ! | TGGTATGGATTTTCAATGTT+TGG | - | chr8.3:8799602-8799621 | MS.gene57718:intron | 30.0% |
| ! | TTTTGTTGATCTGTTTGTGA+AGG | - | chr8.3:8798689-8798708 | MS.gene57718:intron | 30.0% |
| !! | ATACAATTTGGGTTGTATCT+TGG | + | chr8.3:8800075-8800094 | None:intergenic | 30.0% |
| !! | CTCTTTGTTTCTGATATCTA+TGG | - | chr8.3:8798316-8798335 | MS.gene57718:intron | 30.0% |
| !! | GTCATTAGAAAAGTACTAAC+CGG | + | chr8.3:8798838-8798857 | None:intergenic | 30.0% |
| !! | TACTTATTAGTCTTCCTTTC+AGG | - | chr8.3:8800128-8800147 | MS.gene57718:intron | 30.0% |
| AAAGAAGATTCACTGACATC+AGG | + | chr8.3:8800248-8800267 | None:intergenic | 35.0% | |
| AATTGTTTAATGACCTCTGG+AGG | + | chr8.3:8800203-8800222 | None:intergenic | 35.0% | |
| AGAAACAAAGAGAATGGCTT+TGG | + | chr8.3:8798308-8798327 | None:intergenic | 35.0% | |
| AGTAAATTCTCACGTAAGTC+TGG | + | chr8.3:8800577-8800596 | None:intergenic | 35.0% | |
| ATATTTCCTAATGTCTCGCA+TGG | - | chr8.3:8800705-8800724 | MS.gene57718:CDS | 35.0% | |
| ATGCAAACCACCTATAAATG+TGG | + | chr8.3:8799144-8799163 | None:intergenic | 35.0% | |
| ATGTAAAGTCAACAAGGATG+TGG | + | chr8.3:8798597-8798616 | None:intergenic | 35.0% | |
| CCACTAAAAGAGTTCAGAAT+TGG | + | chr8.3:8798223-8798242 | None:intergenic | 35.0% | |
| CTAAAAGAGTTCAGAATTGG+TGG | + | chr8.3:8798220-8798239 | None:intergenic | 35.0% | |
| GAAAACTGCTATATACACAG+AGG | + | chr8.3:8799402-8799421 | None:intergenic | 35.0% | |
| GGGAATAGTTATAAAACAGG+TGG | + | chr8.3:8800467-8800486 | None:intergenic | 35.0% | |
| GTGAGTGTCTTTCATTTGTT+TGG | - | chr8.3:8799364-8799383 | MS.gene57718:intron | 35.0% | |
| TAGTCGTCGGTAATTGTATA+AGG | - | chr8.3:8799982-8800001 | MS.gene57718:intron | 35.0% | |
| TATACATTTCTCTCTGTGTG+TGG | - | chr8.3:8800301-8800320 | MS.gene57718:intron | 35.0% | |
| TCAACACAGTCATCATCATA+GGG | + | chr8.3:8798781-8798800 | None:intergenic | 35.0% | |
| TCATGGTCTTTCATCCAAAT+AGG | + | chr8.3:8798814-8798833 | None:intergenic | 35.0% | |
| ! | CCAATTCTGAACTCTTTTAG+TGG | - | chr8.3:8798220-8798239 | MS.gene57718:CDS | 35.0% |
| ! | CTATCTGTGAAGTGATAATG+TGG | - | chr8.3:8800418-8800437 | MS.gene57718:intron | 35.0% |
| ! | GTGAATCTTCTTTCCTTTTG+TGG | - | chr8.3:8800255-8800274 | MS.gene57718:CDS | 35.0% |
| !! | AACTATTCCCTCTAGCTTTA+GGG | - | chr8.3:8800477-8800496 | MS.gene57718:intron | 35.0% |
| !! | TAACTATTCCCTCTAGCTTT+AGG | - | chr8.3:8800476-8800495 | MS.gene57718:intron | 35.0% |
| !! | TGTAAAGGTGTTTCTGCTAT+TGG | - | chr8.3:8799318-8799337 | MS.gene57718:intron | 35.0% |
| !!! | ATGTATCGTTTTGTTTGTGC+AGG | - | chr8.3:8800665-8800684 | MS.gene57718:intron | 35.0% |
| !!! | GACCACCAATTTTTTCAACA+TGG | + | chr8.3:8798252-8798271 | None:intergenic | 35.0% |
| !!! | TTAAGTGACTTTTTTTGCGG+TGG | - | chr8.3:8798969-8798988 | MS.gene57718:intron | 35.0% |
| AACTAGTCCCTAAAGCTAGA+GGG | + | chr8.3:8800487-8800506 | None:intergenic | 40.0% | |
| AACTGCTATATACACAGAGG+AGG | + | chr8.3:8799399-8799418 | None:intergenic | 40.0% | |
| ACACTTGCCACATTTATAGG+TGG | - | chr8.3:8799134-8799153 | MS.gene57718:intron | 40.0% | |
| ACCAATCCAGCAAGATTTGA+TGG | + | chr8.3:8800788-8800807 | None:intergenic | 40.0% | |
| ACTCATTCAAGCTGTTGTGT+TGG | - | chr8.3:8799545-8799564 | MS.gene57718:intron | 40.0% | |
| ACTGCTATATACACAGAGGA+GGG | + | chr8.3:8799398-8799417 | None:intergenic | 40.0% | |
| AGTAGAGGACATCAATGGTA+TGG | - | chr8.3:8799587-8799606 | MS.gene57718:intron | 40.0% | |
| ATCACAGTAGAGGACATCAA+TGG | - | chr8.3:8799582-8799601 | MS.gene57718:intron | 40.0% | |
| CAACAGGGACGATTGTAAAA+TGG | - | chr8.3:8799900-8799919 | MS.gene57718:intron | 40.0% | |
| CACAACAGCTTGAATGAGTT+TGG | + | chr8.3:8799544-8799563 | None:intergenic | 40.0% | |
| CCAATCCAGCAAGATTTGAT+GGG | + | chr8.3:8800787-8800806 | None:intergenic | 40.0% | |
| CTAAGACTGTGTGTGAACTT+GGG | - | chr8.3:8799514-8799533 | MS.gene57718:intron | 40.0% | |
| GCTAAATGCATTTGTTCTGC+TGG | - | chr8.3:8798660-8798679 | MS.gene57718:intron | 40.0% | |
| GCTCGTCTTAGGCATAATAT+TGG | - | chr8.3:8799422-8799441 | MS.gene57718:CDS | 40.0% | |
| GCTGGCCATGTTGAAAAAAT+TGG | - | chr8.3:8798244-8798263 | MS.gene57718:CDS | 40.0% | |
| GGCCATGTTGAAAAAATTGG+TGG | - | chr8.3:8798247-8798266 | MS.gene57718:CDS | 40.0% | |
| GTAGTTCCTGACTACTTCTA+CGG | - | chr8.3:8798751-8798770 | MS.gene57718:intron | 40.0% | |
| GTCAACACAGTCATCATCAT+AGG | + | chr8.3:8798782-8798801 | None:intergenic | 40.0% | |
| TAACTAGTCCCTAAAGCTAG+AGG | + | chr8.3:8800488-8800507 | None:intergenic | 40.0% | |
| TCAGCTCCAAGTATAGCAAT+TGG | + | chr8.3:8800164-8800183 | None:intergenic | 40.0% | |
| TCCATCATCTATCACAGTAG+AGG | - | chr8.3:8799572-8799591 | MS.gene57718:intron | 40.0% | |
| TCCTCTACTGTGATAGATGA+TGG | + | chr8.3:8799576-8799595 | None:intergenic | 40.0% | |
| TTATTGTCTGCATCCTGACA+TGG | - | chr8.3:8799743-8799762 | MS.gene57718:intron | 40.0% | |
| TTGACAGGCCTTTACCTATT+TGG | - | chr8.3:8798797-8798816 | MS.gene57718:CDS | 40.0% | |
| TTGGATGAAAGACCATGAAC+CGG | - | chr8.3:8798816-8798835 | MS.gene57718:CDS | 40.0% | |
| ! | ATGATGATGACTGTGTTGAC+AGG | - | chr8.3:8798782-8798801 | MS.gene57718:CDS | 40.0% |
| ! | CATTTTACAATCGTCCCTGT+TGG | + | chr8.3:8799902-8799921 | None:intergenic | 40.0% |
| ! | TATAAAACAGGTGGTGGTGA+TGG | + | chr8.3:8800458-8800477 | None:intergenic | 40.0% |
| !! | AACAAAGAGAATGGCTTTGG+TGG | + | chr8.3:8798305-8798324 | None:intergenic | 40.0% |
| !! | GAAAAGTACTAACCGGTTCA+TGG | + | chr8.3:8798831-8798850 | None:intergenic | 40.0% |
| ATAGACAAGAAGCTGCAGCA+TGG | + | chr8.3:8799701-8799720 | None:intergenic | 45.0% | |
| CAAACATCGTAGCGTGCATT+TGG | + | chr8.3:8799097-8799116 | None:intergenic | 45.0% | |
| CCCATCAAATCTTGCTGGAT+TGG | - | chr8.3:8800784-8800803 | MS.gene57718:CDS | 45.0% | |
| GAATCTTGCAGACAAGGTTG+CGG | - | chr8.3:8798711-8798730 | MS.gene57718:intron | 45.0% | |
| GCTAAGACTGTGTGTGAACT+TGG | - | chr8.3:8799513-8799532 | MS.gene57718:intron | 45.0% | |
| GGTCTTGATGCTTATGTCAC+TGG | - | chr8.3:8798268-8798287 | MS.gene57718:CDS | 45.0% | |
| GTAGGTAAACACTCCATGTC+AGG | + | chr8.3:8799759-8799778 | None:intergenic | 45.0% | |
| GTGAAGGAATCTTGCAGACA+AGG | - | chr8.3:8798705-8798724 | MS.gene57718:intron | 45.0% | |
| TGAAGATCCAGAAGCTGTGA+AGG | - | chr8.3:8800749-8800768 | MS.gene57718:CDS | 45.0% | |
| TGATCCAATTACTCCTCCAG+AGG | - | chr8.3:8800187-8800206 | MS.gene57718:CDS | 45.0% | |
| ! | ATGACCTCTGGAGGAGTAAT+TGG | + | chr8.3:8800194-8800213 | None:intergenic | 45.0% |
| ! | CTGAACTCTTTTAGTGGAGC+TGG | - | chr8.3:8798226-8798245 | MS.gene57718:CDS | 45.0% |
| ! | TAGCAGTTTTCGCTCGTCTT+AGG | - | chr8.3:8799411-8799430 | MS.gene57718:intron | 45.0% |
| ! | TGGAGCTGCTGGTTATTGTT+GGG | - | chr8.3:8799338-8799357 | MS.gene57718:intron | 45.0% |
| ! | TTGGAGCTGCTGGTTATTGT+TGG | - | chr8.3:8799337-8799356 | MS.gene57718:intron | 45.0% |
| !! | AGAATGGCTTTGGTGGAAAG+AGG | + | chr8.3:8798298-8798317 | None:intergenic | 45.0% |
| !! | TAAATTATATTATACAATTT+GGG | + | chr8.3:8800086-8800105 | None:intergenic | 5.0% |
| !! | TTAAATTATATTATACAATT+TGG | + | chr8.3:8800087-8800106 | None:intergenic | 5.0% |
| AGAGGCCCATCAAATCTTGC+TGG | - | chr8.3:8800779-8800798 | MS.gene57718:CDS | 50.0% | |
| GGCATGTGAATGCATGACAG+CGG | - | chr8.3:8799056-8799075 | MS.gene57718:intron | 50.0% | |
| GTTTCTGCTATTGGAGCTGC+TGG | - | chr8.3:8799327-8799346 | MS.gene57718:intron | 50.0% | |
| TCTCGCATGGCTGGACTATA+AGG | - | chr8.3:8800718-8800737 | MS.gene57718:CDS | 50.0% | |
| TGCGGCAGCTGGATATTATG+TGG | - | chr8.3:8798729-8798748 | MS.gene57718:intron | 50.0% | |
| TTCCTAATGTCTCGCATGGC+TGG | - | chr8.3:8800709-8800728 | MS.gene57718:CDS | 50.0% | |
| ! | GGAGCTGCTGGTTATTGTTG+GGG | - | chr8.3:8799339-8799358 | MS.gene57718:intron | 50.0% |
| AGCTGTGAAGGCTGCAGAAG+AGG | - | chr8.3:8800761-8800780 | MS.gene57718:CDS | 55.0% | |
| GGATCGCCGTAGAAGTAGTC+AGG | + | chr8.3:8798760-8798779 | None:intergenic | 55.0% | |
| GTCCAGCCATGCGAGACATT+AGG | + | chr8.3:8800714-8800733 | None:intergenic | 55.0% | |
| TCTGCAGCCTTCACAGCTTC+TGG | + | chr8.3:8800759-8800778 | None:intergenic | 55.0% | |
| ! | GCTGCTGGTTATTGTTGGGG+TGG | - | chr8.3:8799342-8799361 | MS.gene57718:intron | 55.0% |
| GCAGACAAGGTTGCGGCAGC+TGG | - | chr8.3:8798718-8798737 | MS.gene57718:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 8798190 | 8800827 | 8798190 | ID=MS.gene57718 |
| chr8.3 | mRNA | 8798190 | 8800827 | 8798190 | ID=MS.gene57718.t1;Parent=MS.gene57718 |
| chr8.3 | exon | 8800680 | 8800827 | 8800680 | ID=MS.gene57718.t1.exon1;Parent=MS.gene57718.t1 |
| chr8.3 | CDS | 8800680 | 8800827 | 8800680 | ID=cds.MS.gene57718.t1;Parent=MS.gene57718.t1 |
| chr8.3 | exon | 8800534 | 8800555 | 8800534 | ID=MS.gene57718.t1.exon2;Parent=MS.gene57718.t1 |
| chr8.3 | CDS | 8800534 | 8800555 | 8800534 | ID=cds.MS.gene57718.t1;Parent=MS.gene57718.t1 |
| chr8.3 | exon | 8800180 | 8800306 | 8800180 | ID=MS.gene57718.t1.exon3;Parent=MS.gene57718.t1 |
| chr8.3 | CDS | 8800180 | 8800306 | 8800180 | ID=cds.MS.gene57718.t1;Parent=MS.gene57718.t1 |
| chr8.3 | exon | 8799654 | 8799744 | 8799654 | ID=MS.gene57718.t1.exon4;Parent=MS.gene57718.t1 |
| chr8.3 | CDS | 8799654 | 8799744 | 8799654 | ID=cds.MS.gene57718.t1;Parent=MS.gene57718.t1 |
| chr8.3 | exon | 8799414 | 8799503 | 8799414 | ID=MS.gene57718.t1.exon5;Parent=MS.gene57718.t1 |
| chr8.3 | CDS | 8799414 | 8799503 | 8799414 | ID=cds.MS.gene57718.t1;Parent=MS.gene57718.t1 |
| chr8.3 | exon | 8798767 | 8798867 | 8798767 | ID=MS.gene57718.t1.exon6;Parent=MS.gene57718.t1 |
| chr8.3 | CDS | 8798767 | 8798867 | 8798767 | ID=cds.MS.gene57718.t1;Parent=MS.gene57718.t1 |
| chr8.3 | exon | 8798190 | 8798330 | 8798190 | ID=MS.gene57718.t1.exon7;Parent=MS.gene57718.t1 |
| chr8.3 | CDS | 8798190 | 8798330 | 8798190 | ID=cds.MS.gene57718.t1;Parent=MS.gene57718.t1 |
| Gene Sequence |
| Protein sequence |
