Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58804.t1 | XP_003613486.1 | 85.7 | 189 | 27 | 0 | 1 | 189 | 4 | 192 | 4.00E-71 | 277.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58804.t1 | F4I3V6 | 63.3 | 90 | 33 | 0 | 89 | 178 | 97 | 186 | 3.4e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58804.t1 | G7K712 | 85.7 | 189 | 27 | 0 | 1 | 189 | 4 | 192 | 2.9e-71 | 277.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene58804 | 0.852115 | 5.71E-61 | -1.69E-46 |
| MS.gene050301 | MS.gene58804 | 0.820102 | 8.19E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene58804 | 0.806568 | 7.72E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene58804 | 0.828306 | 9.67E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene58804 | 0.814604 | 1.42E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene58804 | 0.835414 | 1.70E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene58804 | 0.833489 | 5.18E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene58804 | 0.86112 | 1.28E-63 | -1.69E-46 |
| MS.gene052310 | MS.gene58804 | 0.838518 | 2.74E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene58804 | 0.82058 | 6.36E-53 | -1.69E-46 |
| MS.gene053073 | MS.gene58804 | 0.806107 | 9.66E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene58804 | 0.809699 | 1.66E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene58804 | 0.848287 | 6.75E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene58804 | 0.818387 | 2.01E-52 | -1.69E-46 |
| MS.gene053928 | MS.gene58804 | 0.824931 | 6.18E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene58804 | 0.823302 | 1.49E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene58804 | 0.813901 | 2.02E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene58804 | 0.83742 | 5.25E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene58804 | 0.820754 | 5.80E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene58804 | 0.806908 | 6.55E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene58804 | 0.809756 | 1.62E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene58804 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene056314 | MS.gene58804 | 0.800515 | 1.39E-48 | -1.69E-46 |
| MS.gene056407 | MS.gene58804 | 0.842853 | 2.01E-58 | -1.69E-46 |
| MS.gene056609 | MS.gene58804 | 0.813129 | 2.99E-51 | -1.69E-46 |
| MS.gene056719 | MS.gene58804 | 0.841656 | 4.16E-58 | -1.69E-46 |
| MS.gene05702 | MS.gene58804 | 0.822248 | 2.62E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene58804 | 0.806218 | 9.15E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene58804 | 0.818487 | 1.91E-52 | -1.69E-46 |
| MS.gene057927 | MS.gene58804 | 0.802307 | 5.97E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene58804 | 0.851258 | 9.98E-61 | -1.69E-46 |
| MS.gene05811 | MS.gene58804 | 0.807194 | 5.69E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene58804 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene58804 | 0.825053 | 5.78E-54 | -1.69E-46 |
| MS.gene05886 | MS.gene58804 | 0.806462 | 8.13E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene58804 | 0.82744 | 1.56E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene58804 | 0.823106 | 1.66E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene58804 | 0.816147 | 6.42E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene58804 | 0.807906 | 4.02E-50 | -1.69E-46 |
| MS.gene05959 | MS.gene58804 | 0.82151 | 3.89E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene58804 | 0.858136 | 1.01E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene58804 | 0.831586 | 1.53E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene58804 | 0.843183 | 1.64E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene58804 | 0.842243 | 2.91E-58 | -1.69E-46 |
| MS.gene05984 | MS.gene58804 | 0.805711 | 1.17E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene58804 | 0.836879 | 7.22E-57 | -1.69E-46 |
| MS.gene06037 | MS.gene58804 | 0.833915 | 4.05E-56 | -1.69E-46 |
| MS.gene060495 | MS.gene58804 | 0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene060496 | MS.gene58804 | 0.816205 | 6.23E-52 | -1.69E-46 |
| MS.gene060569 | MS.gene58804 | 0.819649 | 1.04E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene58804 | 0.842388 | 2.67E-58 | -1.69E-46 |
| MS.gene061051 | MS.gene58804 | -0.818446 | 1.95E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene58804 | 0.815568 | 8.65E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTATTTGCTGCAATTT+TGG | 0.129989 | 5.3:-60350580 | MS.gene58804:CDS |
| TGTTTAAGAAAATGTCTAAA+AGG | 0.262129 | 5.3:-60353326 | MS.gene58804:CDS |
| AATGTCTAAAAGGGCTAAAA+AGG | 0.323229 | 5.3:-60353316 | MS.gene58804:CDS |
| GTAGTAGAGTTTGGAAGAAA+AGG | 0.351001 | 5.3:+60353648 | None:intergenic |
| ACGATGGTTGTAGTAGAGTT+TGG | 0.361096 | 5.3:+60353639 | None:intergenic |
| TTGCAGGTCATCTGCAACAT+TGG | 0.387086 | 5.3:-60350606 | MS.gene58804:intron |
| TAGTAGAGTTTGGAAGAAAA+GGG | 0.416897 | 5.3:+60353649 | None:intergenic |
| TTCTGAGAAGTGGTGAAGAT+TGG | 0.421457 | 5.3:+60353699 | None:intergenic |
| AATCAAGGGAACAATTCCTT+TGG | 0.435782 | 5.3:-60350501 | MS.gene58804:CDS |
| ACACCTTCATCAATCTCATA+TGG | 0.466013 | 5.3:+60353438 | None:intergenic |
| TTGATTGAAACTATTCCCAT+TGG | 0.473388 | 5.3:+60350518 | None:intergenic |
| TTTGGCCCTGCGTGTGATAT+GGG | 0.475980 | 5.3:-60350562 | MS.gene58804:CDS |
| GTTTCTCACTTCCAGTCCAA+TGG | 0.484407 | 5.3:-60350534 | MS.gene58804:CDS |
| TTTCTCACTTCCAGTCCAAT+GGG | 0.491752 | 5.3:-60350533 | MS.gene58804:CDS |
| AATGGGAATAGTTTCAATCA+AGG | 0.493079 | 5.3:-60350516 | MS.gene58804:CDS |
| GTTTAAGAAAATGTCTAAAA+GGG | 0.503270 | 5.3:-60353325 | MS.gene58804:CDS |
| TGAAACTATTCCCATTGGAC+TGG | 0.507228 | 5.3:+60350523 | None:intergenic |
| AAGGAGAAACTTACGAGTTG+AGG | 0.534806 | 5.3:+60353261 | None:intergenic |
| AGAGTTTGGAAGAAAAGGGT+TGG | 0.542234 | 5.3:+60353653 | None:intergenic |
| AAGTGGTGAAGATTGGAGCA+TGG | 0.552992 | 5.3:+60353706 | None:intergenic |
| CAGGTCATCTGCAACATTGG+AGG | 0.554407 | 5.3:-60350603 | MS.gene58804:CDS |
| ATGGGAATAGTTTCAATCAA+GGG | 0.569470 | 5.3:-60350515 | MS.gene58804:CDS |
| AATCATCAATTGCAATAGCA+AGG | 0.575080 | 5.3:-60353605 | MS.gene58804:intron |
| TGTCTAGGCTATAGCACCAA+AGG | 0.578357 | 5.3:+60350485 | None:intergenic |
| TGTTGTCAAAGCACTTCTTG+AGG | 0.596810 | 5.3:-60351622 | MS.gene58804:intron |
| AGCTGCCCATATCACACGCA+GGG | 0.602607 | 5.3:+60350557 | None:intergenic |
| GAACCATATGAGATTGATGA+AGG | 0.606231 | 5.3:-60353441 | MS.gene58804:CDS |
| TAGCTGAATAACTCAAGTGG+TGG | 0.614691 | 5.3:-60353465 | MS.gene58804:CDS |
| TTGTAGCTGAATAACTCAAG+TGG | 0.616039 | 5.3:-60353468 | MS.gene58804:intron |
| AGTTGAGGAGATATCACTGT+AGG | 0.617126 | 5.3:+60353276 | None:intergenic |
| GTGAAGATTGGAGCATGGAG+AGG | 0.628672 | 5.3:+60353711 | None:intergenic |
| CAGCTGCCCATATCACACGC+AGG | 0.644863 | 5.3:+60350556 | None:intergenic |
| GGGATATGATGGGATTGAAG+AGG | 0.656878 | 5.3:-60353409 | MS.gene58804:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAAAAAAGAAAATAG+CGG | + | chr5.3:60352698-60352717 | None:intergenic | 10.0% |
| !!! | AAAAAATTGTTTTTAGAAAA+TGG | - | chr5.3:60350697-60350716 | MS.gene58804:intron | 10.0% |
| !!! | AAAAATTGTTTTTAGAAAAT+GGG | - | chr5.3:60350698-60350717 | MS.gene58804:intron | 10.0% |
| !!! | TTAGATTATTCTTATATTTT+TGG | - | chr5.3:60353461-60353480 | MS.gene58804:CDS | 10.0% |
| !!! | ATGATAGTAATTTAAAATGA+AGG | + | chr5.3:60351893-60351912 | None:intergenic | 15.0% |
| !!! | ATGTTTCAAATTTTAAGATT+GGG | - | chr5.3:60352260-60352279 | MS.gene58804:intron | 15.0% |
| !!! | ATTTTTTATTACAGGTAATA+TGG | + | chr5.3:60351681-60351700 | None:intergenic | 15.0% |
| !!! | TTAAAATTTGAAACATGAAA+AGG | + | chr5.3:60352256-60352275 | None:intergenic | 15.0% |
| !! | AATCTAAACATACATTAACA+TGG | + | chr5.3:60351268-60351287 | None:intergenic | 20.0% |
| !! | GCATTTACTATAGTAAATAT+AGG | - | chr5.3:60351334-60351353 | MS.gene58804:intron | 20.0% |
| !! | GTTTAAGAAAATGTCTAAAA+GGG | - | chr5.3:60350907-60350926 | MS.gene58804:intron | 20.0% |
| !! | TACTATAGTAAATATAGGTT+AGG | - | chr5.3:60351339-60351358 | MS.gene58804:intron | 20.0% |
| !! | TATTTCATTTAAATGCTCTT+GGG | - | chr5.3:60351619-60351638 | MS.gene58804:intron | 20.0% |
| !! | TGTTTAAGAAAATGTCTAAA+AGG | - | chr5.3:60350906-60350925 | MS.gene58804:intron | 20.0% |
| !! | TTAATGTATGTTTAGATTTG+TGG | - | chr5.3:60351270-60351289 | MS.gene58804:intron | 20.0% |
| !! | TTAATTCTCTTTCTAGATAA+TGG | - | chr5.3:60353311-60353330 | MS.gene58804:CDS | 20.0% |
| !! | TTATTTCATTTAAATGCTCT+TGG | - | chr5.3:60351618-60351637 | MS.gene58804:intron | 20.0% |
| !! | TTTAAAAGTGATAAGCAATT+GGG | + | chr5.3:60351203-60351222 | None:intergenic | 20.0% |
| !!! | ACTCTTACACTTTTTATTAT+TGG | + | chr5.3:60352038-60352057 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTGTTCAGTACA+AGG | + | chr5.3:60352092-60352111 | None:intergenic | 20.0% |
| !!! | CATGTTTCAAATTTTAAGAT+TGG | - | chr5.3:60352259-60352278 | MS.gene58804:intron | 20.0% |
| !!! | TGTTTCAAATTTTAAGATTG+GGG | - | chr5.3:60352261-60352280 | MS.gene58804:intron | 20.0% |
| !!! | TTTTCATTTTGCTTCTTATT+TGG | - | chr5.3:60352529-60352548 | MS.gene58804:intron | 20.0% |
| ! | ATATAAGCTAACCAAAAGTA+TGG | - | chr5.3:60353499-60353518 | MS.gene58804:intron | 25.0% |
| ! | CTAGTGTTTAGAAATCAAAA+TGG | + | chr5.3:60352423-60352442 | None:intergenic | 25.0% |
| ! | GAAAATGTTGACAAAGTAAA+CGG | + | chr5.3:60352797-60352816 | None:intergenic | 25.0% |
| ! | GAATTTCTTTGCTTTATAAC+TGG | - | chr5.3:60353551-60353570 | MS.gene58804:intron | 25.0% |
| ! | GTTTAAAAGTGATAAGCAAT+TGG | + | chr5.3:60351204-60351223 | None:intergenic | 25.0% |
| ! | TAAGAAGCAAAATGAAAAAG+CGG | + | chr5.3:60352527-60352546 | None:intergenic | 25.0% |
| ! | TCTAGAAAGAGAATTAAGAA+AGG | + | chr5.3:60353308-60353327 | None:intergenic | 25.0% |
| ! | TGATTATTCATGATCACTAA+TGG | + | chr5.3:60351365-60351384 | None:intergenic | 25.0% |
| ! | TTTCCTACTTATTCAACTTA+AGG | - | chr5.3:60351772-60351791 | MS.gene58804:intron | 25.0% |
| !! | ATGACATTTTTGTATAAACC+GGG | - | chr5.3:60351461-60351480 | MS.gene58804:intron | 25.0% |
| !! | CATGACATTTTTGTATAAAC+CGG | - | chr5.3:60351460-60351479 | MS.gene58804:intron | 25.0% |
| !! | CATTTAAATTGACTTCTTAG+AGG | - | chr5.3:60352007-60352026 | MS.gene58804:intron | 25.0% |
| !! | GTTTGATTCTGCTTAATTTT+TGG | + | chr5.3:60352374-60352393 | None:intergenic | 25.0% |
| !!! | AAACACTACACTCTTTTTTT+TGG | + | chr5.3:60351826-60351845 | None:intergenic | 25.0% |
| !!! | AACACTACACTCTTTTTTTT+GGG | + | chr5.3:60351825-60351844 | None:intergenic | 25.0% |
| !!! | AACGCTACATTTTTTATTAC+AGG | + | chr5.3:60351689-60351708 | None:intergenic | 25.0% |
| !!! | AATTATCACATTCTGAAGTT+TGG | - | chr5.3:60351864-60351883 | MS.gene58804:intron | 25.0% |
| !!! | ATTTTGCTTCTTATTTGGAT+CGG | - | chr5.3:60352534-60352553 | MS.gene58804:intron | 25.0% |
| !!! | CATTTTGATTTCTAAACACT+AGG | - | chr5.3:60352421-60352440 | MS.gene58804:intron | 25.0% |
| !!! | GGTGCTTTTTTTAAAAGTTT+AGG | - | chr5.3:60352470-60352489 | MS.gene58804:intron | 25.0% |
| AAACAATTATTGTTCCTTGG+TGG | - | chr5.3:60351158-60351177 | MS.gene58804:intron | 30.0% | |
| AAAGCAAAGAAATTCTGTGA+AGG | + | chr5.3:60353546-60353565 | None:intergenic | 30.0% | |
| AACCATCACAAAATTCACTA+AGG | + | chr5.3:60352204-60352223 | None:intergenic | 30.0% | |
| AAGTAGTAGCTAACAACAAT+CGG | - | chr5.3:60353586-60353605 | MS.gene58804:intron | 30.0% | |
| AATCATCAATTGCAATAGCA+AGG | - | chr5.3:60350627-60350646 | MS.gene58804:intron | 30.0% | |
| AATGGGAATAGTTTCAATCA+AGG | - | chr5.3:60353716-60353735 | MS.gene58804:CDS | 30.0% | |
| AATGTCTAAAAGGGCTAAAA+AGG | - | chr5.3:60350916-60350935 | MS.gene58804:intron | 30.0% | |
| AGTGAACTTGAACAGTTATT+GGG | - | chr5.3:60353431-60353450 | MS.gene58804:CDS | 30.0% | |
| AGTTGAATAAGTAGGAAATC+CGG | + | chr5.3:60351770-60351789 | None:intergenic | 30.0% | |
| ATGGGAATAGTTTCAATCAA+GGG | - | chr5.3:60353717-60353736 | MS.gene58804:CDS | 30.0% | |
| CAACTAATTTAAACGCTCTT+GGG | - | chr5.3:60351971-60351990 | MS.gene58804:intron | 30.0% | |
| CCAAGGAACAATAATTGTTT+AGG | + | chr5.3:60351158-60351177 | None:intergenic | 30.0% | |
| CCTAAACAATTATTGTTCCT+TGG | - | chr5.3:60351155-60351174 | MS.gene58804:intron | 30.0% | |
| GATAACATTTGTGTAGTTTG+AGG | - | chr5.3:60353374-60353393 | MS.gene58804:CDS | 30.0% | |
| GTACATCACTAGTAATTAGT+CGG | - | chr5.3:60352114-60352133 | MS.gene58804:intron | 30.0% | |
| TAGAATATAAATGTGCTGCA+TGG | - | chr5.3:60352449-60352468 | MS.gene58804:intron | 30.0% | |
| TAGTAGAGTTTGGAAGAAAA+GGG | + | chr5.3:60350586-60350605 | None:intergenic | 30.0% | |
| TCAACTAATTTAAACGCTCT+TGG | - | chr5.3:60351970-60351989 | MS.gene58804:intron | 30.0% | |
| TCATTTCCTAAAACTTGTGT+TGG | - | chr5.3:60352822-60352841 | MS.gene58804:intron | 30.0% | |
| TCCTGACCATTAAATCAAAT+CGG | - | chr5.3:60353020-60353039 | MS.gene58804:intron | 30.0% | |
| TTGATTGAAACTATTCCCAT+TGG | + | chr5.3:60353717-60353736 | None:intergenic | 30.0% | |
| ! | AAGAGTCTCTTTTCTCATAT+TGG | - | chr5.3:60353190-60353209 | MS.gene58804:intron | 30.0% |
| ! | ATTTTTGTGTGTTAACCCTT+CGG | - | chr5.3:60351028-60351047 | MS.gene58804:intron | 30.0% |
| ! | CAAACATGCAATTTTTCATG+AGG | - | chr5.3:60352389-60352408 | MS.gene58804:intron | 30.0% |
| ! | CTTTTAAACGAGTTATCCTT+AGG | - | chr5.3:60351215-60351234 | MS.gene58804:intron | 30.0% |
| ! | GTAAAACCAACACAAGTTTT+AGG | + | chr5.3:60352831-60352850 | None:intergenic | 30.0% |
| ! | TTCCTAGGTGAAACAATTTT+TGG | + | chr5.3:60351120-60351139 | None:intergenic | 30.0% |
| !! | TCACCTTAAGTTGAATAAGT+AGG | + | chr5.3:60351778-60351797 | None:intergenic | 30.0% |
| !! | TGTGATAGTTTTACAGAGAA+TGG | + | chr5.3:60351419-60351438 | None:intergenic | 30.0% |
| !! | TTTTGCTTCTTATTTGGATC+GGG | - | chr5.3:60352535-60352554 | MS.gene58804:intron | 30.0% |
| !!! | AGATTGATGAAGGTGTTTTT+GGG | - | chr5.3:60350801-60350820 | MS.gene58804:intron | 30.0% |
| !!! | GAACTCAGTTTTTTATCCTA+AGG | + | chr5.3:60351234-60351253 | None:intergenic | 30.0% |
| !!! | TGATTTTGAGATTTGAACGA+TGG | + | chr5.3:60350612-60350631 | None:intergenic | 30.0% |
| !!! | TTTAAGATTGGGGTTTTGTT+TGG | - | chr5.3:60352271-60352290 | MS.gene58804:intron | 30.0% |
| AATCAAGGGAACAATTCCTT+TGG | - | chr5.3:60353731-60353750 | MS.gene58804:CDS | 35.0% | |
| AATGCATGTTTGACAGAATC+AGG | + | chr5.3:60351319-60351338 | None:intergenic | 35.0% | |
| AATGTTGACAAAGTAAACGG+AGG | + | chr5.3:60352794-60352813 | None:intergenic | 35.0% | |
| AATTTAAACGCTCTTGGGTT+GGG | - | chr5.3:60351976-60351995 | MS.gene58804:intron | 35.0% | |
| ACACCTTCATCAATCTCATA+TGG | + | chr5.3:60350797-60350816 | None:intergenic | 35.0% | |
| AGTAGTAGCTAACAACAATC+GGG | - | chr5.3:60353587-60353606 | MS.gene58804:intron | 35.0% | |
| CAACAATAAAACTCATGAGC+AGG | + | chr5.3:60351543-60351562 | None:intergenic | 35.0% | |
| CTTAGTGAAGACTGAAGAAA+AGG | + | chr5.3:60350993-60351012 | None:intergenic | 35.0% | |
| GAACCATATGAGATTGATGA+AGG | - | chr5.3:60350791-60350810 | MS.gene58804:intron | 35.0% | |
| GACCATTAAATCAAATCGGA+CGG | - | chr5.3:60353024-60353043 | MS.gene58804:intron | 35.0% | |
| GAGTGAACTTGAACAGTTAT+TGG | - | chr5.3:60353430-60353449 | MS.gene58804:CDS | 35.0% | |
| GTAGTAGAGTTTGGAAGAAA+AGG | + | chr5.3:60350587-60350606 | None:intergenic | 35.0% | |
| GTCGCTTCTAACTTAATCAA+AGG | + | chr5.3:60351593-60351612 | None:intergenic | 35.0% | |
| GTTGAATAAGTAGGAAATCC+GGG | + | chr5.3:60351769-60351788 | None:intergenic | 35.0% | |
| TAATTTAAACGCTCTTGGGT+TGG | - | chr5.3:60351975-60351994 | MS.gene58804:intron | 35.0% | |
| TGAGTTCGAACTCTCAAAAA+TGG | + | chr5.3:60351919-60351938 | None:intergenic | 35.0% | |
| TTATTTGGATCGGGAAATTC+AGG | - | chr5.3:60352544-60352563 | MS.gene58804:intron | 35.0% | |
| TTCACTAAGGAGTTACAAAG+AGG | + | chr5.3:60352191-60352210 | None:intergenic | 35.0% | |
| TTCTTCAGTCTTCACTAAGT+TGG | - | chr5.3:60350994-60351013 | MS.gene58804:intron | 35.0% | |
| TTGAATAAGTAGGAAATCCG+GGG | + | chr5.3:60351768-60351787 | None:intergenic | 35.0% | |
| TTGTAGCTGAATAACTCAAG+TGG | - | chr5.3:60350764-60350783 | MS.gene58804:intron | 35.0% | |
| ! | AAAGAAGATAAAGTGCTAGC+TGG | - | chr5.3:60352895-60352914 | MS.gene58804:intron | 35.0% |
| ! | ATGCAATTTTTCATGAGGCA+TGG | - | chr5.3:60352394-60352413 | MS.gene58804:intron | 35.0% |
| ! | ATTGTTTCTTCACTACTGTG+TGG | - | chr5.3:60352634-60352653 | MS.gene58804:intron | 35.0% |
| ! | CAATTCCAGAACCATACTTT+TGG | + | chr5.3:60353513-60353532 | None:intergenic | 35.0% |
| ! | CTCCTTAGTGAATTTTGTGA+TGG | - | chr5.3:60352199-60352218 | MS.gene58804:intron | 35.0% |
| ! | GAATATTGACTGTGAATTGC+AGG | - | chr5.3:60353610-60353629 | MS.gene58804:CDS | 35.0% |
| ! | TCCGATTTGATTTAATGGTC+AGG | + | chr5.3:60353024-60353043 | None:intergenic | 35.0% |
| ! | TTTTTGTATAAACCGGGCTT+CGG | - | chr5.3:60351467-60351486 | MS.gene58804:intron | 35.0% |
| !! | CACTGTATTTGCTGCAATTT+TGG | - | chr5.3:60353652-60353671 | MS.gene58804:CDS | 35.0% |
| !! | GAACATTGTTTTCTGAGAAG+TGG | + | chr5.3:60350546-60350565 | None:intergenic | 35.0% |
| !! | GTTTGGATTAGCTAATCTTG+TGG | - | chr5.3:60352288-60352307 | MS.gene58804:intron | 35.0% |
| !! | TTTTGGGTCAATTAGCATAG+TGG | + | chr5.3:60351809-60351828 | None:intergenic | 35.0% |
| !! | TTTTTGAGAGTTCGAACTCA+AGG | - | chr5.3:60351919-60351938 | MS.gene58804:intron | 35.0% |
| !!! | AGGTTTCTTTTGCTGTTGAT+GGG | - | chr5.3:60352564-60352583 | MS.gene58804:intron | 35.0% |
| !!! | ATTGATGAAGGTGTTTTTGG+GGG | - | chr5.3:60350803-60350822 | MS.gene58804:intron | 35.0% |
| !!! | GAGATTGATGAAGGTGTTTT+TGG | - | chr5.3:60350800-60350819 | MS.gene58804:intron | 35.0% |
| !!! | GATTGATGAAGGTGTTTTTG+GGG | - | chr5.3:60350802-60350821 | MS.gene58804:intron | 35.0% |
| !!! | TAGGTGAAACAATTTTTGGC+CGG | + | chr5.3:60351116-60351135 | None:intergenic | 35.0% |
| AAGAGGAGAAGGAAACTTGA+AGG | + | chr5.3:60352174-60352193 | None:intergenic | 40.0% | |
| AAGGAGAAACTTACGAGTTG+AGG | + | chr5.3:60350974-60350993 | None:intergenic | 40.0% | |
| AAGGAGTTACAAAGAGGAGA+AGG | + | chr5.3:60352185-60352204 | None:intergenic | 40.0% | |
| ACCGTTCGATGTGATATCAA+TGG | + | chr5.3:60352976-60352995 | None:intergenic | 40.0% | |
| ACGATGGTTGTAGTAGAGTT+TGG | + | chr5.3:60350596-60350615 | None:intergenic | 40.0% | |
| ACTTGAACAGTTATTGGGAC+TGG | - | chr5.3:60353436-60353455 | MS.gene58804:CDS | 40.0% | |
| AGAGTTTGGAAGAAAAGGGT+TGG | + | chr5.3:60350582-60350601 | None:intergenic | 40.0% | |
| AGCTAGGGATGTTGTATTTC+AGG | - | chr5.3:60353101-60353120 | MS.gene58804:intron | 40.0% | |
| AGTTGAGGAGATATCACTGT+AGG | + | chr5.3:60350959-60350978 | None:intergenic | 40.0% | |
| GCAAAATGAAAAAGCGGTCA+AGG | + | chr5.3:60352521-60352540 | None:intergenic | 40.0% | |
| GCCATTGATATCACATCGAA+CGG | - | chr5.3:60352972-60352991 | MS.gene58804:intron | 40.0% | |
| GGCCAAAAATTGTTTCACCT+AGG | - | chr5.3:60351115-60351134 | MS.gene58804:intron | 40.0% | |
| GGGTTAACACACAAAAATGC+CGG | + | chr5.3:60351026-60351045 | None:intergenic | 40.0% | |
| GTAGTAGCTAACAACAATCG+GGG | - | chr5.3:60353588-60353607 | MS.gene58804:intron | 40.0% | |
| TAGCTGAATAACTCAAGTGG+TGG | - | chr5.3:60350767-60350786 | MS.gene58804:intron | 40.0% | |
| TGAAACTATTCCCATTGGAC+TGG | + | chr5.3:60353712-60353731 | None:intergenic | 40.0% | |
| TTTATTACAGCAGGGAATCC+TGG | + | chr5.3:60352922-60352941 | None:intergenic | 40.0% | |
| TTTCACCTAGGAATCGAACT+CGG | - | chr5.3:60351127-60351146 | MS.gene58804:intron | 40.0% | |
| TTTCTCACTTCCAGTCCAAT+GGG | - | chr5.3:60353699-60353718 | MS.gene58804:CDS | 40.0% | |
| ! | AGGACGAGTCATTGTGATTT+TGG | + | chr5.3:60351299-60351318 | None:intergenic | 40.0% |
| ! | GACCCTTGTAATCTAGAGTT+CGG | - | chr5.3:60351072-60351091 | MS.gene58804:intron | 40.0% |
| ! | GCTAACCAAAAGTATGGTTC+TGG | - | chr5.3:60353505-60353524 | MS.gene58804:intron | 40.0% |
| ! | TGTTAACCCTTCGGTTTTCA+GGG | - | chr5.3:60351037-60351056 | MS.gene58804:intron | 40.0% |
| ! | TGTTGTCAAAGCACTTCTTG+AGG | - | chr5.3:60352610-60352629 | MS.gene58804:intron | 40.0% |
| ! | TTAAATGCTCTTGGGTTGCA+TGG | - | chr5.3:60351627-60351646 | MS.gene58804:CDS | 40.0% |
| ! | TTCACTAAGTTGGCGAAATC+CGG | - | chr5.3:60351004-60351023 | MS.gene58804:intron | 40.0% |
| ! | TTCTGAGAAGTGGTGAAGAT+TGG | + | chr5.3:60350536-60350555 | None:intergenic | 40.0% |
| ! | TTTTGTATAAACCGGGCTTC+GGG | - | chr5.3:60351468-60351487 | MS.gene58804:intron | 40.0% |
| !!! | CAGGTTTCTTTTGCTGTTGA+TGG | - | chr5.3:60352563-60352582 | MS.gene58804:intron | 40.0% |
| !!! | CTCAAGGTTTTTAGTCGAAC+TGG | - | chr5.3:60351935-60351954 | MS.gene58804:intron | 40.0% |
| !!! | GTGTTTTTGGGGGATATGAT+GGG | - | chr5.3:60350813-60350832 | MS.gene58804:intron | 40.0% |
| AAAGGGCTAAAAAGGCTTCG+AGG | - | chr5.3:60350924-60350943 | MS.gene58804:intron | 45.0% | |
| AAGTGGTGAAGATTGGAGCA+TGG | + | chr5.3:60350529-60350548 | None:intergenic | 45.0% | |
| ATATCCCTACCAACTGCTCA+CGG | + | chr5.3:60351718-60351737 | None:intergenic | 45.0% | |
| GATAAGCAATTGGGCTCAAG+TGG | + | chr5.3:60351194-60351213 | None:intergenic | 45.0% | |
| GGCCGAACTCTAGATTACAA+GGG | + | chr5.3:60351077-60351096 | None:intergenic | 45.0% | |
| GTTTCTCACTTCCAGTCCAA+TGG | - | chr5.3:60353698-60353717 | MS.gene58804:CDS | 45.0% | |
| TAACAGCAGGAAATCCAGTC+CGG | - | chr5.3:60353073-60353092 | MS.gene58804:intron | 45.0% | |
| TGGCCGAACTCTAGATTACA+AGG | + | chr5.3:60351078-60351097 | None:intergenic | 45.0% | |
| TTCACCTAGGAATCGAACTC+GGG | - | chr5.3:60351128-60351147 | MS.gene58804:intron | 45.0% | |
| TTGCAGGTCATCTGCAACAT+TGG | - | chr5.3:60353626-60353645 | MS.gene58804:CDS | 45.0% | |
| ! | ACTGCGTGCTTTATTACAGC+AGG | + | chr5.3:60352931-60352950 | None:intergenic | 45.0% |
| ! | CTGCGTGCTTTATTACAGCA+GGG | + | chr5.3:60352930-60352949 | None:intergenic | 45.0% |
| ! | GGCCGTCCGATTTGATTTAA+TGG | + | chr5.3:60353029-60353048 | None:intergenic | 45.0% |
| ! | GGGATATGATGGGATTGAAG+AGG | - | chr5.3:60350823-60350842 | MS.gene58804:intron | 45.0% |
| ! | GTGTTAACCCTTCGGTTTTC+AGG | - | chr5.3:60351036-60351055 | MS.gene58804:intron | 45.0% |
| ! | GTTAACCCTTCGGTTTTCAG+GGG | - | chr5.3:60351038-60351057 | MS.gene58804:intron | 45.0% |
| !! | AGCAGTTGGTAGGGATATTG+CGG | - | chr5.3:60351720-60351739 | MS.gene58804:intron | 45.0% |
| !!! | GGTGTTTTTGGGGGATATGA+TGG | - | chr5.3:60350812-60350831 | MS.gene58804:intron | 45.0% |
| AGAACCCGAGTTCGATTCCT+AGG | + | chr5.3:60351135-60351154 | None:intergenic | 50.0% | |
| AGCGGTCAAGGACACATTGA+AGG | + | chr5.3:60352509-60352528 | None:intergenic | 50.0% | |
| ATATTGCGGTATGCAGGAGC+TGG | - | chr5.3:60351734-60351753 | MS.gene58804:intron | 50.0% | |
| ATCGGAATGCAACCCTGAGT+CGG | - | chr5.3:60351492-60351511 | MS.gene58804:intron | 50.0% | |
| CAACATCCCTAGCTAAGCAC+CGG | + | chr5.3:60353095-60353114 | None:intergenic | 50.0% | |
| CACCGTAGGCTGAGTTATGT+GGG | - | chr5.3:60353346-60353365 | MS.gene58804:CDS | 50.0% | |
| CAGGACGCTGTAACAGATCA+GGG | + | chr5.3:60353050-60353069 | None:intergenic | 50.0% | |
| CAGGTCATCTGCAACATTGG+AGG | - | chr5.3:60353629-60353648 | MS.gene58804:CDS | 50.0% | |
| CCTATCCCCTGAAAACCGAA+GGG | + | chr5.3:60351046-60351065 | None:intergenic | 50.0% | |
| CTCCCACATAACTCAGCCTA+CGG | + | chr5.3:60353351-60353370 | None:intergenic | 50.0% | |
| GGATTTCCTGCTGTTACAGC+AGG | + | chr5.3:60353069-60353088 | None:intergenic | 50.0% | |
| GTAGGCTGAGTTATGTGGGA+GGG | - | chr5.3:60353350-60353369 | MS.gene58804:CDS | 50.0% | |
| GTAGGGATATTGCGGTATGC+AGG | - | chr5.3:60351728-60351747 | MS.gene58804:intron | 50.0% | |
| GTGAAGATTGGAGCATGGAG+AGG | + | chr5.3:60350524-60350543 | None:intergenic | 50.0% | |
| GTGGTTAATGAGCTCCACCA+AGG | + | chr5.3:60351175-60351194 | None:intergenic | 50.0% | |
| TATCCCTACCAACTGCTCAC+GGG | + | chr5.3:60351717-60351736 | None:intergenic | 50.0% | |
| TATTGCGGTATGCAGGAGCT+GGG | - | chr5.3:60351735-60351754 | MS.gene58804:intron | 50.0% | |
| TTTGGCCCTGCGTGTGATAT+GGG | - | chr5.3:60353670-60353689 | MS.gene58804:CDS | 50.0% | |
| ! | CAGGAGTTTTGCCACTCATG+TGG | + | chr5.3:60351524-60351543 | None:intergenic | 50.0% |
| ! | GATAAAGTGCTAGCTGGACC+AGG | - | chr5.3:60352901-60352920 | MS.gene58804:intron | 50.0% |
| ! | TTTTGGCCCTGCGTGTGATA+TGG | - | chr5.3:60353669-60353688 | MS.gene58804:CDS | 50.0% |
| !! | CCTTCGGTTTTCAGGGGATA+GGG | - | chr5.3:60351044-60351063 | MS.gene58804:intron | 50.0% |
| AATGCAACCCTGAGTCGGGT+GGG | - | chr5.3:60351497-60351516 | MS.gene58804:intron | 55.0% | |
| AGCTGCCCATATCACACGCA+GGG | + | chr5.3:60353678-60353697 | None:intergenic | 55.0% | |
| ATAAACCGGGCTTCGGGCAT+CGG | - | chr5.3:60351474-60351493 | MS.gene58804:intron | 55.0% | |
| ATCCAGTCCGGTGCTTAGCT+AGG | - | chr5.3:60353085-60353104 | MS.gene58804:intron | 55.0% | |
| ATCCCTACCAACTGCTCACG+GGG | + | chr5.3:60351716-60351735 | None:intergenic | 55.0% | |
| ATTGCGGTATGCAGGAGCTG+GGG | - | chr5.3:60351736-60351755 | MS.gene58804:intron | 55.0% | |
| CCCTATCCCCTGAAAACCGA+AGG | + | chr5.3:60351047-60351066 | None:intergenic | 55.0% | |
| CGTAGGCTGAGTTATGTGGG+AGG | - | chr5.3:60353349-60353368 | MS.gene58804:CDS | 55.0% | |
| GCACCGTAGGCTGAGTTATG+TGG | - | chr5.3:60353345-60353364 | MS.gene58804:CDS | 55.0% | |
| GCAGGACGCTGTAACAGATC+AGG | + | chr5.3:60353051-60353070 | None:intergenic | 55.0% | |
| GCCACGAGCTAAGTTAGGTC+CGG | - | chr5.3:60351094-60351113 | MS.gene58804:intron | 55.0% | |
| GTTCGGCCACGAGCTAAGTT+AGG | - | chr5.3:60351089-60351108 | MS.gene58804:intron | 55.0% | |
| GTTTAGTCCCCGTGAGCAGT+TGG | - | chr5.3:60351706-60351725 | MS.gene58804:intron | 55.0% | |
| TCCAGTCCGGTGCTTAGCTA+GGG | - | chr5.3:60353086-60353105 | MS.gene58804:intron | 55.0% | |
| TCGGAATGCAACCCTGAGTC+GGG | - | chr5.3:60351493-60351512 | MS.gene58804:intron | 55.0% | |
| !! | CCCTTCGGTTTTCAGGGGAT+AGG | - | chr5.3:60351043-60351062 | MS.gene58804:intron | 55.0% |
| AGTCCCCGTGAGCAGTTGGT+AGG | - | chr5.3:60351710-60351729 | MS.gene58804:intron | 60.0% | |
| ATGTGGTCCCACCCGACTCA+GGG | + | chr5.3:60351507-60351526 | None:intergenic | 60.0% | |
| CAGCGTCCTGCTGTAACAGC+AGG | - | chr5.3:60353060-60353079 | MS.gene58804:intron | 60.0% | |
| CAGCTGCCCATATCACACGC+AGG | + | chr5.3:60353679-60353698 | None:intergenic | 60.0% | |
| GAATGCAACCCTGAGTCGGG+TGG | - | chr5.3:60351496-60351515 | MS.gene58804:intron | 60.0% | |
| GCCGGACCTAACTTAGCTCG+TGG | + | chr5.3:60351098-60351117 | None:intergenic | 60.0% | |
| GGACTTGCGTGATGCACCGT+AGG | - | chr5.3:60353332-60353351 | MS.gene58804:CDS | 60.0% | |
| ! | GTCCCCGTGAGCAGTTGGTA+GGG | - | chr5.3:60351711-60351730 | MS.gene58804:intron | 60.0% |
| !! | TCCCTAGCTAAGCACCGGAC+TGG | + | chr5.3:60353090-60353109 | None:intergenic | 60.0% |
| AGGAGCTGGGGTTCGAACCC+CGG | - | chr5.3:60351748-60351767 | MS.gene58804:intron | 65.0% | |
| CATGTGGTCCCACCCGACTC+AGG | + | chr5.3:60351508-60351527 | None:intergenic | 65.0% | |
| GCATTCCGATGCCCGAAGCC+CGG | + | chr5.3:60351482-60351501 | None:intergenic | 65.0% | |
| GTCGGGTGGGACCACATGAG+TGG | - | chr5.3:60351510-60351529 | MS.gene58804:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 60350488 | 60353766 | 60350488 | ID=MS.gene58804 |
| chr5.3 | mRNA | 60350488 | 60353766 | 60350488 | ID=MS.gene58804.t1;Parent=MS.gene58804 |
| chr5.3 | exon | 60353606 | 60353766 | 60353606 | ID=MS.gene58804.t1.exon1;Parent=MS.gene58804.t1 |
| chr5.3 | CDS | 60353606 | 60353766 | 60353606 | ID=cds.MS.gene58804.t1;Parent=MS.gene58804.t1 |
| chr5.3 | exon | 60353275 | 60353484 | 60353275 | ID=MS.gene58804.t1.exon2;Parent=MS.gene58804.t1 |
| chr5.3 | CDS | 60353275 | 60353484 | 60353275 | ID=cds.MS.gene58804.t1;Parent=MS.gene58804.t1 |
| chr5.3 | exon | 60351623 | 60351688 | 60351623 | ID=MS.gene58804.t1.exon3;Parent=MS.gene58804.t1 |
| chr5.3 | CDS | 60351623 | 60351688 | 60351623 | ID=cds.MS.gene58804.t1;Parent=MS.gene58804.t1 |
| chr5.3 | exon | 60350488 | 60350622 | 60350488 | ID=MS.gene58804.t1.exon4;Parent=MS.gene58804.t1 |
| chr5.3 | CDS | 60350488 | 60350622 | 60350488 | ID=cds.MS.gene58804.t1;Parent=MS.gene58804.t1 |
| Gene Sequence |
| Protein sequence |
