Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60918.t1 | XP_003595876.1 | 94.7 | 283 | 11 | 1 | 1 | 283 | 1 | 279 | 1.10E-138 | 502.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60918.t1 | O32107 | 33.6 | 122 | 68 | 2 | 88 | 209 | 28 | 136 | 1.3e-10 | 68.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60918.t1 | G7IT34 | 94.7 | 283 | 11 | 1 | 1 | 283 | 1 | 279 | 8.2e-139 | 502.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049993 | MS.gene60918 | 0.824869 | 6.39E-54 | -1.69E-46 |
MS.gene050426 | MS.gene60918 | -0.82801 | 1.14E-54 | -1.69E-46 |
MS.gene050464 | MS.gene60918 | 0.810604 | 1.06E-50 | -1.69E-46 |
MS.gene050640 | MS.gene60918 | 0.811466 | 6.90E-51 | -1.69E-46 |
MS.gene050670 | MS.gene60918 | 0.802793 | 4.74E-49 | -1.69E-46 |
MS.gene051525 | MS.gene60918 | 0.820516 | 6.58E-53 | -1.69E-46 |
MS.gene051582 | MS.gene60918 | 0.836931 | 7.01E-57 | -1.69E-46 |
MS.gene051983 | MS.gene60918 | 0.834779 | 2.46E-56 | -1.69E-46 |
MS.gene052011 | MS.gene60918 | -0.850401 | 1.74E-60 | -1.69E-46 |
MS.gene053330 | MS.gene60918 | 0.806328 | 8.68E-50 | -1.69E-46 |
MS.gene054102 | MS.gene60918 | 0.807833 | 4.17E-50 | -1.69E-46 |
MS.gene054183 | MS.gene60918 | 0.860016 | 2.77E-63 | -1.69E-46 |
MS.gene054719 | MS.gene60918 | 0.806468 | 8.11E-50 | -1.69E-46 |
MS.gene054918 | MS.gene60918 | 0.806054 | 9.91E-50 | -1.69E-46 |
MS.gene055217 | MS.gene60918 | 0.801343 | 9.42E-49 | -1.69E-46 |
MS.gene055369 | MS.gene60918 | 0.818977 | 1.48E-52 | -1.69E-46 |
MS.gene05553 | MS.gene60918 | 0.861216 | 1.20E-63 | -1.69E-46 |
MS.gene055564 | MS.gene60918 | 0.818068 | 2.38E-52 | -1.69E-46 |
MS.gene05594 | MS.gene60918 | 0.815592 | 8.54E-52 | -1.69E-46 |
MS.gene056337 | MS.gene60918 | 0.80987 | 1.53E-50 | -1.69E-46 |
MS.gene056514 | MS.gene60918 | 0.804279 | 2.33E-49 | -1.69E-46 |
MS.gene056723 | MS.gene60918 | 0.833273 | 5.86E-56 | -1.69E-46 |
MS.gene056899 | MS.gene60918 | -0.820813 | 5.62E-53 | -1.69E-46 |
MS.gene056979 | MS.gene60918 | 0.83068 | 2.56E-55 | -1.69E-46 |
MS.gene057476 | MS.gene60918 | 0.813277 | 2.78E-51 | -1.69E-46 |
MS.gene058142 | MS.gene60918 | 0.82884 | 7.19E-55 | -1.69E-46 |
MS.gene05886 | MS.gene60918 | 0.878554 | 2.56E-69 | -1.69E-46 |
MS.gene059247 | MS.gene60918 | 0.803915 | 2.78E-49 | -1.69E-46 |
MS.gene059420 | MS.gene60918 | 0.840597 | 7.90E-58 | -1.69E-46 |
MS.gene059958 | MS.gene60918 | 0.804672 | 1.93E-49 | -1.69E-46 |
MS.gene061114 | MS.gene60918 | -0.856326 | 3.47E-62 | -1.69E-46 |
MS.gene061159 | MS.gene60918 | 0.835423 | 1.69E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60918.t1 | MTR_2g062820 | 94.700 | 283 | 11 | 1 | 1 | 283 | 1 | 279 | 0.0 | 512 |
MS.gene60918.t1 | MTR_3g085670 | 40.367 | 109 | 64 | 1 | 62 | 170 | 14 | 121 | 1.33e-19 | 84.0 |
MS.gene60918.t1 | MTR_2g087870 | 37.736 | 106 | 65 | 1 | 65 | 170 | 26 | 130 | 1.34e-17 | 78.6 |
MS.gene60918.t1 | MTR_2g087870 | 38.182 | 110 | 67 | 1 | 65 | 174 | 26 | 134 | 4.48e-16 | 73.6 |
MS.gene60918.t1 | MTR_7g117385 | 31.356 | 118 | 80 | 1 | 59 | 176 | 104 | 220 | 1.31e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60918.t1 | AT3G12685 | 45.570 | 237 | 70 | 5 | 46 | 282 | 35 | 212 | 6.03e-59 | 187 |
MS.gene60918.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 1.88e-18 | 80.5 |
MS.gene60918.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 1.96e-18 | 80.5 |
MS.gene60918.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 2.70e-18 | 80.1 |
MS.gene60918.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 8.10e-18 | 79.3 |
MS.gene60918.t1 | AT1G24350 | 38.679 | 106 | 64 | 1 | 65 | 170 | 22 | 126 | 9.69e-18 | 79.7 |
MS.gene60918.t1 | AT3G21610 | 38.318 | 107 | 65 | 1 | 64 | 170 | 32 | 137 | 1.41e-17 | 79.0 |
MS.gene60918.t1 | AT1G67600 | 36.792 | 106 | 66 | 1 | 65 | 170 | 18 | 122 | 2.50e-16 | 75.1 |
MS.gene60918.t1 | AT3G21610 | 41.772 | 79 | 46 | 0 | 92 | 170 | 7 | 85 | 3.27e-15 | 70.9 |
MS.gene60918.t1 | AT3G61770 | 32.203 | 118 | 79 | 1 | 59 | 176 | 134 | 250 | 4.48e-14 | 71.2 |
Find 53 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCTTGAGTTTCTGCTTT+TGG | 0.171124 | 2.4:-31095959 | None:intergenic |
GTTCCAAGAAAGCACTTCTT+TGG | 0.261253 | 2.4:+31095991 | MS.gene60918:CDS |
CGCTCAAATTGCTCATAATA+AGG | 0.268738 | 2.4:+31092582 | MS.gene60918:CDS |
CTTTATGTTTGGAATGTAAA+TGG | 0.279739 | 2.4:-31095898 | None:intergenic |
GTTCCAAAGAAGTGCTTTCT+TGG | 0.295867 | 2.4:-31095994 | None:intergenic |
TACAGAAACACAGAAGTAAA+TGG | 0.337447 | 2.4:-31093238 | None:intergenic |
TATCAGACCATCTTTATGTT+TGG | 0.349443 | 2.4:-31095909 | None:intergenic |
ATTTCTTCTCTTGCTGCTGC+TGG | 0.351086 | 2.4:+31092544 | MS.gene60918:CDS |
GCTGGAGTTTCAATGGCAAT+TGG | 0.360865 | 2.4:+31093202 | MS.gene60918:CDS |
TTTACTTCTGTGTTTCTGTA+TGG | 0.371099 | 2.4:+31093241 | MS.gene60918:CDS |
AAGTGCTTTCTTGGAACAAA+AGG | 0.375096 | 2.4:-31095985 | None:intergenic |
GTTGTAGCTGGTGGTTTACT+TGG | 0.399977 | 2.4:+31096184 | MS.gene60918:CDS |
ACCATCAGCAACTAACTTTG+AGG | 0.405848 | 2.4:-31096119 | None:intergenic |
AATTGTTGATGATGAAGAAA+TGG | 0.414445 | 2.4:-31092478 | None:intergenic |
CAGGGTGTAAGAAGAGAAGT+AGG | 0.415373 | 2.4:+31095827 | MS.gene60918:intron |
GTGGCTTGTGCAACATTACT+TGG | 0.416239 | 2.4:+31093445 | MS.gene60918:CDS |
GTAAATGGTTGACATCCATT+TGG | 0.417219 | 2.4:-31095883 | None:intergenic |
AGTGAGGGAAATTGAGAAGA+AGG | 0.418480 | 2.4:-31092442 | None:intergenic |
CAACAAACTACTTCTCCAAA+TGG | 0.418502 | 2.4:+31095868 | MS.gene60918:CDS |
GATTGCAGCTGGAGTTTCAA+TGG | 0.421077 | 2.4:+31093195 | MS.gene60918:CDS |
CTGGAGTTTCAATGGCAATT+GGG | 0.423404 | 2.4:+31093203 | MS.gene60918:CDS |
GGTCTTGCAGTTGTGTATGC+TGG | 0.423581 | 2.4:+31093622 | MS.gene60918:CDS |
GCAAATGTATTAGTTAAATC+AGG | 0.423899 | 2.4:+31096031 | MS.gene60918:CDS |
GCTTAGGTTCTGATTGCAGC+TGG | 0.432168 | 2.4:+31093184 | MS.gene60918:intron |
TCCTTTCTACGAAAACTGAA+TGG | 0.434415 | 2.4:-31092502 | None:intergenic |
TCTGATTATGTATGATGCTC+AGG | 0.450552 | 2.4:+31093645 | MS.gene60918:CDS |
CATACAGAAGAGTGTGATGA+TGG | 0.451794 | 2.4:-31093307 | None:intergenic |
TTTGGTGGATTGGATGATCC+AGG | 0.472553 | 2.4:-31095941 | None:intergenic |
ATCAAGGCTCTTATTCAAGC+TGG | 0.483515 | 2.4:+31093277 | MS.gene60918:CDS |
CTGAATTATCTTACCTCTCA+AGG | 0.488483 | 2.4:-31093468 | None:intergenic |
TGGCAAAGAGTTTGATATCA+AGG | 0.498368 | 2.4:+31093261 | MS.gene60918:CDS |
TTACATTCCAAACATAAAGA+TGG | 0.499115 | 2.4:+31095902 | MS.gene60918:CDS |
TGGATTTCTTTGTTTGAGTG+AGG | 0.504915 | 2.4:-31092458 | None:intergenic |
AGCAAGAGAAGAAATTCTAA+AGG | 0.529822 | 2.4:-31092536 | None:intergenic |
ACATTTGCATTAGCTTGTTG+TGG | 0.529942 | 2.4:-31096016 | None:intergenic |
AGTGCTTTCTTGGAACAAAA+GGG | 0.539067 | 2.4:-31095984 | None:intergenic |
GGATTTCTTTGTTTGAGTGA+GGG | 0.539654 | 2.4:-31092457 | None:intergenic |
CAACATTACTTGGCCTTGAG+AGG | 0.541258 | 2.4:+31093455 | MS.gene60918:CDS |
ACCTCAAAGTTAGTTGCTGA+TGG | 0.541385 | 2.4:+31096118 | MS.gene60918:CDS |
GAGAAGTAGGGATTCATGCT+AGG | 0.554119 | 2.4:+31095840 | MS.gene60918:CDS |
CAAAAGCAGAAACTCAAGAA+AGG | 0.564432 | 2.4:+31095960 | MS.gene60918:CDS |
TGCATCTTCTAAGAAATCAG+AGG | 0.571365 | 2.4:-31096089 | None:intergenic |
AGGGTGTAAGAAGAGAAGTA+GGG | 0.572177 | 2.4:+31095828 | MS.gene60918:intron |
AAGGCTCTTATTCAAGCTGG+AGG | 0.574041 | 2.4:+31093280 | MS.gene60918:CDS |
ATTGTAGCTCCTCGTCACAT+TGG | 0.583988 | 2.4:-31096066 | None:intergenic |
CTGCCATTAAAAGAATCTGT+TGG | 0.586554 | 2.4:+31096145 | MS.gene60918:CDS |
ACTGAGGTTGAAGTTGTAGC+TGG | 0.595839 | 2.4:+31096172 | MS.gene60918:CDS |
CAAAATAAGCCAATGTGACG+AGG | 0.599512 | 2.4:+31096057 | MS.gene60918:CDS |
ATACAGAAGAGTGTGATGAT+GGG | 0.621467 | 2.4:-31093306 | None:intergenic |
AGGCTCTTATTCAAGCTGGA+GGG | 0.631515 | 2.4:+31093281 | MS.gene60918:CDS |
GAGGTTGAAGTTGTAGCTGG+TGG | 0.638885 | 2.4:+31096175 | MS.gene60918:CDS |
GGTCTGATAAACTCTCAACC+TGG | 0.642727 | 2.4:+31095923 | MS.gene60918:CDS |
AGAATCTGTTGGTCATACTG+AGG | 0.680148 | 2.4:+31096156 | MS.gene60918:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTAGATTATTAATTC+AGG | + | chr2.4:31094503-31094522 | MS.gene60918:intron | 10.0% |
!! | AAACTAAATAACATGAAAAA+TGG | - | chr2.4:31093691-31093710 | None:intergenic | 15.0% |
!! | AACTAAATAACATGAAAAAT+GGG | - | chr2.4:31093690-31093709 | None:intergenic | 15.0% |
!! | CAACAAAACAATATAAAATT+TGG | - | chr2.4:31093116-31093135 | None:intergenic | 15.0% |
!!! | CCTTATAATGTTTTAAAAAT+CGG | - | chr2.4:31095655-31095674 | None:intergenic | 15.0% |
!!! | CGATTTTTAAAACATTATAA+GGG | + | chr2.4:31095653-31095672 | MS.gene60918:intron | 15.0% |
!!! | CTTATAATGTTTTAAAAATC+GGG | - | chr2.4:31095654-31095673 | None:intergenic | 15.0% |
!!! | TAGTTGTTTAAATTTTCTTT+TGG | + | chr2.4:31093412-31093431 | MS.gene60918:intron | 15.0% |
!!! | TGATTTTCTCAAATAATTAT+TGG | + | chr2.4:31092800-31092819 | MS.gene60918:intron | 15.0% |
!! | AAAAACAAGTGATACAAAAA+TGG | - | chr2.4:31092612-31092631 | None:intergenic | 20.0% |
!! | AAAACAAGTGATACAAAAAT+GGG | - | chr2.4:31092611-31092630 | None:intergenic | 20.0% |
!! | AATATATCCTCTAAGTATAA+AGG | - | chr2.4:31094731-31094750 | None:intergenic | 20.0% |
!! | AATGTTCTTAAAAGCTTAAA+AGG | + | chr2.4:31094635-31094654 | MS.gene60918:intron | 20.0% |
!! | ATAAGCTGAAAATAGTTTAT+GGG | - | chr2.4:31095084-31095103 | None:intergenic | 20.0% |
!! | ATATATTTCAAAGTGAACAT+TGG | - | chr2.4:31094207-31094226 | None:intergenic | 20.0% |
!! | ATTGATCAATGAAGATAATA+AGG | + | chr2.4:31094137-31094156 | MS.gene60918:intron | 20.0% |
!! | GTTATTATTAGTAAATAAGC+AGG | + | chr2.4:31093908-31093927 | MS.gene60918:intron | 20.0% |
!! | TATATTTCAAAGTGAACATT+GGG | - | chr2.4:31094206-31094225 | None:intergenic | 20.0% |
!! | TATGATATTGTTATGTAACT+CGG | - | chr2.4:31094255-31094274 | None:intergenic | 20.0% |
!! | TGAAAAATGTGTTTATAAGT+GGG | + | chr2.4:31093038-31093057 | MS.gene60918:intron | 20.0% |
!! | TTCTATAAACAGAAATTACA+AGG | - | chr2.4:31095736-31095755 | None:intergenic | 20.0% |
!!! | ATTAAGAAAGTCTTTAAAGA+GGG | + | chr2.4:31094560-31094579 | MS.gene60918:intron | 20.0% |
!!! | CCGATTTTTAAAACATTATA+AGG | + | chr2.4:31095652-31095671 | MS.gene60918:intron | 20.0% |
!!! | GTTTAAATTTTCTTTTGGAT+AGG | + | chr2.4:31093417-31093436 | MS.gene60918:intron | 20.0% |
!!! | TATTTACTTATTTCTTGTGA+AGG | + | chr2.4:31094832-31094851 | MS.gene60918:intron | 20.0% |
!!! | TTTGTGATATTTTTTTGCTT+AGG | + | chr2.4:31093168-31093187 | MS.gene60918:intron | 20.0% |
! | AAAAGAAAAGTTGTCTTCAA+TGG | - | chr2.4:31094921-31094940 | None:intergenic | 25.0% |
! | AAAATGACAGAATTTAACCA+AGG | + | chr2.4:31094066-31094085 | MS.gene60918:intron | 25.0% |
! | AAACTTAATGAAGGAATCTT+AGG | + | chr2.4:31093781-31093800 | MS.gene60918:intron | 25.0% |
! | ATCAATGATCAAACTATTTG+TGG | + | chr2.4:31093863-31093882 | MS.gene60918:intron | 25.0% |
! | ATTTACTAATAATAACACCG+TGG | - | chr2.4:31093904-31093923 | None:intergenic | 25.0% |
! | CTGAAAAATGTGTTTATAAG+TGG | + | chr2.4:31093037-31093056 | MS.gene60918:intron | 25.0% |
! | GAAAAATGTGTTTATAAGTG+GGG | + | chr2.4:31093039-31093058 | MS.gene60918:intron | 25.0% |
! | GATAAGCTGAAAATAGTTTA+TGG | - | chr2.4:31095085-31095104 | None:intergenic | 25.0% |
! | GCAAATGTATTAGTTAAATC+AGG | + | chr2.4:31096031-31096050 | MS.gene60918:CDS | 25.0% |
! | GGTAAATCATTTCTAATAAC+CGG | + | chr2.4:31094016-31094035 | MS.gene60918:intron | 25.0% |
! | GTGTGTAGTAAACAATAAAA+GGG | - | chr2.4:31094807-31094826 | None:intergenic | 25.0% |
! | TCAAATAAGTCAATCAAAAG+AGG | - | chr2.4:31094994-31095013 | None:intergenic | 25.0% |
! | TGTGTGTAGTAAACAATAAA+AGG | - | chr2.4:31094808-31094827 | None:intergenic | 25.0% |
! | TGTTTATTATACAAATGCAG+AGG | + | chr2.4:31093580-31093599 | MS.gene60918:intron | 25.0% |
! | TTAAAGACTTTCTTAATCTG+AGG | - | chr2.4:31094557-31094576 | None:intergenic | 25.0% |
! | TTACATTCCAAACATAAAGA+TGG | + | chr2.4:31095902-31095921 | MS.gene60918:CDS | 25.0% |
!! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr2.4:31095680-31095699 | MS.gene60918:intron | 25.0% |
!! | CTTTATGTTTGGAATGTAAA+TGG | - | chr2.4:31095901-31095920 | None:intergenic | 25.0% |
!! | GATTAAGAAAGTCTTTAAAG+AGG | + | chr2.4:31094559-31094578 | MS.gene60918:intron | 25.0% |
!! | TCAAATAATTATTGGTAACC+CGG | + | chr2.4:31092808-31092827 | MS.gene60918:intron | 25.0% |
!! | TTAAGTTGTTTATCCAAACA+GGG | + | chr2.4:31095681-31095700 | MS.gene60918:intron | 25.0% |
!! | TTTTGTAGATAGTATAACTG+AGG | - | chr2.4:31095707-31095726 | None:intergenic | 25.0% |
!!! | AATTGTTGATGATGAAGAAA+TGG | - | chr2.4:31092481-31092500 | None:intergenic | 25.0% |
!!! | ATAATGTTTTAAAAATCGGG+AGG | - | chr2.4:31095651-31095670 | None:intergenic | 25.0% |
!!! | TGTTACTTTTTTCACGTTAA+TGG | + | chr2.4:31095431-31095450 | MS.gene60918:intron | 25.0% |
AAAAGCTTAAAAGGCTTCAA+CGG | + | chr2.4:31094644-31094663 | MS.gene60918:intron | 30.0% | |
AAAATCGATCTATACGATGA+GGG | - | chr2.4:31093071-31093090 | None:intergenic | 30.0% | |
AATAATAACACCGTGGTAAT+TGG | - | chr2.4:31093897-31093916 | None:intergenic | 30.0% | |
ACTATGATTTCTATACCGTA+AGG | - | chr2.4:31094698-31094717 | None:intergenic | 30.0% | |
AGATGAAGAAAACTGAAACA+AGG | - | chr2.4:31095237-31095256 | None:intergenic | 30.0% | |
AGCAAGAGAAGAAATTCTAA+AGG | - | chr2.4:31092539-31092558 | None:intergenic | 30.0% | |
AGGTTCTACAAAGAAAATAG+TGG | + | chr2.4:31094359-31094378 | MS.gene60918:intron | 30.0% | |
AGTAAAAGAAACTCGCTATA+TGG | - | chr2.4:31095320-31095339 | None:intergenic | 30.0% | |
AGTCTCATAAGTACTTATGT+CGG | - | chr2.4:31095026-31095045 | None:intergenic | 30.0% | |
ATATGATATCCTATGAAGCA+CGG | - | chr2.4:31092854-31092873 | None:intergenic | 30.0% | |
ATCGTAAACATAGTGAATGA+AGG | + | chr2.4:31094339-31094358 | MS.gene60918:intron | 30.0% | |
CAATTGCAGATAAAGAAGAA+TGG | - | chr2.4:31095297-31095316 | None:intergenic | 30.0% | |
CTATGATTTCTATACCGTAA+GGG | - | chr2.4:31094697-31094716 | None:intergenic | 30.0% | |
GAAATGAAAGTAGGATTTAC+TGG | - | chr2.4:31093349-31093368 | None:intergenic | 30.0% | |
GACTATGTCAAACTTAATGA+AGG | + | chr2.4:31093772-31093791 | MS.gene60918:intron | 30.0% | |
GAGTCTATCAAATATTCGTT+AGG | + | chr2.4:31092916-31092935 | MS.gene60918:intron | 30.0% | |
GTATGAATATCCCTATTAGT+CGG | + | chr2.4:31095579-31095598 | MS.gene60918:intron | 30.0% | |
TACAAACTTTATCTCAGACA+TGG | + | chr2.4:31094421-31094440 | MS.gene60918:intron | 30.0% | |
TACAGAAACACAGAAGTAAA+TGG | - | chr2.4:31093241-31093260 | None:intergenic | 30.0% | |
TACCACAGATGAAAACTTAT+TGG | + | chr2.4:31094952-31094971 | MS.gene60918:intron | 30.0% | |
TATCAGACCATCTTTATGTT+TGG | - | chr2.4:31095912-31095931 | None:intergenic | 30.0% | |
TCAATGAAGATAATAAGGAG+TGG | + | chr2.4:31094142-31094161 | MS.gene60918:intron | 30.0% | |
TCATAGTGAGGATAATTACA+GGG | - | chr2.4:31094887-31094906 | None:intergenic | 30.0% | |
TCATTCACTATGTTTACGAT+AGG | - | chr2.4:31094339-31094358 | None:intergenic | 30.0% | |
TCCTCTAAGTATAAAGGATA+TGG | - | chr2.4:31094725-31094744 | None:intergenic | 30.0% | |
TGTATGAAATGGTATGTTTC+TGG | + | chr2.4:31093980-31093999 | MS.gene60918:intron | 30.0% | |
TTTATGTCTCTGCAAATCTT+GGG | + | chr2.4:31092629-31092648 | MS.gene60918:intron | 30.0% | |
! | AAAGTAGGATTTACTGGTTA+AGG | - | chr2.4:31093343-31093362 | None:intergenic | 30.0% |
! | AAGTAGGATTTACTGGTTAA+GGG | - | chr2.4:31093342-31093361 | None:intergenic | 30.0% |
! | CAAATAATTATTGGTAACCC+GGG | + | chr2.4:31092809-31092828 | MS.gene60918:intron | 30.0% |
! | GTTGTTTCATTTGCTGAATT+GGG | + | chr2.4:31093132-31093151 | MS.gene60918:intron | 30.0% |
! | TACCAATAAGTTTTCATCTG+TGG | - | chr2.4:31094957-31094976 | None:intergenic | 30.0% |
! | TGACCAACAGATTCTTTTAA+TGG | - | chr2.4:31096151-31096170 | None:intergenic | 30.0% |
! | TTTACTTCTGTGTTTCTGTA+TGG | + | chr2.4:31093241-31093260 | MS.gene60918:CDS | 30.0% |
! | TTTATCTCAGACATGGATTA+TGG | + | chr2.4:31094428-31094447 | MS.gene60918:intron | 30.0% |
! | TTTTATGTCTCTGCAAATCT+TGG | + | chr2.4:31092628-31092647 | MS.gene60918:intron | 30.0% |
!! | ACGTTTTTGAGAACATGTTT+AGG | - | chr2.4:31092879-31092898 | None:intergenic | 30.0% |
!! | ATCGTATAGATCGATTTTGT+AGG | + | chr2.4:31093073-31093092 | MS.gene60918:intron | 30.0% |
!! | TGTTGTTTCATTTGCTGAAT+TGG | + | chr2.4:31093131-31093150 | MS.gene60918:intron | 30.0% |
!!! | CTCAAAAACGTGTTTTAAGA+TGG | + | chr2.4:31092888-31092907 | MS.gene60918:intron | 30.0% |
!!! | GTTTACTTGGATTTTTGGTT+GGG | + | chr2.4:31096197-31096216 | MS.gene60918:CDS | 30.0% |
AAAGCTTAAAAGGCTTCAAC+GGG | + | chr2.4:31094645-31094664 | MS.gene60918:intron | 35.0% | |
AAGTGCTTTCTTGGAACAAA+AGG | - | chr2.4:31095988-31096007 | None:intergenic | 35.0% | |
ACAACTGCAAGACCAAAAAT+GGG | - | chr2.4:31093616-31093635 | None:intergenic | 35.0% | |
ACTTTCTTAATCTGAGGACT+CGG | - | chr2.4:31094551-31094570 | None:intergenic | 35.0% | |
AGACTATATCTCATCCAATG+TGG | - | chr2.4:31093019-31093038 | None:intergenic | 35.0% | |
AGCAAAGATACTCGATATCT+TGG | - | chr2.4:31093828-31093847 | None:intergenic | 35.0% | |
AGTGCTTTCTTGGAACAAAA+GGG | - | chr2.4:31095987-31096006 | None:intergenic | 35.0% | |
ATATTCATACACACACGCAT+AGG | - | chr2.4:31095569-31095588 | None:intergenic | 35.0% | |
ATCACTGAATATGACCTGTT+TGG | + | chr2.4:31095772-31095791 | MS.gene60918:intron | 35.0% | |
ATCGTAAGATCCGACTAATA+GGG | - | chr2.4:31095592-31095611 | None:intergenic | 35.0% | |
CAAAAGCAGAAACTCAAGAA+AGG | + | chr2.4:31095960-31095979 | MS.gene60918:CDS | 35.0% | |
CAAAATCGATCTATACGATG+AGG | - | chr2.4:31093072-31093091 | None:intergenic | 35.0% | |
CAACAAACTACTTCTCCAAA+TGG | + | chr2.4:31095868-31095887 | MS.gene60918:CDS | 35.0% | |
CGCTCAAATTGCTCATAATA+AGG | + | chr2.4:31092582-31092601 | MS.gene60918:CDS | 35.0% | |
CTGAATTATCTTACCTCTCA+AGG | - | chr2.4:31093471-31093490 | None:intergenic | 35.0% | |
CTGCCATTAAAAGAATCTGT+TGG | + | chr2.4:31096145-31096164 | MS.gene60918:CDS | 35.0% | |
GACATAAGTACTTATGAGAC+TGG | + | chr2.4:31095025-31095044 | MS.gene60918:intron | 35.0% | |
GCCATATCCTTTATACTTAG+AGG | + | chr2.4:31094721-31094740 | MS.gene60918:intron | 35.0% | |
GGAATTCATACCAATTACCA+CGG | + | chr2.4:31093884-31093903 | MS.gene60918:intron | 35.0% | |
GGCATAGATGAAATGAAAGT+AGG | - | chr2.4:31093358-31093377 | None:intergenic | 35.0% | |
GTAAATGGTTGACATCCATT+TGG | - | chr2.4:31095886-31095905 | None:intergenic | 35.0% | |
GTCATAGTGAGGATAATTAC+AGG | - | chr2.4:31094888-31094907 | None:intergenic | 35.0% | |
GTCTTAATTGTAAGCCAAAC+AGG | - | chr2.4:31095789-31095808 | None:intergenic | 35.0% | |
GTGAAACAACACTATTCAAG+TGG | - | chr2.4:31093379-31093398 | None:intergenic | 35.0% | |
TACAGTTGTAGCCTATAGAA+AGG | - | chr2.4:31094298-31094317 | None:intergenic | 35.0% | |
TCATAAGTACTTATGTCGGT+AGG | - | chr2.4:31095022-31095041 | None:intergenic | 35.0% | |
TCCTTTCTACGAAAACTGAA+TGG | - | chr2.4:31092505-31092524 | None:intergenic | 35.0% | |
TCTGATTATGTATGATGCTC+AGG | + | chr2.4:31093645-31093664 | MS.gene60918:CDS | 35.0% | |
TGGCAAAGAGTTTGATATCA+AGG | + | chr2.4:31093261-31093280 | MS.gene60918:CDS | 35.0% | |
TTAATTCAGGTGCCAAATGA+TGG | + | chr2.4:31094516-31094535 | MS.gene60918:intron | 35.0% | |
TTGACATAGTCTAAGTACAG+CGG | - | chr2.4:31093763-31093782 | None:intergenic | 35.0% | |
! | ATACAGAAGAGTGTGATGAT+GGG | - | chr2.4:31093309-31093328 | None:intergenic | 35.0% |
! | CTTTCTTGAGTTTCTGCTTT+TGG | - | chr2.4:31095962-31095981 | None:intergenic | 35.0% |
! | GACAATGTTTTGTCATAGTG+AGG | - | chr2.4:31094899-31094918 | None:intergenic | 35.0% |
! | GGATTTCTTTGTTTGAGTGA+GGG | - | chr2.4:31092460-31092479 | None:intergenic | 35.0% |
! | TACGATAGGTTGAAATGACA+AGG | - | chr2.4:31094325-31094344 | None:intergenic | 35.0% |
! | TCCATTCAGTTTTCGTAGAA+AGG | + | chr2.4:31092501-31092520 | MS.gene60918:CDS | 35.0% |
! | TGCATCTTCTAAGAAATCAG+AGG | - | chr2.4:31096092-31096111 | None:intergenic | 35.0% |
! | TGGATTTCTTTGTTTGAGTG+AGG | - | chr2.4:31092461-31092480 | None:intergenic | 35.0% |
! | TGGTGGTTTACTTGGATTTT+TGG | + | chr2.4:31096192-31096211 | MS.gene60918:CDS | 35.0% |
! | TGTGATTTCTGTGATTTGCA+GGG | + | chr2.4:31095809-31095828 | MS.gene60918:intron | 35.0% |
!! | AAAATAGTGGATGTCACTTG+GGG | + | chr2.4:31094372-31094391 | MS.gene60918:intron | 35.0% |
!! | ACATTTGCATTAGCTTGTTG+TGG | - | chr2.4:31096019-31096038 | None:intergenic | 35.0% |
!! | AGAAAATAGTGGATGTCACT+TGG | + | chr2.4:31094370-31094389 | MS.gene60918:intron | 35.0% |
!! | GAAAATAGTGGATGTCACTT+GGG | + | chr2.4:31094371-31094390 | MS.gene60918:intron | 35.0% |
!! | TCAGTTATGCTGACTTAGTA+TGG | + | chr2.4:31093487-31093506 | MS.gene60918:intron | 35.0% |
!!! | AGAATGGAAGTATTTTGCCA+TGG | - | chr2.4:31095281-31095300 | None:intergenic | 35.0% |
!!! | ATGTTTTAAAAATCGGGAGG+TGG | - | chr2.4:31095648-31095667 | None:intergenic | 35.0% |
!!! | CTGTCATTTTCTTTTCTCCT+TGG | - | chr2.4:31094056-31094075 | None:intergenic | 35.0% |
!!! | GGTTTACTTGGATTTTTGGT+TGG | + | chr2.4:31096196-31096215 | MS.gene60918:CDS | 35.0% |
ACCATCAGCAACTAACTTTG+AGG | - | chr2.4:31096122-31096141 | None:intergenic | 40.0% | |
ACCTCAAAGTTAGTTGCTGA+TGG | + | chr2.4:31096118-31096137 | MS.gene60918:CDS | 40.0% | |
AGAATCTGTTGGTCATACTG+AGG | + | chr2.4:31096156-31096175 | MS.gene60918:CDS | 40.0% | |
AGGGTGTAAGAAGAGAAGTA+GGG | + | chr2.4:31095828-31095847 | MS.gene60918:intron | 40.0% | |
AGTAACTCATACAGCAACAG+TGG | - | chr2.4:31095405-31095424 | None:intergenic | 40.0% | |
AGTGAGGGAAATTGAGAAGA+AGG | - | chr2.4:31092445-31092464 | None:intergenic | 40.0% | |
ATACACACACACGCACAAAA+AGG | - | chr2.4:31093965-31093984 | None:intergenic | 40.0% | |
ATCAAGGCTCTTATTCAAGC+TGG | + | chr2.4:31093277-31093296 | MS.gene60918:CDS | 40.0% | |
ATGTAGACGACGCTAACTAA+TGG | + | chr2.4:31094464-31094483 | MS.gene60918:intron | 40.0% | |
CAAAATAAGCCAATGTGACG+AGG | + | chr2.4:31096057-31096076 | MS.gene60918:CDS | 40.0% | |
CACAACTGCAAGACCAAAAA+TGG | - | chr2.4:31093617-31093636 | None:intergenic | 40.0% | |
CCTATAGAAAGGAGACCAAA+AGG | - | chr2.4:31094287-31094306 | None:intergenic | 40.0% | |
CGGTCTATCTTTCCATCATT+TGG | - | chr2.4:31094531-31094550 | None:intergenic | 40.0% | |
CTATACCGTAAGGGTTGTTT+CGG | - | chr2.4:31094688-31094707 | None:intergenic | 40.0% | |
CTCTGTTTGACCAATGAACA+TGG | - | chr2.4:31094107-31094126 | None:intergenic | 40.0% | |
CTGGAGTTTCAATGGCAATT+GGG | + | chr2.4:31093203-31093222 | MS.gene60918:CDS | 40.0% | |
GAATCCGAGCATGGTTAAAA+GGG | - | chr2.4:31093741-31093760 | None:intergenic | 40.0% | |
GATCGTAAGATCCGACTAAT+AGG | - | chr2.4:31095593-31095612 | None:intergenic | 40.0% | |
GGCACATCAAAAGACTGATA+CGG | - | chr2.4:31093720-31093739 | None:intergenic | 40.0% | |
GTACGTTGTGCTCATCTAAT+TGG | - | chr2.4:31092710-31092729 | None:intergenic | 40.0% | |
TGTCTGCACTTATGACGTTA+TGG | + | chr2.4:31095479-31095498 | MS.gene60918:intron | 40.0% | |
TTGAATGTAATGACATGCGC+CGG | - | chr2.4:31092768-31092787 | None:intergenic | 40.0% | |
TTTGCCATGGACAGTATGTA+TGG | - | chr2.4:31095268-31095287 | None:intergenic | 40.0% | |
! | ACGCCTTTGATCAAAAGTGT+CGG | - | chr2.4:31092732-31092751 | None:intergenic | 40.0% |
! | ATCATATCCGACACTCCTTT+TGG | + | chr2.4:31094269-31094288 | MS.gene60918:intron | 40.0% |
! | CATACAGAAGAGTGTGATGA+TGG | - | chr2.4:31093310-31093329 | None:intergenic | 40.0% |
! | CCTTTTGGTCTCCTTTCTAT+AGG | + | chr2.4:31094284-31094303 | MS.gene60918:intron | 40.0% |
! | CTGTGATTTCTGTGATTTGC+AGG | + | chr2.4:31095808-31095827 | MS.gene60918:intron | 40.0% |
! | TATACCGTAAGGGTTGTTTC+GGG | - | chr2.4:31094687-31094706 | None:intergenic | 40.0% |
! | TTCTTTTGGATAGGCAACAG+TGG | + | chr2.4:31093426-31093445 | MS.gene60918:intron | 40.0% |
!! | AGTTTCTGCTTTTGGTGGAT+TGG | - | chr2.4:31095954-31095973 | None:intergenic | 40.0% |
!! | CTTGGTTTTTGTCACATGTC+CGG | - | chr2.4:31094038-31094057 | None:intergenic | 40.0% |
!! | GTACCGACACTTTTGATCAA+AGG | + | chr2.4:31092726-31092745 | MS.gene60918:intron | 40.0% |
!! | GTTCCAAAGAAGTGCTTTCT+TGG | - | chr2.4:31095997-31096016 | None:intergenic | 40.0% |
!! | GTTCCAAGAAAGCACTTCTT+TGG | + | chr2.4:31095991-31096010 | MS.gene60918:CDS | 40.0% |
!! | GTTGTTTCGGGCTTTTCAAT+AGG | - | chr2.4:31094675-31094694 | None:intergenic | 40.0% |
!! | GTTTCTGGAACTGTGAATGT+GGG | + | chr2.4:31093995-31094014 | MS.gene60918:intron | 40.0% |
!! | TCTTGAGTTTCTGCTTTTGG+TGG | - | chr2.4:31095959-31095978 | None:intergenic | 40.0% |
!! | TGTTTCTGGAACTGTGAATG+TGG | + | chr2.4:31093994-31094013 | MS.gene60918:intron | 40.0% |
!!! | GGCTACTTTTACACACTATC+AGG | + | chr2.4:31092937-31092956 | MS.gene60918:intron | 40.0% |
AAAGCCCGAAACAACCCTTA+CGG | + | chr2.4:31094680-31094699 | MS.gene60918:intron | 45.0% | |
AAGGCTCTTATTCAAGCTGG+AGG | + | chr2.4:31093280-31093299 | MS.gene60918:CDS | 45.0% | |
ACACGCCATATGTTTAGTCG+TGG | + | chr2.4:31092971-31092990 | MS.gene60918:intron | 45.0% | |
ACAGACACATAACACAACCC+GGG | - | chr2.4:31092829-31092848 | None:intergenic | 45.0% | |
ACTGAGGTTGAAGTTGTAGC+TGG | + | chr2.4:31096172-31096191 | MS.gene60918:CDS | 45.0% | |
AGGCTCTTATTCAAGCTGGA+GGG | + | chr2.4:31093281-31093300 | MS.gene60918:CDS | 45.0% | |
AGTATAACTGAGGCCCTGTT+TGG | - | chr2.4:31095697-31095716 | None:intergenic | 45.0% | |
AGTGTGTTGAGAGTCCACAT+TGG | + | chr2.4:31093002-31093021 | MS.gene60918:intron | 45.0% | |
ATTGTAGCTCCTCGTCACAT+TGG | - | chr2.4:31096069-31096088 | None:intergenic | 45.0% | |
ATTTCTTCTCTTGCTGCTGC+TGG | + | chr2.4:31092544-31092563 | MS.gene60918:CDS | 45.0% | |
CACAGACACATAACACAACC+CGG | - | chr2.4:31092830-31092849 | None:intergenic | 45.0% | |
CACGCCATATGTTTAGTCGT+GGG | + | chr2.4:31092972-31092991 | MS.gene60918:intron | 45.0% | |
CAGGGTGTAAGAAGAGAAGT+AGG | + | chr2.4:31095827-31095846 | MS.gene60918:intron | 45.0% | |
CCAATGAACATGGTCACTGT+AGG | - | chr2.4:31094097-31094116 | None:intergenic | 45.0% | |
CCTACAGTGACCATGTTCAT+TGG | + | chr2.4:31094094-31094113 | MS.gene60918:intron | 45.0% | |
CGGACATGTGACAAAAACCA+AGG | + | chr2.4:31094036-31094055 | MS.gene60918:intron | 45.0% | |
GACCAAAAATGGGATCTGAC+AGG | - | chr2.4:31093606-31093625 | None:intergenic | 45.0% | |
GAGAAGTAGGGATTCATGCT+AGG | + | chr2.4:31095840-31095859 | MS.gene60918:CDS | 45.0% | |
GATTGCAGCTGGAGTTTCAA+TGG | + | chr2.4:31093195-31093214 | MS.gene60918:CDS | 45.0% | |
GCAGATGCATATCTATCTGC+AGG | - | chr2.4:31094608-31094627 | None:intergenic | 45.0% | |
GCTGGAGTTTCAATGGCAAT+TGG | + | chr2.4:31093202-31093221 | MS.gene60918:CDS | 45.0% | |
GGAATCCGAGCATGGTTAAA+AGG | - | chr2.4:31093742-31093761 | None:intergenic | 45.0% | |
GGTCACTGTAGGTTAAACCT+TGG | - | chr2.4:31094086-31094105 | None:intergenic | 45.0% | |
GGTCTGATAAACTCTCAACC+TGG | + | chr2.4:31095923-31095942 | MS.gene60918:CDS | 45.0% | |
GGTTGAAAGATCGTAACTCG+AGG | - | chr2.4:31095627-31095646 | None:intergenic | 45.0% | |
GTAACTCGAGGATCATAGCA+TGG | - | chr2.4:31095615-31095634 | None:intergenic | 45.0% | |
GTGCGTGTGTGTGTATGAAA+TGG | + | chr2.4:31093969-31093988 | MS.gene60918:intron | 45.0% | |
GTTGTAGCTGGTGGTTTACT+TGG | + | chr2.4:31096184-31096203 | MS.gene60918:CDS | 45.0% | |
TGAGCCATACATACTGTCCA+TGG | + | chr2.4:31095261-31095280 | MS.gene60918:intron | 45.0% | |
TGGACAGTATGTATGGCTCA+AGG | - | chr2.4:31095261-31095280 | None:intergenic | 45.0% | |
! | AAGGAGACCAAAAGGAGTGT+CGG | - | chr2.4:31094279-31094298 | None:intergenic | 45.0% |
! | GACACTTTTGATCAAAGGCG+TGG | + | chr2.4:31092731-31092750 | MS.gene60918:intron | 45.0% |
! | GTGGCTTGTGCAACATTACT+TGG | + | chr2.4:31093445-31093464 | MS.gene60918:CDS | 45.0% |
! | TCACTTGGGGTTTTGCATGT+GGG | + | chr2.4:31094385-31094404 | MS.gene60918:intron | 45.0% |
! | TGTGCCCTTTTAACCATGCT+CGG | + | chr2.4:31093734-31093753 | MS.gene60918:intron | 45.0% |
!! | CAACATTACTTGGCCTTGAG+AGG | + | chr2.4:31093455-31093474 | MS.gene60918:CDS | 45.0% |
!! | TTTGGTGGATTGGATGATCC+AGG | - | chr2.4:31095944-31095963 | None:intergenic | 45.0% |
!!! | ACTTGGATTTTTGGTTGGGC+TGG | + | chr2.4:31096201-31096220 | MS.gene60918:CDS | 45.0% |
AGGCGTGGCCATTATATGAC+CGG | + | chr2.4:31092746-31092765 | MS.gene60918:intron | 50.0% | |
CACGCCCACGACTAAACATA+TGG | - | chr2.4:31092979-31092998 | None:intergenic | 50.0% | |
GAGGTTGAAGTTGTAGCTGG+TGG | + | chr2.4:31096175-31096194 | MS.gene60918:CDS | 50.0% | |
GGTCTTGCAGTTGTGTATGC+TGG | + | chr2.4:31093622-31093641 | MS.gene60918:CDS | 50.0% | |
TGTCTGTGTCCGTGCTTCAT+AGG | + | chr2.4:31092842-31092861 | MS.gene60918:intron | 50.0% | |
TGTTTCCAGAGACTGCCACT+GGG | + | chr2.4:31095370-31095389 | MS.gene60918:intron | 50.0% | |
TTGTTTCCAGAGACTGCCAC+TGG | + | chr2.4:31095369-31095388 | MS.gene60918:intron | 50.0% | |
! | GACATGCGCCGGTCATATAA+TGG | - | chr2.4:31092757-31092776 | None:intergenic | 50.0% |
! | GCTTAGGTTCTGATTGCAGC+TGG | + | chr2.4:31093184-31093203 | MS.gene60918:intron | 50.0% |
! | GGCCTGTCAGATCCCATTTT+TGG | + | chr2.4:31093601-31093620 | MS.gene60918:CDS | 50.0% |
! | GTCACTTGGGGTTTTGCATG+TGG | + | chr2.4:31094384-31094403 | MS.gene60918:intron | 50.0% |
! | GTGGCAGTCTCTGGAAACAA+AGG | - | chr2.4:31095369-31095388 | None:intergenic | 50.0% |
AGTACAGCGGAATCCGAGCA+TGG | - | chr2.4:31093750-31093769 | None:intergenic | 55.0% | |
CAGTGGTTAAACACGCCCAG+TGG | - | chr2.4:31095388-31095407 | None:intergenic | 55.0% | |
ACACGCCCAGTGGCAGTCTC+TGG | - | chr2.4:31095378-31095397 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 31092406 | 31096243 | 31092406 | ID=MS.gene60918 |
chr2.4 | mRNA | 31092406 | 31096243 | 31092406 | ID=MS.gene60918.t1;Parent=MS.gene60918 |
chr2.4 | exon | 31092406 | 31092603 | 31092406 | ID=MS.gene60918.t1.exon1;Parent=MS.gene60918.t1 |
chr2.4 | CDS | 31092406 | 31092603 | 31092406 | ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1 |
chr2.4 | exon | 31093190 | 31093324 | 31093190 | ID=MS.gene60918.t1.exon2;Parent=MS.gene60918.t1 |
chr2.4 | CDS | 31093190 | 31093324 | 31093190 | ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1 |
chr2.4 | exon | 31093439 | 31093476 | 31093439 | ID=MS.gene60918.t1.exon3;Parent=MS.gene60918.t1 |
chr2.4 | CDS | 31093439 | 31093476 | 31093439 | ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1 |
chr2.4 | exon | 31093600 | 31093666 | 31093600 | ID=MS.gene60918.t1.exon4;Parent=MS.gene60918.t1 |
chr2.4 | CDS | 31093600 | 31093666 | 31093600 | ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1 |
chr2.4 | exon | 31095830 | 31096243 | 31095830 | ID=MS.gene60918.t1.exon5;Parent=MS.gene60918.t1 |
chr2.4 | CDS | 31095830 | 31096243 | 31095830 | ID=cds.MS.gene60918.t1;Parent=MS.gene60918.t1 |
Gene Sequence |
Protein sequence |