Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59331.t1 | XP_003611934.1 | 98.8 | 322 | 4 | 0 | 1 | 322 | 1 | 322 | 3.40E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59331.t1 | Q94A43 | 64.3 | 297 | 80 | 12 | 29 | 319 | 36 | 312 | 4.6e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59331.t1 | G7KC60 | 98.8 | 322 | 4 | 0 | 1 | 322 | 1 | 322 | 2.4e-155 | 557.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59331.t1 | TF | BES1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene59331 | -0.804593 | 2.00E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene59331 | -0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene59331 | -0.823883 | 1.09E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene59331 | -0.818408 | 1.99E-52 | -1.69E-46 |
| MS.gene049910 | MS.gene59331 | -0.816349 | 5.79E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene59331 | -0.836365 | 9.77E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene59331 | -0.854939 | 8.81E-62 | -1.69E-46 |
| MS.gene050228 | MS.gene59331 | -0.844663 | 6.58E-59 | -1.69E-46 |
| MS.gene050426 | MS.gene59331 | 0.817093 | 3.94E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene59331 | -0.802544 | 5.34E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene59331 | 0.873013 | 2.04E-67 | -1.69E-46 |
| MS.gene050642 | MS.gene59331 | -0.863623 | 2.18E-64 | -1.69E-46 |
| MS.gene051860 | MS.gene59331 | -0.863006 | 3.39E-64 | -1.69E-46 |
| MS.gene051983 | MS.gene59331 | -0.8532 | 2.80E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene59331 | 0.845499 | 3.91E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene59331 | -0.857203 | 1.92E-62 | -1.69E-46 |
| MS.gene052253 | MS.gene59331 | -0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene052420 | MS.gene59331 | -0.807359 | 5.25E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene59331 | -0.847883 | 8.72E-60 | -1.69E-46 |
| MS.gene054183 | MS.gene59331 | -0.834876 | 2.33E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene59331 | -0.807123 | 5.89E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene59331 | -0.803012 | 4.27E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene59331 | -0.807817 | 4.20E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene59331 | -0.830903 | 2.26E-55 | -1.69E-46 |
| MS.gene056899 | MS.gene59331 | 0.808151 | 3.57E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene59331 | -0.843551 | 1.31E-58 | -1.69E-46 |
| MS.gene057121 | MS.gene59331 | -0.803906 | 2.79E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene59331 | -0.824536 | 7.65E-54 | -1.69E-46 |
| MS.gene058710 | MS.gene59331 | -0.817012 | 4.11E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene59331 | -0.818593 | 1.81E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene59331 | -0.804516 | 2.08E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene59331 | -0.807171 | 5.76E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene59331 | -0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene59331 | -0.85411 | 1.53E-61 | -1.69E-46 |
| MS.gene061040 | MS.gene59331 | 0.830297 | 3.18E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene59331 | -0.811225 | 7.79E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene59331 | 0.811835 | 5.74E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59331.t1 | MTR_5g019550 | 98.758 | 322 | 4 | 0 | 1 | 322 | 1 | 322 | 0.0 | 649 |
| MS.gene59331.t1 | MTR_5g019550 | 98.319 | 238 | 4 | 0 | 85 | 322 | 1 | 238 | 1.16e-169 | 471 |
| MS.gene59331.t1 | MTR_3g111680 | 54.103 | 329 | 119 | 8 | 2 | 322 | 8 | 312 | 6.39e-80 | 246 |
| MS.gene59331.t1 | MTR_1g021990 | 37.975 | 316 | 111 | 8 | 9 | 322 | 14 | 246 | 3.98e-49 | 164 |
| MS.gene59331.t1 | MTR_2g075410 | 43.466 | 352 | 133 | 12 | 6 | 323 | 3 | 322 | 3.51e-37 | 135 |
| MS.gene59331.t1 | MTR_2g075400 | 42.363 | 347 | 137 | 12 | 6 | 323 | 3 | 315 | 2.55e-33 | 129 |
| MS.gene59331.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.80e-14 | 74.3 |
| MS.gene59331.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.99e-14 | 74.3 |
| MS.gene59331.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 2.07e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59331.t1 | AT1G75080 | 54.303 | 337 | 105 | 12 | 9 | 322 | 23 | 333 | 8.92e-93 | 279 |
| MS.gene59331.t1 | AT1G75080 | 54.303 | 337 | 105 | 12 | 9 | 322 | 23 | 333 | 8.92e-93 | 279 |
| MS.gene59331.t1 | AT1G19350 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.19e-91 | 275 |
| MS.gene59331.t1 | AT1G19350 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.19e-91 | 275 |
| MS.gene59331.t1 | AT1G19350 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.19e-91 | 275 |
| MS.gene59331.t1 | AT1G19350 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.19e-91 | 275 |
| MS.gene59331.t1 | AT1G19350 | 54.303 | 337 | 105 | 12 | 9 | 322 | 44 | 354 | 5.57e-91 | 275 |
| MS.gene59331.t1 | AT3G50750 | 51.863 | 322 | 95 | 8 | 2 | 319 | 4 | 269 | 1.68e-76 | 236 |
| MS.gene59331.t1 | AT4G36780 | 71.859 | 199 | 49 | 5 | 9 | 203 | 16 | 211 | 1.83e-61 | 197 |
| MS.gene59331.t1 | AT1G78700 | 41.193 | 352 | 135 | 13 | 6 | 319 | 3 | 320 | 1.46e-44 | 155 |
| MS.gene59331.t1 | AT4G18890 | 40.432 | 324 | 144 | 11 | 6 | 323 | 3 | 283 | 4.88e-33 | 124 |
| MS.gene59331.t1 | AT2G45880 | 38.686 | 137 | 75 | 3 | 3 | 136 | 63 | 193 | 7.69e-15 | 75.9 |
| MS.gene59331.t1 | AT5G45300 | 52.113 | 71 | 31 | 1 | 20 | 90 | 97 | 164 | 3.52e-14 | 73.6 |
| MS.gene59331.t1 | AT5G45300 | 52.113 | 71 | 31 | 1 | 20 | 90 | 111 | 178 | 3.75e-14 | 73.6 |
| MS.gene59331.t1 | AT5G45300 | 55.932 | 59 | 26 | 0 | 20 | 78 | 97 | 155 | 1.33e-13 | 72.0 |
Find 105 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCTAAGATCTATTC+AGG | 0.302180 | 5.4:+11823890 | MS.gene59331:CDS |
| TGGGGAGTGATCTGCATTGC+TGG | 0.307829 | 5.4:-11825299 | None:intergenic |
| GAAGAAAGAGGTGGCGTAAC+AGG | 0.321873 | 5.4:-11825023 | None:intergenic |
| GCATCTGACTCATCGCATTC+TGG | 0.328895 | 5.4:-11825185 | None:intergenic |
| GGAGTTCCTCCCATTTCATT+TGG | 0.346161 | 5.4:-11824780 | None:intergenic |
| GTGGCGAAACGTGGAGTTAA+AGG | 0.352130 | 5.4:-11825096 | None:intergenic |
| GAGACCATTACCAAATGAAA+TGG | 0.372705 | 5.4:+11824770 | MS.gene59331:CDS |
| TTGGAGCTTACTCTAGGGTT+TGG | 0.376143 | 5.4:+11825476 | MS.gene59331:CDS |
| TCATTATTATCACAGTGTTT+AGG | 0.379828 | 5.4:-11823941 | None:intergenic |
| GAACAAGCACTCATATTTGT+TGG | 0.400165 | 5.4:-11824801 | None:intergenic |
| CCTCCCATTTCATTTGGTAA+TGG | 0.409966 | 5.4:-11824774 | None:intergenic |
| AACGAAGAAGACTGTGGACT+TGG | 0.429225 | 5.4:-11824858 | None:intergenic |
| ATGGTGCAGAGGTAGCAAAA+AGG | 0.431410 | 5.4:-11825121 | None:intergenic |
| CTCTTTGTTCTGAAGCTGGT+TGG | 0.433313 | 5.4:+11823975 | MS.gene59331:CDS |
| CTAAGGGGTGGAAGATTTGT+TGG | 0.437346 | 5.4:-11824984 | None:intergenic |
| TTACGTCGCGAAGGGCTTGA+TGG | 0.441756 | 5.4:-11825140 | None:intergenic |
| ATGACCGGCGGTGGATCCTC+CGG | 0.444774 | 5.4:+11823806 | MS.gene59331:CDS |
| AAAGCTCTTTGTTCTGAAGC+TGG | 0.450319 | 5.4:+11823971 | MS.gene59331:CDS |
| GTTTCATAAGATTAAAAGTA+GGG | 0.465742 | 5.4:-11825277 | None:intergenic |
| GAATGGTAGGAGAAAGGAAG+AGG | 0.471644 | 5.4:-11824940 | None:intergenic |
| CTCGTAGGGTATGATGGTAT+TGG | 0.473170 | 5.4:-11824888 | None:intergenic |
| GGAAGGAGGAGCTGCACCAT+GGG | 0.477201 | 5.4:-11825255 | None:intergenic |
| CTCTTCGCCGGAACGATGAC+CGG | 0.477263 | 5.4:+11823791 | None:intergenic |
| CAACAAATCTTCCACCCCTT+AGG | 0.481611 | 5.4:+11824985 | MS.gene59331:CDS |
| TAAGGGGTGGAAGATTTGTT+GGG | 0.482571 | 5.4:-11824983 | None:intergenic |
| GAAGAGTTGGAGCTTACTCT+AGG | 0.484349 | 5.4:+11825470 | MS.gene59331:CDS |
| AATGAGGAAGATTGTGGACT+TGG | 0.485039 | 5.4:-11824834 | None:intergenic |
| GTATCATATCCATCGAACTC+TGG | 0.485353 | 5.4:-11825319 | None:intergenic |
| TATCATATCCATCGAACTCT+GGG | 0.486116 | 5.4:-11825318 | None:intergenic |
| CGCATTCTGGAATGGTGGAA+GGG | 0.492428 | 5.4:-11825172 | None:intergenic |
| CGATGAGTCAGATGCTTCTA+CGG | 0.496132 | 5.4:+11825193 | MS.gene59331:CDS |
| GCCGGAACGATGACCGGCGG+TGG | 0.500980 | 5.4:+11823797 | None:intergenic |
| GGGTATGATGGTATTGGACT+CGG | 0.506930 | 5.4:-11824882 | None:intergenic |
| TCAGCTACTGAGAGAGGTAG+AGG | 0.507163 | 5.4:+11825374 | MS.gene59331:CDS |
| GAGCACTGTTGGAAATCCTA+AGG | 0.507516 | 5.4:-11825001 | None:intergenic |
| GAACTTCTCGGAGAAGAAAG+AGG | 0.507602 | 5.4:-11825035 | None:intergenic |
| GTTAAAGGAAGCATTACAAA+GGG | 0.511164 | 5.4:-11825081 | None:intergenic |
| GAAGTTATGTTGCGGATGAA+TGG | 0.514169 | 5.4:-11824957 | None:intergenic |
| AGACCATTACCAAATGAAAT+GGG | 0.515078 | 5.4:+11824771 | MS.gene59331:CDS |
| AATGGTAGGAGAAAGGAAGA+GGG | 0.515787 | 5.4:-11824939 | None:intergenic |
| CGAGGTAGGAATGGAAGAGT+TGG | 0.519042 | 5.4:+11825457 | MS.gene59331:CDS |
| GAAGCCATGCAATGGAGTGC+AGG | 0.519451 | 5.4:+11825350 | MS.gene59331:CDS |
| TTTCCATGTTGGTAATCTCC+CGG | 0.520653 | 5.4:-11823825 | None:intergenic |
| CTTCTACGGTGGACTCTGGT+AGG | 0.522842 | 5.4:+11825207 | MS.gene59331:CDS |
| GCGGATGAATGGTAGGAGAA+AGG | 0.522930 | 5.4:-11824946 | None:intergenic |
| TGACCGGCGGTGGATCCTCC+GGG | 0.535108 | 5.4:+11823807 | MS.gene59331:CDS |
| GGTAAGTGGTTACGTCGCGA+AGG | 0.535768 | 5.4:-11825149 | None:intergenic |
| TGACTCATCGCATTCTGGAA+TGG | 0.535852 | 5.4:-11825180 | None:intergenic |
| GTTGGACTCGTAGGGTATGA+TGG | 0.536021 | 5.4:-11824894 | None:intergenic |
| TCGCATTCTGGAATGGTGGA+AGG | 0.536086 | 5.4:-11825173 | None:intergenic |
| GGTTGGATCGTTGAAGAAGA+TGG | 0.537404 | 5.4:+11823992 | MS.gene59331:CDS |
| AGACTGTGGACTTGGGAATG+AGG | 0.539676 | 5.4:-11824850 | None:intergenic |
| GCATTCTGGAATGGTGGAAG+GGG | 0.540873 | 5.4:-11825171 | None:intergenic |
| CTACGGTGGACTCTGGTAGG+TGG | 0.546694 | 5.4:+11825210 | MS.gene59331:CDS |
| GAGAATTCACGAGGTAGGAA+TGG | 0.546800 | 5.4:+11825448 | MS.gene59331:CDS |
| ATAAGATTAAAAGTAGGGGA+AGG | 0.548784 | 5.4:-11825272 | None:intergenic |
| TGGCGTAACAGGAGCACTGT+TGG | 0.550863 | 5.4:-11825012 | None:intergenic |
| ACGAGTCCAACTCGCATGGA+TGG | 0.553802 | 5.4:+11824906 | MS.gene59331:CDS |
| ATGGCAGAGTCGTGAAGCCG+TGG | 0.556658 | 5.4:+11825417 | MS.gene59331:CDS |
| TGAATTCTCTCACCTTCCCA+CGG | 0.561289 | 5.4:-11825434 | None:intergenic |
| TACGGTGGACTCTGGTAGGT+GGG | 0.563236 | 5.4:+11825211 | MS.gene59331:CDS |
| GGTTTCATAAGATTAAAAGT+AGG | 0.565689 | 5.4:-11825278 | None:intergenic |
| AAGAGTTGGAGCTTACTCTA+GGG | 0.569146 | 5.4:+11825471 | MS.gene59331:CDS |
| GGGAAGGAGGAGCTGCACCA+TGG | 0.569302 | 5.4:-11825256 | None:intergenic |
| TATTCAGGTTTACGAGCTCA+AGG | 0.569731 | 5.4:+11823905 | MS.gene59331:CDS |
| GATCACTCCCCAGAGTTCGA+TGG | 0.577805 | 5.4:+11825310 | MS.gene59331:CDS |
| CCCTACGAGTCCAACTCGCA+TGG | 0.578171 | 5.4:+11824902 | MS.gene59331:CDS |
| TTATGTTGCGGATGAATGGT+AGG | 0.578326 | 5.4:-11824953 | None:intergenic |
| GATGCTTCTACGGTGGACTC+TGG | 0.578522 | 5.4:+11825203 | MS.gene59331:CDS |
| GTAAGTGGTTACGTCGCGAA+GGG | 0.578993 | 5.4:-11825148 | None:intergenic |
| AGAGTCGTGAAGCCGTGGGA+AGG | 0.580925 | 5.4:+11825422 | MS.gene59331:CDS |
| GTAATTCCATCCATGCGAGT+TGG | 0.581360 | 5.4:-11824912 | None:intergenic |
| ACGAAGAAGACTGTGGACTT+GGG | 0.581874 | 5.4:-11824857 | None:intergenic |
| CTCATCGCATTCTGGAATGG+TGG | 0.583351 | 5.4:-11825177 | None:intergenic |
| AGATTAAAAGTAGGGGAAGG+AGG | 0.584415 | 5.4:-11825269 | None:intergenic |
| AGCACTGTTGGAAATCCTAA+GGG | 0.585276 | 5.4:-11825000 | None:intergenic |
| CCTCCGGGAGATTACCAACA+TGG | 0.594081 | 5.4:+11823822 | MS.gene59331:CDS |
| GGTATGATGGTATTGGACTC+GGG | 0.595404 | 5.4:-11824881 | None:intergenic |
| TCCATGCGAGTTGGACTCGT+AGG | 0.595405 | 5.4:-11824903 | None:intergenic |
| GGTGAGAGAATTCACGAGGT+AGG | 0.595934 | 5.4:+11825443 | MS.gene59331:CDS |
| TTTCAGACAACAACTGCCCA+TGG | 0.605613 | 5.4:+11825239 | MS.gene59331:CDS |
| GTATGAATGAAGCCATGCAA+TGG | 0.607575 | 5.4:+11825342 | MS.gene59331:CDS |
| TGAACCTGCACTCCATTGCA+TGG | 0.609662 | 5.4:-11825354 | None:intergenic |
| ATGGTAGGAGAAAGGAAGAG+GGG | 0.614566 | 5.4:-11824938 | None:intergenic |
| CCATGCGAGTTGGACTCGTA+GGG | 0.617530 | 5.4:-11824902 | None:intergenic |
| CTTGGGAATGAGGAAGATTG+TGG | 0.619428 | 5.4:-11824840 | None:intergenic |
| GCAGGTTCAGCTACTGAGAG+AGG | 0.625141 | 5.4:+11825368 | MS.gene59331:CDS |
| CATTCTGGAATGGTGGAAGG+GGG | 0.627664 | 5.4:-11825170 | None:intergenic |
| AGATGGTACTACTTATCGAA+AGG | 0.630271 | 5.4:+11824009 | MS.gene59331:CDS |
| TTGGGATTGAAGTTATGTTG+CGG | 0.631769 | 5.4:-11824965 | None:intergenic |
| AGTTAAAGGAAGCATTACAA+AGG | 0.631880 | 5.4:-11825082 | None:intergenic |
| CTGTTGGAAATCCTAAGGGG+TGG | 0.634143 | 5.4:-11824996 | None:intergenic |
| TGAGTCAGATGCTTCTACGG+TGG | 0.636061 | 5.4:+11825196 | MS.gene59331:CDS |
| CGAAGGGCTTGATGGTGCAG+AGG | 0.637998 | 5.4:-11825132 | None:intergenic |
| TTTCATAAGATTAAAAGTAG+GGG | 0.644722 | 5.4:-11825276 | None:intergenic |
| TCTCCCGGAGGATCCACCGC+CGG | 0.650116 | 5.4:-11823810 | None:intergenic |
| TGGCAGAGTCGTGAAGCCGT+GGG | 0.659403 | 5.4:+11825418 | MS.gene59331:CDS |
| TTCGCCGGAACGATGACCGG+CGG | 0.661466 | 5.4:+11823794 | None:intergenic |
| CTCGGGAACGAAGAAGACTG+TGG | 0.666027 | 5.4:-11824864 | None:intergenic |
| CCATTACCAAATGAAATGGG+AGG | 0.683902 | 5.4:+11824774 | MS.gene59331:CDS |
| CCATGTTGGTAATCTCCCGG+AGG | 0.694898 | 5.4:-11823822 | None:intergenic |
| GCACTGTTGGAAATCCTAAG+GGG | 0.712978 | 5.4:-11824999 | None:intergenic |
| CTTCTCGGAGAAGAAAGAGG+TGG | 0.713886 | 5.4:-11825032 | None:intergenic |
| ATCATATCCATCGAACTCTG+GGG | 0.720256 | 5.4:-11825317 | None:intergenic |
| GGAAGGTGAGAGAATTCACG+AGG | 0.745542 | 5.4:+11825439 | MS.gene59331:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATAAAATTGATT+CGG | - | chr5.4:11824336-11824355 | None:intergenic | 10.0% |
| !!! | TTTTCCAATTTAATAGTTTA+TGG | - | chr5.4:11824656-11824675 | None:intergenic | 15.0% |
| !! | AACACCATAAACTATTAAAT+TGG | + | chr5.4:11824649-11824668 | MS.gene59331:intron | 20.0% |
| !! | ATTTAATAGTTTATGGTGTT+TGG | - | chr5.4:11824649-11824668 | None:intergenic | 20.0% |
| !! | GTTTCATAAGATTAAAAGTA+GGG | - | chr5.4:11825280-11825299 | None:intergenic | 20.0% |
| !! | TTTCATAAGATTAAAAGTAG+GGG | - | chr5.4:11825279-11825298 | None:intergenic | 20.0% |
| ! | AATCGAAGTTAAATCAATTC+TGG | - | chr5.4:11824237-11824256 | None:intergenic | 25.0% |
| ! | AATCGATCTTATAAGAAACT+TGG | + | chr5.4:11824130-11824149 | MS.gene59331:intron | 25.0% |
| ! | GAGTAAATGAATTTGAATCA+GGG | + | chr5.4:11824741-11824760 | MS.gene59331:intron | 25.0% |
| ! | GGTTTCATAAGATTAAAAGT+AGG | - | chr5.4:11825281-11825300 | None:intergenic | 25.0% |
| ! | TCATTATTATCACAGTGTTT+AGG | - | chr5.4:11823944-11823963 | None:intergenic | 25.0% |
| ! | TGAGTAAATGAATTTGAATC+AGG | + | chr5.4:11824740-11824759 | MS.gene59331:intron | 25.0% |
| !! | AGAATTGATTTAACTTCGAT+TGG | + | chr5.4:11824236-11824255 | MS.gene59331:intron | 25.0% |
| AGACCATTACCAAATGAAAT+GGG | + | chr5.4:11824771-11824790 | MS.gene59331:CDS | 30.0% | |
| ATAAGATTAAAAGTAGGGGA+AGG | - | chr5.4:11825275-11825294 | None:intergenic | 30.0% | |
| CTGTTTAAGTCACATTAAGT+CGG | + | chr5.4:11824472-11824491 | MS.gene59331:intron | 30.0% | |
| TTTAGTAGCTTATGTGTGTT+TGG | - | chr5.4:11824376-11824395 | None:intergenic | 30.0% | |
| ! | TCGAAATCAATTTTTGTCAG+AGG | + | chr5.4:11824619-11824638 | MS.gene59331:intron | 30.0% |
| !! | AGTTAAAGGAAGCATTACAA+AGG | - | chr5.4:11825085-11825104 | None:intergenic | 30.0% |
| !! | GTTAAAGGAAGCATTACAAA+GGG | - | chr5.4:11825084-11825103 | None:intergenic | 30.0% |
| !!! | TCAGATTTTGACTTTGAGAA+TGG | + | chr5.4:11825398-11825417 | MS.gene59331:CDS | 30.0% |
| AGATGGTACTACTTATCGAA+AGG | + | chr5.4:11824009-11824028 | MS.gene59331:CDS | 35.0% | |
| ATTGCTGCTAAGATCTATTC+AGG | + | chr5.4:11823890-11823909 | MS.gene59331:CDS | 35.0% | |
| GAACAAGCACTCATATTTGT+TGG | - | chr5.4:11824804-11824823 | None:intergenic | 35.0% | |
| GAGACCATTACCAAATGAAA+TGG | + | chr5.4:11824770-11824789 | MS.gene59331:CDS | 35.0% | |
| TATCATATCCATCGAACTCT+GGG | - | chr5.4:11825321-11825340 | None:intergenic | 35.0% | |
| TTGGGATTGAAGTTATGTTG+CGG | - | chr5.4:11824968-11824987 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCTCTTTCCATGT+TGG | - | chr5.4:11823839-11823858 | None:intergenic | 35.0% |
| !! | CTTGGTTTTTGTGATCTAAG+TGG | + | chr5.4:11824148-11824167 | MS.gene59331:intron | 35.0% |
| AAGAGTTGGAGCTTACTCTA+GGG | + | chr5.4:11825471-11825490 | MS.gene59331:CDS | 40.0% | |
| AATGAGGAAGATTGTGGACT+TGG | - | chr5.4:11824837-11824856 | None:intergenic | 40.0% | |
| AATGGTAGGAGAAAGGAAGA+GGG | - | chr5.4:11824942-11824961 | None:intergenic | 40.0% | |
| AGATTAAAAGTAGGGGAAGG+AGG | - | chr5.4:11825272-11825291 | None:intergenic | 40.0% | |
| AGCACTGTTGGAAATCCTAA+GGG | - | chr5.4:11825003-11825022 | None:intergenic | 40.0% | |
| ATCATATCCATCGAACTCTG+GGG | - | chr5.4:11825320-11825339 | None:intergenic | 40.0% | |
| CCATTACCAAATGAAATGGG+AGG | + | chr5.4:11824774-11824793 | MS.gene59331:CDS | 40.0% | |
| CCTCCCATTTCATTTGGTAA+TGG | - | chr5.4:11824777-11824796 | None:intergenic | 40.0% | |
| GAAGTTATGTTGCGGATGAA+TGG | - | chr5.4:11824960-11824979 | None:intergenic | 40.0% | |
| GTATCATATCCATCGAACTC+TGG | - | chr5.4:11825322-11825341 | None:intergenic | 40.0% | |
| GTATGAATGAAGCCATGCAA+TGG | + | chr5.4:11825342-11825361 | MS.gene59331:CDS | 40.0% | |
| TTATGTTGCGGATGAATGGT+AGG | - | chr5.4:11824956-11824975 | None:intergenic | 40.0% | |
| ! | TAAGGGGTGGAAGATTTGTT+GGG | - | chr5.4:11824986-11825005 | None:intergenic | 40.0% |
| ! | TATTCAGGTTTACGAGCTCA+AGG | + | chr5.4:11823905-11823924 | MS.gene59331:CDS | 40.0% |
| ! | TTCATGTGCGTTTAGTTCAG+CGG | - | chr5.4:11824527-11824546 | None:intergenic | 40.0% |
| !! | AAAGCTCTTTGTTCTGAAGC+TGG | + | chr5.4:11823971-11823990 | MS.gene59331:CDS | 40.0% |
| !! | GCTTTTCGCTTTGAACTTCT+CGG | - | chr5.4:11825050-11825069 | None:intergenic | 40.0% |
| !! | TTTCCATGTTGGTAATCTCC+CGG | - | chr5.4:11823828-11823847 | None:intergenic | 40.0% |
| AACGAAGAAGACTGTGGACT+TGG | - | chr5.4:11824861-11824880 | None:intergenic | 45.0% | |
| ACGAAGAAGACTGTGGACTT+GGG | - | chr5.4:11824860-11824879 | None:intergenic | 45.0% | |
| ATGGTAGGAGAAAGGAAGAG+GGG | - | chr5.4:11824941-11824960 | None:intergenic | 45.0% | |
| ATGGTGCAGAGGTAGCAAAA+AGG | - | chr5.4:11825124-11825143 | None:intergenic | 45.0% | |
| CAACAAATCTTCCACCCCTT+AGG | + | chr5.4:11824985-11825004 | MS.gene59331:CDS | 45.0% | |
| CGATGAGTCAGATGCTTCTA+CGG | + | chr5.4:11825193-11825212 | MS.gene59331:CDS | 45.0% | |
| CTAAGGGGTGGAAGATTTGT+TGG | - | chr5.4:11824987-11825006 | None:intergenic | 45.0% | |
| CTCGTAGGGTATGATGGTAT+TGG | - | chr5.4:11824891-11824910 | None:intergenic | 45.0% | |
| CTTGGGAATGAGGAAGATTG+TGG | - | chr5.4:11824843-11824862 | None:intergenic | 45.0% | |
| GAACTTCTCGGAGAAGAAAG+AGG | - | chr5.4:11825038-11825057 | None:intergenic | 45.0% | |
| GAAGAGTTGGAGCTTACTCT+AGG | + | chr5.4:11825470-11825489 | MS.gene59331:CDS | 45.0% | |
| GAATGGTAGGAGAAAGGAAG+AGG | - | chr5.4:11824943-11824962 | None:intergenic | 45.0% | |
| GAGAATTCACGAGGTAGGAA+TGG | + | chr5.4:11825448-11825467 | MS.gene59331:CDS | 45.0% | |
| GCACTGTTGGAAATCCTAAG+GGG | - | chr5.4:11825002-11825021 | None:intergenic | 45.0% | |
| GGAGTTCCTCCCATTTCATT+TGG | - | chr5.4:11824783-11824802 | None:intergenic | 45.0% | |
| GGTTGGATCGTTGAAGAAGA+TGG | + | chr5.4:11823992-11824011 | MS.gene59331:CDS | 45.0% | |
| GTAATTCCATCCATGCGAGT+TGG | - | chr5.4:11824915-11824934 | None:intergenic | 45.0% | |
| TGAATTCTCTCACCTTCCCA+CGG | - | chr5.4:11825437-11825456 | None:intergenic | 45.0% | |
| TGGTGCAGAGGTAGCAAAAA+GGG | - | chr5.4:11825123-11825142 | None:intergenic | 45.0% | |
| TTTCAGACAACAACTGCCCA+TGG | + | chr5.4:11825239-11825258 | MS.gene59331:CDS | 45.0% | |
| ! | GAGCACTGTTGGAAATCCTA+AGG | - | chr5.4:11825004-11825023 | None:intergenic | 45.0% |
| ! | GGGTATGATGGTATTGGACT+CGG | - | chr5.4:11824885-11824904 | None:intergenic | 45.0% |
| ! | GGTATGATGGTATTGGACTC+GGG | - | chr5.4:11824884-11824903 | None:intergenic | 45.0% |
| ! | TGACTCATCGCATTCTGGAA+TGG | - | chr5.4:11825183-11825202 | None:intergenic | 45.0% |
| !! | CTCTTTGTTCTGAAGCTGGT+TGG | + | chr5.4:11823975-11823994 | MS.gene59331:CDS | 45.0% |
| !! | TTGGAGCTTACTCTAGGGTT+TGG | + | chr5.4:11825476-11825495 | MS.gene59331:CDS | 45.0% |
| AGACTGTGGACTTGGGAATG+AGG | - | chr5.4:11824853-11824872 | None:intergenic | 50.0% | |
| CGAGGTAGGAATGGAAGAGT+TGG | + | chr5.4:11825457-11825476 | MS.gene59331:CDS | 50.0% | |
| CTGTTGGAAATCCTAAGGGG+TGG | - | chr5.4:11824999-11825018 | None:intergenic | 50.0% | |
| CTTCTCGGAGAAGAAAGAGG+TGG | - | chr5.4:11825035-11825054 | None:intergenic | 50.0% | |
| GAAGAAAGAGGTGGCGTAAC+AGG | - | chr5.4:11825026-11825045 | None:intergenic | 50.0% | |
| GCATCTGACTCATCGCATTC+TGG | - | chr5.4:11825188-11825207 | None:intergenic | 50.0% | |
| GCGGATGAATGGTAGGAGAA+AGG | - | chr5.4:11824949-11824968 | None:intergenic | 50.0% | |
| GGAAGGTGAGAGAATTCACG+AGG | + | chr5.4:11825439-11825458 | MS.gene59331:CDS | 50.0% | |
| GGTGAGAGAATTCACGAGGT+AGG | + | chr5.4:11825443-11825462 | MS.gene59331:CDS | 50.0% | |
| GGTGCAGAGGTAGCAAAAAG+GGG | - | chr5.4:11825122-11825141 | None:intergenic | 50.0% | |
| GTAAGTGGTTACGTCGCGAA+GGG | - | chr5.4:11825151-11825170 | None:intergenic | 50.0% | |
| GTGCAGAGGTAGCAAAAAGG+GGG | - | chr5.4:11825121-11825140 | None:intergenic | 50.0% | |
| GTGGCGAAACGTGGAGTTAA+AGG | - | chr5.4:11825099-11825118 | None:intergenic | 50.0% | |
| GTTGGACTCGTAGGGTATGA+TGG | - | chr5.4:11824897-11824916 | None:intergenic | 50.0% | |
| TCAGCTACTGAGAGAGGTAG+AGG | + | chr5.4:11825374-11825393 | MS.gene59331:CDS | 50.0% | |
| TGAACCTGCACTCCATTGCA+TGG | - | chr5.4:11825357-11825376 | None:intergenic | 50.0% | |
| TGAGTCAGATGCTTCTACGG+TGG | + | chr5.4:11825196-11825215 | MS.gene59331:CDS | 50.0% | |
| !! | CATTCTGGAATGGTGGAAGG+GGG | - | chr5.4:11825173-11825192 | None:intergenic | 50.0% |
| !! | CGCATTCTGGAATGGTGGAA+GGG | - | chr5.4:11825175-11825194 | None:intergenic | 50.0% |
| !! | CTCATCGCATTCTGGAATGG+TGG | - | chr5.4:11825180-11825199 | None:intergenic | 50.0% |
| !! | GCATTCTGGAATGGTGGAAG+GGG | - | chr5.4:11825174-11825193 | None:intergenic | 50.0% |
| !! | TCGCATTCTGGAATGGTGGA+AGG | - | chr5.4:11825176-11825195 | None:intergenic | 50.0% |
| AAAAAGGGGGTGGCGAAACG+TGG | - | chr5.4:11825108-11825127 | None:intergenic | 55.0% | |
| ACGAGTCCAACTCGCATGGA+TGG | + | chr5.4:11824906-11824925 | MS.gene59331:CDS | 55.0% | |
| CAGAGGTAGCAAAAAGGGGG+TGG | - | chr5.4:11825118-11825137 | None:intergenic | 55.0% | |
| CCTCCGGGAGATTACCAACA+TGG | + | chr5.4:11823822-11823841 | MS.gene59331:CDS | 55.0% | |
| CTCGGGAACGAAGAAGACTG+TGG | - | chr5.4:11824867-11824886 | None:intergenic | 55.0% | |
| GAAGCCATGCAATGGAGTGC+AGG | + | chr5.4:11825350-11825369 | MS.gene59331:CDS | 55.0% | |
| GATCACTCCCCAGAGTTCGA+TGG | + | chr5.4:11825310-11825329 | MS.gene59331:CDS | 55.0% | |
| GCAGGTTCAGCTACTGAGAG+AGG | + | chr5.4:11825368-11825387 | MS.gene59331:CDS | 55.0% | |
| GGTAAGTGGTTACGTCGCGA+AGG | - | chr5.4:11825152-11825171 | None:intergenic | 55.0% | |
| TGGGGAGTGATCTGCATTGC+TGG | - | chr5.4:11825302-11825321 | None:intergenic | 55.0% | |
| TTACGTCGCGAAGGGCTTGA+TGG | - | chr5.4:11825143-11825162 | None:intergenic | 55.0% | |
| ! | CCATGCGAGTTGGACTCGTA+GGG | - | chr5.4:11824905-11824924 | None:intergenic | 55.0% |
| ! | CTTCTACGGTGGACTCTGGT+AGG | + | chr5.4:11825207-11825226 | MS.gene59331:CDS | 55.0% |
| ! | GAATGGTGGAAGGGGGTAAG+TGG | - | chr5.4:11825166-11825185 | None:intergenic | 55.0% |
| ! | GATGCTTCTACGGTGGACTC+TGG | + | chr5.4:11825203-11825222 | MS.gene59331:CDS | 55.0% |
| ! | TACGGTGGACTCTGGTAGGT+GGG | + | chr5.4:11825211-11825230 | MS.gene59331:CDS | 55.0% |
| ! | TCCATGCGAGTTGGACTCGT+AGG | - | chr5.4:11824906-11824925 | None:intergenic | 55.0% |
| !! | CCATGTTGGTAATCTCCCGG+AGG | - | chr5.4:11823825-11823844 | None:intergenic | 55.0% |
| !! | TGGCGTAACAGGAGCACTGT+TGG | - | chr5.4:11825015-11825034 | None:intergenic | 55.0% |
| AGAGTCGTGAAGCCGTGGGA+AGG | + | chr5.4:11825422-11825441 | MS.gene59331:CDS | 60.0% | |
| ATGGCAGAGTCGTGAAGCCG+TGG | + | chr5.4:11825417-11825436 | MS.gene59331:CDS | 60.0% | |
| CCCTACGAGTCCAACTCGCA+TGG | + | chr5.4:11824902-11824921 | MS.gene59331:CDS | 60.0% | |
| GGAAGGAGGAGCTGCACCAT+GGG | - | chr5.4:11825258-11825277 | None:intergenic | 60.0% | |
| TGGCAGAGTCGTGAAGCCGT+GGG | + | chr5.4:11825418-11825437 | MS.gene59331:CDS | 60.0% | |
| ! | CTACGGTGGACTCTGGTAGG+TGG | + | chr5.4:11825210-11825229 | MS.gene59331:CDS | 60.0% |
| !! | CGAAGGGCTTGATGGTGCAG+AGG | - | chr5.4:11825135-11825154 | None:intergenic | 60.0% |
| ATGACCGGCGGTGGATCCTC+CGG | + | chr5.4:11823806-11823825 | MS.gene59331:CDS | 65.0% | |
| GGGAAGGAGGAGCTGCACCA+TGG | - | chr5.4:11825259-11825278 | None:intergenic | 65.0% | |
| TCTCCCGGAGGATCCACCGC+CGG | - | chr5.4:11823813-11823832 | None:intergenic | 70.0% | |
| TGACCGGCGGTGGATCCTCC+GGG | + | chr5.4:11823807-11823826 | MS.gene59331:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11823806 | 11825508 | 11823806 | ID=MS.gene59331 |
| chr5.4 | mRNA | 11823806 | 11825508 | 11823806 | ID=MS.gene59331.t1;Parent=MS.gene59331 |
| chr5.4 | exon | 11823806 | 11824030 | 11823806 | ID=MS.gene59331.t1.exon1;Parent=MS.gene59331.t1 |
| chr5.4 | CDS | 11823806 | 11824030 | 11823806 | ID=cds.MS.gene59331.t1;Parent=MS.gene59331.t1 |
| chr5.4 | exon | 11824762 | 11825508 | 11824762 | ID=MS.gene59331.t1.exon2;Parent=MS.gene59331.t1 |
| chr5.4 | CDS | 11824762 | 11825508 | 11824762 | ID=cds.MS.gene59331.t1;Parent=MS.gene59331.t1 |
| Gene Sequence |
| Protein sequence |
