Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65500.t1 | XP_003590039.1 | 88.9 | 532 | 6 | 1 | 1 | 479 | 1 | 532 | 1.20E-260 | 908.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65500.t1 | O48639 | 72.1 | 516 | 89 | 3 | 4 | 466 | 5 | 518 | 1.1e-203 | 710.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65500.t1 | G7I5D0 | 88.9 | 532 | 6 | 1 | 1 | 479 | 1 | 532 | 8.4e-261 | 908.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene65500 | 0.827405 | 1.59E-54 | -1.69E-46 |
| MS.gene049634 | MS.gene65500 | 0.804783 | 1.83E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene65500 | 0.826399 | 2.77E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene65500 | 0.83022 | 3.32E-55 | -1.69E-46 |
| MS.gene050380 | MS.gene65500 | 0.805772 | 1.14E-49 | -1.69E-46 |
| MS.gene050647 | MS.gene65500 | 0.810833 | 9.47E-51 | -1.69E-46 |
| MS.gene050720 | MS.gene65500 | 0.820237 | 7.63E-53 | -1.69E-46 |
| MS.gene051844 | MS.gene65500 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene65500 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene052211 | MS.gene65500 | 0.842598 | 2.35E-58 | -1.69E-46 |
| MS.gene05240 | MS.gene65500 | 0.808971 | 2.38E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene65500 | 0.816096 | 6.60E-52 | -1.69E-46 |
| MS.gene053031 | MS.gene65500 | 0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene65500 | 0.857763 | 1.31E-62 | -1.69E-46 |
| MS.gene053406 | MS.gene65500 | 0.936914 | 8.09E-98 | -1.69E-46 |
| MS.gene054146 | MS.gene65500 | 0.826864 | 2.15E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene65500 | 0.818273 | 2.14E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene65500 | 0.801836 | 7.46E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene65500 | 0.823788 | 1.15E-53 | -1.69E-46 |
| MS.gene057770 | MS.gene65500 | 0.809734 | 1.63E-50 | -1.69E-46 |
| MS.gene058218 | MS.gene65500 | 0.803485 | 3.41E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene65500 | 0.810389 | 1.18E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene65500 | 0.820682 | 6.03E-53 | -1.69E-46 |
| MS.gene060593 | MS.gene65500 | 0.801084 | 1.06E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65500.t1 | MTR_1g043220 | 88.910 | 532 | 6 | 1 | 1 | 479 | 1 | 532 | 0.0 | 947 |
| MS.gene65500.t1 | MTR_1g043290 | 88.555 | 533 | 8 | 1 | 1 | 480 | 1 | 533 | 0.0 | 946 |
| MS.gene65500.t1 | MTR_1g043200 | 88.368 | 533 | 9 | 1 | 1 | 480 | 1 | 533 | 0.0 | 946 |
| MS.gene65500.t1 | MTR_1g074930 | 76.471 | 527 | 71 | 1 | 1 | 474 | 1 | 527 | 0.0 | 825 |
| MS.gene65500.t1 | MTR_3g082700 | 69.291 | 508 | 102 | 2 | 4 | 458 | 5 | 511 | 0.0 | 725 |
| MS.gene65500.t1 | MTR_1g069935 | 66.985 | 524 | 116 | 3 | 4 | 474 | 5 | 524 | 0.0 | 701 |
| MS.gene65500.t1 | MTR_7g096870 | 66.541 | 529 | 120 | 3 | 4 | 479 | 5 | 529 | 0.0 | 687 |
| MS.gene65500.t1 | MTR_7g096880 | 67.717 | 508 | 105 | 3 | 4 | 458 | 5 | 506 | 0.0 | 671 |
| MS.gene65500.t1 | MTR_1g074940 | 66.928 | 511 | 98 | 5 | 4 | 458 | 5 | 500 | 0.0 | 670 |
| MS.gene65500.t1 | MTR_1g069930 | 60.506 | 514 | 147 | 3 | 4 | 464 | 5 | 515 | 0.0 | 627 |
| MS.gene65500.t1 | MTR_1g028600 | 53.220 | 528 | 179 | 6 | 5 | 479 | 3 | 515 | 0.0 | 523 |
| MS.gene65500.t1 | MTR_5g068140 | 50.459 | 545 | 190 | 7 | 1 | 475 | 1 | 535 | 1.46e-176 | 507 |
| MS.gene65500.t1 | MTR_4g083960 | 47.753 | 534 | 200 | 14 | 1 | 475 | 1 | 514 | 6.24e-151 | 440 |
| MS.gene65500.t1 | MTR_7g005910 | 23.232 | 396 | 239 | 17 | 81 | 461 | 130 | 475 | 7.26e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65500.t1 | AT5G43360 | 72.093 | 516 | 89 | 3 | 4 | 466 | 5 | 518 | 0.0 | 736 |
| MS.gene65500.t1 | AT5G43350 | 71.318 | 516 | 93 | 3 | 4 | 466 | 5 | 518 | 0.0 | 732 |
| MS.gene65500.t1 | AT3G54700 | 71.512 | 516 | 89 | 3 | 4 | 466 | 5 | 515 | 0.0 | 729 |
| MS.gene65500.t1 | AT3G54700 | 71.512 | 516 | 89 | 3 | 4 | 466 | 5 | 515 | 0.0 | 729 |
| MS.gene65500.t1 | AT2G38940 | 68.616 | 513 | 107 | 2 | 4 | 463 | 5 | 516 | 0.0 | 712 |
| MS.gene65500.t1 | AT2G32830 | 68.677 | 514 | 106 | 3 | 7 | 466 | 8 | 520 | 0.0 | 711 |
| MS.gene65500.t1 | AT5G43370 | 70.930 | 516 | 95 | 3 | 4 | 466 | 5 | 518 | 0.0 | 698 |
| MS.gene65500.t1 | AT5G43370 | 70.930 | 516 | 95 | 3 | 4 | 466 | 5 | 518 | 0.0 | 698 |
| MS.gene65500.t1 | AT5G43340 | 57.500 | 520 | 149 | 5 | 7 | 471 | 9 | 511 | 0.0 | 589 |
| MS.gene65500.t1 | AT1G76430 | 43.454 | 527 | 230 | 13 | 4 | 473 | 3 | 518 | 1.32e-133 | 397 |
| MS.gene65500.t1 | AT1G20860 | 43.893 | 524 | 233 | 11 | 5 | 476 | 3 | 517 | 4.40e-130 | 388 |
| MS.gene65500.t1 | AT1G20860 | 43.893 | 524 | 233 | 11 | 5 | 476 | 55 | 569 | 1.26e-129 | 388 |
| MS.gene65500.t1 | AT4G08878 | 48.659 | 261 | 78 | 3 | 30 | 237 | 13 | 270 | 2.31e-68 | 220 |
| MS.gene65500.t1 | AT4G08895 | 55.714 | 140 | 30 | 1 | 268 | 407 | 23 | 130 | 1.95e-47 | 161 |
Find 104 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTGCATTAACTTATTAT+TGG | 0.168469 | 1.3:+25901942 | MS.gene65500:CDS |
| ACATTCTTCTTTGCTAATTT+TGG | 0.173620 | 1.3:+25902505 | MS.gene65500:CDS |
| GCTGTGTAACGGGCTGTTTC+TGG | 0.206707 | 1.3:-25901977 | None:intergenic |
| GGCAGCTTGTTTCGCGTTCT+TGG | 0.212885 | 1.3:-25902008 | None:intergenic |
| GCAGTACTGTTCCGGGTTAC+TGG | 0.238649 | 1.3:+25902329 | MS.gene65500:CDS |
| TGCGCTGTGCAGTACTGTTC+CGG | 0.249470 | 1.3:+25902321 | MS.gene65500:CDS |
| CGACATGGTTGGGCTTTGTT+TGG | 0.253345 | 1.3:+25902145 | MS.gene65500:CDS |
| TATATTTGATCACAAATATA+AGG | 0.273690 | 1.3:+25901829 | MS.gene65500:CDS |
| GCACTTGGTGGAAGTGTTCC+TGG | 0.285473 | 1.3:-25901449 | None:intergenic |
| GGAGCAATTGTTGGTGCATT+TGG | 0.287811 | 1.3:+25902622 | MS.gene65500:CDS |
| GATCCTACCAAGACCGATAA+AGG | 0.287833 | 1.3:+25902670 | MS.gene65500:CDS |
| TGCCTCAATTTGATTATGTT+TGG | 0.291088 | 1.3:+25901891 | MS.gene65500:CDS |
| CTAGCAGGCCAATTATTCTT+TGG | 0.295996 | 1.3:+25901509 | MS.gene65500:CDS |
| CAAGCCAACCAAAGAATAAT+TGG | 0.297426 | 1.3:-25901517 | None:intergenic |
| AGCAAGGAAGAGAATAGAAT+TGG | 0.305550 | 1.3:+25902460 | MS.gene65500:CDS |
| TCCCTTGTCACAAAGTTGTT+AGG | 0.314005 | 1.3:+25901392 | MS.gene65500:CDS |
| ACAACAAATGTTGTAGCATT+TGG | 0.334728 | 1.3:-25902529 | None:intergenic |
| GTTATGCACTTTGCTTGTTC+CGG | 0.348633 | 1.3:+25902759 | MS.gene65500:CDS |
| GTTCCTGGTCTTGTTGGATT+TGG | 0.357998 | 1.3:-25901434 | None:intergenic |
| AAAGGGTATCCAACTGGTAT+TGG | 0.365619 | 1.3:+25902688 | MS.gene65500:CDS |
| GGAAGTGTTCCTGGTCTTGT+TGG | 0.393755 | 1.3:-25901440 | None:intergenic |
| GCGCTGTGCAGTACTGTTCC+GGG | 0.395138 | 1.3:+25902322 | MS.gene65500:CDS |
| TGGATACCCTTTATCGGTCT+TGG | 0.398885 | 1.3:-25902677 | None:intergenic |
| CCCTTGTCACAAAGTTGTTA+GGG | 0.410280 | 1.3:+25901393 | MS.gene65500:CDS |
| TCCTTGCTCCAATGATCATA+TGG | 0.411149 | 1.3:-25902445 | None:intergenic |
| TGGAGACTTATTCTTATGTT+CGG | 0.411605 | 1.3:+25901911 | MS.gene65500:CDS |
| AGTGCTCAATCAGCTGTAAC+TGG | 0.412121 | 1.3:+25901467 | MS.gene65500:CDS |
| ACCAGTTGGATACCCTTTAT+CGG | 0.412868 | 1.3:-25902683 | None:intergenic |
| TTCACTACAATTGTGATAGC+TGG | 0.416291 | 1.3:+25901329 | MS.gene65500:CDS |
| CTCGGTGTGATCAACTTTGT+TGG | 0.421696 | 1.3:+25902733 | MS.gene65500:CDS |
| TCAGCTGCCGCTGGAAAGGC+AGG | 0.422195 | 1.3:+25902601 | MS.gene65500:CDS |
| AGCTGCCGCGGATATGTCTA+AGG | 0.424705 | 1.3:+25902024 | MS.gene65500:CDS |
| AAGGGTATCCAACTGGTATT+GGG | 0.427208 | 1.3:+25902689 | MS.gene65500:CDS |
| GTAACTGGTGTTGCACTTGT+TGG | 0.429691 | 1.3:+25901482 | MS.gene65500:CDS |
| AGAGTTAAGTGGAGAGAATG+AGG | 0.433879 | 1.3:+25902804 | MS.gene65500:CDS |
| TCGTTTCGCAATTCAAATGA+TGG | 0.438129 | 1.3:+25902381 | MS.gene65500:CDS |
| TTGCCATACCATATGATCAT+TGG | 0.440480 | 1.3:+25902437 | MS.gene65500:CDS |
| CAATTATTCTTTGGTTGGCT+TGG | 0.441751 | 1.3:+25901518 | MS.gene65500:CDS |
| CAGGCCAATTATTCTTTGGT+TGG | 0.445254 | 1.3:+25901513 | MS.gene65500:CDS |
| ATTCGCGAAACGACATGGTT+GGG | 0.456811 | 1.3:+25902135 | MS.gene65500:CDS |
| CTATCACAATTGTAGTGAAA+TGG | 0.457116 | 1.3:-25901325 | None:intergenic |
| GGCAACAAGAGCTGTGTAAC+GGG | 0.457457 | 1.3:-25901987 | None:intergenic |
| CACGGAATCTCAGCTGCCGC+TGG | 0.459217 | 1.3:+25902592 | MS.gene65500:CDS |
| TGTTTGGAACATGTAGTACT+TGG | 0.462947 | 1.3:+25902161 | MS.gene65500:CDS |
| GGCAGCTGAGATTCCGTGAC+AGG | 0.468128 | 1.3:-25902587 | None:intergenic |
| GGTTGGCTTGGAGACAAACT+TGG | 0.473479 | 1.3:+25901530 | MS.gene65500:CDS |
| ACCGATAAAGGGTATCCAAC+TGG | 0.474139 | 1.3:+25902682 | MS.gene65500:CDS |
| TACAATTGTGATAGCTGGAA+TGG | 0.475457 | 1.3:+25901334 | MS.gene65500:CDS |
| AGTTGCGTTTATCGATTACA+TGG | 0.480935 | 1.3:+25902357 | MS.gene65500:CDS |
| GTCACAAATTCAGCCATGTC+AGG | 0.484411 | 1.3:+25901254 | None:intergenic |
| TTCTTAATCCCAATACCAGT+TGG | 0.488319 | 1.3:-25902697 | None:intergenic |
| TCGGTGTGATCAACTTTGTT+GGG | 0.490978 | 1.3:+25902734 | MS.gene65500:CDS |
| CGTTTCGCAATTCAAATGAT+GGG | 0.491188 | 1.3:+25902382 | MS.gene65500:CDS |
| GGCACTAACAATGATGCTGC+TGG | 0.492284 | 1.3:-25901872 | None:intergenic |
| GCAAGGAAGAGAATAGAATT+GGG | 0.494872 | 1.3:+25902461 | MS.gene65500:CDS |
| CACTCCTAGTTCTCCTGACA+TGG | 0.495328 | 1.3:-25901267 | None:intergenic |
| TTTGCTTGTTCCGGAATCAA+AGG | 0.495899 | 1.3:+25902768 | MS.gene65500:CDS |
| AATCTCAGCTGCCGCTGGAA+AGG | 0.496144 | 1.3:+25902597 | MS.gene65500:CDS |
| GCACTTGTTGGAACACTAGC+AGG | 0.499060 | 1.3:+25901494 | MS.gene65500:CDS |
| ATGTCGTTTCGCGAATTGCT+TGG | 0.500287 | 1.3:-25902128 | None:intergenic |
| GTTACAGCTGATTGAGCACT+TGG | 0.502566 | 1.3:-25901464 | None:intergenic |
| CAATAATAAGTTAATGCAGC+TGG | 0.504368 | 1.3:-25901941 | None:intergenic |
| ATCCTACCAAGACCGATAAA+GGG | 0.505979 | 1.3:+25902671 | MS.gene65500:CDS |
| TTGCTTGTTCCGGAATCAAA+GGG | 0.506174 | 1.3:+25902769 | MS.gene65500:CDS |
| CCACTGAGCAAGAAGGATCA+AGG | 0.506925 | 1.3:+25902842 | MS.gene65500:CDS |
| TCAGCCATGTCAGGAGAACT+AGG | 0.513123 | 1.3:+25901263 | None:intergenic |
| TGGAATTGTTGCTTTGATTG+TGG | 0.522228 | 1.3:+25901802 | MS.gene65500:CDS |
| ACAATTGTGATAGCTGGAAT+GGG | 0.523177 | 1.3:+25901335 | MS.gene65500:CDS |
| GGAAAGGCAGGAGCAATTGT+TGG | 0.523447 | 1.3:+25902613 | MS.gene65500:CDS |
| AGTGATAAAAGGAATAGTTA+TGG | 0.524232 | 1.3:+25902097 | MS.gene65500:CDS |
| AATTCGCGAAACGACATGGT+TGG | 0.538980 | 1.3:+25902134 | MS.gene65500:CDS |
| AGTGGAGAGAATGAGGGAGA+AGG | 0.543109 | 1.3:+25902811 | MS.gene65500:CDS |
| CTCCAAACATAATCAAATTG+AGG | 0.545090 | 1.3:-25901893 | None:intergenic |
| AGTTGAACTTGAAGTTGAAG+AGG | 0.547307 | 1.3:+25902054 | MS.gene65500:CDS |
| CCCTAACAACTTTGTGACAA+GGG | 0.549878 | 1.3:-25901393 | None:intergenic |
| ACTTGAAGTTGAAGAGGAGA+AGG | 0.556695 | 1.3:+25902060 | MS.gene65500:CDS |
| AAGCAATTCGCGAAACGACA+TGG | 0.558734 | 1.3:+25902130 | MS.gene65500:CDS |
| CCTTGATCCTTCTTGCTCAG+TGG | 0.558886 | 1.3:-25902842 | None:intergenic |
| GGAATCAAAGGGAAAATCGT+TGG | 0.559818 | 1.3:+25902780 | MS.gene65500:CDS |
| TGGCAACAAGAGCTGTGTAA+CGG | 0.571302 | 1.3:-25901988 | None:intergenic |
| GAGTTAAGTGGAGAGAATGA+GGG | 0.575057 | 1.3:+25902805 | MS.gene65500:CDS |
| ACAGCTGATTGAGCACTTGG+TGG | 0.575728 | 1.3:-25901461 | None:intergenic |
| AAGAACTCGCTTATCATGCT+CGG | 0.577140 | 1.3:+25902715 | MS.gene65500:CDS |
| AGGTTAAGGTCAACCTGTCA+CGG | 0.579119 | 1.3:+25902574 | MS.gene65500:CDS |
| GAACCAAATCCAACAAGACC+AGG | 0.579480 | 1.3:+25901431 | MS.gene65500:CDS |
| GCTCCAATGATCATATGGTA+TGG | 0.582429 | 1.3:-25902440 | None:intergenic |
| CAGGTTGACCTTAACCTAGC+CGG | 0.591908 | 1.3:-25902568 | None:intergenic |
| TGCAATCGGATGGATCCCTC+CGG | 0.592267 | 1.3:+25902240 | MS.gene65500:CDS |
| AGAAATGAATGCAATTCATG+AGG | 0.592937 | 1.3:+25902267 | MS.gene65500:CDS |
| AAATCGTTGGAAGAGTTAAG+TGG | 0.593957 | 1.3:+25902793 | MS.gene65500:CDS |
| TCCCTAACAACTTTGTGACA+AGG | 0.594495 | 1.3:-25901394 | None:intergenic |
| CACTGAGCAAGAAGGATCAA+GGG | 0.602834 | 1.3:+25902843 | MS.gene65500:CDS |
| TACCCTTTATCGGTCTTGGT+AGG | 0.605944 | 1.3:-25902673 | None:intergenic |
| GAATGAGGGAGAAGGTGTCG+AGG | 0.608121 | 1.3:+25902819 | MS.gene65500:CDS |
| ACCATATGATCATTGGAGCA+AGG | 0.612455 | 1.3:+25902444 | MS.gene65500:CDS |
| GCAACTGTGAACCAGTAACC+CGG | 0.616763 | 1.3:-25902340 | None:intergenic |
| GTCGAGGCCACTGAGCAAGA+AGG | 0.621352 | 1.3:+25902835 | MS.gene65500:CDS |
| TACAACATTTGTTGTACCTG+CGG | 0.625308 | 1.3:+25902537 | MS.gene65500:CDS |
| GAAATGGTACAATTGTGTCT+TGG | 0.627963 | 1.3:-25901309 | None:intergenic |
| GAACGCGAAACAAGCTGCCG+CGG | 0.638322 | 1.3:+25902012 | MS.gene65500:CDS |
| GTTGCGTTTATCGATTACAT+GGG | 0.662830 | 1.3:+25902358 | MS.gene65500:CDS |
| AATTGCTCCTGCCTTTCCAG+CGG | 0.674047 | 1.3:-25902608 | None:intergenic |
| AGTGCTAAATGCACTTGATG+TGG | 0.688145 | 1.3:+25901286 | MS.gene65500:CDS |
| CAATACCTTAGACATATCCG+CGG | 0.722449 | 1.3:-25902029 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGATCACAAATATA+AGG | + | chr1.3:25901829-25901848 | MS.gene65500:CDS | 15.0% |
| !! | AAAAAATGACTAGTGATAAA+AGG | + | chr1.3:25902086-25902105 | MS.gene65500:CDS | 20.0% |
| ! | AGTGATAAAAGGAATAGTTA+TGG | + | chr1.3:25902097-25902116 | MS.gene65500:CDS | 25.0% |
| ! | TATGCTAACAAAAAAACTAG+AGG | + | chr1.3:25901728-25901747 | MS.gene65500:CDS | 25.0% |
| !! | ACATTCTTCTTTGCTAATTT+TGG | + | chr1.3:25902505-25902524 | MS.gene65500:CDS | 25.0% |
| !! | TAGTCAAAATCTTTTCCAAA+AGG | + | chr1.3:25902207-25902226 | MS.gene65500:CDS | 25.0% |
| ACAACAAATGTTGTAGCATT+TGG | - | chr1.3:25902532-25902551 | None:intergenic | 30.0% | |
| AGAAATGAATGCAATTCATG+AGG | + | chr1.3:25902267-25902286 | MS.gene65500:CDS | 30.0% | |
| CAATAATAAGTTAATGCAGC+TGG | - | chr1.3:25901944-25901963 | None:intergenic | 30.0% | |
| CAGCTGCATTAACTTATTAT+TGG | + | chr1.3:25901942-25901961 | MS.gene65500:CDS | 30.0% | |
| CTATCACAATTGTAGTGAAA+TGG | - | chr1.3:25901328-25901347 | None:intergenic | 30.0% | |
| CTCCAAACATAATCAAATTG+AGG | - | chr1.3:25901896-25901915 | None:intergenic | 30.0% | |
| TGCCTCAATTTGATTATGTT+TGG | + | chr1.3:25901891-25901910 | MS.gene65500:CDS | 30.0% | |
| TGGAGACTTATTCTTATGTT+CGG | + | chr1.3:25901911-25901930 | MS.gene65500:CDS | 30.0% | |
| TGGTTTAACTCTAATTCTCA+TGG | + | chr1.3:25901568-25901587 | MS.gene65500:intron | 30.0% | |
| TTAACTCTAATTCTCATGGT+GGG | + | chr1.3:25901572-25901591 | MS.gene65500:intron | 30.0% | |
| TTTAACTCTAATTCTCATGG+TGG | + | chr1.3:25901571-25901590 | MS.gene65500:intron | 30.0% | |
| ! | ATTGCATTCATTTCTTTTGC+CGG | - | chr1.3:25902262-25902281 | None:intergenic | 30.0% |
| ! | TTGCACTAAAAATGTCCTTT+TGG | - | chr1.3:25902225-25902244 | None:intergenic | 30.0% |
| !! | ATGTAGTACTTGGTTTTTGT+TGG | + | chr1.3:25902171-25902190 | MS.gene65500:CDS | 30.0% |
| !! | CACTTTGTTTCTTTAGGTTT+TGG | + | chr1.3:25901651-25901670 | MS.gene65500:intron | 30.0% |
| !!! | AAGGACATTTTTAGTGCAAT+CGG | + | chr1.3:25902226-25902245 | MS.gene65500:CDS | 30.0% |
| AAATCGTTGGAAGAGTTAAG+TGG | + | chr1.3:25902793-25902812 | MS.gene65500:CDS | 35.0% | |
| ACAATTGTGATAGCTGGAAT+GGG | + | chr1.3:25901335-25901354 | MS.gene65500:CDS | 35.0% | |
| ACATGATTGTAGCTGAAAGA+GGG | - | chr1.3:25901703-25901722 | None:intergenic | 35.0% | |
| AGCAAGGAAGAGAATAGAAT+TGG | + | chr1.3:25902460-25902479 | MS.gene65500:CDS | 35.0% | |
| AGTTGAACTTGAAGTTGAAG+AGG | + | chr1.3:25902054-25902073 | MS.gene65500:CDS | 35.0% | |
| CAAGCCAACCAAAGAATAAT+TGG | - | chr1.3:25901520-25901539 | None:intergenic | 35.0% | |
| CGTTTCGCAATTCAAATGAT+GGG | + | chr1.3:25902382-25902401 | MS.gene65500:CDS | 35.0% | |
| CTTGGTAGGAAAAAAGTCTA+TGG | + | chr1.3:25901548-25901567 | MS.gene65500:intron | 35.0% | |
| GAAATGGTACAATTGTGTCT+TGG | - | chr1.3:25901312-25901331 | None:intergenic | 35.0% | |
| GCAAGGAAGAGAATAGAATT+GGG | + | chr1.3:25902461-25902480 | MS.gene65500:CDS | 35.0% | |
| TACAATTGTGATAGCTGGAA+TGG | + | chr1.3:25901334-25901353 | MS.gene65500:CDS | 35.0% | |
| TCGTTTCGCAATTCAAATGA+TGG | + | chr1.3:25902381-25902400 | MS.gene65500:CDS | 35.0% | |
| TTCACTACAATTGTGATAGC+TGG | + | chr1.3:25901329-25901348 | MS.gene65500:CDS | 35.0% | |
| TTCTTAATCCCAATACCAGT+TGG | - | chr1.3:25902700-25902719 | None:intergenic | 35.0% | |
| TTGCCATACCATATGATCAT+TGG | + | chr1.3:25902437-25902456 | MS.gene65500:CDS | 35.0% | |
| ! | AACGATTTTCCCTTTGATTC+CGG | - | chr1.3:25902781-25902800 | None:intergenic | 35.0% |
| ! | AGTTGCGTTTATCGATTACA+TGG | + | chr1.3:25902357-25902376 | MS.gene65500:CDS | 35.0% |
| ! | CAATTATTCTTTGGTTGGCT+TGG | + | chr1.3:25901518-25901537 | MS.gene65500:CDS | 35.0% |
| ! | GCTGGATTTTCTTCAAATGT+GGG | - | chr1.3:25901857-25901876 | None:intergenic | 35.0% |
| ! | GTTGCGTTTATCGATTACAT+GGG | + | chr1.3:25902358-25902377 | MS.gene65500:CDS | 35.0% |
| ! | TGCTGGATTTTCTTCAAATG+TGG | - | chr1.3:25901858-25901877 | None:intergenic | 35.0% |
| ! | TGGCAACACTTTGTTTCTTT+AGG | + | chr1.3:25901645-25901664 | MS.gene65500:intron | 35.0% |
| ! | TGTTTGGAACATGTAGTACT+TGG | + | chr1.3:25902161-25902180 | MS.gene65500:CDS | 35.0% |
| !! | ATCAAGTCCAAAGAGTGTTA+TGG | + | chr1.3:25901625-25901644 | MS.gene65500:intron | 35.0% |
| !! | ATGCAAGGTTTTGGTATCTT+AGG | + | chr1.3:25901776-25901795 | MS.gene65500:CDS | 35.0% |
| !! | GTTTTTGCTATGCAAGGTTT+TGG | + | chr1.3:25901767-25901786 | MS.gene65500:CDS | 35.0% |
| !! | TACAACATTTGTTGTACCTG+CGG | + | chr1.3:25902537-25902556 | MS.gene65500:CDS | 35.0% |
| !! | TGGAATTGTTGCTTTGATTG+TGG | + | chr1.3:25901802-25901821 | MS.gene65500:CDS | 35.0% |
| !!! | ACATTTTTAGTGCAATCGGA+TGG | + | chr1.3:25902230-25902249 | MS.gene65500:CDS | 35.0% |
| !!! | TGTTTCTTTAGGTTTTGGCT+TGG | + | chr1.3:25901656-25901675 | MS.gene65500:intron | 35.0% |
| !!! | TTTAGGTTTTGGCTTGGTTT+TGG | + | chr1.3:25901662-25901681 | MS.gene65500:intron | 35.0% |
| !!! | TTTTGGCTTGGTTTTGGAAT+TGG | + | chr1.3:25901668-25901687 | MS.gene65500:intron | 35.0% |
| AAGAACTCGCTTATCATGCT+CGG | + | chr1.3:25902715-25902734 | MS.gene65500:CDS | 40.0% | |
| ACCAGTTGGATACCCTTTAT+CGG | - | chr1.3:25902686-25902705 | None:intergenic | 40.0% | |
| ACCATATGATCATTGGAGCA+AGG | + | chr1.3:25902444-25902463 | MS.gene65500:CDS | 40.0% | |
| ACTTGAAGTTGAAGAGGAGA+AGG | + | chr1.3:25902060-25902079 | MS.gene65500:CDS | 40.0% | |
| AGAGTTAAGTGGAGAGAATG+AGG | + | chr1.3:25902804-25902823 | MS.gene65500:CDS | 40.0% | |
| AGTGCTAAATGCACTTGATG+TGG | + | chr1.3:25901286-25901305 | MS.gene65500:CDS | 40.0% | |
| AGTGTTGCCATAACACTCTT+TGG | - | chr1.3:25901635-25901654 | None:intergenic | 40.0% | |
| ATCCTACCAAGACCGATAAA+GGG | + | chr1.3:25902671-25902690 | MS.gene65500:CDS | 40.0% | |
| CAATACCTTAGACATATCCG+CGG | - | chr1.3:25902032-25902051 | None:intergenic | 40.0% | |
| CAGGCCAATTATTCTTTGGT+TGG | + | chr1.3:25901513-25901532 | MS.gene65500:CDS | 40.0% | |
| CCCTAACAACTTTGTGACAA+GGG | - | chr1.3:25901396-25901415 | None:intergenic | 40.0% | |
| CCCTTGTCACAAAGTTGTTA+GGG | + | chr1.3:25901393-25901412 | MS.gene65500:CDS | 40.0% | |
| CTAGCAGGCCAATTATTCTT+TGG | + | chr1.3:25901509-25901528 | MS.gene65500:CDS | 40.0% | |
| GACATGATTGTAGCTGAAAG+AGG | - | chr1.3:25901704-25901723 | None:intergenic | 40.0% | |
| GAGTTAAGTGGAGAGAATGA+GGG | + | chr1.3:25902805-25902824 | MS.gene65500:CDS | 40.0% | |
| GCTCCAATGATCATATGGTA+TGG | - | chr1.3:25902443-25902462 | None:intergenic | 40.0% | |
| GGAATCAAAGGGAAAATCGT+TGG | + | chr1.3:25902780-25902799 | MS.gene65500:CDS | 40.0% | |
| GTTATGCACTTTGCTTGTTC+CGG | + | chr1.3:25902759-25902778 | MS.gene65500:CDS | 40.0% | |
| TCCCTAACAACTTTGTGACA+AGG | - | chr1.3:25901397-25901416 | None:intergenic | 40.0% | |
| TCCCTTGTCACAAAGTTGTT+AGG | + | chr1.3:25901392-25901411 | MS.gene65500:CDS | 40.0% | |
| TCCTTGCTCCAATGATCATA+TGG | - | chr1.3:25902448-25902467 | None:intergenic | 40.0% | |
| TCGGTGTGATCAACTTTGTT+GGG | + | chr1.3:25902734-25902753 | MS.gene65500:CDS | 40.0% | |
| TTGCTTGTTCCGGAATCAAA+GGG | + | chr1.3:25902769-25902788 | MS.gene65500:CDS | 40.0% | |
| TTTGCTTGTTCCGGAATCAA+AGG | + | chr1.3:25902768-25902787 | MS.gene65500:CDS | 40.0% | |
| ! | AGATTTTTCCGGCTAGGTTA+AGG | + | chr1.3:25902560-25902579 | MS.gene65500:CDS | 40.0% |
| ! | CATTCATTTCTTTTGCCGGA+GGG | - | chr1.3:25902258-25902277 | None:intergenic | 40.0% |
| !! | AAAGGGTATCCAACTGGTAT+TGG | + | chr1.3:25902688-25902707 | MS.gene65500:CDS | 40.0% |
| !! | AAGGGTATCCAACTGGTATT+GGG | + | chr1.3:25902689-25902708 | MS.gene65500:CDS | 40.0% |
| !! | CAAGGTTTTGGTATCTTAGG+TGG | + | chr1.3:25901779-25901798 | MS.gene65500:CDS | 40.0% |
| AAGCAATTCGCGAAACGACA+TGG | + | chr1.3:25902130-25902149 | MS.gene65500:CDS | 45.0% | |
| AATTCGCGAAACGACATGGT+TGG | + | chr1.3:25902134-25902153 | MS.gene65500:CDS | 45.0% | |
| AGGTTAAGGTCAACCTGTCA+CGG | + | chr1.3:25902574-25902593 | MS.gene65500:CDS | 45.0% | |
| AGTGCTCAATCAGCTGTAAC+TGG | + | chr1.3:25901467-25901486 | MS.gene65500:CDS | 45.0% | |
| ATTCGCGAAACGACATGGTT+GGG | + | chr1.3:25902135-25902154 | MS.gene65500:CDS | 45.0% | |
| CACTGAGCAAGAAGGATCAA+GGG | + | chr1.3:25902843-25902862 | MS.gene65500:CDS | 45.0% | |
| GAACCAAATCCAACAAGACC+AGG | + | chr1.3:25901431-25901450 | MS.gene65500:CDS | 45.0% | |
| GATCCTACCAAGACCGATAA+AGG | + | chr1.3:25902670-25902689 | MS.gene65500:CDS | 45.0% | |
| GGAGCAATTGTTGGTGCATT+TGG | + | chr1.3:25902622-25902641 | MS.gene65500:CDS | 45.0% | |
| GTTACAGCTGATTGAGCACT+TGG | - | chr1.3:25901467-25901486 | None:intergenic | 45.0% | |
| TACCCTTTATCGGTCTTGGT+AGG | - | chr1.3:25902676-25902695 | None:intergenic | 45.0% | |
| TGATCCAAAAGAGAGTCCTG+AGG | - | chr1.3:25901609-25901628 | None:intergenic | 45.0% | |
| TGGATACCCTTTATCGGTCT+TGG | - | chr1.3:25902680-25902699 | None:intergenic | 45.0% | |
| TGGCAACAAGAGCTGTGTAA+CGG | - | chr1.3:25901991-25902010 | None:intergenic | 45.0% | |
| ! | ATGTCGTTTCGCGAATTGCT+TGG | - | chr1.3:25902131-25902150 | None:intergenic | 45.0% |
| ! | CTCGGTGTGATCAACTTTGT+TGG | + | chr1.3:25902733-25902752 | MS.gene65500:CDS | 45.0% |
| ! | GCATTCATTTCTTTTGCCGG+AGG | - | chr1.3:25902259-25902278 | None:intergenic | 45.0% |
| ! | TGTACCTGCGGAGATTTTTC+CGG | + | chr1.3:25902549-25902568 | MS.gene65500:CDS | 45.0% |
| !! | ACCGATAAAGGGTATCCAAC+TGG | + | chr1.3:25902682-25902701 | MS.gene65500:CDS | 45.0% |
| !! | GGTTTTGGTATCTTAGGTGG+TGG | + | chr1.3:25901782-25901801 | MS.gene65500:CDS | 45.0% |
| !! | GTAACTGGTGTTGCACTTGT+TGG | + | chr1.3:25901482-25901501 | MS.gene65500:CDS | 45.0% |
| !! | GTTCCTGGTCTTGTTGGATT+TGG | - | chr1.3:25901437-25901456 | None:intergenic | 45.0% |
| !!! | GCTGCTGTTTTTGCTATGCA+AGG | + | chr1.3:25901761-25901780 | MS.gene65500:CDS | 45.0% |
| !!! | TGGCTTGGTTTTGGAATTGG+TGG | + | chr1.3:25901671-25901690 | MS.gene65500:intron | 45.0% |
| AATTGCTCCTGCCTTTCCAG+CGG | - | chr1.3:25902611-25902630 | None:intergenic | 50.0% | |
| ACAGCTGATTGAGCACTTGG+TGG | - | chr1.3:25901464-25901483 | None:intergenic | 50.0% | |
| AGTGGAGAGAATGAGGGAGA+AGG | + | chr1.3:25902811-25902830 | MS.gene65500:CDS | 50.0% | |
| CCACTGAGCAAGAAGGATCA+AGG | + | chr1.3:25902842-25902861 | MS.gene65500:CDS | 50.0% | |
| CCTTGATCCTTCTTGCTCAG+TGG | - | chr1.3:25902845-25902864 | None:intergenic | 50.0% | |
| GCAACTGTGAACCAGTAACC+CGG | - | chr1.3:25902343-25902362 | None:intergenic | 50.0% | |
| GGAAAGGCAGGAGCAATTGT+TGG | + | chr1.3:25902613-25902632 | MS.gene65500:CDS | 50.0% | |
| GGCAACAAGAGCTGTGTAAC+GGG | - | chr1.3:25901990-25902009 | None:intergenic | 50.0% | |
| GGCACTAACAATGATGCTGC+TGG | - | chr1.3:25901875-25901894 | None:intergenic | 50.0% | |
| GGCTTGGAGACAAACTTGGT+AGG | + | chr1.3:25901534-25901553 | MS.gene65500:intron | 50.0% | |
| ! | CAGGTTGACCTTAACCTAGC+CGG | - | chr1.3:25902571-25902590 | None:intergenic | 50.0% |
| ! | GCACTTGTTGGAACACTAGC+AGG | + | chr1.3:25901494-25901513 | MS.gene65500:CDS | 50.0% |
| ! | GTTGCCTCAGGACTCTCTTT+TGG | + | chr1.3:25901602-25901621 | MS.gene65500:intron | 50.0% |
| !! | CGACATGGTTGGGCTTTGTT+TGG | + | chr1.3:25902145-25902164 | MS.gene65500:CDS | 50.0% |
| !! | GGAAGTGTTCCTGGTCTTGT+TGG | - | chr1.3:25901443-25901462 | None:intergenic | 50.0% |
| !! | GGTTGGCTTGGAGACAAACT+TGG | + | chr1.3:25901530-25901549 | MS.gene65500:CDS | 50.0% |
| AATCTCAGCTGCCGCTGGAA+AGG | + | chr1.3:25902597-25902616 | MS.gene65500:CDS | 55.0% | |
| AGCTGCCGCGGATATGTCTA+AGG | + | chr1.3:25902024-25902043 | MS.gene65500:CDS | 55.0% | |
| CTAGCCGGAAAAATCTCCGC+AGG | - | chr1.3:25902556-25902575 | None:intergenic | 55.0% | |
| GCAGTACTGTTCCGGGTTAC+TGG | + | chr1.3:25902329-25902348 | MS.gene65500:CDS | 55.0% | |
| TGCAATCGGATGGATCCCTC+CGG | + | chr1.3:25902240-25902259 | MS.gene65500:CDS | 55.0% | |
| TGCGCTGTGCAGTACTGTTC+CGG | + | chr1.3:25902321-25902340 | MS.gene65500:CDS | 55.0% | |
| ! | CTGCGGAGATTTTTCCGGCT+AGG | + | chr1.3:25902554-25902573 | MS.gene65500:CDS | 55.0% |
| ! | GGCAGCTTGTTTCGCGTTCT+TGG | - | chr1.3:25902011-25902030 | None:intergenic | 55.0% |
| ! | GTGGGTTGTTCTGTTGCCTC+AGG | + | chr1.3:25901590-25901609 | MS.gene65500:intron | 55.0% |
| !! | GAATGAGGGAGAAGGTGTCG+AGG | + | chr1.3:25902819-25902838 | MS.gene65500:CDS | 55.0% |
| !! | GCACTTGGTGGAAGTGTTCC+TGG | - | chr1.3:25901452-25901471 | None:intergenic | 55.0% |
| !! | GCTGTGTAACGGGCTGTTTC+TGG | - | chr1.3:25901980-25901999 | None:intergenic | 55.0% |
| GAACGCGAAACAAGCTGCCG+CGG | + | chr1.3:25902012-25902031 | MS.gene65500:CDS | 60.0% | |
| GCGCTGTGCAGTACTGTTCC+GGG | + | chr1.3:25902322-25902341 | MS.gene65500:CDS | 60.0% | |
| GGCAGCTGAGATTCCGTGAC+AGG | - | chr1.3:25902590-25902609 | None:intergenic | 60.0% | |
| GTCGAGGCCACTGAGCAAGA+AGG | + | chr1.3:25902835-25902854 | MS.gene65500:CDS | 60.0% | |
| CACGGAATCTCAGCTGCCGC+TGG | + | chr1.3:25902592-25902611 | MS.gene65500:CDS | 65.0% | |
| TCAGCTGCCGCTGGAAAGGC+AGG | + | chr1.3:25902601-25902620 | MS.gene65500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 25901269 | 25902870 | 25901269 | ID=MS.gene65500 |
| chr1.3 | mRNA | 25901269 | 25902870 | 25901269 | ID=MS.gene65500.t1;Parent=MS.gene65500 |
| chr1.3 | exon | 25901269 | 25901551 | 25901269 | ID=MS.gene65500.t1.exon1;Parent=MS.gene65500.t1 |
| chr1.3 | CDS | 25901269 | 25901551 | 25901269 | ID=cds.MS.gene65500.t1;Parent=MS.gene65500.t1 |
| chr1.3 | exon | 25901711 | 25902870 | 25901711 | ID=MS.gene65500.t1.exon2;Parent=MS.gene65500.t1 |
| chr1.3 | CDS | 25901711 | 25902870 | 25901711 | ID=cds.MS.gene65500.t1;Parent=MS.gene65500.t1 |
| Gene Sequence |
| Protein sequence |
