AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053069


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053069.t1 MTR_6g004780 78.641 309 50 4 6 302 12 316 1.88e-177 494
MS.gene053069.t1 MTR_7g033625 74.113 282 59 2 13 280 11 292 3.77e-158 445
MS.gene053069.t1 MTR_5g096090 48.173 301 145 4 3 293 54 353 3.26e-96 291
MS.gene053069.t1 MTR_3g007930 48.173 301 145 4 3 293 54 353 5.85e-96 290
MS.gene053069.t1 MTR_6g004750 75.281 178 24 2 104 279 19 178 1.95e-89 265
MS.gene053069.t1 MTR_5g096090 51.724 232 112 0 3 234 54 285 2.19e-88 267
MS.gene053069.t1 MTR_3g007930 51.724 232 112 0 3 234 54 285 2.29e-88 267
MS.gene053069.t1 MTR_6g004740 65.926 135 9 2 19 153 1 98 4.96e-53 170
MS.gene053069.t1 MTR_6g004730 50.340 147 12 3 152 297 23 109 1.71e-31 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053069.t1 AT3G27570 55.789 285 113 4 12 289 20 298 5.22e-110 323
MS.gene053069.t1 AT3G27570 55.789 285 113 4 12 289 59 337 2.03e-109 323
MS.gene053069.t1 AT5G40510 50.159 315 137 5 1 312 7 304 5.66e-109 320
MS.gene053069.t1 AT5G40510 50.159 315 137 5 1 312 43 340 2.16e-108 320
MS.gene053069.t1 AT4G26620 44.523 283 156 1 7 288 58 340 1.90e-88 271
MS.gene053069.t1 AT5G55900 45.283 265 137 2 14 272 53 315 2.34e-81 252
MS.gene053069.t1 AT5G55900 44.928 207 106 2 72 272 7 211 4.29e-61 197

Find 74 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGTATTTGATCATTTC+TGG 0.115811 6.2:+674042 None:intergenic
TTAAATTGCCAGCATATTTA+TGG 0.133756 6.2:+673127 None:intergenic
TAATGATGTGCCTGCCTTGC+TGG 0.216928 6.2:-672767 MS.gene053069:CDS
AATGAAGAAATTCAGCTTAG+AGG 0.270475 6.2:-673195 MS.gene053069:CDS
CCTTGCTTACATTGCTCTCT+TGG 0.278877 6.2:+672349 None:intergenic
ATAACGGGAGAAACCGTATT+TGG 0.287816 6.2:+674671 None:intergenic
GAAAGATCAGATTTCTGTTA+TGG 0.295318 6.2:-673169 MS.gene053069:CDS
TCTCCCTTAACTTCAGCAAT+AGG 0.342537 6.2:+672522 None:intergenic
GGTTGTTGCCAAGGTGTTGA+TGG 0.346032 6.2:-672435 MS.gene053069:CDS
CAACACGCGGAGGCCAAGTT+TGG 0.348624 6.2:+674574 None:intergenic
TCTTTCCATTACCTAGCTTC+TGG 0.368837 6.2:+672493 None:intergenic
GCCACCTATTGCTGAAGTTA+AGG 0.375556 6.2:-672526 MS.gene053069:CDS
ACCTGTATTTGATCATTTCT+GGG 0.389616 6.2:+674043 None:intergenic
GAATTGTTTCAGAGGTCAAA+TGG 0.395969 6.2:-672550 MS.gene053069:intron
ATGTACAAGCAAAACCTTGC+TGG 0.406742 6.2:-674645 MS.gene053069:CDS
GTTGTTGCCAAGGTGTTGAT+GGG 0.422367 6.2:-672434 MS.gene053069:CDS
TTGATTGAAAAGGGGTTTGA+AGG 0.422542 6.2:-673379 MS.gene053069:intron
GTCGTCAACACCGCCAAATA+CGG 0.433500 6.2:-674684 MS.gene053069:CDS
AGTAACAATGAAAACGTTGT+TGG 0.435959 6.2:-672456 MS.gene053069:CDS
AGCAAGGCAGGCACATCATT+AGG 0.442495 6.2:+672769 None:intergenic
TCCCAGAAATGATCAAATAC+AGG 0.447003 6.2:-674044 MS.gene053069:intron
TTGAGCTTGTCAATGAGAAC+AGG 0.452415 6.2:+673216 None:intergenic
CCACCTATTGCTGAAGTTAA+GGG 0.453799 6.2:-672525 MS.gene053069:CDS
TTGCTTGTACATCTCATAAC+GGG 0.455798 6.2:+674656 None:intergenic
ATGTGTTGGTCCAGCAAGGC+AGG 0.460735 6.2:+672757 None:intergenic
AATTGTTTCAGAGGTCAAAT+GGG 0.469390 6.2:-672549 MS.gene053069:intron
TTTGGCGGTGTTGACGACTT+TGG 0.482112 6.2:+674689 None:intergenic
GTTATGGCTTGTTCTCATGT+TGG 0.488135 6.2:-673153 MS.gene053069:CDS
GATGTAAGGTGTGGTGTTTG+TGG 0.500003 6.2:-673240 MS.gene053069:CDS
TAGTTTCTTCAATGATGTAA+TGG 0.500573 6.2:-673343 MS.gene053069:CDS
ATGTAAGGTGTGGTGTTTGT+GGG 0.503942 6.2:-673239 MS.gene053069:CDS
TTTAGGAAGGGGATGGTCAT+CGG 0.507760 6.2:+674545 None:intergenic
AATGACCAGAAGCTAGGTAA+TGG 0.508691 6.2:-672498 MS.gene053069:CDS
GTTACAAGAACCACCAAACT+TGG 0.508873 6.2:-674587 MS.gene053069:CDS
AACGTTGTTGGTTGTTGCCA+AGG 0.511391 6.2:-672444 MS.gene053069:CDS
CACGCGGAGGCCAAGTTTGG+TGG 0.519675 6.2:+674577 None:intergenic
CTCATGGAAGTCGTGATGTA+AGG 0.523198 6.2:-673254 MS.gene053069:CDS
AATTTAATCACATTTAGTCC+TGG 0.524943 6.2:-673111 MS.gene053069:CDS
ATGGCTTGTTCTCATGTTGG+TGG 0.526341 6.2:-673150 MS.gene053069:CDS
CCAAGAGAGCAATGTAAGCA+AGG 0.548987 6.2:-672349 MS.gene053069:CDS
TTTGCTTGTACATCTCATAA+CGG 0.550121 6.2:+674655 None:intergenic
CCTCTCCCTTGGCAATGTGT+TGG 0.560206 6.2:+672743 None:intergenic
ACATTTAGTCCTGGACCAGA+TGG 0.561723 6.2:-673102 MS.gene053069:CDS
GGAGAAAATGACCAGAAGCT+AGG 0.564370 6.2:-672504 MS.gene053069:CDS
CAAGAGAGCAATGTAAGCAA+GGG 0.568548 6.2:-672348 MS.gene053069:CDS
GAAAATTAAGACGTCGCCGT+CGG 0.574111 6.2:+674065 None:intergenic
GGCAATGTGTTGGTCCAGCA+AGG 0.575915 6.2:+672753 None:intergenic
GAAGAGGACGGCTTCTCCGA+CGG 0.576918 6.2:-674081 MS.gene053069:CDS
CCCTTAACTTCAGCAATAGG+TGG 0.579323 6.2:+672525 None:intergenic
TCTTGCACTCCACCATCCCA+TGG 0.587486 6.2:+673309 None:intergenic
GTTGGTGGCCATAAATATGC+TGG 0.604192 6.2:-673135 MS.gene053069:CDS
TGTGAGACGATTGAAGAGGA+CGG 0.605377 6.2:-674093 MS.gene053069:CDS
AAGAAACCCCATCAACACCT+TGG 0.609631 6.2:+672427 None:intergenic
AGGATTCAACGGTTCCAGCA+AGG 0.612470 6.2:+674631 None:intergenic
ACGGGAGAAACCGTATTTGG+CGG 0.614540 6.2:+674674 None:intergenic
AGGAAGGGGATGGTCATCGG+AGG 0.620917 6.2:+674548 None:intergenic
TCATCGGAGGCTTCAACACG+CGG 0.625032 6.2:+674561 None:intergenic
AGTTTGTGAGACGATTGAAG+AGG 0.628975 6.2:-674097 MS.gene053069:CDS
CCAACACATTGCCAAGGGAG+AGG 0.629052 6.2:-672743 MS.gene053069:CDS
TAGAAAGACATGACGATCGT+AGG 0.630947 6.2:+674611 None:intergenic
GGAGTGCAAGATGTGATAGC+AGG 0.631484 6.2:-673297 MS.gene053069:CDS
GCTGGACCAACACATTGCCA+AGG 0.631513 6.2:-672749 MS.gene053069:CDS
ATGACGATCGTAGGATTCAA+CGG 0.636518 6.2:+674620 None:intergenic
AGTTGTAAACCATGGGATGG+TGG 0.642180 6.2:-673318 MS.gene053069:CDS
TTGTTGCCAAGGTGTTGATG+GGG 0.644778 6.2:-672433 MS.gene053069:CDS
CTGGACCAACACATTGCCAA+GGG 0.652296 6.2:-672748 MS.gene053069:CDS
AAGAGAGCAATGTAAGCAAG+GGG 0.652868 6.2:-672347 MS.gene053069:CDS
AATGGTGAGTTGTAAACCAT+GGG 0.656762 6.2:-673325 MS.gene053069:CDS
GACGACTTTGGAAGAAGACA+TGG 0.661061 6.2:+674701 None:intergenic
TAATGGTGAGTTGTAAACCA+TGG 0.677466 6.2:-673326 MS.gene053069:CDS
ATTGTTTCAGAGGTCAAATG+GGG 0.679466 6.2:-672548 MS.gene053069:intron
GTGAGTTGTAAACCATGGGA+TGG 0.686051 6.2:-673321 MS.gene053069:CDS
TCGGAGGCTTCAACACGCGG+AGG 0.731326 6.2:+674564 None:intergenic
GGAAGTCGTGATGTAAGGTG+TGG 0.748872 6.2:-673249 MS.gene053069:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTATATATTATATTGAA+TGG - chr6.2:674407-674426 MS.gene053069:intron 10.0%
!! ATTCAATATAATATATAAGA+TGG + chr6.2:674408-674427 None:intergenic 10.0%
!! AAAAATCAATTCTCTTATTA+TGG - chr6.2:673257-673276 MS.gene053069:CDS 15.0%
!! AAACATTTCTTAGTTAATAA+TGG + chr6.2:673026-673045 None:intergenic 15.0%
!!! ATAACTAAATTGATATTTTG+AGG - chr6.2:672742-672761 MS.gene053069:CDS 15.0%
!!! TTAATGTTTTATATTGTGAA+TGG - chr6.2:673591-673610 MS.gene053069:intron 15.0%
!! AAATTGGATACAAATTAACA+TGG + chr6.2:672832-672851 None:intergenic 20.0%
!! AATCCCTAAAAAAAAAAGAA+TGG + chr6.2:673057-673076 None:intergenic 20.0%
!! AGAAAGAATTAATATACAAG+TGG + chr6.2:673130-673149 None:intergenic 20.0%
!!! AACACCATTCTTTTTTTTTT+AGG - chr6.2:673050-673069 MS.gene053069:intron 20.0%
!!! ACACCATTCTTTTTTTTTTA+GGG - chr6.2:673051-673070 MS.gene053069:intron 20.0%
!!! ACTTAAGTCTTTAAAAATGT+TGG + chr6.2:672617-672636 None:intergenic 20.0%
!!! ATTTGAGTTAACATCAAAAT+TGG + chr6.2:672848-672867 None:intergenic 20.0%
!!! CAATTAGTCCTTTTTTTTAT+TGG + chr6.2:674055-674074 None:intergenic 20.0%
!!! GACATTAGAATTTGTTTATT+TGG - chr6.2:674382-674401 MS.gene053069:intron 20.0%
!!! TGTTAACTCAAATTTCATTT+TGG - chr6.2:672855-672874 MS.gene053069:intron 20.0%
!!! TTTGAAAGTAATGTTTGTTA+AGG - chr6.2:673385-673404 MS.gene053069:intron 20.0%
! AATTGTATGAATTGTTTCAG+AGG - chr6.2:674458-674477 MS.gene053069:intron 25.0%
! AATTTAATCACATTTAGTCC+TGG - chr6.2:673905-673924 MS.gene053069:intron 25.0%
! CAAATATTTAATTGCAGGTA+TGG - chr6.2:674214-674233 MS.gene053069:intron 25.0%
! CATACCTGCAATTAAATATT+TGG + chr6.2:674216-674235 None:intergenic 25.0%
! CATAGTTCAAAACAAATAAG+AGG + chr6.2:673985-674004 None:intergenic 25.0%
! CATCAACACCAATAAAAAAA+AGG - chr6.2:674044-674063 MS.gene053069:intron 25.0%
! CTCTATCAAGATATATGATA+AGG - chr6.2:673351-673370 MS.gene053069:CDS 25.0%
! CTTACCAAATATTTAATTGC+AGG - chr6.2:674209-674228 MS.gene053069:intron 25.0%
! TAGTTTCTTCAATGATGTAA+TGG - chr6.2:673673-673692 MS.gene053069:intron 25.0%
! TTAAATTGCCAGCATATTTA+TGG + chr6.2:673892-673911 None:intergenic 25.0%
!!! AAGTTTTGAGCAAAATAAAG+TGG - chr6.2:674625-674644 MS.gene053069:CDS 25.0%
!!! ATTTTTTATCCAAAAGCATG+TGG - chr6.2:672768-672787 MS.gene053069:CDS 25.0%
!!! TGTTGTTGTTTGATTGAAAA+GGG - chr6.2:673628-673647 MS.gene053069:intron 25.0%
!!! TTGATGGATTTTATTGTTGT+CGG - chr6.2:674173-674192 MS.gene053069:intron 25.0%
AATGAAGAAATTCAGCTTAG+AGG - chr6.2:673821-673840 MS.gene053069:intron 30.0%
AATTGTTTCAGAGGTCAAAT+GGG - chr6.2:674467-674486 MS.gene053069:intron 30.0%
ACCTGTATTTGATCATTTCT+GGG + chr6.2:672976-672995 None:intergenic 30.0%
AGTAACAATGAAAACGTTGT+TGG - chr6.2:674560-674579 MS.gene053069:CDS 30.0%
ATGGAAAAATTATGGGTCAT+TGG - chr6.2:673933-673952 MS.gene053069:intron 30.0%
CAAAAATGACATTGTCATCA+AGG - chr6.2:672520-672539 MS.gene053069:CDS 30.0%
CTCTACAAAATTTGTAGAGT+CGG - chr6.2:672590-672609 MS.gene053069:intron 30.0%
GAAAGATCAGATTTCTGTTA+TGG - chr6.2:673847-673866 MS.gene053069:intron 30.0%
GAAATCGTAAAAAATGTGCT+AGG + chr6.2:673108-673127 None:intergenic 30.0%
TAATTCTTTCTTTCTCTCCT+TGG - chr6.2:673139-673158 MS.gene053069:CDS 30.0%
TACCTGTATTTGATCATTTC+TGG + chr6.2:672977-672996 None:intergenic 30.0%
TGGATTTACGATTGTTAGTT+TGG - chr6.2:672875-672894 MS.gene053069:intron 30.0%
TTTGCTTGTACATCTCATAA+CGG + chr6.2:672364-672383 None:intergenic 30.0%
! CTCTACAAATTTTGTAGAGT+CGG + chr6.2:672589-672608 None:intergenic 30.0%
! TTTCGTGTTTTCATATTCCA+AGG + chr6.2:673159-673178 None:intergenic 30.0%
!! GTGTTGTTGTTTGATTGAAA+AGG - chr6.2:673627-673646 MS.gene053069:intron 30.0%
!! GTTGTTGTTTGATTGAAAAG+GGG - chr6.2:673629-673648 MS.gene053069:intron 30.0%
AATGGTGAGTTGTAAACCAT+GGG - chr6.2:673691-673710 MS.gene053069:intron 35.0%
AGGTCATACAAAAACTATGG+AGG - chr6.2:674293-674312 MS.gene053069:intron 35.0%
ATTATGGTTCTCTCTCTAAC+TGG - chr6.2:673273-673292 MS.gene053069:CDS 35.0%
ATTGTTTCAGAGGTCAAATG+GGG - chr6.2:674468-674487 MS.gene053069:intron 35.0%
CAAGATGTGAACTTGCATTA+GGG - chr6.2:672647-672666 MS.gene053069:intron 35.0%
GAATTGTTTCAGAGGTCAAA+TGG - chr6.2:674466-674485 MS.gene053069:intron 35.0%
GAGAGGTCATACAAAAACTA+TGG - chr6.2:674290-674309 MS.gene053069:intron 35.0%
GGACCAGATGGAAAAATTAT+GGG - chr6.2:673926-673945 MS.gene053069:intron 35.0%
TAATGGTGAGTTGTAAACCA+TGG - chr6.2:673690-673709 MS.gene053069:intron 35.0%
TCCCAGAAATGATCAAATAC+AGG - chr6.2:672972-672991 MS.gene053069:intron 35.0%
TGGACCAGATGGAAAAATTA+TGG - chr6.2:673925-673944 MS.gene053069:intron 35.0%
TTGATTGAAAAGGGGTTTGA+AGG - chr6.2:673637-673656 MS.gene053069:intron 35.0%
TTGCTTGTACATCTCATAAC+GGG + chr6.2:672363-672382 None:intergenic 35.0%
! AAACCCTAACATGTGTTGAT+TGG - chr6.2:672794-672813 MS.gene053069:intron 35.0%
! AAAGTGGTTGCAACACTTTT+AGG + chr6.2:672491-672510 None:intergenic 35.0%
! ATAATTTTTCCATCTGGTCC+AGG + chr6.2:673926-673945 None:intergenic 35.0%
! TGACCCATAATTTTTCCATC+TGG + chr6.2:673932-673951 None:intergenic 35.0%
! TTACACGTGTTGATATCATG+TGG - chr6.2:674082-674101 MS.gene053069:CDS 35.0%
!! TATATTTTTGTGTGCGCTCA+TGG - chr6.2:673746-673765 MS.gene053069:intron 35.0%
!!! ATTTTTGCGAGCTTTGAAAG+TGG + chr6.2:672507-672526 None:intergenic 35.0%
!!! CGGTGTTACAAAGATTTTGA+TGG - chr6.2:674157-674176 MS.gene053069:intron 35.0%
AAGAGAGCAATGTAAGCAAG+GGG - chr6.2:674669-674688 MS.gene053069:CDS 40.0%
AAGGCCAATCAACACATGTT+AGG + chr6.2:672801-672820 None:intergenic 40.0%
AATGACCAGAAGCTAGGTAA+TGG - chr6.2:674518-674537 MS.gene053069:CDS 40.0%
AATTAACATGGCCGACCTAA+AGG + chr6.2:672820-672839 None:intergenic 40.0%
AGGCCAATCAACACATGTTA+GGG + chr6.2:672800-672819 None:intergenic 40.0%
AGTTTGTGAGACGATTGAAG+AGG - chr6.2:672919-672938 MS.gene053069:intron 40.0%
ATGACGATCGTAGGATTCAA+CGG + chr6.2:672399-672418 None:intergenic 40.0%
ATGTAAGCAAGGGGAAAAAG+TGG - chr6.2:674678-674697 MS.gene053069:CDS 40.0%
ATGTAAGGTGTGGTGTTTGT+GGG - chr6.2:673777-673796 MS.gene053069:intron 40.0%
ATGTACAAGCAAAACCTTGC+TGG - chr6.2:672371-672390 MS.gene053069:CDS 40.0%
CAAGAGAGCAATGTAAGCAA+GGG - chr6.2:674668-674687 MS.gene053069:CDS 40.0%
CCAAGATGTGAACTTGCATT+AGG - chr6.2:672646-672665 MS.gene053069:intron 40.0%
CCACCTATTGCTGAAGTTAA+GGG - chr6.2:674491-674510 MS.gene053069:intron 40.0%
CCTAATGCAAGTTCACATCT+TGG + chr6.2:672649-672668 None:intergenic 40.0%
GTCTGATGTTCGATATGTGT+CGG + chr6.2:674117-674136 None:intergenic 40.0%
GTTACAAGAACCACCAAACT+TGG - chr6.2:672429-672448 MS.gene053069:CDS 40.0%
TAGAAAGACATGACGATCGT+AGG + chr6.2:672408-672427 None:intergenic 40.0%
TCTCCCTTAACTTCAGCAAT+AGG + chr6.2:674497-674516 None:intergenic 40.0%
TCTTTCCATTACCTAGCTTC+TGG + chr6.2:674526-674545 None:intergenic 40.0%
TTGAGCTTGTCAATGAGAAC+AGG + chr6.2:673803-673822 None:intergenic 40.0%
TTGTAGAGTCGGTGCAAATT+AGG + chr6.2:672578-672597 None:intergenic 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG - chr6.2:674137-674156 MS.gene053069:intron 40.0%
! AGTGAAAAGCACACATGAAG+TGG + chr6.2:674322-674341 None:intergenic 40.0%
! ATAACGGGAGAAACCGTATT+TGG + chr6.2:672348-672367 None:intergenic 40.0%
! GTGTGCTTTTCACTTTCACA+TGG - chr6.2:674328-674347 MS.gene053069:intron 40.0%
! TTTTTGTATGACCTCTCCCT+TGG + chr6.2:674287-674306 None:intergenic 40.0%
!! ACATGTGTTGATTGGCCTTT+AGG - chr6.2:672802-672821 MS.gene053069:intron 40.0%
!! GGTTGCAACACTTTTAGGAA+GGG + chr6.2:672486-672505 None:intergenic 40.0%
!! GTTATGGCTTGTTCTCATGT+TGG - chr6.2:673863-673882 MS.gene053069:intron 40.0%
!! GTTGCAACACTTTTAGGAAG+GGG + chr6.2:672485-672504 None:intergenic 40.0%
!! TGGTTGCAACACTTTTAGGA+AGG + chr6.2:672487-672506 None:intergenic 40.0%
AAGAAACCCCATCAACACCT+TGG + chr6.2:674592-674611 None:intergenic 45.0%
ACATTTAGTCCTGGACCAGA+TGG - chr6.2:673914-673933 MS.gene053069:intron 45.0%
AGTTGTAAACCATGGGATGG+TGG - chr6.2:673698-673717 MS.gene053069:intron 45.0%
CCAAGAGAGCAATGTAAGCA+AGG - chr6.2:674667-674686 MS.gene053069:CDS 45.0%
CCCTTAACTTCAGCAATAGG+TGG + chr6.2:674494-674513 None:intergenic 45.0%
CCTTGCTTACATTGCTCTCT+TGG + chr6.2:674670-674689 None:intergenic 45.0%
CTCATGGAAGTCGTGATGTA+AGG - chr6.2:673762-673781 MS.gene053069:intron 45.0%
CTTGCATTAGGGAGGATTTG+AGG - chr6.2:672658-672677 MS.gene053069:intron 45.0%
GAAAATTAAGACGTCGCCGT+CGG + chr6.2:672954-672973 None:intergenic 45.0%
GATGTAAGGTGTGGTGTTTG+TGG - chr6.2:673776-673795 MS.gene053069:intron 45.0%
GATGTGAACTTGCATTAGGG+AGG - chr6.2:672650-672669 MS.gene053069:intron 45.0%
GCACTCACGAACATGGAAAT+CGG - chr6.2:674007-674026 MS.gene053069:intron 45.0%
GCCACCTATTGCTGAAGTTA+AGG - chr6.2:674490-674509 MS.gene053069:intron 45.0%
GGAGAAAATGACCAGAAGCT+AGG - chr6.2:674512-674531 MS.gene053069:CDS 45.0%
GTGAGTTGTAAACCATGGGA+TGG - chr6.2:673695-673714 MS.gene053069:intron 45.0%
TAGAGTCGGTGCAAATTAGG+AGG + chr6.2:672575-672594 None:intergenic 45.0%
TGTGAGACGATTGAAGAGGA+CGG - chr6.2:672923-672942 MS.gene053069:intron 45.0%
TTTAGGAAGGGGATGGTCAT+CGG + chr6.2:672474-672493 None:intergenic 45.0%
! AACGTTGTTGGTTGTTGCCA+AGG - chr6.2:674572-674591 MS.gene053069:CDS 45.0%
! CTATGAAGCACTCACGAACA+TGG - chr6.2:674000-674019 MS.gene053069:intron 45.0%
! GGGTTTAAGCCACATGCTTT+TGG + chr6.2:672780-672799 None:intergenic 45.0%
! TGTTCGATATGTGTCGGTGT+CGG + chr6.2:674111-674130 None:intergenic 45.0%
!! ATGGCTTGTTCTCATGTTGG+TGG - chr6.2:673866-673885 MS.gene053069:intron 45.0%
!! CAACACTTTTAGGAAGGGGA+TGG + chr6.2:672481-672500 None:intergenic 45.0%
!! GTGTTGATTGGCCTTTAGGT+CGG - chr6.2:672806-672825 MS.gene053069:intron 45.0%
!! GTTGGTGGCCATAAATATGC+TGG - chr6.2:673881-673900 MS.gene053069:intron 45.0%
!! GTTGTTGCCAAGGTGTTGAT+GGG - chr6.2:674582-674601 MS.gene053069:CDS 45.0%
!! TTGTTGCCAAGGTGTTGATG+GGG - chr6.2:674583-674602 MS.gene053069:CDS 45.0%
ACGGGAGAAACCGTATTTGG+CGG + chr6.2:672345-672364 None:intergenic 50.0%
AGCAAGGCAGGCACATCATT+AGG + chr6.2:674250-674269 None:intergenic 50.0%
AGGATTCAACGGTTCCAGCA+AGG + chr6.2:672388-672407 None:intergenic 50.0%
CTGGACCAACACATTGCCAA+GGG - chr6.2:674268-674287 MS.gene053069:intron 50.0%
GGAAGTCGTGATGTAAGGTG+TGG - chr6.2:673767-673786 MS.gene053069:intron 50.0%
GGAGTGCAAGATGTGATAGC+AGG - chr6.2:673719-673738 MS.gene053069:intron 50.0%
GTCGTCAACACCGCCAAATA+CGG - chr6.2:672332-672351 MS.gene053069:CDS 50.0%
TAATGATGTGCCTGCCTTGC+TGG - chr6.2:674249-674268 MS.gene053069:intron 50.0%
!! GGTTGTTGCCAAGGTGTTGA+TGG - chr6.2:674581-674600 MS.gene053069:CDS 50.0%
!! TTTGGCGGTGTTGACGACTT+TGG + chr6.2:672330-672349 None:intergenic 50.0%
CCAACACATTGCCAAGGGAG+AGG - chr6.2:674273-674292 MS.gene053069:intron 55.0%
CCTCTCCCTTGGCAATGTGT+TGG + chr6.2:674276-674295 None:intergenic 55.0%
GCTGGACCAACACATTGCCA+AGG - chr6.2:674267-674286 MS.gene053069:intron 55.0%
TCATCGGAGGCTTCAACACG+CGG + chr6.2:672458-672477 None:intergenic 55.0%
TCTTGCACTCCACCATCCCA+TGG + chr6.2:673710-673729 None:intergenic 55.0%
! ATGTGTTGGTCCAGCAAGGC+AGG + chr6.2:674262-674281 None:intergenic 55.0%
! GGCAATGTGTTGGTCCAGCA+AGG + chr6.2:674266-674285 None:intergenic 55.0%
AGGAAGGGGATGGTCATCGG+AGG + chr6.2:672471-672490 None:intergenic 60.0%
CAACACGCGGAGGCCAAGTT+TGG + chr6.2:672445-672464 None:intergenic 60.0%
GAAGAGGACGGCTTCTCCGA+CGG - chr6.2:672935-672954 MS.gene053069:intron 60.0%
CACGCGGAGGCCAAGTTTGG+TGG + chr6.2:672442-672461 None:intergenic 65.0%
TCGGAGGCTTCAACACGCGG+AGG + chr6.2:672455-672474 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 672317 674721 672317 ID=MS.gene053069
chr6.2 mRNA 672317 674721 672317 ID=MS.gene053069.t1;Parent=MS.gene053069
chr6.2 exon 674497 674721 674497 ID=MS.gene053069.t1.exon1;Parent=MS.gene053069.t1
chr6.2 CDS 674497 674721 674497 ID=cds.MS.gene053069.t1;Parent=MS.gene053069.t1
chr6.2 exon 674045 674130 674045 ID=MS.gene053069.t1.exon2;Parent=MS.gene053069.t1
chr6.2 CDS 674045 674130 674045 ID=cds.MS.gene053069.t1;Parent=MS.gene053069.t1
chr6.2 exon 673084 673389 673084 ID=MS.gene053069.t1.exon3;Parent=MS.gene053069.t1
chr6.2 CDS 673084 673389 673084 ID=cds.MS.gene053069.t1;Parent=MS.gene053069.t1
chr6.2 exon 672724 672807 672724 ID=MS.gene053069.t1.exon4;Parent=MS.gene053069.t1
chr6.2 CDS 672724 672807 672724 ID=cds.MS.gene053069.t1;Parent=MS.gene053069.t1
chr6.2 exon 672317 672560 672317 ID=MS.gene053069.t1.exon5;Parent=MS.gene053069.t1
chr6.2 CDS 672317 672560 672317 ID=cds.MS.gene053069.t1;Parent=MS.gene053069.t1
Gene Sequence

>MS.gene053069

ATGTCTTCTTCCAAAGTCGTCAACACCGCCAAATACGGTTTCTCCCGTTATGAGATGTACAAGCAAAACCTTGCTGGAACCGTTGAATCCTACGATCGTCATGTCTTTCTATGTTACAAGAACCACCAAACTTGGCCTCCGCGTGTTGAAGCCTCCGATGACCATCCCCTTCCTAAAAGTGTTGCAACCACTTTCAAAGCTCGCAAAAATGACATTGTCATCAAGGTATTACTTGTTAATTCATTGCTTCATAGTCCTCCTAATTTGCACCGACTCTACAAAATTTGTAGAGTCGGTCCAACATTTTTAAAGACTTAAGTTATGCTAGTCCAAGATGTGAACTTGCATTAGGGAGGATTTGAGGCTGTTATCTTGAACAACTGACTTGAGTAAAATTTATAACTAATTTATCGTATTATATGTTTATAACTAAATTGATATTTTGAGGCGTATTTTTTATCCAAAAGCATGTGGCTTAAACCCTAACATGTGTTGATTGGCCTTTAGGTCGGCCATGTTAATTTGTATCCAATTTTGATGTTAACTCAAATTTCATTTTGGATTTACGATTGTTAGTTTGGTTGTTTGTAGACGAAAATCACAGTTTGTGAGACGATTGAAGAGGACGGCTTCTCCGACGGCGACGTCTTAATTTTCCCAGAAATGATCAAATACAGGTATGTTATATTGTTATTACACAAGTAAACCATTATTAACTAAGAAATGTTTTTTAAACACCATTCTTTTTTTTTTAGGGATTAAACATCATTCTTATAAGATGTCTTATTCCTAGCACATTTTTTACGATTTCCACTTGTATATTAATTCTTTCTTTCTCTCCTTGGAATATGAAAACACGAAAACTAAGTGTATTTTATACGTACTTAGATATACAACATTAAAATTGTTTATACAAATATCAATGCTCTCAGTAAAAAAAAAAAATCAATTCTCTTATTATGGTTCTCTCTCTAACTGGATTATTTGTTAATTAATTCTAAAAATTTAAGTTTTATTTTTTAGTAAGAATTTATCTCTATCAAGATATATGATAAGGCGTGATTAGAATTTGAAAGTAATGTTTGTTAAGGATCTTTGTTACAATTTGAAAGTCACAAACATATAAGCATGCTTGTTAGAAAGATAATTTTAATCAAAATTGAATTTTAGAAAAACTATTTTTATAATTTACGCTCGTTAGCGCAATAAAATGAAACGACACACGTCGAAACTGATTTGTATTTTATTGTGATTTAAGATTTCAGTGTTGTTACTTAATGTTTTATATTGTGAATGGTGTGTGTGTTGTTGTGTTGTTGTTTGATTGAAAAGGGGTTTGAAGGAATCAAACGTTGATAGTTTCTTCAATGATGTAATGGTGAGTTGTAAACCATGGGATGGTGGAGTGCAAGATGTGATAGCAGGTTCATATATTTTTGTGTGCGCTCATGGAAGTCGTGATGTAAGGTGTGGTGTTTGTGGGCCTGTTCTCATTGACAAGCTCAATGAAGAAATTCAGCTTAGAGGATTGAAAGATCAGATTTCTGTTATGGCTTGTTCTCATGTTGGTGGCCATAAATATGCTGGCAATTTAATCACATTTAGTCCTGGACCAGATGGAAAAATTATGGGTCATTGGTAAGCTCTCACGCTTGTTTTATTCATCCTCTTATTTGTTTTGAACTATGAAGCACTCACGAACATGGAAATCGGACACGACACAAATACATCAACACCAATAAAAAAAAGGACTAATTGAACGTAATTACACGTGTTGATATCATGTGGTGTCCGACACCGACACATATCGAACATCAGACACGTCTTTCATCAGAAGTGTCGGTGTTACAAAGATTTTGATGGATTTTATTGTTGTCGGTTAAATTGTAGTGCTTACCAAATATTTAATTGCAGGTATGGCTATGTTACTCCTAATGATGTGCCTGCCTTGCTGGACCAACACATTGCCAAGGGAGAGGTCATACAAAAACTATGGAGGTAACCACTTCATGTGTGCTTTTCACTTTCACATGGATATTTTATTAGTTGATCAATGTTAGATATCGACATTAGAATTTGTTTATTTGGCCATCTTATATATTATATTGAATGGACTTGTCAAGATGATCAATGTTGAATTTAATTGTATGAATTGTTTCAGAGGTCAAATGGGGCCACCTATTGCTGAAGTTAAGGGAGAAAATGACCAGAAGCTAGGTAATGGAAAGAATATTAATGTAGAAAGTAACAATGAAAACGTTGTTGGTTGTTGCCAAGGTGTTGATGGGGTTTCTTGTTGCAAAAGTCAAAGTTTTGAGCAAAATAAAGTGGTTGATGAAACTGATAAAAACCAAGAGAGCAATGTAAGCAAGGGGAAAAAGTGGTTCATGAATCTCTTACCTTAA

Protein sequence

>MS.gene053069.t1

MSSSKVVNTAKYGFSRYEMYKQNLAGTVESYDRHVFLCYKNHQTWPPRVEASDDHPLPKSVATTFKARKNDIVIKTKITVCETIEEDGFSDGDVLIFPEMIKYRGLKESNVDSFFNDVMVSCKPWDGGVQDVIAGSYIFVCAHGSRDVRCGVCGPVLIDKLNEEIQLRGLKDQISVMACSHVGGHKYAGNLITFSPGPDGKIMGHWYGYVTPNDVPALLDQHIAKGEVIQKLWRGQMGPPIAEVKGENDQKLGNGKNINVESNNENVVGCCQGVDGVSCCKSQSFEQNKVVDETDKNQESNVSKGKKWFMNLLP