Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65140.t1 | XP_013448803.1 | 96.4 | 84 | 3 | 0 | 2 | 85 | 91 | 174 | 3.00E-34 | 154.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65140.t1 | A0A072UAI2 | 96.4 | 84 | 3 | 0 | 2 | 85 | 91 | 174 | 2.1e-34 | 154.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene65140 | 0.818424 | 1.97E-52 | -1.69E-46 |
MS.gene049488 | MS.gene65140 | 0.822702 | 2.06E-53 | -1.69E-46 |
MS.gene049609 | MS.gene65140 | 0.810766 | 9.79E-51 | -1.69E-46 |
MS.gene049805 | MS.gene65140 | 0.814026 | 1.90E-51 | -1.69E-46 |
MS.gene050593 | MS.gene65140 | 0.818095 | 2.34E-52 | -1.69E-46 |
MS.gene050670 | MS.gene65140 | 0.829979 | 3.80E-55 | -1.69E-46 |
MS.gene050772 | MS.gene65140 | 0.806627 | 7.51E-50 | -1.69E-46 |
MS.gene05105 | MS.gene65140 | 0.823015 | 1.74E-53 | -1.69E-46 |
MS.gene051387 | MS.gene65140 | 0.804601 | 2.00E-49 | -1.69E-46 |
MS.gene051525 | MS.gene65140 | 0.805327 | 1.41E-49 | -1.69E-46 |
MS.gene051666 | MS.gene65140 | 0.800704 | 1.27E-48 | -1.69E-46 |
MS.gene052136 | MS.gene65140 | 0.80163 | 8.22E-49 | -1.69E-46 |
MS.gene052253 | MS.gene65140 | 0.80524 | 1.47E-49 | -1.69E-46 |
MS.gene052346 | MS.gene65140 | 0.804625 | 1.98E-49 | -1.69E-46 |
MS.gene052414 | MS.gene65140 | 0.809673 | 1.68E-50 | -1.69E-46 |
MS.gene052421 | MS.gene65140 | 0.808385 | 3.18E-50 | -1.69E-46 |
MS.gene052481 | MS.gene65140 | 0.810288 | 1.24E-50 | -1.69E-46 |
MS.gene052505 | MS.gene65140 | 0.810049 | 1.40E-50 | -1.69E-46 |
MS.gene052982 | MS.gene65140 | 0.831657 | 1.47E-55 | -1.69E-46 |
MS.gene053449 | MS.gene65140 | 0.829866 | 4.05E-55 | -1.69E-46 |
MS.gene053912 | MS.gene65140 | 0.816393 | 5.66E-52 | -1.69E-46 |
MS.gene05505 | MS.gene65140 | 0.802648 | 5.08E-49 | -1.69E-46 |
MS.gene055116 | MS.gene65140 | 0.801764 | 7.72E-49 | -1.69E-46 |
MS.gene056511 | MS.gene65140 | 0.806397 | 8.39E-50 | -1.69E-46 |
MS.gene05664 | MS.gene65140 | 0.804338 | 2.27E-49 | -1.69E-46 |
MS.gene057124 | MS.gene65140 | 0.809654 | 1.70E-50 | -1.69E-46 |
MS.gene057823 | MS.gene65140 | 0.8138 | 2.13E-51 | -1.69E-46 |
MS.gene058838 | MS.gene65140 | 0.807971 | 3.89E-50 | -1.69E-46 |
MS.gene060403 | MS.gene65140 | 0.810196 | 1.30E-50 | -1.69E-46 |
MS.gene060837 | MS.gene65140 | 0.802412 | 5.68E-49 | -1.69E-46 |
MS.gene061154 | MS.gene65140 | 0.808078 | 3.70E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65140.t1 | MTR_7g059255 | 96.429 | 84 | 3 | 0 | 2 | 85 | 91 | 174 | 5.95e-54 | 165 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65140.t1 | AT4G13220 | 59.302 | 86 | 33 | 1 | 2 | 85 | 91 | 176 | 2.54e-29 | 103 |
Find 22 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTACAGCTTTCTTTATTT+TGG | 0.099548 | 7.1:+42230190 | MS.gene65140:CDS |
GTTACTGAAATCCTTGCTAT+TGG | 0.328579 | 7.1:-42230122 | None:intergenic |
ATCCTTTGGAAGAGGCTAAT+AGG | 0.388720 | 7.1:+42231038 | MS.gene65140:CDS |
CTTGATCTTTATTGAATGCT+AGG | 0.393502 | 7.1:-42230970 | None:intergenic |
GAAATCCTTGCTATTGGTCT+TGG | 0.422289 | 7.1:-42230116 | None:intergenic |
CAAAGGATCATCCATAGGTT+TGG | 0.442636 | 7.1:-42231023 | None:intergenic |
CAAACCTATGGATGATCCTT+TGG | 0.442745 | 7.1:+42231024 | MS.gene65140:CDS |
GGAAGAGGCTAATAGGATAA+TGG | 0.446378 | 7.1:+42231045 | MS.gene65140:CDS |
CAAGAACCACCTAGCGGGAA+TGG | 0.467436 | 7.1:+42230989 | MS.gene65140:CDS |
GTTTGTTCATAGGCTACCAT+AGG | 0.522734 | 7.1:+42230929 | MS.gene65140:intron |
AGGAACTACGACCAAACCTA+TGG | 0.545163 | 7.1:+42231012 | MS.gene65140:CDS |
TGCAAAGTATGCAAGTCCTA+TGG | 0.552339 | 7.1:-42230945 | None:intergenic |
AAGATCAAGAACCACCTAGC+GGG | 0.560815 | 7.1:+42230984 | MS.gene65140:CDS |
ATCCTATTAGCCTCTTCCAA+AGG | 0.564567 | 7.1:-42231040 | None:intergenic |
TATGGATGATCCTTTGGAAG+AGG | 0.564870 | 7.1:+42231030 | MS.gene65140:CDS |
GTAGTTCCTCCATTCCCGCT+AGG | 0.572693 | 7.1:-42230998 | None:intergenic |
TCTTCCAAAGGATCATCCAT+AGG | 0.581655 | 7.1:-42231028 | None:intergenic |
AAATAAAGAAAGCTGTAGAG+AGG | 0.616626 | 7.1:-42230187 | None:intergenic |
GTTCCTCCATTCCCGCTAGG+TGG | 0.621366 | 7.1:-42230995 | None:intergenic |
GAACCACCTAGCGGGAATGG+AGG | 0.633606 | 7.1:+42230992 | MS.gene65140:CDS |
CTGTACCAAGACCAATAGCA+AGG | 0.633937 | 7.1:+42230111 | MS.gene65140:CDS |
AAAGATCAAGAACCACCTAG+CGG | 0.725332 | 7.1:+42230983 | MS.gene65140:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAATATGATATGAAAAA+TGG | - | chr7.1:42230224-42230243 | None:intergenic | 10.0% |
!!! | TCATTTTTTTATTATCTTTG+TGG | + | chr7.1:42229712-42229731 | MS.gene65140:intron | 15.0% |
!! | AATAAAACCTTAATCATACA+TGG | - | chr7.1:42229308-42229327 | None:intergenic | 20.0% |
!! | AATAGTTGAGACTTATTTAT+AGG | - | chr7.1:42230383-42230402 | None:intergenic | 20.0% |
!! | ATAGTTGAGACTTATTTATA+GGG | - | chr7.1:42230382-42230401 | None:intergenic | 20.0% |
!! | ATATATACTGTTATGAATCA+TGG | - | chr7.1:42230529-42230548 | None:intergenic | 20.0% |
!! | TTCCCTTTAATAACATAATA+TGG | - | chr7.1:42230590-42230609 | None:intergenic | 20.0% |
!!! | AATTTTATGTCCTTCATAAT+TGG | + | chr7.1:42229624-42229643 | MS.gene65140:intron | 20.0% |
!!! | ATTTTATGTCCTTCATAATT+GGG | + | chr7.1:42229625-42229644 | MS.gene65140:intron | 20.0% |
!!! | TGTATGATTAAGGTTTTATT+TGG | + | chr7.1:42229308-42229327 | MS.gene65140:intron | 20.0% |
! | AAAAAATTCAACCCTACAAA+AGG | - | chr7.1:42230642-42230661 | None:intergenic | 25.0% |
! | AAAAATTCAACCCTACAAAA+GGG | - | chr7.1:42230641-42230660 | None:intergenic | 25.0% |
! | AAAATGAAAGAGCAATAGTT+AGG | - | chr7.1:42229699-42229718 | None:intergenic | 25.0% |
! | ATAGTGAATAAACCATAGTT+AGG | + | chr7.1:42230294-42230313 | MS.gene65140:intron | 25.0% |
! | GGCCATATTATGTTATTAAA+GGG | + | chr7.1:42230585-42230604 | MS.gene65140:intron | 25.0% |
! | GTAAAAAACTTGAAAACAAC+AGG | - | chr7.1:42230022-42230041 | None:intergenic | 25.0% |
! | GTTAGGTTATATGTAAACTA+TGG | + | chr7.1:42230311-42230330 | MS.gene65140:intron | 25.0% |
! | GTTTACATATAACCTAACTA+TGG | - | chr7.1:42230309-42230328 | None:intergenic | 25.0% |
! | TAGTTGAGACTTATTTATAG+GGG | - | chr7.1:42230381-42230400 | None:intergenic | 25.0% |
! | TGGCCATATTATGTTATTAA+AGG | + | chr7.1:42230584-42230603 | MS.gene65140:intron | 25.0% |
! | TTGTACTAAATCACTTATTG+CGG | - | chr7.1:42229898-42229917 | None:intergenic | 25.0% |
!! | GCTAATTATGCTATATTTTG+TGG | + | chr7.1:42230890-42230909 | MS.gene65140:intron | 25.0% |
!! | TTAAGTTGTTTATCCAAACA+CGG | + | chr7.1:42229559-42229578 | MS.gene65140:intron | 25.0% |
!!! | CTTATTTTCATTAGTTCTCT+AGG | + | chr7.1:42229429-42229448 | MS.gene65140:intron | 25.0% |
!!! | TACAAAGTATTGTCAAACAA+CGG | + | chr7.1:42230744-42230763 | MS.gene65140:intron | 25.0% |
AAAATTCAACCCTACAAAAG+GGG | - | chr7.1:42230640-42230659 | None:intergenic | 30.0% | |
AAATAAAGAAAGCTGTAGAG+AGG | - | chr7.1:42230190-42230209 | None:intergenic | 30.0% | |
AAATGGTAATTGTGACTTAC+AGG | - | chr7.1:42229808-42229827 | None:intergenic | 30.0% | |
AATGGTAATTGTGACTTACA+GGG | - | chr7.1:42229807-42229826 | None:intergenic | 30.0% | |
ATATTTGTGCTATATGGTAG+CGG | + | chr7.1:42229849-42229868 | MS.gene65140:intron | 30.0% | |
ATCCTAAAGTCTTAACCATT+GGG | - | chr7.1:42230847-42230866 | None:intergenic | 30.0% | |
CAAAAGACAAAGCAATTATC+AGG | - | chr7.1:42229197-42229216 | None:intergenic | 30.0% | |
CAAGTACATTGTTTGTTCAT+AGG | + | chr7.1:42230919-42230938 | MS.gene65140:intron | 30.0% | |
CTTGATCTTTATTGAATGCT+AGG | - | chr7.1:42230973-42230992 | None:intergenic | 30.0% | |
GAAAACACCATGTATGATTA+AGG | + | chr7.1:42229298-42229317 | MS.gene65140:intron | 30.0% | |
GAGAAACATGAAAAACTAGA+AGG | - | chr7.1:42230058-42230077 | None:intergenic | 30.0% | |
TAAGTCACAATTACCATTTC+CGG | + | chr7.1:42229809-42229828 | MS.gene65140:intron | 30.0% | |
TAGCAGATATTTGTGCTATA+TGG | + | chr7.1:42229843-42229862 | MS.gene65140:intron | 30.0% | |
TATCCTAAAGTCTTAACCAT+TGG | - | chr7.1:42230848-42230867 | None:intergenic | 30.0% | |
TTAAGTGTTCCCAATTATGA+AGG | - | chr7.1:42229637-42229656 | None:intergenic | 30.0% | |
TTCATTGTTCAACAAGTCTT+AGG | - | chr7.1:42229585-42229604 | None:intergenic | 30.0% | |
! | AAGGATTTCAGTAACTTTTG+TGG | + | chr7.1:42230130-42230149 | MS.gene65140:CDS | 30.0% |
! | CTATGGTTAGTTAGTTAGTT+AGG | + | chr7.1:42230328-42230347 | MS.gene65140:intron | 30.0% |
! | CTGATAATTGCTTTGTCTTT+TGG | + | chr7.1:42229195-42229214 | MS.gene65140:intron | 30.0% |
! | TCTTAAAGTGCTTACATCAT+TGG | - | chr7.1:42229354-42229373 | None:intergenic | 30.0% |
! | TGGTGTTTTCCTTTCAAAAT+AGG | - | chr7.1:42229288-42229307 | None:intergenic | 30.0% |
!! | CTCTACAGCTTTCTTTATTT+TGG | + | chr7.1:42230190-42230209 | MS.gene65140:CDS | 30.0% |
!! | TGTCTTTTGGAAATTCATGT+GGG | + | chr7.1:42229208-42229227 | MS.gene65140:intron | 30.0% |
!! | TTGTCTTTTGGAAATTCATG+TGG | + | chr7.1:42229207-42229226 | MS.gene65140:intron | 30.0% |
AAGTCACAATTACCATTTCC+GGG | + | chr7.1:42229810-42229829 | MS.gene65140:intron | 35.0% | |
ACATGAATGAACATGGCAAT+TGG | - | chr7.1:42230562-42230581 | None:intergenic | 35.0% | |
ACTCTACTATGAGTCACTAT+GGG | + | chr7.1:42230436-42230455 | MS.gene65140:intron | 35.0% | |
ATAGCATAGGTGTATTCATG+TGG | - | chr7.1:42230468-42230487 | None:intergenic | 35.0% | |
ATCAGCAAGAAAGATAGCAT+AGG | - | chr7.1:42230481-42230500 | None:intergenic | 35.0% | |
ATCATTATGACCTTTATCCC+TGG | + | chr7.1:42230499-42230518 | MS.gene65140:intron | 35.0% | |
ATTGACAACAAGTTTCCCAA+TGG | + | chr7.1:42230829-42230848 | MS.gene65140:intron | 35.0% | |
GAGTTTATGCATTTGTGATG+AGG | + | chr7.1:42229259-42229278 | MS.gene65140:intron | 35.0% | |
TACTCTACTATGAGTCACTA+TGG | + | chr7.1:42230435-42230454 | MS.gene65140:intron | 35.0% | |
TAGCATAGGTGTATTCATGT+GGG | - | chr7.1:42230467-42230486 | None:intergenic | 35.0% | |
TCATTATGACCTTTATCCCT+GGG | + | chr7.1:42230500-42230519 | MS.gene65140:intron | 35.0% | |
TCTAGCATCAGCAAAAAGAA+GGG | - | chr7.1:42230088-42230107 | None:intergenic | 35.0% | |
TTATGAATCATGGAATCCCA+GGG | - | chr7.1:42230519-42230538 | None:intergenic | 35.0% | |
TTCCCAATGGTTAAGACTTT+AGG | + | chr7.1:42230842-42230861 | MS.gene65140:intron | 35.0% | |
TTCTAGCATCAGCAAAAAGA+AGG | - | chr7.1:42230089-42230108 | None:intergenic | 35.0% | |
! | ATATGTCTTTCCCCTTTTGT+AGG | + | chr7.1:42230627-42230646 | MS.gene65140:intron | 35.0% |
! | GTTACTGAAATCCTTGCTAT+TGG | - | chr7.1:42230125-42230144 | None:intergenic | 35.0% |
! | TACAAAGTCTTGTCGAATAG+TGG | + | chr7.1:42229913-42229932 | MS.gene65140:intron | 35.0% |
! | TATGTCTTTCCCCTTTTGTA+GGG | + | chr7.1:42230628-42230647 | MS.gene65140:intron | 35.0% |
!! | ATGAGGCATCCTATTTTGAA+AGG | + | chr7.1:42229276-42229295 | MS.gene65140:intron | 35.0% |
!! | GGGAAACTTGTTGTCAATTA+CGG | - | chr7.1:42230827-42230846 | None:intergenic | 35.0% |
!! | GTAAGCACTTTAAGACTGTT+TGG | + | chr7.1:42229359-42229378 | MS.gene65140:intron | 35.0% |
AAAGATCAAGAACCACCTAG+CGG | + | chr7.1:42230983-42231002 | MS.gene65140:CDS | 40.0% | |
AGAGCAATAGTTAGGCTTTC+TGG | - | chr7.1:42229691-42229710 | None:intergenic | 40.0% | |
ATCACTTATTGCGGAACAAC+AGG | - | chr7.1:42229889-42229908 | None:intergenic | 40.0% | |
CAAACCTATGGATGATCCTT+TGG | + | chr7.1:42231024-42231043 | MS.gene65140:CDS | 40.0% | |
CAAAGGATCATCCATAGGTT+TGG | - | chr7.1:42231026-42231045 | None:intergenic | 40.0% | |
GGAAGAGGCTAATAGGATAA+TGG | + | chr7.1:42231045-42231064 | MS.gene65140:CDS | 40.0% | |
GTTATGAATCATGGAATCCC+AGG | - | chr7.1:42230520-42230539 | None:intergenic | 40.0% | |
GTTTGTTCATAGGCTACCAT+AGG | + | chr7.1:42230929-42230948 | MS.gene65140:intron | 40.0% | |
TATTTGACAATGCCCGGAAA+TGG | - | chr7.1:42229825-42229844 | None:intergenic | 40.0% | |
TCGAATAGTGGCTATAACAG+TGG | + | chr7.1:42229925-42229944 | MS.gene65140:intron | 40.0% | |
TCTTCCAAAGGATCATCCAT+AGG | - | chr7.1:42231031-42231050 | None:intergenic | 40.0% | |
TGCAAAGTATGCAAGTCCTA+TGG | - | chr7.1:42230948-42230967 | None:intergenic | 40.0% | |
TGCCATGTTCATTCATGTAC+TGG | + | chr7.1:42230564-42230583 | MS.gene65140:intron | 40.0% | |
! | AGATAGTTCTGCAGAATGCA+TGG | + | chr7.1:42229740-42229759 | MS.gene65140:intron | 40.0% |
! | ATAGCTGCTGTTTGAAACAG+TGG | - | chr7.1:42230675-42230694 | None:intergenic | 40.0% |
! | ATCCTATTAGCCTCTTCCAA+AGG | - | chr7.1:42231043-42231062 | None:intergenic | 40.0% |
! | ATCCTTTGGAAGAGGCTAAT+AGG | + | chr7.1:42231038-42231057 | MS.gene65140:CDS | 40.0% |
! | ATCTGCTATTTGACAATGCC+CGG | - | chr7.1:42229831-42229850 | None:intergenic | 40.0% |
! | TATGGATGATCCTTTGGAAG+AGG | + | chr7.1:42231030-42231049 | MS.gene65140:CDS | 40.0% |
!! | GAAATCCTTGCTATTGGTCT+TGG | - | chr7.1:42230119-42230138 | None:intergenic | 40.0% |
!!! | ACAGGCAGTTTTTTCAATCG+CGG | - | chr7.1:42230004-42230023 | None:intergenic | 40.0% |
AACAAGTCTTAGGCCGTGTT+TGG | - | chr7.1:42229575-42229594 | None:intergenic | 45.0% | |
AAGATCAAGAACCACCTAGC+GGG | + | chr7.1:42230984-42231003 | MS.gene65140:CDS | 45.0% | |
AGGAACTACGACCAAACCTA+TGG | + | chr7.1:42231012-42231031 | MS.gene65140:CDS | 45.0% | |
CAATCGCGGATCACAGAAAA+TGG | - | chr7.1:42229990-42230009 | None:intergenic | 45.0% | |
CTGTACCAAGACCAATAGCA+AGG | + | chr7.1:42230111-42230130 | MS.gene65140:CDS | 45.0% | |
GGCCAGTACATGAATGAACA+TGG | - | chr7.1:42230569-42230588 | None:intergenic | 45.0% | |
GGTAAGGATGGAATTGATGC+AGG | + | chr7.1:42229769-42229788 | MS.gene65140:intron | 45.0% | |
GTTATAGCACTGCAGTGTAG+CGG | + | chr7.1:42229949-42229968 | MS.gene65140:intron | 45.0% | |
TCATGGAATCCCAGGGATAA+AGG | - | chr7.1:42230512-42230531 | None:intergenic | 45.0% | |
!! | GAATGCATGGAGAGTTGGTA+AGG | + | chr7.1:42229753-42229772 | MS.gene65140:intron | 45.0% |
CTGCAGAATGCATGGAGAGT+TGG | + | chr7.1:42229748-42229767 | MS.gene65140:intron | 50.0% | |
!! | GCATGGAGAGTTGGTAAGGA+TGG | + | chr7.1:42229757-42229776 | MS.gene65140:intron | 50.0% |
CAAGAACCACCTAGCGGGAA+TGG | + | chr7.1:42230989-42231008 | MS.gene65140:CDS | 55.0% | |
GTAGTTCCTCCATTCCCGCT+AGG | - | chr7.1:42231001-42231020 | None:intergenic | 55.0% | |
GAACCACCTAGCGGGAATGG+AGG | + | chr7.1:42230992-42231011 | MS.gene65140:CDS | 60.0% | |
GTTCCTCCATTCCCGCTAGG+TGG | - | chr7.1:42230998-42231017 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 42229169 | 42231081 | 42229169 | ID=MS.gene65140 |
chr7.1 | mRNA | 42229169 | 42231081 | 42229169 | ID=MS.gene65140.t1;Parent=MS.gene65140 |
chr7.1 | exon | 42229169 | 42229180 | 42229169 | ID=MS.gene65140.t1.exon1;Parent=MS.gene65140.t1 |
chr7.1 | CDS | 42229169 | 42229180 | 42229169 | ID=cds.MS.gene65140.t1;Parent=MS.gene65140.t1 |
chr7.1 | exon | 42230107 | 42230211 | 42230107 | ID=MS.gene65140.t1.exon2;Parent=MS.gene65140.t1 |
chr7.1 | CDS | 42230107 | 42230211 | 42230107 | ID=cds.MS.gene65140.t1;Parent=MS.gene65140.t1 |
chr7.1 | exon | 42230941 | 42231081 | 42230941 | ID=MS.gene65140.t1.exon3;Parent=MS.gene65140.t1 |
chr7.1 | CDS | 42230941 | 42231081 | 42230941 | ID=cds.MS.gene65140.t1;Parent=MS.gene65140.t1 |
Gene Sequence |
Protein sequence |