Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62943.t1 | XP_013468491.1 | 100 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 5.60E-70 | 273.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62943.t1 | Q58CU0 | 44.4 | 90 | 48 | 1 | 16 | 103 | 19 | 108 | 7.1e-13 | 75.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62943.t1 | I3SAI9 | 100.0 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 4.1e-70 | 273.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene62943 | 0.808506 | 2.99E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene62943 | 0.803873 | 2.83E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene62943 | 0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene62943 | 0.829363 | 5.37E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene62943 | 0.841705 | 4.04E-58 | -1.69E-46 |
| MS.gene051063 | MS.gene62943 | 0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene62943 | 0.802 | 6.90E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene62943 | 0.802631 | 5.12E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene62943 | 0.816809 | 4.57E-52 | -1.69E-46 |
| MS.gene051756 | MS.gene62943 | 0.836575 | 8.63E-57 | -1.69E-46 |
| MS.gene051757 | MS.gene62943 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene62943 | 0.825264 | 5.15E-54 | -1.69E-46 |
| MS.gene052335 | MS.gene62943 | 0.816833 | 4.51E-52 | -1.69E-46 |
| MS.gene052527 | MS.gene62943 | 0.805851 | 1.09E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene62943 | -0.809186 | 2.14E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene62943 | 0.800317 | 1.53E-48 | -1.69E-46 |
| MS.gene053677 | MS.gene62943 | 0.815872 | 7.40E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene62943 | 0.824493 | 7.84E-54 | -1.69E-46 |
| MS.gene054250 | MS.gene62943 | 0.802835 | 4.65E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene62943 | 0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene62943 | 0.804363 | 2.24E-49 | -1.69E-46 |
| MS.gene056764 | MS.gene62943 | 0.816291 | 5.96E-52 | -1.69E-46 |
| MS.gene056830 | MS.gene62943 | -0.824846 | 6.47E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene62943 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene62943 | 0.832949 | 7.06E-56 | -1.69E-46 |
| MS.gene057234 | MS.gene62943 | 0.808923 | 2.44E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene62943 | 0.804152 | 2.48E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene62943 | 0.826618 | 2.46E-54 | -1.69E-46 |
| MS.gene058074 | MS.gene62943 | 0.834961 | 2.21E-56 | -1.69E-46 |
| MS.gene058182 | MS.gene62943 | 0.808803 | 2.59E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene62943 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene62943 | 0.821736 | 3.44E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene62943 | 0.839483 | 1.54E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene62943 | 0.814992 | 1.16E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene62943 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene059719 | MS.gene62943 | 0.805026 | 1.63E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene62943 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene62943 | 0.808822 | 2.56E-50 | -1.69E-46 |
| MS.gene060465 | MS.gene62943 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene62943 | 0.804196 | 2.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62943.t1 | MTR_1g069925 | 100.000 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 8.91e-102 | 288 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62943.t1 | AT4G14385 | 68.531 | 143 | 39 | 2 | 3 | 142 | 2 | 141 | 2.30e-57 | 176 |
| MS.gene62943.t1 | AT4G14385 | 72.807 | 114 | 31 | 0 | 3 | 116 | 2 | 115 | 4.81e-51 | 160 |
| MS.gene62943.t1 | AT4G14385 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 1.55e-41 | 134 |
| MS.gene62943.t1 | AT4G14385 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 1.55e-41 | 134 |
| MS.gene62943.t1 | AT4G14385 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 3.89e-36 | 121 |
| MS.gene62943.t1 | AT4G14385 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 3.89e-36 | 121 |
| MS.gene62943.t1 | AT4G14385 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 3.89e-36 | 121 |
| MS.gene62943.t1 | AT4G14385 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 3.89e-36 | 121 |
| MS.gene62943.t1 | AT4G14385 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 3.89e-36 | 121 |
Find 35 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGAAACAAGTTATTTAC+AGG | 0.281655 | 1.4:-56620563 | MS.gene62943:CDS |
| CTCGACACAGGTTTATGATA+TGG | 0.290750 | 1.4:-56620581 | MS.gene62943:intron |
| ACGAAGCTCTTCATGAAGTT+TGG | 0.303537 | 1.4:+56620997 | None:intergenic |
| CTTGCTCTCTTCGCATCTCT+TGG | 0.327976 | 1.4:+56618562 | None:intergenic |
| ACAGTGTGGCAATGTATTAA+AGG | 0.345831 | 1.4:-56620533 | MS.gene62943:CDS |
| GGCGCACCTCTTCCTTTCTT+CGG | 0.350577 | 1.4:+56618583 | None:intergenic |
| TCAGATGGGAGATCAGATTT+TGG | 0.357334 | 1.4:-56618760 | MS.gene62943:intron |
| GGTGGAACAATTTATGCAAA+TGG | 0.372296 | 1.4:-56618721 | MS.gene62943:CDS |
| AATGTATTAAAGGGATTTGA+AGG | 0.395885 | 1.4:-56620523 | MS.gene62943:CDS |
| TAATGAAAAGAGCCTGTCTT+CGG | 0.428840 | 1.4:+56619797 | None:intergenic |
| TTTGGTCCTGGTCGATCAAA+AGG | 0.448086 | 1.4:-56618742 | MS.gene62943:CDS |
| AATGAAAAGAGCCTGTCTTC+GGG | 0.452201 | 1.4:+56619798 | None:intergenic |
| CAGTGTGGCAATGTATTAAA+GGG | 0.460090 | 1.4:-56620532 | MS.gene62943:CDS |
| ACAAGTTATTTACAGGATCC+TGG | 0.477906 | 1.4:-56620556 | MS.gene62943:CDS |
| GTGGAACAATTTATGCAAAT+GGG | 0.480539 | 1.4:-56618720 | MS.gene62943:CDS |
| GCTTCGTAATATTGAAAAGC+AGG | 0.480561 | 1.4:-56620981 | MS.gene62943:intron |
| CAAGAGATGCGAAGAGAGCA+AGG | 0.508415 | 1.4:-56618561 | MS.gene62943:CDS |
| AATACATTGCCACACTGTCC+AGG | 0.510409 | 1.4:+56620538 | None:intergenic |
| TAGGCAGAAGAGCTTGCAGC+TGG | 0.517903 | 1.4:-56618871 | MS.gene62943:CDS |
| GAAAGTTTCAGCCCGAAGAC+AGG | 0.522864 | 1.4:-56619809 | MS.gene62943:CDS |
| GGTGAACCCTTCAGCAATGT+TGG | 0.540152 | 1.4:-56621041 | MS.gene62943:CDS |
| CAGTGTTCTTTGTTGACGAT+AGG | 0.542807 | 1.4:+56620497 | None:intergenic |
| TTTGGCTCTTCTACTAAGCA+AGG | 0.544435 | 1.4:+56621015 | None:intergenic |
| TATAGGGGTAAACCGAAGAA+AGG | 0.552151 | 1.4:-56618595 | MS.gene62943:intron |
| GAGCTTGCAGCTGGACGAGA+CGG | 0.560192 | 1.4:-56618862 | MS.gene62943:intron |
| AAGGAAGCCAACATTGCTGA+AGG | 0.567280 | 1.4:+56621034 | None:intergenic |
| TCAGAAACACACCGCTGGCG+AGG | 0.588747 | 1.4:+56619764 | None:intergenic |
| ATGTATTAAAGGGATTTGAA+GGG | 0.608853 | 1.4:-56620522 | MS.gene62943:CDS |
| GGTAAACCGAAGAAAGGAAG+AGG | 0.619973 | 1.4:-56618589 | MS.gene62943:CDS |
| ATCTTCAGTGACCTCGCCAG+CGG | 0.629189 | 1.4:-56619775 | MS.gene62943:intron |
| GGTCCTGGTCGATCAAAAGG+TGG | 0.634647 | 1.4:-56618739 | MS.gene62943:CDS |
| AAGAGATGCGAAGAGAGCAA+GGG | 0.657814 | 1.4:-56618560 | MS.gene62943:CDS |
| AGGAAGCCAACATTGCTGAA+GGG | 0.663989 | 1.4:+56621035 | None:intergenic |
| TTACAGGATCCTGGACAGTG+TGG | 0.680227 | 1.4:-56620547 | MS.gene62943:CDS |
| TCCTTGAAAATGGAATCCGA+AGG | 0.698033 | 1.4:-56621172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATATTAATTTTT+AGG | - | chr1.4:56618641-56618660 | MS.gene62943:intron | 0.0% |
| !!! | AATAACTATATATTTTTACA+TGG | + | chr1.4:56619772-56619791 | None:intergenic | 10.0% |
| !!! | AATTATTTTGAATTTTCATT+TGG | - | chr1.4:56618835-56618854 | MS.gene62943:intron | 10.0% |
| !!! | ATTATTTTGAATTTTCATTT+GGG | - | chr1.4:56618836-56618855 | MS.gene62943:intron | 10.0% |
| !! | AATACAATTTAACCTTAAAT+TGG | - | chr1.4:56619064-56619083 | MS.gene62943:intron | 15.0% |
| !! | AATCACAAATCATATTTATT+AGG | - | chr1.4:56619482-56619501 | MS.gene62943:intron | 15.0% |
| !! | ATACAATTTAACCTTAAATT+GGG | - | chr1.4:56619065-56619084 | MS.gene62943:intron | 15.0% |
| !! | GTCATTATTAGAAATAATTA+TGG | - | chr1.4:56620639-56620658 | MS.gene62943:intron | 15.0% |
| !!! | ATATCTTTTTATCTAATTCT+GGG | + | chr1.4:56619999-56620018 | None:intergenic | 15.0% |
| !!! | ATTCTTTTGTAATTTCAATT+TGG | - | chr1.4:56618602-56618621 | MS.gene62943:intron | 15.0% |
| !!! | TATATCTTTTTATCTAATTC+TGG | + | chr1.4:56620000-56620019 | None:intergenic | 15.0% |
| !!! | TTGAATCTATTTTTTTTTGT+TGG | - | chr1.4:56619868-56619887 | MS.gene62943:intron | 15.0% |
| !! | AAAAATCATCATGTTACTAT+AGG | - | chr1.4:56621105-56621124 | MS.gene62943:intron | 20.0% |
| !! | AAAATCATCATGTTACTATA+GGG | - | chr1.4:56621106-56621125 | MS.gene62943:intron | 20.0% |
| !! | CCATAAATGAATAAAAATCA+TGG | + | chr1.4:56619524-56619543 | None:intergenic | 20.0% |
| !! | GTGTTTGAATTAATAAGAAA+AGG | - | chr1.4:56619677-56619696 | MS.gene62943:intron | 20.0% |
| !! | TAAACAGAATTGACAATAAA+AGG | + | chr1.4:56620743-56620762 | None:intergenic | 20.0% |
| !! | TGCGGTTATTAATTTATATT+TGG | + | chr1.4:56620369-56620388 | None:intergenic | 20.0% |
| !!! | AATCTTACTAAGATTTTAGA+TGG | - | chr1.4:56619645-56619664 | MS.gene62943:intron | 20.0% |
| !!! | AATTTTAATCCATTTGAAAC+AGG | - | chr1.4:56620322-56620341 | MS.gene62943:intron | 20.0% |
| !!! | AGTTTTAGCAAATATAAATC+TGG | + | chr1.4:56620570-56620589 | None:intergenic | 20.0% |
| !!! | ATTTTTATTCATTTATGGTC+AGG | - | chr1.4:56619526-56619545 | MS.gene62943:intron | 20.0% |
| !!! | CCATGATTTTTATTCATTTA+TGG | - | chr1.4:56619521-56619540 | MS.gene62943:intron | 20.0% |
| !!! | GATTAAATTTTCAATGCAAT+AGG | - | chr1.4:56619029-56619048 | MS.gene62943:intron | 20.0% |
| !!! | TGTTTCAAATGGATTAAAAT+TGG | + | chr1.4:56620323-56620342 | None:intergenic | 20.0% |
| !!! | TTATATTTGCTAAAACTTAG+AGG | - | chr1.4:56620573-56620592 | MS.gene62943:CDS | 20.0% |
| ! | AAATCATCATGTTACTATAG+GGG | - | chr1.4:56621107-56621126 | MS.gene62943:intron | 25.0% |
| ! | AATCATATTTATTAGGCATC+TGG | - | chr1.4:56619489-56619508 | MS.gene62943:intron | 25.0% |
| ! | AATGTATTAAAGGGATTTGA+AGG | - | chr1.4:56619194-56619213 | MS.gene62943:intron | 25.0% |
| ! | AATTAAATGCTTTACATGAG+TGG | - | chr1.4:56620517-56620536 | MS.gene62943:CDS | 25.0% |
| ! | ATATTTCCATTTATCTCAGA+TGG | - | chr1.4:56620942-56620961 | MS.gene62943:intron | 25.0% |
| ! | ATGTATTAAAGGGATTTGAA+GGG | - | chr1.4:56619195-56619214 | MS.gene62943:intron | 25.0% |
| ! | CATATGATATAATTGAGTCT+AGG | + | chr1.4:56620406-56620425 | None:intergenic | 25.0% |
| ! | GAAGTCATTGAAATGTTTAT+AGG | + | chr1.4:56620887-56620906 | None:intergenic | 25.0% |
| ! | TATGGAAACAAGTTATTTAC+AGG | - | chr1.4:56619154-56619173 | MS.gene62943:intron | 25.0% |
| ! | TATTTCCATTTATCTCAGAT+GGG | - | chr1.4:56620943-56620962 | MS.gene62943:intron | 25.0% |
| ! | TTCAATGCAATAGGATAATT+GGG | - | chr1.4:56619038-56619057 | MS.gene62943:intron | 25.0% |
| ! | TTGACAATAAAAGGCTTAAA+AGG | + | chr1.4:56620734-56620753 | None:intergenic | 25.0% |
| ! | TTGTCAATTCTGTTTAATCA+TGG | - | chr1.4:56620747-56620766 | MS.gene62943:intron | 25.0% |
| ! | TTTCAATGCAATAGGATAAT+TGG | - | chr1.4:56619037-56619056 | MS.gene62943:intron | 25.0% |
| !! | AAAGCATTTAATTTCTCAAC+CGG | + | chr1.4:56620510-56620529 | None:intergenic | 25.0% |
| !! | GATCTTCATCTTTTTATTGT+AGG | - | chr1.4:56620827-56620846 | MS.gene62943:intron | 25.0% |
| !! | TGTTTTATCAACATGAAACT+TGG | + | chr1.4:56620679-56620698 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAATTTTAGCTTC+TGG | - | chr1.4:56618761-56618780 | MS.gene62943:intron | 25.0% |
| !!! | ATTTTTAGGTCAAAAAAGTG+CGG | - | chr1.4:56618655-56618674 | MS.gene62943:intron | 25.0% |
| !!! | CTTTTTCAATTTTAGCTTCT+GGG | - | chr1.4:56618762-56618781 | MS.gene62943:intron | 25.0% |
| !!! | TAGCACGTTAATTTTTTACT+AGG | - | chr1.4:56620233-56620252 | MS.gene62943:intron | 25.0% |
| AATCCAGTATAGTCAAAGAA+TGG | + | chr1.4:56618790-56618809 | None:intergenic | 30.0% | |
| ACAATAAAAGGCTTAAAAGG+AGG | + | chr1.4:56620731-56620750 | None:intergenic | 30.0% | |
| ATATTTATTAGGCATCTGGT+CGG | - | chr1.4:56619493-56619512 | MS.gene62943:intron | 30.0% | |
| ATGATAGAAGTGATTACAAC+AGG | - | chr1.4:56620256-56620275 | MS.gene62943:intron | 30.0% | |
| ATGATATAATTGAGTCTAGG+AGG | + | chr1.4:56620403-56620422 | None:intergenic | 30.0% | |
| ATGTACATTTCTATGAAGCA+CGG | - | chr1.4:56618910-56618929 | MS.gene62943:intron | 30.0% | |
| CAATAAAAGGCTTAAAAGGA+GGG | + | chr1.4:56620730-56620749 | None:intergenic | 30.0% | |
| CGAAAAGTAGCATGAATTAA+GGG | + | chr1.4:56618577-56618596 | None:intergenic | 30.0% | |
| GAAATGTGAATGTAAACTTC+TGG | + | chr1.4:56620488-56620507 | None:intergenic | 30.0% | |
| GAAGTTTACATTCACATTTC+CGG | - | chr1.4:56620488-56620507 | MS.gene62943:intron | 30.0% | |
| GAATTAAGGGTTATTACCTT+CGG | + | chr1.4:56618564-56618583 | None:intergenic | 30.0% | |
| GATACTCAAAACTACAGATT+CGG | + | chr1.4:56619409-56619428 | None:intergenic | 30.0% | |
| GCAAAGTTGAAATAAATGAC+AGG | + | chr1.4:56620548-56620567 | None:intergenic | 30.0% | |
| GTGGAACAATTTATGCAAAT+GGG | - | chr1.4:56620997-56621016 | MS.gene62943:CDS | 30.0% | |
| TAACAAAACAGAATGCATGA+AGG | + | chr1.4:56619827-56619846 | None:intergenic | 30.0% | |
| TAGAAATAATTATGGCTGAC+AGG | - | chr1.4:56620647-56620666 | MS.gene62943:intron | 30.0% | |
| TAGGAGGAAATTATTAACTG+CGG | + | chr1.4:56620387-56620406 | None:intergenic | 30.0% | |
| TCGAAAAGTAGCATGAATTA+AGG | + | chr1.4:56618578-56618597 | None:intergenic | 30.0% | |
| TGTGTTTGATCTTTGATACA+CGG | - | chr1.4:56620433-56620452 | MS.gene62943:intron | 30.0% | |
| TTACATCCTTATCATGAAAG+TGG | - | chr1.4:56620171-56620190 | MS.gene62943:intron | 30.0% | |
| ! | AAAAGGAGGGATCATTTTAT+GGG | + | chr1.4:56620717-56620736 | None:intergenic | 30.0% |
| ! | ATAGTACTTTTCAGTGACTT+TGG | - | chr1.4:56620196-56620215 | MS.gene62943:intron | 30.0% |
| ! | TAAAAGGAGGGATCATTTTA+TGG | + | chr1.4:56620718-56620737 | None:intergenic | 30.0% |
| ! | TCTGGAACAATAAATTACCA+GGG | + | chr1.4:56620470-56620489 | None:intergenic | 30.0% |
| ! | TCTTTTTATCTAATTCTGGG+TGG | + | chr1.4:56619996-56620015 | None:intergenic | 30.0% |
| !! | TGTTTCTGATTTTCAGTGAT+AGG | - | chr1.4:56619967-56619986 | MS.gene62943:intron | 30.0% |
| !! | TTCTGGAACAATAAATTACC+AGG | + | chr1.4:56620471-56620490 | None:intergenic | 30.0% |
| !!! | TTTTCAGTGACTTTGGTTTT+TGG | - | chr1.4:56620203-56620222 | MS.gene62943:intron | 30.0% |
| AAATGCTTTACATGAGTGGA+AGG | - | chr1.4:56620521-56620540 | MS.gene62943:CDS | 35.0% | |
| ACAAGTTATTTACAGGATCC+TGG | - | chr1.4:56619161-56619180 | MS.gene62943:intron | 35.0% | |
| ACAGTGTGGCAATGTATTAA+AGG | - | chr1.4:56619184-56619203 | MS.gene62943:intron | 35.0% | |
| AGATGCCTACACTTGATATA+TGG | + | chr1.4:56620774-56620793 | None:intergenic | 35.0% | |
| ATGGTCCATATATCAAGTGT+AGG | - | chr1.4:56620766-56620785 | MS.gene62943:intron | 35.0% | |
| ATTCGGACAGAAAATTTCGA+TGG | + | chr1.4:56619392-56619411 | None:intergenic | 35.0% | |
| CAAGTAGATGACCCAATTTA+AGG | + | chr1.4:56619079-56619098 | None:intergenic | 35.0% | |
| CAGTGTGGCAATGTATTAAA+GGG | - | chr1.4:56619185-56619204 | MS.gene62943:intron | 35.0% | |
| CTAGTCACACTCTTATTACT+TGG | + | chr1.4:56620100-56620119 | None:intergenic | 35.0% | |
| CTATGACCACTTTCATGATA+AGG | + | chr1.4:56620180-56620199 | None:intergenic | 35.0% | |
| GAAATGCTTCCTGTTTCAAA+TGG | + | chr1.4:56620334-56620353 | None:intergenic | 35.0% | |
| GCTTCGTAATATTGAAAAGC+AGG | - | chr1.4:56618736-56618755 | MS.gene62943:CDS | 35.0% | |
| GGTGGAACAATTTATGCAAA+TGG | - | chr1.4:56620996-56621015 | MS.gene62943:CDS | 35.0% | |
| GTCAGGAAAAGCAAAATCAT+GGG | - | chr1.4:56619543-56619562 | MS.gene62943:intron | 35.0% | |
| GTTCCATTCTTTGACTATAC+TGG | - | chr1.4:56618784-56618803 | MS.gene62943:intron | 35.0% | |
| TAATGAAAAGAGCCTGTCTT+CGG | + | chr1.4:56619923-56619942 | None:intergenic | 35.0% | |
| TATTTATTAGGCATCTGGTC+GGG | - | chr1.4:56619494-56619513 | MS.gene62943:intron | 35.0% | |
| TTATCCATCCTATCATCCTT+AGG | + | chr1.4:56619431-56619450 | None:intergenic | 35.0% | |
| TTGAGTATCCTAAGGATGAT+AGG | - | chr1.4:56619420-56619439 | MS.gene62943:intron | 35.0% | |
| TTTCGATGGTACTTCTTCTA+CGG | + | chr1.4:56619378-56619397 | None:intergenic | 35.0% | |
| ! | ATCATTTTATGGGATAGGAG+AGG | + | chr1.4:56620707-56620726 | None:intergenic | 35.0% |
| ! | CAAGTAATAAGAGTGTGACT+AGG | - | chr1.4:56620098-56620117 | MS.gene62943:intron | 35.0% |
| ! | TGCTGAAAGCACAATGAAAT+TGG | - | chr1.4:56619715-56619734 | MS.gene62943:intron | 35.0% |
| !!! | CTGTAGTTTTGAGTATCCTA+AGG | - | chr1.4:56619412-56619431 | MS.gene62943:intron | 35.0% |
| AATGAAAAGAGCCTGTCTTC+GGG | + | chr1.4:56619922-56619941 | None:intergenic | 40.0% | |
| ACGAAGCTCTTCATGAAGTT+TGG | + | chr1.4:56618723-56618742 | None:intergenic | 40.0% | |
| CAGTGTTCTTTGTTGACGAT+AGG | + | chr1.4:56619223-56619242 | None:intergenic | 40.0% | |
| CTACCTGTTCTTTCAGTACT+TGG | - | chr1.4:56619326-56619345 | MS.gene62943:intron | 40.0% | |
| CTCGACACAGGTTTATGATA+TGG | - | chr1.4:56619136-56619155 | MS.gene62943:intron | 40.0% | |
| GGTCAGGAAAAGCAAAATCA+TGG | - | chr1.4:56619542-56619561 | MS.gene62943:intron | 40.0% | |
| GTAGGCATCTTATCTCAACA+GGG | - | chr1.4:56620784-56620803 | MS.gene62943:intron | 40.0% | |
| GTATCCTAAGGATGATAGGA+TGG | - | chr1.4:56619424-56619443 | MS.gene62943:intron | 40.0% | |
| TATAGGGGTAAACCGAAGAA+AGG | - | chr1.4:56621122-56621141 | MS.gene62943:intron | 40.0% | |
| TGGGTCACACTCTTATTACT+TGG | + | chr1.4:56620040-56620059 | None:intergenic | 40.0% | |
| TGTAGGCATCTTATCTCAAC+AGG | - | chr1.4:56620783-56620802 | MS.gene62943:intron | 40.0% | |
| ! | ATAAGAGTGTGACTAGGTCT+TGG | - | chr1.4:56620104-56620123 | MS.gene62943:intron | 40.0% |
| ! | GAGGGATCATTTTATGGGAT+AGG | + | chr1.4:56620712-56620731 | None:intergenic | 40.0% |
| ! | GATCTCCCATCTGAGATAAA+TGG | + | chr1.4:56620951-56620970 | None:intergenic | 40.0% |
| ! | GTGTATTTTGTTCTCGACAC+AGG | - | chr1.4:56619124-56619143 | MS.gene62943:intron | 40.0% |
| ! | GTTGAGTTAAGAGTTTTGCG+TGG | - | chr1.4:56620278-56620297 | MS.gene62943:intron | 40.0% |
| ! | TCAGATGGGAGATCAGATTT+TGG | - | chr1.4:56620957-56620976 | MS.gene62943:intron | 40.0% |
| ! | TCTTTGATACACGGAGTACT+AGG | - | chr1.4:56620442-56620461 | MS.gene62943:intron | 40.0% |
| ! | TTTTTGTTGGCAGCTTGAAG+CGG | - | chr1.4:56619881-56619900 | MS.gene62943:intron | 40.0% |
| !! | CTACCAAGTACTGAAAGAAC+AGG | + | chr1.4:56619332-56619351 | None:intergenic | 40.0% |
| !! | TGAAACAGGAAGCATTTCAG+AGG | - | chr1.4:56620336-56620355 | MS.gene62943:intron | 40.0% |
| !! | TTTGGCTCTTCTACTAAGCA+AGG | + | chr1.4:56618705-56618724 | None:intergenic | 40.0% |
| AAGAGATGCGAAGAGAGCAA+GGG | - | chr1.4:56621157-56621176 | MS.gene62943:intron | 45.0% | |
| AAGGAAGCCAACATTGCTGA+AGG | + | chr1.4:56618686-56618705 | None:intergenic | 45.0% | |
| AATACATTGCCACACTGTCC+AGG | + | chr1.4:56619182-56619201 | None:intergenic | 45.0% | |
| ACTCACTGTGATACTGTGCT+GGG | - | chr1.4:56619597-56619616 | MS.gene62943:intron | 45.0% | |
| AGGAAGCCAACATTGCTGAA+GGG | + | chr1.4:56618685-56618704 | None:intergenic | 45.0% | |
| GAAAATCAGAAACACACCGC+TGG | + | chr1.4:56619961-56619980 | None:intergenic | 45.0% | |
| GGTAAACCGAAGAAAGGAAG+AGG | - | chr1.4:56621128-56621147 | MS.gene62943:intron | 45.0% | |
| TACTCACTGTGATACTGTGC+TGG | - | chr1.4:56619596-56619615 | MS.gene62943:intron | 45.0% | |
| TTTGGTCCTGGTCGATCAAA+AGG | - | chr1.4:56620975-56620994 | MS.gene62943:intron | 45.0% | |
| !! | TAAAAATATATAGTTATTTA+TGG | - | chr1.4:56619774-56619793 | MS.gene62943:intron | 5.0% |
| !! | TCAAATAAAAAATTAATAAA+AGG | + | chr1.4:56618877-56618896 | None:intergenic | 5.0% |
| CAAGAGATGCGAAGAGAGCA+AGG | - | chr1.4:56621156-56621175 | MS.gene62943:intron | 50.0% | |
| CTTGCTCTCTTCGCATCTCT+TGG | + | chr1.4:56621158-56621177 | None:intergenic | 50.0% | |
| GAAAGTTTCAGCCCGAAGAC+AGG | - | chr1.4:56619908-56619927 | MS.gene62943:intron | 50.0% | |
| GGTGAACCCTTCAGCAATGT+TGG | - | chr1.4:56618676-56618695 | MS.gene62943:intron | 50.0% | |
| TTACAGGATCCTGGACAGTG+TGG | - | chr1.4:56619170-56619189 | MS.gene62943:intron | 50.0% | |
| ! | GTTCCACCTTTTGATCGACC+AGG | + | chr1.4:56620984-56621003 | None:intergenic | 50.0% |
| !! | CAGAAGTGTCAGTGCTACAG+AGG | - | chr1.4:56618986-56619005 | MS.gene62943:intron | 50.0% |
| !! | GGGAGATCAGATTTTGGTCC+TGG | - | chr1.4:56620963-56620982 | MS.gene62943:intron | 50.0% |
| ATCTTCAGTGACCTCGCCAG+CGG | - | chr1.4:56619942-56619961 | MS.gene62943:intron | 55.0% | |
| GGCGCACCTCTTCCTTTCTT+CGG | + | chr1.4:56621137-56621156 | None:intergenic | 55.0% | |
| GGTCCTGGTCGATCAAAAGG+TGG | - | chr1.4:56620978-56620997 | MS.gene62943:intron | 55.0% | |
| TAGGCAGAAGAGCTTGCAGC+TGG | - | chr1.4:56620846-56620865 | MS.gene62943:intron | 55.0% | |
| ! | ACACGGAGTACTAGGAACCC+TGG | - | chr1.4:56620450-56620469 | MS.gene62943:intron | 55.0% |
| GAGCTTGCAGCTGGACGAGA+CGG | - | chr1.4:56620855-56620874 | MS.gene62943:intron | 60.0% | |
| TCAGAAACACACCGCTGGCG+AGG | + | chr1.4:56619956-56619975 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 56618554 | 56621185 | 56618554 | ID=MS.gene62943 |
| chr1.4 | mRNA | 56618554 | 56621185 | 56618554 | ID=MS.gene62943.t1;Parent=MS.gene62943 |
| chr1.4 | exon | 56621173 | 56621185 | 56621173 | ID=MS.gene62943.t1.exon1;Parent=MS.gene62943.t1 |
| chr1.4 | CDS | 56621173 | 56621185 | 56621173 | ID=cds.MS.gene62943.t1;Parent=MS.gene62943.t1 |
| chr1.4 | exon | 56620982 | 56621076 | 56620982 | ID=MS.gene62943.t1.exon2;Parent=MS.gene62943.t1 |
| chr1.4 | CDS | 56620982 | 56621076 | 56620982 | ID=cds.MS.gene62943.t1;Parent=MS.gene62943.t1 |
| chr1.4 | exon | 56620493 | 56620593 | 56620493 | ID=MS.gene62943.t1.exon3;Parent=MS.gene62943.t1 |
| chr1.4 | CDS | 56620493 | 56620593 | 56620493 | ID=cds.MS.gene62943.t1;Parent=MS.gene62943.t1 |
| chr1.4 | exon | 56619776 | 56619845 | 56619776 | ID=MS.gene62943.t1.exon4;Parent=MS.gene62943.t1 |
| chr1.4 | CDS | 56619776 | 56619845 | 56619776 | ID=cds.MS.gene62943.t1;Parent=MS.gene62943.t1 |
| chr1.4 | exon | 56618863 | 56618890 | 56618863 | ID=MS.gene62943.t1.exon5;Parent=MS.gene62943.t1 |
| chr1.4 | CDS | 56618863 | 56618890 | 56618863 | ID=cds.MS.gene62943.t1;Parent=MS.gene62943.t1 |
| chr1.4 | exon | 56618718 | 56618778 | 56618718 | ID=MS.gene62943.t1.exon6;Parent=MS.gene62943.t1 |
| chr1.4 | CDS | 56618718 | 56618778 | 56618718 | ID=cds.MS.gene62943.t1;Parent=MS.gene62943.t1 |
| chr1.4 | exon | 56618554 | 56618612 | 56618554 | ID=MS.gene62943.t1.exon7;Parent=MS.gene62943.t1 |
| chr1.4 | CDS | 56618554 | 56618612 | 56618554 | ID=cds.MS.gene62943.t1;Parent=MS.gene62943.t1 |
| Gene Sequence |
| Protein sequence |
