Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64853.t1 | XP_024639640.1 | 94.9 | 313 | 16 | 0 | 1 | 313 | 21 | 333 | 3.30E-171 | 610.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64853.t1 | O81970 | 48.1 | 312 | 160 | 1 | 1 | 310 | 183 | 494 | 7.9e-81 | 302.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64853.t1 | G7K004 | 94.9 | 313 | 16 | 0 | 1 | 313 | 160 | 472 | 2.4e-171 | 610.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene64853 | 0.83895 | 2.12E-57 | -1.69E-46 |
| MS.gene049801 | MS.gene64853 | 0.809106 | 2.23E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene64853 | 0.81933 | 1.23E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene64853 | 0.864643 | 1.05E-64 | -1.69E-46 |
| MS.gene051800 | MS.gene64853 | 0.809868 | 1.53E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene64853 | 0.809974 | 1.45E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene64853 | 0.832735 | 7.98E-56 | -1.69E-46 |
| MS.gene052675 | MS.gene64853 | 0.833344 | 5.63E-56 | -1.69E-46 |
| MS.gene052677 | MS.gene64853 | 0.839841 | 1.24E-57 | -1.69E-46 |
| MS.gene053494 | MS.gene64853 | 0.803631 | 3.18E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene64853 | 0.813756 | 2.18E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene64853 | 0.833207 | 6.09E-56 | -1.69E-46 |
| MS.gene055227 | MS.gene64853 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene64853 | 0.832157 | 1.11E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene64853 | 0.819828 | 9.46E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene64853 | 0.822208 | 2.68E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene64853 | 0.811728 | 6.05E-51 | -1.69E-46 |
| MS.gene056873 | MS.gene64853 | 0.818887 | 1.55E-52 | -1.69E-46 |
| MS.gene057194 | MS.gene64853 | 0.806442 | 8.21E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene64853 | 0.81154 | 6.65E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene64853 | 0.813265 | 2.79E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene64853 | 0.8095 | 1.84E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene64853 | 0.820333 | 7.25E-53 | -1.69E-46 |
| MS.gene059128 | MS.gene64853 | 0.815536 | 8.79E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene64853 | 0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene64853 | 0.815716 | 8.02E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene64853 | 0.83417 | 3.50E-56 | -1.69E-46 |
| MS.gene060310 | MS.gene64853 | 0.824928 | 6.19E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene64853 | 0.828889 | 6.99E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene64853 | 0.818999 | 1.46E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene64853 | 0.801277 | 9.71E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene64853 | 0.806087 | 9.75E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene64853 | 0.84727 | 1.29E-59 | -1.69E-46 |
| MS.gene060803 | MS.gene64853 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene64853 | 0.809785 | 1.59E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene64853 | 0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene64853 | 0.809535 | 1.80E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene64853 | 0.810822 | 9.52E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAATTTCTCCTACTTAA+AGG | 0.151625 | 5.1:-14261363 | MS.gene64853:CDS |
| TTCTGATTATATTCCATTTA+TGG | 0.152965 | 5.1:-14262019 | MS.gene64853:CDS |
| GACTTTGAATTTATTCCCTT+TGG | 0.271822 | 5.1:-14261122 | MS.gene64853:CDS |
| TCTTGTCCAAGGAAATTTAT+AGG | 0.271944 | 5.1:+14261143 | None:intergenic |
| ATAATTTGTAGGGTTGCTTT+TGG | 0.277574 | 5.1:-14262129 | None:intergenic |
| ACATTGGGACCTTGGCAATA+AGG | 0.283394 | 5.1:+14260928 | None:intergenic |
| TTATCAATCCAACCCATAAA+TGG | 0.285094 | 5.1:+14262006 | None:intergenic |
| TTCTATGGCAGTTGCATCAT+TGG | 0.290490 | 5.1:-14261072 | MS.gene64853:CDS |
| TCTGATTATATTCCATTTAT+GGG | 0.291083 | 5.1:-14262018 | MS.gene64853:CDS |
| CAACATCAGCTACATTAGTT+TGG | 0.292688 | 5.1:-14261487 | MS.gene64853:CDS |
| CTTGTAAATTGTTGTCCATT+TGG | 0.293981 | 5.1:+14261898 | None:intergenic |
| CTCTCTGGATAAAACTCTTC+TGG | 0.301367 | 5.1:+14261179 | None:intergenic |
| ATATTCTATATTCCATTGAT+TGG | 0.324911 | 5.1:-14261034 | MS.gene64853:CDS |
| AGAGATTATTGATGAACATT+TGG | 0.343337 | 5.1:-14261923 | MS.gene64853:CDS |
| ACATACACTATTGTCTTTGC+TGG | 0.350131 | 5.1:+14261245 | None:intergenic |
| TTCATAGAGACTTTGATGTT+TGG | 0.352734 | 5.1:-14261208 | MS.gene64853:CDS |
| GAATTTATTCCCTTTGGATC+TGG | 0.366971 | 5.1:-14261116 | MS.gene64853:CDS |
| AAATAAATTGCATTTACATT+GGG | 0.381626 | 5.1:+14260913 | None:intergenic |
| AATTTGTCCAGGTATTTCTA+TGG | 0.383223 | 5.1:-14261087 | MS.gene64853:CDS |
| TGATGTCTTACTCCAATTGA+AGG | 0.390023 | 5.1:-14261860 | MS.gene64853:CDS |
| AACATCAGCTACATTAGTTT+GGG | 0.396147 | 5.1:-14261486 | MS.gene64853:CDS |
| TGTACTTTCTTCATTACTGC+AGG | 0.399504 | 5.1:+14261440 | None:intergenic |
| CTTGGCACAAGCAATGGATT+TGG | 0.400328 | 5.1:+14261308 | None:intergenic |
| TCAAGGGAGATGTGCACTAT+AGG | 0.409112 | 5.1:-14261281 | MS.gene64853:CDS |
| ATTATATTCCATTTATGGGT+TGG | 0.409477 | 5.1:-14262014 | MS.gene64853:CDS |
| TATTCTATATTCCATTGATT+GGG | 0.411713 | 5.1:-14261033 | MS.gene64853:CDS |
| GAAAGTCCTATAAATTTCCT+TGG | 0.420298 | 5.1:-14261149 | MS.gene64853:CDS |
| CAAATAAATTGCATTTACAT+TGG | 0.423232 | 5.1:+14260912 | None:intergenic |
| AGAAAGTACAACAAGAGATT+AGG | 0.442344 | 5.1:-14261427 | MS.gene64853:CDS |
| TTGCATTTACATTGGGACCT+TGG | 0.449956 | 5.1:+14260920 | None:intergenic |
| CACATCTCCCTTGACTCCCT+TGG | 0.458250 | 5.1:+14261290 | None:intergenic |
| TCACATAAAAGGGATCCTTA+TGG | 0.460531 | 5.1:-14261803 | MS.gene64853:intron |
| GACTCCCTTGGCACAAGCAA+TGG | 0.462033 | 5.1:+14261302 | None:intergenic |
| GGACTTTCTAAGAATCTCTC+TGG | 0.464370 | 5.1:+14261164 | None:intergenic |
| TTCTTGTGTTGAGCAATCCC+TGG | 0.472243 | 5.1:+14260963 | None:intergenic |
| CAAACTCATGCAACATTCCA+TGG | 0.474276 | 5.1:+14262067 | None:intergenic |
| GATGAACATTTGGATCCAAA+TGG | 0.475897 | 5.1:-14261913 | MS.gene64853:CDS |
| GGGAGGAGGTATGAGGATGA+AGG | 0.485420 | 5.1:-14262108 | MS.gene64853:CDS |
| AAATCCATTGCTTGTGCCAA+GGG | 0.486862 | 5.1:-14261306 | MS.gene64853:CDS |
| GGTTGGATTGATAAACTAAG+AGG | 0.489110 | 5.1:-14261997 | MS.gene64853:CDS |
| ATGTGGCAATTCCCAATCAA+TGG | 0.496258 | 5.1:+14261022 | None:intergenic |
| TGCTTGTGCCAAGGGAGTCA+AGG | 0.497929 | 5.1:-14261298 | MS.gene64853:CDS |
| TCGTCTTGATAGAAATTTCA+AGG | 0.500467 | 5.1:-14261965 | MS.gene64853:CDS |
| CAATAGTGTATGTGAATGCT+TGG | 0.505773 | 5.1:-14261235 | MS.gene64853:CDS |
| TGGAATGTTGCATGAGTTTG+AGG | 0.512073 | 5.1:-14262064 | MS.gene64853:CDS |
| GTACTTTCTTCATTACTGCA+GGG | 0.521457 | 5.1:+14261441 | None:intergenic |
| CAAATCCATTGCTTGTGCCA+AGG | 0.535799 | 5.1:-14261307 | MS.gene64853:CDS |
| TCATCTTTGCCTTATTGCCA+AGG | 0.541270 | 5.1:-14260937 | MS.gene64853:CDS |
| GGAGGAGGTATGAGGATGAA+GGG | 0.546637 | 5.1:-14262107 | MS.gene64853:CDS |
| ATTGCCACATGGGTTGGCTA+AGG | 0.549494 | 5.1:-14261009 | MS.gene64853:CDS |
| GCACAAGCAATGGATTTGGT+AGG | 0.557636 | 5.1:+14261312 | None:intergenic |
| AACAAAGAAAGCTGCCAACA+TGG | 0.561531 | 5.1:+14262041 | None:intergenic |
| TTGGGAATTGCCACATGGGT+TGG | 0.564911 | 5.1:-14261015 | MS.gene64853:CDS |
| GTAGATAGAAGTAAATTCCA+TGG | 0.568982 | 5.1:-14262084 | MS.gene64853:CDS |
| GTTGGATTGATAAACTAAGA+GGG | 0.569574 | 5.1:-14261996 | MS.gene64853:CDS |
| GCTTGTGCCAAGGGAGTCAA+GGG | 0.570906 | 5.1:-14261297 | MS.gene64853:CDS |
| AATTCTTCGTCCAGATCCAA+AGG | 0.585051 | 5.1:+14261106 | None:intergenic |
| ATTGATTGGGAATTGCCACA+TGG | 0.588027 | 5.1:-14261020 | MS.gene64853:CDS |
| ACAACAATTTACAAGTGAAG+AGG | 0.588981 | 5.1:-14261890 | MS.gene64853:CDS |
| TAAATTCAAAGTCTTGTCCA+AGG | 0.591328 | 5.1:+14261132 | None:intergenic |
| AATAGTGTATGTGAATGCTT+GGG | 0.599445 | 5.1:-14261234 | MS.gene64853:CDS |
| GCATGAGTTTGAGGCCATGT+TGG | 0.600473 | 5.1:-14262055 | MS.gene64853:CDS |
| TCTGGACGAAGAATTTGTCC+AGG | 0.606272 | 5.1:-14261098 | MS.gene64853:CDS |
| TTGATTGGGAATTGCCACAT+GGG | 0.608158 | 5.1:-14261019 | MS.gene64853:CDS |
| GATAAACTAAGAGGGTTGCA+TGG | 0.612774 | 5.1:-14261988 | MS.gene64853:CDS |
| GCAACTGCCATAGAAATACC+TGG | 0.615051 | 5.1:+14261080 | None:intergenic |
| GAGGAGGTATGAGGATGAAG+GGG | 0.621098 | 5.1:-14262106 | MS.gene64853:CDS |
| AGGGAGATGTGCACTATAGG+TGG | 0.629105 | 5.1:-14261278 | MS.gene64853:CDS |
| ATTCTTCGTCCAGATCCAAA+GGG | 0.634342 | 5.1:+14261107 | None:intergenic |
| TGGAATATAGAATATTAGCA+AGG | 0.641277 | 5.1:+14261042 | None:intergenic |
| TCTTCCTTAGCCAACCCATG+TGG | 0.720047 | 5.1:+14261005 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAGATAATTAAACAT+TGG | - | chr5.1:14261413-14261432 | MS.gene64853:CDS | 15.0% |
| !!! | TTAATCTTTGTTTTAGTTTT+TGG | - | chr5.1:14261291-14261310 | MS.gene64853:CDS | 15.0% |
| !! | AACTAAAACAAAGATTAAAG+TGG | + | chr5.1:14261289-14261308 | None:intergenic | 20.0% |
| !! | AATTAAAATAGCTTACCATA+AGG | + | chr5.1:14261259-14261278 | None:intergenic | 20.0% |
| !! | ATATTCTATATTCCATTGAT+TGG | - | chr5.1:14262010-14262029 | MS.gene64853:CDS | 20.0% |
| !! | ATGAAAATATAATCCTTGTT+GGG | + | chr5.1:14261331-14261350 | None:intergenic | 20.0% |
| !! | TCTGATTATATTCCATTTAT+GGG | - | chr5.1:14261026-14261045 | MS.gene64853:CDS | 20.0% |
| !! | TTCTGATTATATTCCATTTA+TGG | - | chr5.1:14261025-14261044 | MS.gene64853:CDS | 20.0% |
| !!! | TATTCTATATTCCATTGATT+GGG | - | chr5.1:14262011-14262030 | MS.gene64853:CDS | 20.0% |
| ! | ACAAAATTTCTCCTACTTAA+AGG | - | chr5.1:14261681-14261700 | MS.gene64853:intron | 25.0% |
| ! | AGAGATTATTGATGAACATT+TGG | - | chr5.1:14261121-14261140 | MS.gene64853:CDS | 25.0% |
| ! | ATTATATTCCATTTATGGGT+TGG | - | chr5.1:14261030-14261049 | MS.gene64853:CDS | 25.0% |
| ! | CATGAAAATATAATCCTTGT+TGG | + | chr5.1:14261332-14261351 | None:intergenic | 25.0% |
| ! | CATTATTATTTCCAAGTGTT+GGG | + | chr5.1:14261398-14261417 | None:intergenic | 25.0% |
| ! | CTTCAAAATATGATCAACTT+TGG | + | chr5.1:14261483-14261502 | None:intergenic | 25.0% |
| ! | TCATTATTATTTCCAAGTGT+TGG | + | chr5.1:14261399-14261418 | None:intergenic | 25.0% |
| ! | TGAAGATAATTAAACATTGG+TGG | - | chr5.1:14261416-14261435 | MS.gene64853:CDS | 25.0% |
| ! | TGGAATATAGAATATTAGCA+AGG | + | chr5.1:14262005-14262024 | None:intergenic | 25.0% |
| !!! | AGGAAGATATTGATTTTGAA+AGG | - | chr5.1:14262055-14262074 | MS.gene64853:CDS | 25.0% |
| !!! | ATCACTTTTGATCACATAAA+AGG | - | chr5.1:14261230-14261249 | MS.gene64853:CDS | 25.0% |
| !!! | TCACTTTTGATCACATAAAA+GGG | - | chr5.1:14261231-14261250 | MS.gene64853:CDS | 25.0% |
| AATAGTGTATGTGAATGCTT+GGG | - | chr5.1:14261810-14261829 | MS.gene64853:CDS | 30.0% | |
| ACAACAATTTACAAGTGAAG+AGG | - | chr5.1:14261154-14261173 | MS.gene64853:CDS | 30.0% | |
| CTTGTAAATTGTTGTCCATT+TGG | + | chr5.1:14261149-14261168 | None:intergenic | 30.0% | |
| GAAAGTCCTATAAATTTCCT+TGG | - | chr5.1:14261895-14261914 | MS.gene64853:CDS | 30.0% | |
| GACTTTGAATTTATTCCCTT+TGG | - | chr5.1:14261922-14261941 | MS.gene64853:CDS | 30.0% | |
| GTAGATAGAAGTAAATTCCA+TGG | - | chr5.1:14260960-14260979 | MS.gene64853:CDS | 30.0% | |
| GTTGGATTGATAAACTAAGA+GGG | - | chr5.1:14261048-14261067 | MS.gene64853:CDS | 30.0% | |
| TCGTCTTGATAGAAATTTCA+AGG | - | chr5.1:14261079-14261098 | MS.gene64853:CDS | 30.0% | |
| TCTTGTCCAAGGAAATTTAT+AGG | + | chr5.1:14261904-14261923 | None:intergenic | 30.0% | |
| TTATCAATCCAACCCATAAA+TGG | + | chr5.1:14261041-14261060 | None:intergenic | 30.0% | |
| TTCATAGAGACTTTGATGTT+TGG | - | chr5.1:14261836-14261855 | MS.gene64853:CDS | 30.0% | |
| ! | AACATCAGCTACATTAGTTT+GGG | - | chr5.1:14261558-14261577 | MS.gene64853:intron | 30.0% |
| ! | AATTTGTCCAGGTATTTCTA+TGG | - | chr5.1:14261957-14261976 | MS.gene64853:CDS | 30.0% |
| ! | AGAAAGTACAACAAGAGATT+AGG | - | chr5.1:14261617-14261636 | MS.gene64853:intron | 30.0% |
| ! | ATGAACGTTTTTCCTTCAAT+TGG | + | chr5.1:14261199-14261218 | None:intergenic | 30.0% |
| ! | TAAATTCAAAGTCTTGTCCA+AGG | + | chr5.1:14261915-14261934 | None:intergenic | 30.0% |
| ! | TTTTATGACTGCCTTTAAGT+AGG | + | chr5.1:14261695-14261714 | None:intergenic | 30.0% |
| !!! | TACTGCAGGGTTTTTTATTA+GGG | + | chr5.1:14261593-14261612 | None:intergenic | 30.0% |
| !!! | TTACTGCAGGGTTTTTTATT+AGG | + | chr5.1:14261594-14261613 | None:intergenic | 30.0% |
| ACACAAATAATCCCAACACT+TGG | - | chr5.1:14261384-14261403 | MS.gene64853:CDS | 35.0% | |
| ACATACACTATTGTCTTTGC+TGG | + | chr5.1:14261802-14261821 | None:intergenic | 35.0% | |
| CAACATCAGCTACATTAGTT+TGG | - | chr5.1:14261557-14261576 | MS.gene64853:intron | 35.0% | |
| CAATAGTGTATGTGAATGCT+TGG | - | chr5.1:14261809-14261828 | MS.gene64853:CDS | 35.0% | |
| GAATTTATTCCCTTTGGATC+TGG | - | chr5.1:14261928-14261947 | MS.gene64853:CDS | 35.0% | |
| GATGAACATTTGGATCCAAA+TGG | - | chr5.1:14261131-14261150 | MS.gene64853:CDS | 35.0% | |
| GGTTGGATTGATAAACTAAG+AGG | - | chr5.1:14261047-14261066 | MS.gene64853:CDS | 35.0% | |
| GTACTTTCTTCATTACTGCA+GGG | + | chr5.1:14261606-14261625 | None:intergenic | 35.0% | |
| TAACAGCTTAAATCCCAACA+AGG | - | chr5.1:14261315-14261334 | MS.gene64853:CDS | 35.0% | |
| TCACATAAAAGGGATCCTTA+TGG | - | chr5.1:14261241-14261260 | MS.gene64853:CDS | 35.0% | |
| TGATGTCTTACTCCAATTGA+AGG | - | chr5.1:14261184-14261203 | MS.gene64853:CDS | 35.0% | |
| TGTACTTTCTTCATTACTGC+AGG | + | chr5.1:14261607-14261626 | None:intergenic | 35.0% | |
| !! | ATTGATTTTGAAAGGTTGCC+AGG | - | chr5.1:14262063-14262082 | MS.gene64853:CDS | 35.0% |
| !! | TTGATTTTGAAAGGTTGCCA+GGG | - | chr5.1:14262064-14262083 | MS.gene64853:CDS | 35.0% |
| AAATCCATTGCTTGTGCCAA+GGG | - | chr5.1:14261738-14261757 | MS.gene64853:intron | 40.0% | |
| AACAAAGAAAGCTGCCAACA+TGG | + | chr5.1:14261006-14261025 | None:intergenic | 40.0% | |
| AATTCTTCGTCCAGATCCAA+AGG | + | chr5.1:14261941-14261960 | None:intergenic | 40.0% | |
| ATGTGGCAATTCCCAATCAA+TGG | + | chr5.1:14262025-14262044 | None:intergenic | 40.0% | |
| ATTCTTCGTCCAGATCCAAA+GGG | + | chr5.1:14261940-14261959 | None:intergenic | 40.0% | |
| ATTGATTGGGAATTGCCACA+TGG | - | chr5.1:14262024-14262043 | MS.gene64853:CDS | 40.0% | |
| CAAACTCATGCAACATTCCA+TGG | + | chr5.1:14260980-14260999 | None:intergenic | 40.0% | |
| CTCTCTGGATAAAACTCTTC+TGG | + | chr5.1:14261868-14261887 | None:intergenic | 40.0% | |
| GATAAACTAAGAGGGTTGCA+TGG | - | chr5.1:14261056-14261075 | MS.gene64853:CDS | 40.0% | |
| TGGAATGTTGCATGAGTTTG+AGG | - | chr5.1:14260980-14260999 | MS.gene64853:CDS | 40.0% | |
| TTCTATGGCAGTTGCATCAT+TGG | - | chr5.1:14261972-14261991 | MS.gene64853:CDS | 40.0% | |
| TTGATTGGGAATTGCCACAT+GGG | - | chr5.1:14262025-14262044 | MS.gene64853:CDS | 40.0% | |
| ! | GGACTTTCTAAGAATCTCTC+TGG | + | chr5.1:14261883-14261902 | None:intergenic | 40.0% |
| ! | TCATCTTTGCCTTATTGCCA+AGG | - | chr5.1:14262107-14262126 | MS.gene64853:CDS | 40.0% |
| ACATTGGGACCTTGGCAATA+AGG | + | chr5.1:14262119-14262138 | None:intergenic | 45.0% | |
| ATTGCCAAGGTCCCAATGTA+AGG | - | chr5.1:14262120-14262139 | MS.gene64853:CDS | 45.0% | |
| CAAATCCATTGCTTGTGCCA+AGG | - | chr5.1:14261737-14261756 | MS.gene64853:intron | 45.0% | |
| GCAACTGCCATAGAAATACC+TGG | + | chr5.1:14261967-14261986 | None:intergenic | 45.0% | |
| TCAAGGGAGATGTGCACTAT+AGG | - | chr5.1:14261763-14261782 | MS.gene64853:intron | 45.0% | |
| TCTGGACGAAGAATTTGTCC+AGG | - | chr5.1:14261946-14261965 | MS.gene64853:CDS | 45.0% | |
| TTCTTGTGTTGAGCAATCCC+TGG | + | chr5.1:14262084-14262103 | None:intergenic | 45.0% | |
| ! | CTTGGCACAAGCAATGGATT+TGG | + | chr5.1:14261739-14261758 | None:intergenic | 45.0% |
| ! | GCACAAGCAATGGATTTGGT+AGG | + | chr5.1:14261735-14261754 | None:intergenic | 45.0% |
| AGGGAGATGTGCACTATAGG+TGG | - | chr5.1:14261766-14261785 | MS.gene64853:intron | 50.0% | |
| TCTTCCTTAGCCAACCCATG+TGG | + | chr5.1:14262042-14262061 | None:intergenic | 50.0% | |
| TTGGGAATTGCCACATGGGT+TGG | - | chr5.1:14262029-14262048 | MS.gene64853:CDS | 50.0% | |
| ! | GAGGAGGTATGAGGATGAAG+GGG | - | chr5.1:14260938-14260957 | MS.gene64853:CDS | 50.0% |
| ! | GCATGAGTTTGAGGCCATGT+TGG | - | chr5.1:14260989-14261008 | MS.gene64853:CDS | 50.0% |
| ! | GGAGGAGGTATGAGGATGAA+GGG | - | chr5.1:14260937-14260956 | MS.gene64853:CDS | 50.0% |
| !! | ATTGCCACATGGGTTGGCTA+AGG | - | chr5.1:14262035-14262054 | MS.gene64853:CDS | 50.0% |
| !! | TGCTTTTGGGAGGAGGTATG+AGG | - | chr5.1:14260929-14260948 | MS.gene64853:CDS | 50.0% |
| CACATCTCCCTTGACTCCCT+TGG | + | chr5.1:14261757-14261776 | None:intergenic | 55.0% | |
| GACTCCCTTGGCACAAGCAA+TGG | + | chr5.1:14261745-14261764 | None:intergenic | 55.0% | |
| GCTTGTGCCAAGGGAGTCAA+GGG | - | chr5.1:14261747-14261766 | MS.gene64853:intron | 55.0% | |
| TGCTTGTGCCAAGGGAGTCA+AGG | - | chr5.1:14261746-14261765 | MS.gene64853:intron | 55.0% | |
| ! | GGGAGGAGGTATGAGGATGA+AGG | - | chr5.1:14260936-14260955 | MS.gene64853:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 14260926 | 14262140 | 14260926 | ID=MS.gene64853 |
| chr5.1 | mRNA | 14260926 | 14262140 | 14260926 | ID=MS.gene64853.t1;Parent=MS.gene64853 |
| chr5.1 | exon | 14261804 | 14262140 | 14261804 | ID=MS.gene64853.t1.exon1;Parent=MS.gene64853.t1 |
| chr5.1 | CDS | 14261804 | 14262140 | 14261804 | ID=cds.MS.gene64853.t1;Parent=MS.gene64853.t1 |
| chr5.1 | exon | 14260926 | 14261534 | 14260926 | ID=MS.gene64853.t1.exon2;Parent=MS.gene64853.t1 |
| chr5.1 | CDS | 14260926 | 14261534 | 14260926 | ID=cds.MS.gene64853.t1;Parent=MS.gene64853.t1 |
| Gene Sequence |
| Protein sequence |
