Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64665.t1 | XP_003616407.1 | 97.7 | 129 | 3 | 0 | 1 | 129 | 25 | 153 | 3.10E-67 | 264.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64665.t1 | Q9M2T2 | 52.3 | 130 | 60 | 2 | 1 | 128 | 25 | 154 | 3.0e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64665.t1 | G7KBR2 | 97.7 | 129 | 3 | 0 | 1 | 129 | 25 | 153 | 2.2e-67 | 264.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene64665 | 0.803383 | 3.58E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene64665 | 0.803054 | 4.19E-49 | -1.69E-46 |
| MS.gene049861 | MS.gene64665 | 0.812528 | 4.05E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene64665 | 0.837172 | 6.08E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene64665 | 0.814794 | 1.29E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene64665 | 0.811621 | 6.39E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene64665 | 0.808587 | 2.88E-50 | -1.69E-46 |
| MS.gene051184 | MS.gene64665 | 0.844025 | 9.76E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene64665 | 0.804635 | 1.97E-49 | -1.69E-46 |
| MS.gene051655 | MS.gene64665 | 0.818769 | 1.65E-52 | -1.69E-46 |
| MS.gene051831 | MS.gene64665 | 0.810384 | 1.18E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene64665 | 0.801145 | 1.03E-48 | -1.69E-46 |
| MS.gene052052 | MS.gene64665 | 0.827943 | 1.18E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene64665 | 0.802345 | 5.86E-49 | -1.69E-46 |
| MS.gene052493 | MS.gene64665 | 0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene64665 | 0.843742 | 1.16E-58 | -1.69E-46 |
| MS.gene053726 | MS.gene64665 | 0.812998 | 3.20E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene64665 | 0.806156 | 9.43E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene64665 | 0.833473 | 5.23E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene64665 | 0.836436 | 9.37E-57 | -1.69E-46 |
| MS.gene055222 | MS.gene64665 | 0.806602 | 7.60E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene64665 | 0.81732 | 3.51E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene64665 | 0.802742 | 4.86E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene64665 | 0.823725 | 1.19E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene64665 | 0.822825 | 1.93E-53 | -1.69E-46 |
| MS.gene056605 | MS.gene64665 | 0.811261 | 7.65E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene64665 | 0.811115 | 8.23E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene64665 | 0.828622 | 8.11E-55 | -1.69E-46 |
| MS.gene058429 | MS.gene64665 | 0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene64665 | 0.804749 | 1.86E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene64665 | 0.806312 | 8.74E-50 | -1.69E-46 |
| MS.gene059144 | MS.gene64665 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene059170 | MS.gene64665 | 0.819378 | 1.20E-52 | -1.69E-46 |
| MS.gene059774 | MS.gene64665 | 0.817271 | 3.60E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene64665 | 0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene64665 | 0.82161 | 3.68E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene64665 | 0.82299 | 1.76E-53 | -1.69E-46 |
| MS.gene060697 | MS.gene64665 | 0.818237 | 2.18E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene64665 | 0.819309 | 1.24E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64665.t1 | MTR_5g079880 | 97.674 | 129 | 3 | 0 | 1 | 129 | 25 | 153 | 1.01e-91 | 262 |
| MS.gene64665.t1 | MTR_5g079890 | 57.692 | 130 | 53 | 2 | 2 | 129 | 27 | 156 | 4.13e-46 | 147 |
| MS.gene64665.t1 | MTR_5g079890 | 59.821 | 112 | 44 | 1 | 2 | 112 | 27 | 138 | 1.11e-40 | 132 |
| MS.gene64665.t1 | MTR_8g032320 | 41.985 | 131 | 61 | 4 | 1 | 127 | 25 | 144 | 1.83e-29 | 104 |
| MS.gene64665.t1 | MTR_8g032300 | 41.985 | 131 | 61 | 5 | 1 | 127 | 25 | 144 | 1.69e-28 | 102 |
| MS.gene64665.t1 | MTR_1g008950 | 44.954 | 109 | 49 | 3 | 1 | 109 | 25 | 122 | 4.20e-26 | 95.1 |
| MS.gene64665.t1 | MTR_8g030870 | 31.579 | 114 | 77 | 1 | 4 | 116 | 28 | 141 | 5.01e-16 | 70.9 |
| MS.gene64665.t1 | MTR_7g075960 | 49.123 | 57 | 25 | 1 | 1 | 57 | 1 | 53 | 1.45e-13 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64665.t1 | AT3G55470 | 52.713 | 129 | 60 | 1 | 1 | 128 | 25 | 153 | 2.94e-46 | 147 |
| MS.gene64665.t1 | AT3G55470 | 53.077 | 130 | 59 | 2 | 1 | 128 | 25 | 154 | 5.55e-45 | 144 |
| MS.gene64665.t1 | AT1G63220 | 38.168 | 131 | 67 | 4 | 1 | 128 | 25 | 144 | 6.55e-21 | 82.4 |
| MS.gene64665.t1 | AT4G00467 | 36.364 | 110 | 62 | 3 | 4 | 109 | 28 | 133 | 2.14e-18 | 77.0 |
| MS.gene64665.t1 | AT4G00467 | 36.364 | 110 | 62 | 3 | 4 | 109 | 28 | 133 | 3.03e-18 | 77.0 |
| MS.gene64665.t1 | AT1G63220 | 36.441 | 118 | 61 | 4 | 14 | 128 | 24 | 130 | 3.41e-15 | 67.4 |
Find 28 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATACTGACGATGAAAT+TGG | 0.286316 | 5.2:+67856583 | MS.gene64665:CDS |
| AATCTATGTAAAGGATCTAT+TGG | 0.340056 | 5.2:+67856111 | MS.gene64665:CDS |
| CACAAGAGCAGTGTAGTTCA+TGG | 0.424916 | 5.2:+67854119 | MS.gene64665:CDS |
| TTGTATTGGTCACCTGATCC+AGG | 0.448750 | 5.2:-67855617 | None:intergenic |
| ACAAATTTCTCATTCCATAC+AGG | 0.465079 | 5.2:-67855578 | None:intergenic |
| CAAGCTCAATCTTAAAATCA+TGG | 0.468524 | 5.2:+67855637 | MS.gene64665:CDS |
| TTGGAAGAAGGAGCAGAGAA+TGG | 0.493643 | 5.2:+67856130 | MS.gene64665:CDS |
| AGAGTGGAATACCCTGGATC+AGG | 0.509095 | 5.2:+67855605 | MS.gene64665:CDS |
| TATTGCGGTGAACTCGAAGT+TGG | 0.529111 | 5.2:+67856205 | MS.gene64665:CDS |
| CGTGTCCAGAATCTATGTAA+AGG | 0.538764 | 5.2:+67856102 | MS.gene64665:intron |
| GTAAAGGATCTATTGGAAGA+AGG | 0.540880 | 5.2:+67856118 | MS.gene64665:CDS |
| CGAGCTGACAATTCTTATTG+CGG | 0.556831 | 5.2:+67856190 | MS.gene64665:CDS |
| TTGTATTGTAAGAGAACATA+CGG | 0.560590 | 5.2:-67854086 | None:intergenic |
| TGGAAGAAGGAGCAGAGAAT+GGG | 0.560923 | 5.2:+67856131 | MS.gene64665:CDS |
| CGATGAAATTGGAGGATGGA+GGG | 0.575262 | 5.2:+67856594 | MS.gene64665:CDS |
| CAATCTTAAAATCATGGACA+AGG | 0.579708 | 5.2:+67855643 | MS.gene64665:CDS |
| TGAGAAATTTGTATTCAGAG+TGG | 0.587344 | 5.2:+67855589 | MS.gene64665:CDS |
| TGGTATAACTTACACTCGAA+AGG | 0.597779 | 5.2:+67856225 | MS.gene64665:CDS |
| CTGACGATGAAATTGGAGGA+TGG | 0.598909 | 5.2:+67856590 | MS.gene64665:CDS |
| GGCCTGACCAACAAAATCAT+CGG | 0.607539 | 5.2:-67855678 | None:intergenic |
| TGTATTGGTCACCTGATCCA+GGG | 0.614439 | 5.2:-67855616 | None:intergenic |
| ATGTTCTCTTACAATACAAG+AGG | 0.616803 | 5.2:+67854090 | MS.gene64665:CDS |
| GTATTCAGAGTGGAATACCC+TGG | 0.618075 | 5.2:+67855599 | MS.gene64665:CDS |
| ACGATGAAATTGGAGGATGG+AGG | 0.636782 | 5.2:+67856593 | MS.gene64665:CDS |
| ATTTCTCATTCCATACAGGA+CGG | 0.652655 | 5.2:-67855574 | None:intergenic |
| TATACTGACGATGAAATTGG+AGG | 0.665514 | 5.2:+67856586 | MS.gene64665:CDS |
| TCGTCCTCGCAAGTATAGTG+TGG | 0.665568 | 5.2:+67856165 | MS.gene64665:CDS |
| CGAACCACACTATACTTGCG+AGG | 0.693060 | 5.2:-67856169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGTAAAATCATAAAT+AGG | - | chr5.2:67856348-67856367 | None:intergenic | 10.0% |
| !! | TAATTGTAAAATCATAAATA+GGG | - | chr5.2:67856347-67856366 | None:intergenic | 10.0% |
| !! | TATTTATTTATTTGCTTAAC+TGG | + | chr5.2:67855524-67855543 | MS.gene64665:intron | 15.0% |
| !!! | TTCATAGATTAAATTTTATG+TGG | + | chr5.2:67854532-67854551 | MS.gene64665:intron | 15.0% |
| !! | GAAAATACTAAACATAAGTT+TGG | - | chr5.2:67856531-67856550 | None:intergenic | 20.0% |
| !! | TATGAAATAATGACAATCAA+TGG | - | chr5.2:67854518-67854537 | None:intergenic | 20.0% |
| !! | TGTAATTGACAATGAAAATT+AGG | - | chr5.2:67856475-67856494 | None:intergenic | 20.0% |
| !! | TTAGCATTTGAATTTCTTTA+TGG | - | chr5.2:67855364-67855383 | None:intergenic | 20.0% |
| !!! | AAAAGTCACATTTTTTACAA+TGG | - | chr5.2:67856304-67856323 | None:intergenic | 20.0% |
| !!! | ATTTTCATTGTCAATTACAT+TGG | + | chr5.2:67856476-67856495 | MS.gene64665:intron | 20.0% |
| !!! | TAAATGAATTGAACATTTTG+TGG | + | chr5.2:67854865-67854884 | MS.gene64665:intron | 20.0% |
| ! | AATCTATGTAAAGGATCTAT+TGG | + | chr5.2:67856111-67856130 | MS.gene64665:CDS | 25.0% |
| ! | ATTACCCTTTATCAATTATC+AGG | - | chr5.2:67856076-67856095 | None:intergenic | 25.0% |
| ! | GAAATCAGAAAGAAAAAGAA+AGG | - | chr5.2:67854807-67854826 | None:intergenic | 25.0% |
| ! | GCTCAAAATATGCAATTTAA+AGG | + | chr5.2:67855244-67855263 | MS.gene64665:intron | 25.0% |
| ! | TACTAAACATAAGTTTGGTT+TGG | - | chr5.2:67856526-67856545 | None:intergenic | 25.0% |
| ! | TTATGATATGTATGCATTCA+CGG | + | chr5.2:67856410-67856429 | MS.gene64665:intron | 25.0% |
| ! | TTCAAATGCTAATAAAACCT+TGG | + | chr5.2:67855372-67855391 | MS.gene64665:intron | 25.0% |
| ! | TTGACCTGATAATTGATAAA+GGG | + | chr5.2:67856069-67856088 | MS.gene64665:intron | 25.0% |
| ! | TTGTATTGTAAGAGAACATA+CGG | - | chr5.2:67854089-67854108 | None:intergenic | 25.0% |
| !! | AGTATTTTCTCTAATGTTCT+TGG | + | chr5.2:67856542-67856561 | MS.gene64665:intron | 25.0% |
| !! | ATGAAACTGCATTTTTGAAT+TGG | - | chr5.2:67855773-67855792 | None:intergenic | 25.0% |
| !! | ATTTGTTAGGTTTAATCTAG+GGG | + | chr5.2:67854733-67854752 | MS.gene64665:intron | 25.0% |
| !! | GAAAAAGGAAAAGATTTGTT+AGG | + | chr5.2:67854720-67854739 | MS.gene64665:intron | 25.0% |
| !! | GCATTTTTGAATTGGTTAAT+AGG | - | chr5.2:67855765-67855784 | None:intergenic | 25.0% |
| !! | TTGTAGTGAAATTTTATCCA+AGG | - | chr5.2:67855392-67855411 | None:intergenic | 25.0% |
| !! | TTTTTCTTTCTGATTTCTTG+TGG | + | chr5.2:67854810-67854829 | MS.gene64665:intron | 25.0% |
| !!! | AGATTTGTTAGGTTTAATCT+AGG | + | chr5.2:67854731-67854750 | MS.gene64665:intron | 25.0% |
| !!! | ATTTTAATCAATCATGACTC+TGG | - | chr5.2:67856015-67856034 | None:intergenic | 25.0% |
| !!! | GATTTGTTAGGTTTAATCTA+GGG | + | chr5.2:67854732-67854751 | MS.gene64665:intron | 25.0% |
| !!! | TTTTAAGATTGAGCTTGTAT+TGG | - | chr5.2:67855634-67855653 | None:intergenic | 25.0% |
| AACACTGCATCTATGAATAA+GGG | + | chr5.2:67855956-67855975 | MS.gene64665:intron | 30.0% | |
| ACAAAAAACCCTAAATGAGT+AGG | + | chr5.2:67855981-67856000 | MS.gene64665:intron | 30.0% | |
| ACAAATTTCTCATTCCATAC+AGG | - | chr5.2:67855581-67855600 | None:intergenic | 30.0% | |
| AGTTAGTTAATCTTCCCTAA+CGG | + | chr5.2:67854621-67854640 | MS.gene64665:intron | 30.0% | |
| ATGTTCTCTTACAATACAAG+AGG | + | chr5.2:67854090-67854109 | MS.gene64665:CDS | 30.0% | |
| CAAGCTCAATCTTAAAATCA+TGG | + | chr5.2:67855637-67855656 | MS.gene64665:CDS | 30.0% | |
| CAATCTTAAAATCATGGACA+AGG | + | chr5.2:67855643-67855662 | MS.gene64665:CDS | 30.0% | |
| CACTTTCAATGAAATGTTGA+AGG | + | chr5.2:67854455-67854474 | MS.gene64665:intron | 30.0% | |
| CTTGACCTGATAATTGATAA+AGG | + | chr5.2:67856068-67856087 | MS.gene64665:intron | 30.0% | |
| GAATATACTGACGATGAAAT+TGG | + | chr5.2:67856583-67856602 | MS.gene64665:CDS | 30.0% | |
| TAGATCCTTTACATAGATTC+TGG | - | chr5.2:67856110-67856129 | None:intergenic | 30.0% | |
| TCCTGAACCAATTTAACTAA+TGG | - | chr5.2:67854596-67854615 | None:intergenic | 30.0% | |
| TGAGAAATTTGTATTCAGAG+TGG | + | chr5.2:67855589-67855608 | MS.gene64665:CDS | 30.0% | |
| TGTAATGTCCTACTCATTTA+GGG | - | chr5.2:67855992-67856011 | None:intergenic | 30.0% | |
| TTATGTAGTTCATGATTCGA+CGG | + | chr5.2:67854565-67854584 | MS.gene64665:intron | 30.0% | |
| TTGAATGTAACCACATATGT+CGG | + | chr5.2:67855160-67855179 | MS.gene64665:intron | 30.0% | |
| TTTGAGAGAGAATAAGGAAA+AGG | - | chr5.2:67854150-67854169 | None:intergenic | 30.0% | |
| TTTGTTAGGTTTAATCTAGG+GGG | + | chr5.2:67854734-67854753 | MS.gene64665:intron | 30.0% | |
| ! | ACCATTAGTTAAATTGGTTC+AGG | + | chr5.2:67854592-67854611 | MS.gene64665:intron | 30.0% |
| ! | ATGAACTTTGAGAGAGAATA+AGG | - | chr5.2:67854156-67854175 | None:intergenic | 30.0% |
| ! | ATGACTGATGCAATTAGTTT+AGG | - | chr5.2:67855724-67855743 | None:intergenic | 30.0% |
| ! | TATTTTTCGTGATCTGTGAT+TGG | + | chr5.2:67855932-67855951 | MS.gene64665:intron | 30.0% |
| ! | TCATACACTACATATTGACT+AGG | - | chr5.2:67856385-67856404 | None:intergenic | 30.0% |
| ! | TTTTCTTCCGATGATTTTGT+TGG | + | chr5.2:67855671-67855690 | MS.gene64665:CDS | 30.0% |
| !! | AATTGCATATTTTGAGCAGT+TGG | - | chr5.2:67855241-67855260 | None:intergenic | 30.0% |
| !! | TATTTTGAGCAGTTGGAAAA+AGG | - | chr5.2:67855234-67855253 | None:intergenic | 30.0% |
| AAATACTCCACCATTCACTT+CGG | - | chr5.2:67854484-67854503 | None:intergenic | 35.0% | |
| AAGGAAAACCTATGTAGAAC+CGG | - | chr5.2:67855208-67855227 | None:intergenic | 35.0% | |
| ATCTGACACTATAGCACAAA+AGG | + | chr5.2:67854909-67854928 | MS.gene64665:intron | 35.0% | |
| ATGTTCTTGGAATTCATCAC+AGG | + | chr5.2:67856555-67856574 | MS.gene64665:intron | 35.0% | |
| ATTATGAAGTGGCATGTTCA+TGG | + | chr5.2:67854972-67854991 | MS.gene64665:intron | 35.0% | |
| ATTTCTCATTCCATACAGGA+CGG | - | chr5.2:67855577-67855596 | None:intergenic | 35.0% | |
| CAACACTGCATCTATGAATA+AGG | + | chr5.2:67855955-67855974 | MS.gene64665:intron | 35.0% | |
| CACATACATGATACATGCAA+TGG | + | chr5.2:67855275-67855294 | MS.gene64665:intron | 35.0% | |
| CCACACATTTCATTATGAAG+TGG | + | chr5.2:67854961-67854980 | MS.gene64665:intron | 35.0% | |
| CCACTTCATAATGAAATGTG+TGG | - | chr5.2:67854964-67854983 | None:intergenic | 35.0% | |
| CCTGTTGTGATATTGAAAGA+GGG | + | chr5.2:67854692-67854711 | MS.gene64665:intron | 35.0% | |
| CTTTACATAGATTCTGGACA+CGG | - | chr5.2:67856104-67856123 | None:intergenic | 35.0% | |
| GAAAGAAAAAGAAAGGCAGA+AGG | - | chr5.2:67854800-67854819 | None:intergenic | 35.0% | |
| GAAGCAATTGAAGTCTTACA+CGG | - | chr5.2:67855702-67855721 | None:intergenic | 35.0% | |
| GCTAGTATCTTAATCAACAG+TGG | + | chr5.2:67855326-67855345 | MS.gene64665:intron | 35.0% | |
| GGTGGAACCATTAGTTAAAT+TGG | + | chr5.2:67854586-67854605 | MS.gene64665:intron | 35.0% | |
| GTAAAGGATCTATTGGAAGA+AGG | + | chr5.2:67856118-67856137 | MS.gene64665:CDS | 35.0% | |
| GTGTAATGTCCTACTCATTT+AGG | - | chr5.2:67855993-67856012 | None:intergenic | 35.0% | |
| GTTAGTTAATCTTCCCTAAC+GGG | + | chr5.2:67854622-67854641 | MS.gene64665:intron | 35.0% | |
| TATACTGACGATGAAATTGG+AGG | + | chr5.2:67856586-67856605 | MS.gene64665:CDS | 35.0% | |
| TCCTGTTGTGATATTGAAAG+AGG | + | chr5.2:67854691-67854710 | MS.gene64665:intron | 35.0% | |
| TCTGACACTATAGCACAAAA+GGG | + | chr5.2:67854910-67854929 | MS.gene64665:intron | 35.0% | |
| TGAAAGAGGGAAAGTGAAAA+AGG | + | chr5.2:67854705-67854724 | MS.gene64665:intron | 35.0% | |
| TGGTATAACTTACACTCGAA+AGG | + | chr5.2:67856225-67856244 | MS.gene64665:CDS | 35.0% | |
| TGGTGTCTTAAACCTTTGTT+AGG | + | chr5.2:67854229-67854248 | MS.gene64665:intron | 35.0% | |
| TGTTTCGTAGTACAAACACA+AGG | - | chr5.2:67854299-67854318 | None:intergenic | 35.0% | |
| TTCTCTATCTCTCCTAACAA+AGG | - | chr5.2:67854244-67854263 | None:intergenic | 35.0% | |
| TTTACATAGATTCTGGACAC+GGG | - | chr5.2:67856103-67856122 | None:intergenic | 35.0% | |
| TTTCTGATTTCTTGTGGTTG+TGG | + | chr5.2:67854816-67854835 | MS.gene64665:intron | 35.0% | |
| TTTCTGTGTGTTTGTGGTTA+TGG | + | chr5.2:67854209-67854228 | MS.gene64665:intron | 35.0% | |
| !! | AAGCAGACGTTTACTTTTAC+TGG | - | chr5.2:67855302-67855321 | None:intergenic | 35.0% |
| !! | GACATCAAATGCTCACTTTT+TGG | + | chr5.2:67854184-67854203 | MS.gene64665:intron | 35.0% |
| !!! | TGTGTATTCCGCTTTTTCAA+GGG | + | chr5.2:67855027-67855046 | MS.gene64665:intron | 35.0% |
| ACTAATCCTTGTACCCGTTA+GGG | - | chr5.2:67854638-67854657 | None:intergenic | 40.0% | |
| AGCAGTTGGAAAAAGGAAGA+AGG | - | chr5.2:67855227-67855246 | None:intergenic | 40.0% | |
| AGGGGGGTAATAAAGCAAAT+TGG | + | chr5.2:67854841-67854860 | MS.gene64665:intron | 40.0% | |
| ATATGTATGCATTCACGGTG+GGG | + | chr5.2:67856415-67856434 | MS.gene64665:intron | 40.0% | |
| ATTTCTTGTGGTTGTGGAGA+GGG | + | chr5.2:67854822-67854841 | MS.gene64665:intron | 40.0% | |
| CCCTCTTTCAATATCACAAC+AGG | - | chr5.2:67854695-67854714 | None:intergenic | 40.0% | |
| CGAGCTGACAATTCTTATTG+CGG | + | chr5.2:67856190-67856209 | MS.gene64665:CDS | 40.0% | |
| CGTGTCCAGAATCTATGTAA+AGG | + | chr5.2:67856102-67856121 | MS.gene64665:intron | 40.0% | |
| CTATTCAACAAGCGTATAGC+TGG | - | chr5.2:67855863-67855882 | None:intergenic | 40.0% | |
| GATATGTATGCATTCACGGT+GGG | + | chr5.2:67856414-67856433 | MS.gene64665:intron | 40.0% | |
| GGTGTATTGAATGATGCAGA+GGG | + | chr5.2:67855545-67855564 | MS.gene64665:intron | 40.0% | |
| GTGTATTGAATGATGCAGAG+GGG | + | chr5.2:67855546-67855565 | MS.gene64665:intron | 40.0% | |
| GTTGTGTTAGAGTTCGACAT+CGG | + | chr5.2:67854415-67854434 | MS.gene64665:intron | 40.0% | |
| TAATACGACACCGACATATG+TGG | - | chr5.2:67855173-67855192 | None:intergenic | 40.0% | |
| TACTAATCCTTGTACCCGTT+AGG | - | chr5.2:67854639-67854658 | None:intergenic | 40.0% | |
| TGATATGTATGCATTCACGG+TGG | + | chr5.2:67856413-67856432 | MS.gene64665:intron | 40.0% | |
| TGGTGTATTGAATGATGCAG+AGG | + | chr5.2:67855544-67855563 | MS.gene64665:intron | 40.0% | |
| TGTATTGAATGATGCAGAGG+GGG | + | chr5.2:67855547-67855566 | MS.gene64665:intron | 40.0% | |
| TTATCCATGTGTGACAACTG+AGG | - | chr5.2:67854939-67854958 | None:intergenic | 40.0% | |
| TTGGCATTTCTGTGTGTTTG+TGG | + | chr5.2:67854203-67854222 | MS.gene64665:intron | 40.0% | |
| ! | GTTTTCGTCAGTGCTTCATA+AGG | - | chr5.2:67855080-67855099 | None:intergenic | 40.0% |
| ! | TTCCGATGATTTTGTTGGTC+AGG | + | chr5.2:67855676-67855695 | MS.gene64665:CDS | 40.0% |
| !!! | GTGTGTATTCCGCTTTTTCA+AGG | + | chr5.2:67855026-67855045 | MS.gene64665:intron | 40.0% |
| AAGCGGAATACACACAGAAG+AGG | - | chr5.2:67855021-67855040 | None:intergenic | 45.0% | |
| ACGATGAAATTGGAGGATGG+AGG | + | chr5.2:67856593-67856612 | MS.gene64665:CDS | 45.0% | |
| AGCGGAATACACACAGAAGA+GGG | - | chr5.2:67855020-67855039 | None:intergenic | 45.0% | |
| CACAAGAGCAGTGTAGTTCA+TGG | + | chr5.2:67854119-67854138 | MS.gene64665:CDS | 45.0% | |
| CGATGAAATTGGAGGATGGA+GGG | + | chr5.2:67856594-67856613 | MS.gene64665:CDS | 45.0% | |
| CGTATTAGTGTCTGACAGAC+CGG | + | chr5.2:67855186-67855205 | MS.gene64665:intron | 45.0% | |
| CTGACGATGAAATTGGAGGA+TGG | + | chr5.2:67856590-67856609 | MS.gene64665:CDS | 45.0% | |
| GATTTCTTGTGGTTGTGGAG+AGG | + | chr5.2:67854821-67854840 | MS.gene64665:intron | 45.0% | |
| GGATGCAGTTCATATGTGAC+TGG | + | chr5.2:67854755-67854774 | MS.gene64665:intron | 45.0% | |
| GGCCTGACCAACAAAATCAT+CGG | - | chr5.2:67855681-67855700 | None:intergenic | 45.0% | |
| GTATTCAGAGTGGAATACCC+TGG | + | chr5.2:67855599-67855618 | MS.gene64665:CDS | 45.0% | |
| GTATTGAATGATGCAGAGGG+GGG | + | chr5.2:67855548-67855567 | MS.gene64665:intron | 45.0% | |
| GTTACCTCAGTTGTCACACA+TGG | + | chr5.2:67854932-67854951 | MS.gene64665:intron | 45.0% | |
| TAGAGTTCGACATCGGACAT+GGG | + | chr5.2:67854422-67854441 | MS.gene64665:intron | 45.0% | |
| TATGTATGCATTCACGGTGG+GGG | + | chr5.2:67856416-67856435 | MS.gene64665:intron | 45.0% | |
| TATTGCGGTGAACTCGAAGT+TGG | + | chr5.2:67856205-67856224 | MS.gene64665:CDS | 45.0% | |
| TGGAAGAAGGAGCAGAGAAT+GGG | + | chr5.2:67856131-67856150 | MS.gene64665:CDS | 45.0% | |
| TGTAGTTCATGATTCGACGG+TGG | + | chr5.2:67854568-67854587 | MS.gene64665:intron | 45.0% | |
| TTAGAGTTCGACATCGGACA+TGG | + | chr5.2:67854421-67854440 | MS.gene64665:intron | 45.0% | |
| TTGGAAGAAGGAGCAGAGAA+TGG | + | chr5.2:67856130-67856149 | MS.gene64665:CDS | 45.0% | |
| TTTCTTGTGGTTGTGGAGAG+GGG | + | chr5.2:67854823-67854842 | MS.gene64665:intron | 45.0% | |
| ! | AATCTTCCCTAACGGGTACA+AGG | + | chr5.2:67854629-67854648 | MS.gene64665:intron | 45.0% |
| ! | TGTATTGGTCACCTGATCCA+GGG | - | chr5.2:67855619-67855638 | None:intergenic | 45.0% |
| ! | TTGTATTGGTCACCTGATCC+AGG | - | chr5.2:67855620-67855639 | None:intergenic | 45.0% |
| !!! | ATTCCGCTTTTTCAAGGGCA+CGG | + | chr5.2:67855032-67855051 | MS.gene64665:intron | 45.0% |
| AGAGTGGAATACCCTGGATC+AGG | + | chr5.2:67855605-67855624 | MS.gene64665:CDS | 50.0% | |
| CGAACCACACTATACTTGCG+AGG | - | chr5.2:67856172-67856191 | None:intergenic | 50.0% | |
| GCGGAATACACACAGAAGAG+GGG | - | chr5.2:67855019-67855038 | None:intergenic | 50.0% | |
| TCGTCCTCGCAAGTATAGTG+TGG | + | chr5.2:67856165-67856184 | MS.gene64665:CDS | 50.0% | |
| TTCCCGTGCCCTTGAAAAAG+CGG | - | chr5.2:67855038-67855057 | None:intergenic | 50.0% | |
| TTCTTGTGGTTGTGGAGAGG+GGG | + | chr5.2:67854824-67854843 | MS.gene64665:intron | 50.0% | |
| TTGAAGGCAGCCGAAGTGAA+TGG | + | chr5.2:67854471-67854490 | MS.gene64665:intron | 50.0% | |
| ! | CTGACAGACCGGTTCTACAT+AGG | + | chr5.2:67855197-67855216 | MS.gene64665:intron | 50.0% |
| !!! | TTCCGCTTTTTCAAGGGCAC+GGG | + | chr5.2:67855033-67855052 | MS.gene64665:intron | 50.0% |
| AAGGCAGCCGAAGTGAATGG+TGG | + | chr5.2:67854474-67854493 | MS.gene64665:intron | 55.0% | |
| GGGCACGGGAATAGCAAAGT+AGG | + | chr5.2:67855047-67855066 | MS.gene64665:intron | 55.0% | |
| TCTTGTGGTTGTGGAGAGGG+GGG | + | chr5.2:67854825-67854844 | MS.gene64665:intron | 55.0% | |
| AGGGGGGTAGCCGTCCTGTA+TGG | + | chr5.2:67855564-67855583 | MS.gene64665:CDS | 65.0% | |
| ! | TCACGGTGGGGGCGCATGTT+TGG | + | chr5.2:67856427-67856446 | MS.gene64665:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 67854080 | 67856630 | 67854080 | ID=MS.gene64665 |
| chr5.2 | mRNA | 67854080 | 67856630 | 67854080 | ID=MS.gene64665.t1;Parent=MS.gene64665 |
| chr5.2 | exon | 67854080 | 67854140 | 67854080 | ID=MS.gene64665.t1.exon1;Parent=MS.gene64665.t1 |
| chr5.2 | CDS | 67854080 | 67854140 | 67854080 | ID=cds.MS.gene64665.t1;Parent=MS.gene64665.t1 |
| chr5.2 | exon | 67855564 | 67855702 | 67855564 | ID=MS.gene64665.t1.exon2;Parent=MS.gene64665.t1 |
| chr5.2 | CDS | 67855564 | 67855702 | 67855564 | ID=cds.MS.gene64665.t1;Parent=MS.gene64665.t1 |
| chr5.2 | exon | 67856111 | 67856246 | 67856111 | ID=MS.gene64665.t1.exon3;Parent=MS.gene64665.t1 |
| chr5.2 | CDS | 67856111 | 67856246 | 67856111 | ID=cds.MS.gene64665.t1;Parent=MS.gene64665.t1 |
| chr5.2 | exon | 67856577 | 67856630 | 67856577 | ID=MS.gene64665.t1.exon4;Parent=MS.gene64665.t1 |
| chr5.2 | CDS | 67856577 | 67856630 | 67856577 | ID=cds.MS.gene64665.t1;Parent=MS.gene64665.t1 |
| Gene Sequence |
| Protein sequence |
