AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60918


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60918.t1 MTR_2g062820 94.700 283 11 1 1 283 1 279 0.0 512
MS.gene60918.t1 MTR_3g085670 40.367 109 64 1 62 170 14 121 1.33e-19 84.0
MS.gene60918.t1 MTR_2g087870 37.736 106 65 1 65 170 26 130 1.34e-17 78.6
MS.gene60918.t1 MTR_2g087870 38.182 110 67 1 65 174 26 134 4.48e-16 73.6
MS.gene60918.t1 MTR_7g117385 31.356 118 80 1 59 176 104 220 1.31e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60918.t1 AT3G12685 45.570 237 70 5 46 282 35 212 6.03e-59 187
MS.gene60918.t1 AT1G24350 38.679 106 64 1 65 170 22 126 1.88e-18 80.5
MS.gene60918.t1 AT1G24350 38.679 106 64 1 65 170 22 126 1.96e-18 80.5
MS.gene60918.t1 AT1G24350 38.679 106 64 1 65 170 22 126 2.70e-18 80.1
MS.gene60918.t1 AT1G24350 38.679 106 64 1 65 170 22 126 8.10e-18 79.3
MS.gene60918.t1 AT1G24350 38.679 106 64 1 65 170 22 126 9.69e-18 79.7
MS.gene60918.t1 AT3G21610 38.318 107 65 1 64 170 32 137 1.41e-17 79.0
MS.gene60918.t1 AT1G67600 36.792 106 66 1 65 170 18 122 2.50e-16 75.1
MS.gene60918.t1 AT3G21610 41.772 79 46 0 92 170 7 85 3.27e-15 70.9
MS.gene60918.t1 AT3G61770 32.203 118 79 1 59 176 134 250 4.48e-14 71.2

Find 53 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTGAGTTTCTGCTTT+TGG 0.171124 2.4:-31095959 None:intergenic
GTTCCAAGAAAGCACTTCTT+TGG 0.261253 2.4:+31095991 MS.gene60918:CDS
CGCTCAAATTGCTCATAATA+AGG 0.268738 2.4:+31092582 MS.gene60918:CDS
CTTTATGTTTGGAATGTAAA+TGG 0.279739 2.4:-31095898 None:intergenic
GTTCCAAAGAAGTGCTTTCT+TGG 0.295867 2.4:-31095994 None:intergenic
TACAGAAACACAGAAGTAAA+TGG 0.337447 2.4:-31093238 None:intergenic
TATCAGACCATCTTTATGTT+TGG 0.349443 2.4:-31095909 None:intergenic
ATTTCTTCTCTTGCTGCTGC+TGG 0.351086 2.4:+31092544 MS.gene60918:CDS
GCTGGAGTTTCAATGGCAAT+TGG 0.360865 2.4:+31093202 MS.gene60918:CDS
TTTACTTCTGTGTTTCTGTA+TGG 0.371099 2.4:+31093241 MS.gene60918:CDS
AAGTGCTTTCTTGGAACAAA+AGG 0.375096 2.4:-31095985 None:intergenic
GTTGTAGCTGGTGGTTTACT+TGG 0.399977 2.4:+31096184 MS.gene60918:CDS
ACCATCAGCAACTAACTTTG+AGG 0.405848 2.4:-31096119 None:intergenic
AATTGTTGATGATGAAGAAA+TGG 0.414445 2.4:-31092478 None:intergenic
CAGGGTGTAAGAAGAGAAGT+AGG 0.415373 2.4:+31095827 MS.gene60918:intron
GTGGCTTGTGCAACATTACT+TGG 0.416239 2.4:+31093445 MS.gene60918:CDS
GTAAATGGTTGACATCCATT+TGG 0.417219 2.4:-31095883 None:intergenic
AGTGAGGGAAATTGAGAAGA+AGG 0.418480 2.4:-31092442 None:intergenic
CAACAAACTACTTCTCCAAA+TGG 0.418502 2.4:+31095868 MS.gene60918:CDS
GATTGCAGCTGGAGTTTCAA+TGG 0.421077 2.4:+31093195 MS.gene60918:CDS
CTGGAGTTTCAATGGCAATT+GGG 0.423404 2.4:+31093203 MS.gene60918:CDS
GGTCTTGCAGTTGTGTATGC+TGG 0.423581 2.4:+31093622 MS.gene60918:CDS
GCAAATGTATTAGTTAAATC+AGG 0.423899 2.4:+31096031 MS.gene60918:CDS
GCTTAGGTTCTGATTGCAGC+TGG 0.432168 2.4:+31093184 MS.gene60918:intron
TCCTTTCTACGAAAACTGAA+TGG 0.434415 2.4:-31092502 None:intergenic
TCTGATTATGTATGATGCTC+AGG 0.450552 2.4:+31093645 MS.gene60918:CDS
CATACAGAAGAGTGTGATGA+TGG 0.451794 2.4:-31093307 None:intergenic
TTTGGTGGATTGGATGATCC+AGG 0.472553 2.4:-31095941 None:intergenic
ATCAAGGCTCTTATTCAAGC+TGG 0.483515 2.4:+31093277 MS.gene60918:CDS
CTGAATTATCTTACCTCTCA+AGG 0.488483 2.4:-31093468 None:intergenic
TGGCAAAGAGTTTGATATCA+AGG 0.498368 2.4:+31093261 MS.gene60918:CDS
TTACATTCCAAACATAAAGA+TGG 0.499115 2.4:+31095902 MS.gene60918:CDS
TGGATTTCTTTGTTTGAGTG+AGG 0.504915 2.4:-31092458 None:intergenic
AGCAAGAGAAGAAATTCTAA+AGG 0.529822 2.4:-31092536 None:intergenic
ACATTTGCATTAGCTTGTTG+TGG 0.529942 2.4:-31096016 None:intergenic
AGTGCTTTCTTGGAACAAAA+GGG 0.539067 2.4:-31095984 None:intergenic
GGATTTCTTTGTTTGAGTGA+GGG 0.539654 2.4:-31092457 None:intergenic
CAACATTACTTGGCCTTGAG+AGG 0.541258 2.4:+31093455 MS.gene60918:CDS
ACCTCAAAGTTAGTTGCTGA+TGG 0.541385 2.4:+31096118 MS.gene60918:CDS
GAGAAGTAGGGATTCATGCT+AGG 0.554119 2.4:+31095840 MS.gene60918:CDS
CAAAAGCAGAAACTCAAGAA+AGG 0.564432 2.4:+31095960 MS.gene60918:CDS
TGCATCTTCTAAGAAATCAG+AGG 0.571365 2.4:-31096089 None:intergenic
AGGGTGTAAGAAGAGAAGTA+GGG 0.572177 2.4:+31095828 MS.gene60918:intron
AAGGCTCTTATTCAAGCTGG+AGG 0.574041 2.4:+31093280 MS.gene60918:CDS
ATTGTAGCTCCTCGTCACAT+TGG 0.583988 2.4:-31096066 None:intergenic
CTGCCATTAAAAGAATCTGT+TGG 0.586554 2.4:+31096145 MS.gene60918:CDS
ACTGAGGTTGAAGTTGTAGC+TGG 0.595839 2.4:+31096172 MS.gene60918:CDS
CAAAATAAGCCAATGTGACG+AGG 0.599512 2.4:+31096057 MS.gene60918:CDS
ATACAGAAGAGTGTGATGAT+GGG 0.621467 2.4:-31093306 None:intergenic
AGGCTCTTATTCAAGCTGGA+GGG 0.631515 2.4:+31093281 MS.gene60918:CDS
GAGGTTGAAGTTGTAGCTGG+TGG 0.638885 2.4:+31096175 MS.gene60918:CDS
GGTCTGATAAACTCTCAACC+TGG 0.642727 2.4:+31095923 MS.gene60918:CDS
AGAATCTGTTGGTCATACTG+AGG 0.680148 2.4:+31096156 MS.gene60918:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTAGATTATTAATTC+AGG + chr2.4:31094503-31094522 MS.gene60918:intron 10.0%
!! AAACTAAATAACATGAAAAA+TGG - chr2.4:31093691-31093710 None:intergenic 15.0%
!! AACTAAATAACATGAAAAAT+GGG - chr2.4:31093690-31093709 None:intergenic 15.0%
!! CAACAAAACAATATAAAATT+TGG - chr2.4:31093116-31093135 None:intergenic 15.0%
!!! CCTTATAATGTTTTAAAAAT+CGG - chr2.4:31095655-31095674 None:intergenic 15.0%
!!! CGATTTTTAAAACATTATAA+GGG + chr2.4:31095653-31095672 MS.gene60918:intron 15.0%
!!! CTTATAATGTTTTAAAAATC+GGG - chr2.4:31095654-31095673 None:intergenic 15.0%
!!! TAGTTGTTTAAATTTTCTTT+TGG + chr2.4:31093412-31093431 MS.gene60918:intron 15.0%
!!! TGATTTTCTCAAATAATTAT+TGG + chr2.4:31092800-31092819 MS.gene60918:intron 15.0%
!! AAAAACAAGTGATACAAAAA+TGG - chr2.4:31092612-31092631 None:intergenic 20.0%
!! AAAACAAGTGATACAAAAAT+GGG - chr2.4:31092611-31092630 None:intergenic 20.0%
!! AATATATCCTCTAAGTATAA+AGG - chr2.4:31094731-31094750 None:intergenic 20.0%
!! AATGTTCTTAAAAGCTTAAA+AGG + chr2.4:31094635-31094654 MS.gene60918:intron 20.0%
!! ATAAGCTGAAAATAGTTTAT+GGG - chr2.4:31095084-31095103 None:intergenic 20.0%
!! ATATATTTCAAAGTGAACAT+TGG - chr2.4:31094207-31094226 None:intergenic 20.0%
!! ATTGATCAATGAAGATAATA+AGG + chr2.4:31094137-31094156 MS.gene60918:intron 20.0%
!! GTTATTATTAGTAAATAAGC+AGG + chr2.4:31093908-31093927 MS.gene60918:intron 20.0%
!! TATATTTCAAAGTGAACATT+GGG - chr2.4:31094206-31094225 None:intergenic 20.0%
!! TATGATATTGTTATGTAACT+CGG - chr2.4:31094255-31094274 None:intergenic 20.0%
!! TGAAAAATGTGTTTATAAGT+GGG + chr2.4:31093038-31093057 MS.gene60918:intron 20.0%
!! TTCTATAAACAGAAATTACA+AGG - chr2.4:31095736-31095755 None:intergenic 20.0%
!!! ATTAAGAAAGTCTTTAAAGA+GGG + chr2.4:31094560-31094579 MS.gene60918:intron 20.0%
!!! CCGATTTTTAAAACATTATA+AGG + chr2.4:31095652-31095671 MS.gene60918:intron 20.0%
!!! GTTTAAATTTTCTTTTGGAT+AGG + chr2.4:31093417-31093436 MS.gene60918:intron 20.0%
!!! TATTTACTTATTTCTTGTGA+AGG + chr2.4:31094832-31094851 MS.gene60918:intron 20.0%
!!! TTTGTGATATTTTTTTGCTT+AGG + chr2.4:31093168-31093187 MS.gene60918:intron 20.0%
! AAAAGAAAAGTTGTCTTCAA+TGG - chr2.4:31094921-31094940 None:intergenic 25.0%
! AAAATGACAGAATTTAACCA+AGG + chr2.4:31094066-31094085 MS.gene60918:intron 25.0%
! AAACTTAATGAAGGAATCTT+AGG + chr2.4:31093781-31093800 MS.gene60918:intron 25.0%
! ATCAATGATCAAACTATTTG+TGG + chr2.4:31093863-31093882 MS.gene60918:intron 25.0%
! ATTTACTAATAATAACACCG+TGG - chr2.4:31093904-31093923 None:intergenic 25.0%
! CTGAAAAATGTGTTTATAAG+TGG + chr2.4:31093037-31093056 MS.gene60918:intron 25.0%
! GAAAAATGTGTTTATAAGTG+GGG + chr2.4:31093039-31093058 MS.gene60918:intron 25.0%
! GATAAGCTGAAAATAGTTTA+TGG - chr2.4:31095085-31095104 None:intergenic 25.0%
! GCAAATGTATTAGTTAAATC+AGG + chr2.4:31096031-31096050 MS.gene60918:CDS 25.0%
! GGTAAATCATTTCTAATAAC+CGG + chr2.4:31094016-31094035 MS.gene60918:intron 25.0%
! GTGTGTAGTAAACAATAAAA+GGG - chr2.4:31094807-31094826 None:intergenic 25.0%
! TCAAATAAGTCAATCAAAAG+AGG - chr2.4:31094994-31095013 None:intergenic 25.0%
! TGTGTGTAGTAAACAATAAA+AGG - chr2.4:31094808-31094827 None:intergenic 25.0%
! TGTTTATTATACAAATGCAG+AGG + chr2.4:31093580-31093599 MS.gene60918:intron 25.0%
! TTAAAGACTTTCTTAATCTG+AGG - chr2.4:31094557-31094576 None:intergenic 25.0%
! TTACATTCCAAACATAAAGA+TGG + chr2.4:31095902-31095921 MS.gene60918:CDS 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr2.4:31095680-31095699 MS.gene60918:intron 25.0%
!! CTTTATGTTTGGAATGTAAA+TGG - chr2.4:31095901-31095920 None:intergenic 25.0%
!! GATTAAGAAAGTCTTTAAAG+AGG + chr2.4:31094559-31094578 MS.gene60918:intron 25.0%
!! TCAAATAATTATTGGTAACC+CGG + chr2.4:31092808-31092827 MS.gene60918:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr2.4:31095681-31095700 MS.gene60918:intron 25.0%
!! TTTTGTAGATAGTATAACTG+AGG - chr2.4:31095707-31095726 None:intergenic 25.0%
!!! AATTGTTGATGATGAAGAAA+TGG - chr2.4:31092481-31092500 None:intergenic 25.0%
!!! ATAATGTTTTAAAAATCGGG+AGG - chr2.4:31095651-31095670 None:intergenic 25.0%
!!! TGTTACTTTTTTCACGTTAA+TGG + chr2.4:31095431-31095450 MS.gene60918:intron 25.0%
AAAAGCTTAAAAGGCTTCAA+CGG + chr2.4:31094644-31094663 MS.gene60918:intron 30.0%
AAAATCGATCTATACGATGA+GGG - chr2.4:31093071-31093090 None:intergenic 30.0%
AATAATAACACCGTGGTAAT+TGG - chr2.4:31093897-31093916 None:intergenic 30.0%
ACTATGATTTCTATACCGTA+AGG - chr2.4:31094698-31094717 None:intergenic 30.0%
AGATGAAGAAAACTGAAACA+AGG - chr2.4:31095237-31095256 None:intergenic 30.0%
AGCAAGAGAAGAAATTCTAA+AGG - chr2.4:31092539-31092558 None:intergenic 30.0%
AGGTTCTACAAAGAAAATAG+TGG + chr2.4:31094359-31094378 MS.gene60918:intron 30.0%
AGTAAAAGAAACTCGCTATA+TGG - chr2.4:31095320-31095339 None:intergenic 30.0%
AGTCTCATAAGTACTTATGT+CGG - chr2.4:31095026-31095045 None:intergenic 30.0%
ATATGATATCCTATGAAGCA+CGG - chr2.4:31092854-31092873 None:intergenic 30.0%
ATCGTAAACATAGTGAATGA+AGG + chr2.4:31094339-31094358 MS.gene60918:intron 30.0%
CAATTGCAGATAAAGAAGAA+TGG - chr2.4:31095297-31095316 None:intergenic 30.0%
CTATGATTTCTATACCGTAA+GGG - chr2.4:31094697-31094716 None:intergenic 30.0%
GAAATGAAAGTAGGATTTAC+TGG - chr2.4:31093349-31093368 None:intergenic 30.0%
GACTATGTCAAACTTAATGA+AGG + chr2.4:31093772-31093791 MS.gene60918:intron 30.0%
GAGTCTATCAAATATTCGTT+AGG + chr2.4:31092916-31092935 MS.gene60918:intron 30.0%
GTATGAATATCCCTATTAGT+CGG + chr2.4:31095579-31095598 MS.gene60918:intron 30.0%
TACAAACTTTATCTCAGACA+TGG + chr2.4:31094421-31094440 MS.gene60918:intron 30.0%
TACAGAAACACAGAAGTAAA+TGG - chr2.4:31093241-31093260 None:intergenic 30.0%
TACCACAGATGAAAACTTAT+TGG + chr2.4:31094952-31094971 MS.gene60918:intron 30.0%
TATCAGACCATCTTTATGTT+TGG - chr2.4:31095912-31095931 None:intergenic 30.0%
TCAATGAAGATAATAAGGAG+TGG + chr2.4:31094142-31094161 MS.gene60918:intron 30.0%
TCATAGTGAGGATAATTACA+GGG - chr2.4:31094887-31094906 None:intergenic 30.0%
TCATTCACTATGTTTACGAT+AGG - chr2.4:31094339-31094358 None:intergenic 30.0%
TCCTCTAAGTATAAAGGATA+TGG - chr2.4:31094725-31094744 None:intergenic 30.0%
TGTATGAAATGGTATGTTTC+TGG + chr2.4:31093980-31093999 MS.gene60918:intron 30.0%
TTTATGTCTCTGCAAATCTT+GGG + chr2.4:31092629-31092648 MS.gene60918:intron 30.0%
! AAAGTAGGATTTACTGGTTA+AGG - chr2.4:31093343-31093362 None:intergenic 30.0%
! AAGTAGGATTTACTGGTTAA+GGG - chr2.4:31093342-31093361 None:intergenic 30.0%
! CAAATAATTATTGGTAACCC+GGG + chr2.4:31092809-31092828 MS.gene60918:intron 30.0%
! GTTGTTTCATTTGCTGAATT+GGG + chr2.4:31093132-31093151 MS.gene60918:intron 30.0%
! TACCAATAAGTTTTCATCTG+TGG - chr2.4:31094957-31094976 None:intergenic 30.0%
! TGACCAACAGATTCTTTTAA+TGG - chr2.4:31096151-31096170 None:intergenic 30.0%
! TTTACTTCTGTGTTTCTGTA+TGG + chr2.4:31093241-31093260 MS.gene60918:CDS 30.0%
! TTTATCTCAGACATGGATTA+TGG + chr2.4:31094428-31094447 MS.gene60918:intron 30.0%
! TTTTATGTCTCTGCAAATCT+TGG + chr2.4:31092628-31092647 MS.gene60918:intron 30.0%
!! ACGTTTTTGAGAACATGTTT+AGG - chr2.4:31092879-31092898 None:intergenic 30.0%
!! ATCGTATAGATCGATTTTGT+AGG + chr2.4:31093073-31093092 MS.gene60918:intron 30.0%
!! TGTTGTTTCATTTGCTGAAT+TGG + chr2.4:31093131-31093150 MS.gene60918:intron 30.0%
!!! CTCAAAAACGTGTTTTAAGA+TGG + chr2.4:31092888-31092907 MS.gene60918:intron 30.0%
!!! GTTTACTTGGATTTTTGGTT+GGG + chr2.4:31096197-31096216 MS.gene60918:CDS 30.0%
AAAGCTTAAAAGGCTTCAAC+GGG + chr2.4:31094645-31094664 MS.gene60918:intron 35.0%
AAGTGCTTTCTTGGAACAAA+AGG - chr2.4:31095988-31096007 None:intergenic 35.0%
ACAACTGCAAGACCAAAAAT+GGG - chr2.4:31093616-31093635 None:intergenic 35.0%
ACTTTCTTAATCTGAGGACT+CGG - chr2.4:31094551-31094570 None:intergenic 35.0%
AGACTATATCTCATCCAATG+TGG - chr2.4:31093019-31093038 None:intergenic 35.0%
AGCAAAGATACTCGATATCT+TGG - chr2.4:31093828-31093847 None:intergenic 35.0%
AGTGCTTTCTTGGAACAAAA+GGG - chr2.4:31095987-31096006 None:intergenic 35.0%
ATATTCATACACACACGCAT+AGG - chr2.4:31095569-31095588 None:intergenic 35.0%
ATCACTGAATATGACCTGTT+TGG + chr2.4:31095772-31095791 MS.gene60918:intron 35.0%
ATCGTAAGATCCGACTAATA+GGG - chr2.4:31095592-31095611 None:intergenic 35.0%
CAAAAGCAGAAACTCAAGAA+AGG + chr2.4:31095960-31095979 MS.gene60918:CDS 35.0%
CAAAATCGATCTATACGATG+AGG - chr2.4:31093072-31093091 None:intergenic 35.0%
CAACAAACTACTTCTCCAAA+TGG + chr2.4:31095868-31095887 MS.gene60918:CDS 35.0%
CGCTCAAATTGCTCATAATA+AGG + chr2.4:31092582-31092601 MS.gene60918:CDS 35.0%
CTGAATTATCTTACCTCTCA+AGG - chr2.4:31093471-31093490 None:intergenic 35.0%
CTGCCATTAAAAGAATCTGT+TGG + chr2.4:31096145-31096164 MS.gene60918:CDS 35.0%
GACATAAGTACTTATGAGAC+TGG + chr2.4:31095025-31095044 MS.gene60918:intron 35.0%
GCCATATCCTTTATACTTAG+AGG + chr2.4:31094721-31094740 MS.gene60918:intron 35.0%
GGAATTCATACCAATTACCA+CGG + chr2.4:31093884-31093903 MS.gene60918:intron 35.0%
GGCATAGATGAAATGAAAGT+AGG - chr2.4:31093358-31093377 None:intergenic 35.0%
GTAAATGGTTGACATCCATT+TGG - chr2.4:31095886-31095905 None:intergenic 35.0%
GTCATAGTGAGGATAATTAC+AGG - chr2.4:31094888-31094907 None:intergenic 35.0%
GTCTTAATTGTAAGCCAAAC+AGG - chr2.4:31095789-31095808 None:intergenic 35.0%
GTGAAACAACACTATTCAAG+TGG - chr2.4:31093379-31093398 None:intergenic 35.0%
TACAGTTGTAGCCTATAGAA+AGG - chr2.4:31094298-31094317 None:intergenic 35.0%
TCATAAGTACTTATGTCGGT+AGG - chr2.4:31095022-31095041 None:intergenic 35.0%
TCCTTTCTACGAAAACTGAA+TGG - chr2.4:31092505-31092524 None:intergenic 35.0%
TCTGATTATGTATGATGCTC+AGG + chr2.4:31093645-31093664 MS.gene60918:CDS 35.0%
TGGCAAAGAGTTTGATATCA+AGG + chr2.4:31093261-31093280 MS.gene60918:CDS 35.0%
TTAATTCAGGTGCCAAATGA+TGG + chr2.4:31094516-31094535 MS.gene60918:intron 35.0%
TTGACATAGTCTAAGTACAG+CGG - chr2.4:31093763-31093782 None:intergenic 35.0%
! ATACAGAAGAGTGTGATGAT+GGG - chr2.4:31093309-31093328 None:intergenic 35.0%
! CTTTCTTGAGTTTCTGCTTT+TGG - chr2.4:31095962-31095981 None:intergenic 35.0%
! GACAATGTTTTGTCATAGTG+AGG - chr2.4:31094899-31094918 None:intergenic 35.0%
! GGATTTCTTTGTTTGAGTGA+GGG - chr2.4:31092460-31092479 None:intergenic 35.0%
! TACGATAGGTTGAAATGACA+AGG - chr2.4:31094325-31094344 None:intergenic 35.0%
! TCCATTCAGTTTTCGTAGAA+AGG + chr2.4:31092501-31092520 MS.gene60918:CDS 35.0%
! TGCATCTTCTAAGAAATCAG+AGG - chr2.4:31096092-31096111 None:intergenic 35.0%
! TGGATTTCTTTGTTTGAGTG+AGG - chr2.4:31092461-31092480 None:intergenic 35.0%
! TGGTGGTTTACTTGGATTTT+TGG + chr2.4:31096192-31096211 MS.gene60918:CDS 35.0%
! TGTGATTTCTGTGATTTGCA+GGG + chr2.4:31095809-31095828 MS.gene60918:intron 35.0%
!! AAAATAGTGGATGTCACTTG+GGG + chr2.4:31094372-31094391 MS.gene60918:intron 35.0%
!! ACATTTGCATTAGCTTGTTG+TGG - chr2.4:31096019-31096038 None:intergenic 35.0%
!! AGAAAATAGTGGATGTCACT+TGG + chr2.4:31094370-31094389 MS.gene60918:intron 35.0%
!! GAAAATAGTGGATGTCACTT+GGG + chr2.4:31094371-31094390 MS.gene60918:intron 35.0%
!! TCAGTTATGCTGACTTAGTA+TGG + chr2.4:31093487-31093506 MS.gene60918:intron 35.0%
!!! AGAATGGAAGTATTTTGCCA+TGG - chr2.4:31095281-31095300 None:intergenic 35.0%
!!! ATGTTTTAAAAATCGGGAGG+TGG - chr2.4:31095648-31095667 None:intergenic 35.0%
!!! CTGTCATTTTCTTTTCTCCT+TGG - chr2.4:31094056-31094075 None:intergenic 35.0%
!!! GGTTTACTTGGATTTTTGGT+TGG + chr2.4:31096196-31096215 MS.gene60918:CDS 35.0%
ACCATCAGCAACTAACTTTG+AGG - chr2.4:31096122-31096141 None:intergenic 40.0%
ACCTCAAAGTTAGTTGCTGA+TGG + chr2.4:31096118-31096137 MS.gene60918:CDS 40.0%
AGAATCTGTTGGTCATACTG+AGG + chr2.4:31096156-31096175 MS.gene60918:CDS 40.0%
AGGGTGTAAGAAGAGAAGTA+GGG + chr2.4:31095828-31095847 MS.gene60918:intron 40.0%
AGTAACTCATACAGCAACAG+TGG - chr2.4:31095405-31095424 None:intergenic 40.0%
AGTGAGGGAAATTGAGAAGA+AGG - chr2.4:31092445-31092464 None:intergenic 40.0%
ATACACACACACGCACAAAA+AGG - chr2.4:31093965-31093984 None:intergenic 40.0%
ATCAAGGCTCTTATTCAAGC+TGG + chr2.4:31093277-31093296 MS.gene60918:CDS 40.0%
ATGTAGACGACGCTAACTAA+TGG + chr2.4:31094464-31094483 MS.gene60918:intron 40.0%
CAAAATAAGCCAATGTGACG+AGG + chr2.4:31096057-31096076 MS.gene60918:CDS 40.0%
CACAACTGCAAGACCAAAAA+TGG - chr2.4:31093617-31093636 None:intergenic 40.0%
CCTATAGAAAGGAGACCAAA+AGG - chr2.4:31094287-31094306 None:intergenic 40.0%
CGGTCTATCTTTCCATCATT+TGG - chr2.4:31094531-31094550 None:intergenic 40.0%
CTATACCGTAAGGGTTGTTT+CGG - chr2.4:31094688-31094707 None:intergenic 40.0%
CTCTGTTTGACCAATGAACA+TGG - chr2.4:31094107-31094126 None:intergenic 40.0%
CTGGAGTTTCAATGGCAATT+GGG + chr2.4:31093203-31093222 MS.gene60918:CDS 40.0%
GAATCCGAGCATGGTTAAAA+GGG - chr2.4:31093741-31093760 None:intergenic 40.0%
GATCGTAAGATCCGACTAAT+AGG - chr2.4:31095593-31095612 None:intergenic 40.0%
GGCACATCAAAAGACTGATA+CGG - chr2.4:31093720-31093739 None:intergenic 40.0%
GTACGTTGTGCTCATCTAAT+TGG - chr2.4:31092710-31092729 None:intergenic 40.0%
TGTCTGCACTTATGACGTTA+TGG + chr2.4:31095479-31095498 MS.gene60918:intron 40.0%
TTGAATGTAATGACATGCGC+CGG - chr2.4:31092768-31092787 None:intergenic 40.0%
TTTGCCATGGACAGTATGTA+TGG - chr2.4:31095268-31095287 None:intergenic 40.0%
! ACGCCTTTGATCAAAAGTGT+CGG - chr2.4:31092732-31092751 None:intergenic 40.0%
! ATCATATCCGACACTCCTTT+TGG + chr2.4:31094269-31094288 MS.gene60918:intron 40.0%
! CATACAGAAGAGTGTGATGA+TGG - chr2.4:31093310-31093329 None:intergenic 40.0%
! CCTTTTGGTCTCCTTTCTAT+AGG + chr2.4:31094284-31094303 MS.gene60918:intron 40.0%
! CTGTGATTTCTGTGATTTGC+AGG + chr2.4:31095808-31095827 MS.gene60918:intron 40.0%
! TATACCGTAAGGGTTGTTTC+GGG - chr2.4:31094687-31094706 None:intergenic 40.0%
! TTCTTTTGGATAGGCAACAG+TGG + chr2.4:31093426-31093445 MS.gene60918:intron 40.0%
!! AGTTTCTGCTTTTGGTGGAT+TGG - chr2.4:31095954-31095973 None:intergenic 40.0%
!! CTTGGTTTTTGTCACATGTC+CGG - chr2.4:31094038-31094057 None:intergenic 40.0%
!! GTACCGACACTTTTGATCAA+AGG + chr2.4:31092726-31092745 MS.gene60918:intron 40.0%
!! GTTCCAAAGAAGTGCTTTCT+TGG - chr2.4:31095997-31096016 None:intergenic 40.0%
!! GTTCCAAGAAAGCACTTCTT+TGG + chr2.4:31095991-31096010 MS.gene60918:CDS 40.0%
!! GTTGTTTCGGGCTTTTCAAT+AGG - chr2.4:31094675-31094694 None:intergenic 40.0%
!! GTTTCTGGAACTGTGAATGT+GGG + chr2.4:31093995-31094014 MS.gene60918:intron 40.0%
!! TCTTGAGTTTCTGCTTTTGG+TGG - chr2.4:31095959-31095978 None:intergenic 40.0%
!! TGTTTCTGGAACTGTGAATG+TGG + chr2.4:31093994-31094013 MS.gene60918:intron 40.0%
!!! GGCTACTTTTACACACTATC+AGG + chr2.4:31092937-31092956 MS.gene60918:intron 40.0%
AAAGCCCGAAACAACCCTTA+CGG + chr2.4:31094680-31094699 MS.gene60918:intron 45.0%
AAGGCTCTTATTCAAGCTGG+AGG + chr2.4:31093280-31093299 MS.gene60918:CDS 45.0%
ACACGCCATATGTTTAGTCG+TGG + chr2.4:31092971-31092990 MS.gene60918:intron 45.0%
ACAGACACATAACACAACCC+GGG - chr2.4:31092829-31092848 None:intergenic 45.0%
ACTGAGGTTGAAGTTGTAGC+TGG + chr2.4:31096172-31096191 MS.gene60918:CDS 45.0%
AGGCTCTTATTCAAGCTGGA+GGG + chr2.4:31093281-31093300 MS.gene60918:CDS 45.0%
AGTATAACTGAGGCCCTGTT+TGG - chr2.4:31095697-31095716 None:intergenic 45.0%
AGTGTGTTGAGAGTCCACAT+TGG + chr2.4:31093002-31093021 MS.gene60918:intron 45.0%
ATTGTAGCTCCTCGTCACAT+TGG - chr2.4:31096069-31096088 None:intergenic 45.0%
ATTTCTTCTCTTGCTGCTGC+TGG + chr2.4:31092544-31092563 MS.gene60918:CDS 45.0%
CACAGACACATAACACAACC+CGG - chr2.4:31092830-31092849 None:intergenic 45.0%
CACGCCATATGTTTAGTCGT+GGG + chr2.4:31092972-31092991 MS.gene60918:intron 45.0%
CAGGGTGTAAGAAGAGAAGT+AGG + chr2.4:31095827-31095846 MS.gene60918:intron 45.0%
CCAATGAACATGGTCACTGT+AGG - chr2.4:31094097-31094116 None:intergenic 45.0%
CCTACAGTGACCATGTTCAT+TGG + chr2.4:31094094-31094113 MS.gene60918:intron 45.0%
CGGACATGTGACAAAAACCA+AGG + chr2.4:31094036-31094055 MS.gene60918:intron 45.0%
GACCAAAAATGGGATCTGAC+AGG - chr2.4:31093606-31093625 None:intergenic 45.0%
GAGAAGTAGGGATTCATGCT+AGG + chr2.4:31095840-31095859 MS.gene60918:CDS 45.0%
GATTGCAGCTGGAGTTTCAA+TGG + chr2.4:31093195-31093214 MS.gene60918:CDS 45.0%
GCAGATGCATATCTATCTGC+AGG - chr2.4:31094608-31094627 None:intergenic 45.0%
GCTGGAGTTTCAATGGCAAT+TGG + chr2.4:31093202-31093221 MS.gene60918:CDS 45.0%
GGAATCCGAGCATGGTTAAA+AGG - chr2.4:31093742-31093761 None:intergenic 45.0%
GGTCACTGTAGGTTAAACCT+TGG - chr2.4:31094086-31094105 None:intergenic 45.0%
GGTCTGATAAACTCTCAACC+TGG + chr2.4:31095923-31095942 MS.gene60918:CDS 45.0%
GGTTGAAAGATCGTAACTCG+AGG - chr2.4:31095627-31095646 None:intergenic 45.0%
GTAACTCGAGGATCATAGCA+TGG - chr2.4:31095615-31095634 None:intergenic 45.0%
GTGCGTGTGTGTGTATGAAA+TGG + chr2.4:31093969-31093988 MS.gene60918:intron 45.0%
GTTGTAGCTGGTGGTTTACT+TGG + chr2.4:31096184-31096203 MS.gene60918:CDS 45.0%
TGAGCCATACATACTGTCCA+TGG + chr2.4:31095261-31095280 MS.gene60918:intron 45.0%
TGGACAGTATGTATGGCTCA+AGG - chr2.4:31095261-31095280 None:intergenic 45.0%
! AAGGAGACCAAAAGGAGTGT+CGG - chr2.4:31094279-31094298 None:intergenic 45.0%
! GACACTTTTGATCAAAGGCG+TGG + chr2.4:31092731-31092750 MS.gene60918:intron 45.0%
! GTGGCTTGTGCAACATTACT+TGG + chr2.4:31093445-31093464 MS.gene60918:CDS 45.0%
! TCACTTGGGGTTTTGCATGT+GGG + chr2.4:31094385-31094404 MS.gene60918:intron 45.0%
! TGTGCCCTTTTAACCATGCT+CGG + chr2.4:31093734-31093753 MS.gene60918:intron 45.0%
!! CAACATTACTTGGCCTTGAG+AGG + chr2.4:31093455-31093474 MS.gene60918:CDS 45.0%
!! TTTGGTGGATTGGATGATCC+AGG - chr2.4:31095944-31095963 None:intergenic 45.0%
!!! ACTTGGATTTTTGGTTGGGC+TGG + chr2.4:31096201-31096220 MS.gene60918:CDS 45.0%
AGGCGTGGCCATTATATGAC+CGG + chr2.4:31092746-31092765 MS.gene60918:intron 50.0%
CACGCCCACGACTAAACATA+TGG - chr2.4:31092979-31092998 None:intergenic 50.0%
GAGGTTGAAGTTGTAGCTGG+TGG + chr2.4:31096175-31096194 MS.gene60918:CDS 50.0%
GGTCTTGCAGTTGTGTATGC+TGG + chr2.4:31093622-31093641 MS.gene60918:CDS 50.0%
TGTCTGTGTCCGTGCTTCAT+AGG + chr2.4:31092842-31092861 MS.gene60918:intron 50.0%
TGTTTCCAGAGACTGCCACT+GGG + chr2.4:31095370-31095389 MS.gene60918:intron 50.0%
TTGTTTCCAGAGACTGCCAC+TGG + chr2.4:31095369-31095388 MS.gene60918:intron 50.0%
! GACATGCGCCGGTCATATAA+TGG - chr2.4:31092757-31092776 None:intergenic 50.0%
! GCTTAGGTTCTGATTGCAGC+TGG + chr2.4:31093184-31093203 MS.gene60918:intron 50.0%
! GGCCTGTCAGATCCCATTTT+TGG + chr2.4:31093601-31093620 MS.gene60918:CDS 50.0%
! GTCACTTGGGGTTTTGCATG+TGG + chr2.4:31094384-31094403 MS.gene60918:intron 50.0%
! GTGGCAGTCTCTGGAAACAA+AGG - chr2.4:31095369-31095388 None:intergenic 50.0%
AGTACAGCGGAATCCGAGCA+TGG - chr2.4:31093750-31093769 None:intergenic 55.0%
CAGTGGTTAAACACGCCCAG+TGG - chr2.4:31095388-31095407 None:intergenic 55.0%
ACACGCCCAGTGGCAGTCTC+TGG - chr2.4:31095378-31095397 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 31092406 31096243 31092406 ID=MS.gene60918
chr2.4 mRNA 31092406 31096243 31092406 ID=MS.gene60918.t1;Parent=MS.gene60918
chr2.4 exon 31092406 31092603 31092406 ID=MS.gene60918.t1.exon1;Parent=MS.gene60918.t1
chr2.4 CDS 31092406 31092603 31092406 ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1
chr2.4 exon 31093190 31093324 31093190 ID=MS.gene60918.t1.exon2;Parent=MS.gene60918.t1
chr2.4 CDS 31093190 31093324 31093190 ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1
chr2.4 exon 31093439 31093476 31093439 ID=MS.gene60918.t1.exon3;Parent=MS.gene60918.t1
chr2.4 CDS 31093439 31093476 31093439 ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1
chr2.4 exon 31093600 31093666 31093600 ID=MS.gene60918.t1.exon4;Parent=MS.gene60918.t1
chr2.4 CDS 31093600 31093666 31093600 ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1
chr2.4 exon 31095830 31096243 31095830 ID=MS.gene60918.t1.exon5;Parent=MS.gene60918.t1
chr2.4 CDS 31095830 31096243 31095830 ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1
Gene Sequence

>MS.gene60918

ATGATGTTGTTGCAACAATCAAATTTCTGTCTCATTCCTTCTTCTCAATTTCCCTCACTCAAACAAAGAAATCCATTTCTTCATCATCAACAATTTCCATTCAGTTTTCGTAGAAAGGATAAAGCTTCTACCTTTAGAATTTCTTCTCTTGCTGCTGCTGGTTTTTTCAATGATGTCGCTCAAATTGCTCATAATAAGGTATCCCATTTTTGTATCACTTGTTTTTATGTCTCTGCAAATCTTGGGTTTTGCTCAAAATTCTGTTTTTGTTATTTGTTTTTTAAGCTAGCTATTGAGAATTCCAATTAGATGAGCACAACGTACCGACACTTTTGATCAAAGGCGTGGCCATTATATGACCGGCGCATGTCATTACATTCAATTATATGATACATGATTTTCTCAAATAATTATTGGTAACCCGGGTTGTGTTATGTGTCTGTGTCCGTGCTTCATAGGATATCATATGACCTAAACATGTTCTCAAAAACGTGTTTTAAGATGGTATTAGAGTCTATCAAATATTCGTTAGGCTACTTTTACACACTATCAGGACACTCATGTTACACGCCATATGTTTAGTCGTGGGCGTGAAGAGTGTGTTGAGAGTCCACATTGGATGAGATATAGTCTGAAAAATGTGTTTATAAGTGGGGAGACATCCCTCATCGTATAGATCGATTTTGTAGGTTTTAGTTTAGTCTAATCCAAATTTTATATTGTTTTGTTGTTTCATTTGCTGAATTGGGATTTGTGTTCTCATTTGTGATATTTTTTTGCTTAGGTTCTGATTGCAGCTGGAGTTTCAATGGCAATTGGGCAACTTTCTAAGCCATTTACTTCTGTGTTTCTGTATGGCAAAGAGTTTGATATCAAGGCTCTTATTCAAGCTGGAGGGTTCCCATCATCACACTCTTCTGTATGAACTTGAAACCCTTAACCAGTAAATCCTACTTTCATTTCATCTATGCCACTTGAATAGTGTTGTTTCACTTTTATTCTCACATAGTTGTTTAAATTTTCTTTTGGATAGGCAACAGTGGCTTGTGCAACATTACTTGGCCTTGAGAGGTAAGATAATTCAGTTATGCTGACTTAGTATGGCATTTTTCTCTGCACTCTTTTGAAAATTTCAATTTTCTTAAGAATATAATGTTTCTGTGTTATTTTTAATTGTTTATTATACAAATGCAGAGGCCTGTCAGATCCCATTTTTGGTCTTGCAGTTGTGTATGCTGGTCTGATTATGTATGATGCTCAGGTGTGATGTTCTTCTCAGATCCCATTTTTCATGTTATTTAGTTTGTGTATCCGTATCAGTCTTTTGATGTGCCCTTTTAACCATGCTCGGATTCCGCTGTACTTAGACTATGTCAAACTTAATGAAGGAATCTTAGGTCAGATTAAAATTAAGAACTTCCAAGATATCGAGTATCTTTGCTGTATGATTGTCTCTAATCAATGATCAAACTATTTGTGGAATTCATACCAATTACCACGGTGTTATTATTAGTAAATAAGCAGGAAATGATATAATTAAAAAAATTCAGTTATAGCCTTTTTGTGCGTGTGTGTGTATGAAATGGTATGTTTCTGGAACTGTGAATGTGGGTAAATCATTTCTAATAACCGGACATGTGACAAAAACCAAGGAGAAAAGAAAATGACAGAATTTAACCAAGGTTTAACCTACAGTGACCATGTTCATTGGTCAAACAGAGAAAATTTCTCATTGATCAATGAAGATAATAAGGAGTGGTCACTCTCACTCAACAATCAAACTCAAATTGTAATGTACCCAATGTTCACTTTGAAATATATTATAAGATGATCTAATCAGTAACTACCGAGTTACATAACAATATCATATCCGACACTCCTTTTGGTCTCCTTTCTATAGGCTACAACTGTATTGACCTTGTCATTTCAACCTATCGTAAACATAGTGAATGAAGGTTCTACAAAGAAAATAGTGGATGTCACTTGGGGTTTTGCATGTGGGAAAGAAATGATTGTACAAACTTTATCTCAGACATGGATTATGGTGACGATTGATTCATGTAGACGACGCTAACTAATGGAAGAATATTGTTGCTGTAATTTTAGATTATTAATTCAGGTGCCAAATGATGGAAAGATAGACCGAGTCCTCAGATTAAGAAAGTCTTTAAAGAGGGCTGATAATTTGATATGATGTTACCTGCAGATAGATATGCATCTGCTCAATATAATGTTCTTAAAAGCTTAAAAGGCTTCAACGGGCTATCCTATTGAAAAGCCCGAAACAACCCTTACGGTATAGAAATCATAGTCTAGCCATATCCTTTATACTTAGAGGATATATTGCATGTCTGCACTGACTACTTGTCTTAACATTTTTTTAATCTAAACTTGTCTTCCCTTTTATTGTTTACTACACACACAGATATTTACTTATTTCTTGTGAAGGTTTTTAAACTTCTTGAAACTTTTTGTTCACCCTGTAATTATCCTCACTATGACAAAACATTGTCCATTGAAGACAACTTTTCTTTTGAGCATATTGATACCACAGATGAAAACTTATTGGTACTTGTGAATTACAGCCTCTTTTGATTGACTTATTTGAGCTTACCTACCGACATAAGTACTTATGAGACTGGTCGAGAGAGCTTACGTAAGCAGCTTATGATATACCCATAAACTATTTTCAGCTTATCTCATAAGTTCTTCAGAATAGCTTATGAAAACAATTTGACTTTGTTTTTATATTTTTCTTTTTTTGTAGAAATAGTTTATACTTAAGTGTTTGTTGAATCGTGAGTATGATCAGTGAATTACATGATCATCCTTGTTTCAGTTTTCTTCATCTTCCTTGAGCCATACATACTGTCCATGGCAAAATACTTCCATTCTTCTTTATCTGCAATTGCCATATAGCGAGTTTCTTTTACTAAGACGCGACTGTTACTGTACGAGTTCCTTTGTTTCCAGAGACTGCCACTGGGCGTGTTTAACCACTGTTGCTGTATGAGTTACTTGTTTCTGTTACTTTTTTCACGTTAATGGCTTCAAACAATGTATTCAAACAGTGTGTCTGCACTTATGACGTTATGGTTATGACTTATGAACGTAATTTAATGTTGTGATTTAGATGTTATTTTCGTCATCTATGATAATTCCTATGCGTGTGTGTATGAATATCCCTATTAGTCGGATCTTACGATCCATGCTATGATCCTCGAGTTACGATCTTTCAACCACCTCCCGATTTTTAAAACATTATAAGGGTTTAATTAAGTTGTTTATCCAAACAGGGCCTCAGTTATACTATCTACAAAATTTTATCCTTGTAATTTCTGTTTATAGAATTTTATTGTTTTTGTTATCACTGAATATGACCTGTTTGGCTTACAATTAAGACTGTGATTTCTGTGATTTGCAGGGTGTAAGAAGAGAAGTAGGGATTCATGCTAGGACAATCAACAAACTACTTCTCCAAATGGATGTCAACCATTTACATTCCAAACATAAAGATGGTCTGATAAACTCTCAACCTGGATCATCCAATCCACCAAAAGCAGAAACTCAAGAAAGGTCCCTTTTGTTCCAAGAAAGCACTTCTTTGGAACCACAACAAGCTAATGCAAATGTATTAGTTAAATCAGGAAGCAAAATAAGCCAATGTGACGAGGAGCTACAATCCTCTGATTTCTTAGAAGATGCAAAAGAAACCTCAAAGTTAGTTGCTGATGGTCTACTGCCATTAAAAGAATCTGTTGGTCATACTGAGGTTGAAGTTGTAGCTGGTGGTTTACTTGGATTTTTGGTTGGGCTGGCTGTGTATAATTTGAAGTAA

Protein sequence

>MS.gene60918.t1

MMLLQQSNFCLIPSSQFPSLKQRNPFLHHQQFPFSFRRKDKASTFRISSLAAAGFFNDVAQIAHNKVLIAAGVSMAIGQLSKPFTSVFLYGKEFDIKALIQAGGFPSSHSSATVACATLLGLERGLSDPIFGLAVVYAGLIMYDAQGVRREVGIHARTINKLLLQMDVNHLHSKHKDGLINSQPGSSNPPKAETQERSLLFQESTSLEPQQANANVLVKSGSKISQCDEELQSSDFLEDAKETSKLVADGLLPLKESVGHTEVEVVAGGLLGFLVGLAVYNLK