AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67387


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67387.t1 MTR_4g062100 97.192 463 7 1 1 463 1 457 0.0 910
MS.gene67387.t1 MTR_2g096190 78.781 443 93 1 12 453 7 449 0.0 697
MS.gene67387.t1 MTR_7g100390 61.086 442 165 2 22 463 1 435 0.0 522
MS.gene67387.t1 MTR_7g117620 57.848 446 181 6 8 453 21 459 2.13e-160 466
MS.gene67387.t1 MTR_1g115575 46.983 464 208 7 16 456 58 506 2.89e-126 380
MS.gene67387.t1 MTR_1g032100 43.820 445 226 7 35 468 14 445 1.59e-118 358
MS.gene67387.t1 MTR_8g105260 45.700 407 204 5 66 468 59 452 2.72e-114 347
MS.gene67387.t1 MTR_7g100430 43.312 471 228 8 19 465 56 511 2.66e-103 320
MS.gene67387.t1 MTR_2g101310 26.908 498 269 13 29 453 68 543 1.18e-33 134
MS.gene67387.t1 MTR_2g101310 25.781 256 183 4 32 286 2 251 2.02e-17 85.5
MS.gene67387.t1 MTR_2g101320 26.518 494 271 12 32 453 71 544 2.81e-32 130
MS.gene67387.t1 MTR_2g101320 23.016 252 148 4 72 288 38 278 3.47e-18 88.2
MS.gene67387.t1 MTR_2g101310 26.316 437 234 12 29 392 68 489 2.69e-25 108
MS.gene67387.t1 MTR_2g101310 25.781 256 183 4 32 286 2 251 4.51e-17 84.0
MS.gene67387.t1 MTR_1g069110 26.176 340 226 9 133 453 44 377 9.47e-23 101
MS.gene67387.t1 MTR_8g066670 23.990 396 251 8 60 430 1061 1431 8.28e-21 96.7
MS.gene67387.t1 MTR_7g451420 25.538 325 203 7 74 384 9 308 4.67e-17 82.4
MS.gene67387.t1 MTR_3g085830 26.761 284 177 10 35 294 109 385 9.63e-17 83.6
MS.gene67387.t1 MTR_3g085830 33.500 200 121 5 58 248 94 290 1.03e-15 80.5
MS.gene67387.t1 MTR_3g085830 29.167 192 126 4 100 282 100 290 4.13e-13 72.0
MS.gene67387.t1 MTR_6g022830 33.171 205 116 6 108 294 192 393 2.52e-16 82.4
MS.gene67387.t1 MTR_6g023070 33.171 205 116 6 108 294 129 330 3.76e-16 81.6
MS.gene67387.t1 MTR_2g438760 22.574 505 316 11 4 454 16 499 4.13e-16 81.3
MS.gene67387.t1 MTR_8g073260 24.332 337 208 9 109 423 47 358 6.61e-16 80.1
MS.gene67387.t1 MTR_8g072510 23.148 324 212 6 74 384 10 309 1.42e-15 79.3
MS.gene67387.t1 MTR_8g080080 27.315 216 139 3 108 305 188 403 1.63e-15 79.7
MS.gene67387.t1 MTR_8g080080 30.769 195 119 3 70 248 102 296 5.57e-15 78.2
MS.gene67387.t1 MTR_1g112830 30.000 190 130 3 109 298 139 325 5.02e-15 78.2
MS.gene67387.t1 MTR_5g085830 21.818 385 264 7 67 430 240 608 7.91e-15 77.8
MS.gene67387.t1 MTR_5g085480 25.634 355 179 13 100 416 111 418 8.53e-15 77.0
MS.gene67387.t1 MTR_5g085480 25.352 355 180 12 100 416 271 578 1.41e-14 76.6
MS.gene67387.t1 MTR_5g043640 32.727 165 106 4 136 298 51 212 2.03e-14 73.6
MS.gene67387.t1 MTR_8g062410 25.490 255 174 3 74 315 10 261 6.18e-14 74.3
MS.gene67387.t1 MTR_3g105650 25.152 330 173 9 107 384 3 310 9.39e-14 73.6
MS.gene67387.t1 MTR_7g099570 27.200 250 164 8 103 341 7 249 1.84e-13 73.2
MS.gene67387.t1 MTR_8g467780 26.442 208 146 3 109 313 11 214 2.36e-13 72.4
MS.gene67387.t1 MTR_1g059930 25.688 327 171 9 106 384 9 311 3.51e-13 71.6
MS.gene67387.t1 MTR_5g085810 20.343 408 274 8 52 430 251 636 3.59e-13 72.4
MS.gene67387.t1 MTR_2g096760 28.365 208 124 4 73 261 14 215 4.12e-13 71.6
MS.gene67387.t1 MTR_8g068990 22.989 348 204 9 109 430 48 357 5.94e-13 71.2
MS.gene67387.t1 MTR_3g016210 22.152 316 211 6 104 384 5 320 7.21e-13 70.9
MS.gene67387.t1 MTR_5g026800 31.163 215 122 6 109 322 15 204 1.06e-12 68.6
MS.gene67387.t1 MTR_8g039620 23.939 330 174 8 107 384 12 316 1.54e-12 69.7
MS.gene67387.t1 MTR_4g116160 28.261 276 182 9 109 380 40 303 4.83e-12 68.6
MS.gene67387.t1 MTR_5g085500 33.766 154 93 5 135 280 1 153 7.71e-12 67.8
MS.gene67387.t1 MTR_8g040930 21.866 343 218 7 116 432 2 320 7.79e-12 67.4
MS.gene67387.t1 MTR_8g041240 21.866 343 218 7 116 432 2 320 7.79e-12 67.4
MS.gene67387.t1 MTR_8g069880 23.171 410 252 14 35 432 7 365 8.76e-12 67.4
MS.gene67387.t1 MTR_1g089180 29.018 224 131 10 99 298 210 429 1.02e-11 67.4
MS.gene67387.t1 MTR_4g063830 22.961 331 223 8 71 382 13 330 1.20e-11 67.0
MS.gene67387.t1 MTR_6g027840 27.113 284 178 11 34 315 246 502 1.23e-11 67.4
MS.gene67387.t1 MTR_4g116160 28.261 276 182 9 109 380 40 303 2.06e-11 66.6
MS.gene67387.t1 MTR_4g113530 30.357 168 112 4 136 303 548 710 7.56e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67387.t1 AT1G07710 70.264 454 128 3 1 453 1 448 0.0 597
MS.gene67387.t1 AT1G07710 70.264 454 128 3 1 453 1 448 0.0 597
MS.gene67387.t1 AT5G60070 65.487 452 151 3 7 453 8 459 0.0 575
MS.gene67387.t1 AT5G02620 63.492 441 152 3 19 453 5 442 0.0 537
MS.gene67387.t1 AT5G02620 63.492 441 152 3 19 453 5 442 0.0 537
MS.gene67387.t1 AT5G02620 63.492 441 152 3 19 453 5 442 0.0 537
MS.gene67387.t1 AT5G02620 60.560 464 151 4 19 453 5 465 0.0 526
MS.gene67387.t1 AT5G02620 60.560 464 151 4 19 453 5 465 0.0 526
MS.gene67387.t1 AT2G31820 56.250 448 188 5 8 455 130 569 2.07e-158 465
MS.gene67387.t1 AT1G05640 56.109 442 184 6 15 453 98 532 3.85e-149 440
MS.gene67387.t1 AT3G12360 46.476 454 216 7 16 453 47 489 6.24e-121 366
MS.gene67387.t1 AT3G12360 46.476 454 216 7 16 453 59 501 7.86e-121 366
MS.gene67387.t1 AT3G09550 45.934 455 211 6 19 453 76 515 3.65e-120 365
MS.gene67387.t1 AT3G09550 45.934 455 211 6 19 453 76 515 3.65e-120 365
MS.gene67387.t1 AT3G09550 45.934 455 211 6 19 453 83 522 4.31e-120 365
MS.gene67387.t1 AT2G01680 43.527 448 226 5 35 468 14 448 4.63e-115 349
MS.gene67387.t1 AT2G24600 26.398 447 277 15 32 453 72 491 2.29e-32 130
MS.gene67387.t1 AT2G24600 26.398 447 277 15 32 453 72 491 2.29e-32 130
MS.gene67387.t1 AT1G34050 27.252 444 276 12 21 453 75 482 1.80e-29 122
MS.gene67387.t1 AT5G54710 27.477 444 264 13 32 453 103 510 8.08e-28 117
MS.gene67387.t1 AT5G54710 27.477 444 264 13 32 453 148 555 8.52e-28 117
MS.gene67387.t1 AT5G54710 26.695 236 160 3 90 323 1 225 1.04e-12 70.9
MS.gene67387.t1 AT5G54710 23.958 288 177 5 32 290 19 293 1.47e-12 70.5
MS.gene67387.t1 AT4G03500 25.352 497 288 17 1 429 59 540 9.86e-28 117
MS.gene67387.t1 AT4G03500 25.203 492 287 16 4 429 41 517 1.09e-27 117
MS.gene67387.t1 AT4G03500 25.203 492 287 16 4 429 41 517 1.09e-27 117
MS.gene67387.t1 AT1G10340 25.164 457 298 13 32 465 72 507 1.55e-26 113
MS.gene67387.t1 AT1G10340 24.324 481 304 13 31 465 37 503 2.31e-26 112
MS.gene67387.t1 AT4G14390 25.874 429 268 10 33 428 149 560 1.20e-25 111
MS.gene67387.t1 AT4G14390 26.047 430 267 10 33 428 168 580 1.40e-25 110
MS.gene67387.t1 AT4G14390 25.874 429 268 10 33 428 168 579 1.56e-25 110
MS.gene67387.t1 AT4G03470 25.995 427 276 11 27 429 149 559 1.72e-25 110
MS.gene67387.t1 AT4G03460 24.726 457 272 14 32 429 81 524 5.25e-25 108
MS.gene67387.t1 AT4G03460 33.824 136 79 2 134 258 75 210 7.80e-13 71.2
MS.gene67387.t1 AT4G03460 24.000 425 260 11 62 429 74 492 3.13e-24 106
MS.gene67387.t1 AT4G03480 26.166 386 221 10 67 429 309 653 5.23e-24 105
MS.gene67387.t1 AT4G03480 26.166 386 221 10 67 429 312 656 6.42e-24 105
MS.gene67387.t1 AT2G24600 26.209 393 242 14 32 399 72 441 2.19e-23 103
MS.gene67387.t1 AT2G24600 26.209 393 242 14 32 399 72 441 2.19e-23 103
MS.gene67387.t1 AT1G03670 22.532 466 288 11 21 429 62 511 4.82e-23 102
MS.gene67387.t1 AT4G10720 26.923 338 205 9 109 428 41 354 2.26e-22 99.8
MS.gene67387.t1 AT4G10720 27.986 293 173 7 109 384 41 312 1.10e-21 97.8
MS.gene67387.t1 AT4G05040 25.117 426 283 10 30 429 148 563 1.19e-21 98.6
MS.gene67387.t1 AT4G05040 28.324 173 109 3 141 298 83 255 5.78e-11 65.1
MS.gene67387.t1 AT4G05040 25.117 426 283 10 30 429 148 563 1.19e-21 98.6
MS.gene67387.t1 AT4G05040 28.324 173 109 3 141 298 83 255 5.78e-11 65.1
MS.gene67387.t1 AT4G05040 25.117 426 283 10 30 429 148 563 1.19e-21 98.6
MS.gene67387.t1 AT4G05040 28.324 173 109 3 141 298 83 255 5.78e-11 65.1
MS.gene67387.t1 AT4G05040 25.117 426 283 10 30 429 148 563 1.19e-21 98.6
MS.gene67387.t1 AT4G05040 28.324 173 109 3 141 298 83 255 5.78e-11 65.1
MS.gene67387.t1 AT4G05040 25.117 426 283 10 30 429 148 563 1.19e-21 98.6
MS.gene67387.t1 AT4G05040 28.324 173 109 3 141 298 83 255 5.78e-11 65.1
MS.gene67387.t1 AT4G05040 25.117 426 283 10 30 429 148 563 1.19e-21 98.6
MS.gene67387.t1 AT4G05040 28.324 173 109 3 141 298 83 255 5.78e-11 65.1
MS.gene67387.t1 AT4G05040 25.117 426 283 10 30 429 148 563 1.19e-21 98.6
MS.gene67387.t1 AT4G05040 28.324 173 109 3 141 298 83 255 5.78e-11 65.1
MS.gene67387.t1 AT5G54700 27.302 315 158 9 165 465 23 280 1.01e-19 90.9
MS.gene67387.t1 AT4G14390 25.521 384 242 9 33 383 149 521 3.75e-19 90.9
MS.gene67387.t1 AT5G51160 26.364 330 196 10 135 432 43 357 1.45e-18 88.6
MS.gene67387.t1 AT4G14400 23.841 453 255 10 33 429 71 489 1.54e-18 89.0
MS.gene67387.t1 AT4G14400 23.841 453 255 10 33 429 71 489 1.54e-18 89.0
MS.gene67387.t1 AT4G14400 23.841 453 255 10 33 429 137 555 2.12e-18 89.0
MS.gene67387.t1 AT4G03440 24.934 377 240 12 67 429 262 609 5.50e-18 87.8
MS.gene67387.t1 AT4G03440 24.934 377 240 12 67 429 262 609 5.50e-18 87.8
MS.gene67387.t1 AT5G50140 25.330 454 252 16 27 453 57 450 6.27e-18 87.0
MS.gene67387.t1 AT5G50140 24.815 270 179 6 80 331 6 269 1.20e-14 76.6
MS.gene67387.t1 AT4G03440 24.934 377 240 12 67 429 269 616 6.86e-18 87.4
MS.gene67387.t1 AT4G03450 25.962 416 243 13 32 429 154 522 4.39e-17 84.7
MS.gene67387.t1 AT4G03450 25.379 264 169 5 27 288 101 338 1.81e-13 73.2
MS.gene67387.t1 AT4G03450 24.176 273 184 6 35 290 40 306 3.65e-11 65.9
MS.gene67387.t1 AT5G15500 24.147 381 214 9 108 434 5 364 4.80e-17 84.0
MS.gene67387.t1 AT4G03450 25.962 416 243 13 32 429 154 522 5.06e-17 84.3
MS.gene67387.t1 AT4G03450 25.379 264 169 5 27 288 101 338 1.57e-13 73.6
MS.gene67387.t1 AT4G03450 24.176 273 184 6 35 290 40 306 2.85e-11 66.2
MS.gene67387.t1 AT5G54700 25.705 319 179 9 170 465 34 317 1.67e-16 82.4
MS.gene67387.t1 AT2G03430 32.353 204 131 6 56 257 33 231 9.07e-16 77.4
MS.gene67387.t1 AT2G03430 34.759 187 109 7 64 245 8 186 2.15e-13 70.5
MS.gene67387.t1 AT2G03430 31.818 198 119 9 109 298 16 205 1.30e-11 65.1
MS.gene67387.t1 AT3G04140 26.168 321 194 11 35 316 106 422 2.62e-15 79.0
MS.gene67387.t1 AT3G04140 30.542 203 120 4 100 281 97 299 1.60e-13 73.6
MS.gene67387.t1 AT3G01750 27.823 248 138 7 35 248 109 349 1.10e-14 77.0
MS.gene67387.t1 AT3G01750 27.823 248 138 7 35 248 109 349 1.10e-14 77.0
MS.gene67387.t1 AT4G03490 20.190 421 232 12 62 422 64 440 2.38e-13 73.2
MS.gene67387.t1 AT4G03490 20.737 434 252 12 62 422 84 498 3.56e-13 72.4
MS.gene67387.t1 AT4G03490 20.190 421 232 12 62 422 74 450 3.65e-13 72.4
MS.gene67387.t1 AT4G03490 20.737 434 252 12 62 422 84 498 4.87e-13 72.0
MS.gene67387.t1 AT4G03490 20.737 434 252 12 62 422 74 488 5.16e-13 71.6
MS.gene67387.t1 AT4G19150 35.833 120 75 2 109 228 20 137 1.38e-12 68.2
MS.gene67387.t1 AT5G57740 28.378 222 120 6 109 294 55 273 1.60e-12 70.1
MS.gene67387.t1 AT5G20350 30.542 203 132 6 99 298 25 221 1.73e-12 70.1
MS.gene67387.t1 AT1G14500 24.255 235 159 4 109 326 41 273 3.07e-12 68.9
MS.gene67387.t1 AT1G14500 27.922 154 107 3 112 262 8 160 2.49e-11 65.9
MS.gene67387.t1 AT5G54620 28.182 220 142 5 109 313 41 259 3.12e-12 68.9
MS.gene67387.t1 AT5G54620 28.188 149 105 1 116 262 12 160 2.29e-11 66.2
MS.gene67387.t1 AT2G28840 29.341 167 103 4 109 261 50 215 4.82e-12 68.2
MS.gene67387.t1 AT3G04710 28.571 287 185 9 10 294 227 495 1.79e-11 67.0
MS.gene67387.t1 AT2G26650 34.395 157 97 5 104 260 445 595 2.40e-11 66.6
MS.gene67387.t1 AT2G26650 34.395 157 97 5 104 260 550 700 2.50e-11 66.6
MS.gene67387.t1 AT2G14255 30.201 149 101 3 109 256 95 241 4.49e-11 65.5

Find 109 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTGGGGTAACTATTAT+TGG 0.156648 4.1:+37687719 MS.gene67387:CDS
AATAAACATGGTTGATAATA+AGG 0.174079 4.1:+37686129 MS.gene67387:CDS
CATTGGGTACTATGAGTTAT+TGG 0.186716 4.1:+37687762 MS.gene67387:CDS
TTCTTCCTTTGAGCCCTTAC+TGG 0.196107 4.1:-37684928 None:intergenic
CTATGAGTTATTGGGTTATT+AGG 0.231803 4.1:+37687771 MS.gene67387:CDS
TCAACCATGTTTATTGTTGA+TGG 0.242519 4.1:-37686121 None:intergenic
TACCTGAGTTCTTCCCTTCC+TGG 0.243726 4.1:-37686176 None:intergenic
GCTGCTAAACAAGGGGATTT+AGG 0.260704 4.1:+37685222 MS.gene67387:CDS
ACCCAATGTTGTAGCCATTA+TGG 0.293380 4.1:-37687747 None:intergenic
CTTTATGTTGCTGCTGAGTA+TGG 0.312082 4.1:+37685108 MS.gene67387:CDS
TGTTACAAGGACTGATAAAA+AGG 0.312944 4.1:+37686027 MS.gene67387:CDS
CAATTGGGGTAACTATTATT+GGG 0.329062 4.1:+37687720 MS.gene67387:CDS
ATGGTTATGTTGATATGGTT+AGG 0.342881 4.1:+37685127 MS.gene67387:CDS
CTGCATTCGGCTGCAAGAAA+TGG 0.353753 4.1:+37685959 MS.gene67387:CDS
AAACAAAGGTGGCTTGCAAT+TGG 0.357257 4.1:+37687704 MS.gene67387:CDS
AACAAAGGTGGCTTGCAATT+GGG 0.360089 4.1:+37687705 MS.gene67387:CDS
ATTGGGTACTATGAGTTATT+GGG 0.363533 4.1:+37687763 MS.gene67387:CDS
CAGATTATCAAGTTGATACT+TGG 0.370218 4.1:+37687044 MS.gene67387:intron
TGAGTATGGTTATGTTGATA+TGG 0.383585 4.1:+37685122 MS.gene67387:CDS
TGGGAACATGGCTTCTTTGA+AGG 0.392889 4.1:+37685011 MS.gene67387:CDS
TATTATTGGGACTACCATAA+TGG 0.409865 4.1:+37687733 MS.gene67387:CDS
ACCATAATGGCTACAACATT+GGG 0.411626 4.1:+37687746 MS.gene67387:CDS
TTTCATCTCCCTCGCGGTTG+TGG 0.414269 4.1:+37687544 MS.gene67387:CDS
TACCATAATGGCTACAACAT+TGG 0.414943 4.1:+37687745 MS.gene67387:CDS
ATTCAGAATGAGCTTCCATT+AGG 0.417012 4.1:-37685799 None:intergenic
AAGCTATGTTTGCTTGGCCA+AGG 0.418188 4.1:-37687475 None:intergenic
CAAACACGGAGAAGCGTTCA+AGG 0.420143 4.1:+37687290 MS.gene67387:CDS
GGCTGCAAGAAATGGACATT+TGG 0.423249 4.1:+37685967 MS.gene67387:CDS
TCTTTGAAGGATACAGTTGA+TGG 0.424259 4.1:+37685024 MS.gene67387:CDS
GGATTGTCCACGAATTGGCC+TGG 0.428954 4.1:-37687428 None:intergenic
GCTGGAATTAAAGCAAGAAA+TGG 0.432637 4.1:+37685180 MS.gene67387:CDS
TTACATTCGGCAGCAAGAGC+TGG 0.434837 4.1:+37684991 MS.gene67387:CDS
AGCCTCAGGCTGCACCAGTA+AGG 0.434924 4.1:+37684914 MS.gene67387:CDS
TATTATGATCTTGCTGATGC+TGG 0.442983 4.1:+37685162 MS.gene67387:CDS
ATAAACATGGTTGATAATAA+GGG 0.448264 4.1:+37686130 MS.gene67387:CDS
GTTCTGAAGCTATGTTTGCT+TGG 0.451582 4.1:-37687481 None:intergenic
TTGTGTTGCAGCTGTGTGTA+AGG 0.457992 4.1:-37685855 None:intergenic
CGATGATACGCCGTTACATT+CGG 0.459070 4.1:+37684978 MS.gene67387:CDS
TGGTTATGTTGATATGGTTA+GGG 0.459988 4.1:+37685128 MS.gene67387:CDS
GGCGCTTCACATGGCTGTGA+AGG 0.462145 4.1:+37686057 MS.gene67387:CDS
AGCTGAAACTGTGCAGCCTC+AGG 0.466637 4.1:+37684900 MS.gene67387:CDS
AGTATTCATCGTGTTTGATT+CGG 0.466809 4.1:+37687514 MS.gene67387:CDS
TTAGACACAGCTGAGAAAAC+AGG 0.479957 4.1:+37687116 MS.gene67387:CDS
TGGTAAAACAGCTCTGCATT+CGG 0.480032 4.1:+37685946 MS.gene67387:CDS
AAAATGACGAAACAATTGAC+AGG 0.480397 4.1:+37684949 MS.gene67387:CDS
ACAAAGGTGGCTTGCAATTG+GGG 0.480789 4.1:+37687706 MS.gene67387:CDS
GCAGCCATCTTCACCGTCCC+AGG 0.481264 4.1:+37687410 MS.gene67387:CDS
GCCTCAGGCTGCACCAGTAA+GGG 0.485466 4.1:+37684915 MS.gene67387:CDS
TAATAGATATTTCACTATCT+CGG 0.487002 4.1:-37685885 None:intergenic
GCAACAATTGCTAGAAGTAA+TGG 0.488412 4.1:+37685926 MS.gene67387:CDS
GATTGTCCACGAATTGGCCT+GGG 0.495849 4.1:-37687427 None:intergenic
AGATATCGTAAAGATCCTAA+TGG 0.499307 4.1:+37685784 MS.gene67387:intron
CTTCATATTGCTGCTAAACA+AGG 0.509684 4.1:+37685213 MS.gene67387:CDS
TACATTCGGCAGCAAGAGCT+GGG 0.514491 4.1:+37684992 MS.gene67387:CDS
GTGAAATATCTATTAGAAGC+AGG 0.514806 4.1:+37685893 MS.gene67387:CDS
TGCAAGAAATGGACATTTGG+AGG 0.518560 4.1:+37685970 MS.gene67387:CDS
CATCTCCCTCGCGGTTGTGG+TGG 0.520207 4.1:+37687547 MS.gene67387:CDS
AGCTATGTTTGCTTGGCCAA+GGG 0.521899 4.1:-37687474 None:intergenic
CGAATGCAACCGTTGCTATG+AGG 0.528608 4.1:-37687388 None:intergenic
TTGGCCTGGGACGGTGAAGA+TGG 0.531539 4.1:-37687414 None:intergenic
GCGATTCTTGAGAAGGAGCC+TGG 0.531890 4.1:+37686001 MS.gene67387:CDS
AGGAGCCTGGTGTTGTTACA+AGG 0.535008 4.1:+37686014 MS.gene67387:CDS
CTTGGACAAAGTGAAACAAA+TGG 0.535956 4.1:+37687062 MS.gene67387:CDS
CACCGTCCCAGGCCAATTCG+TGG 0.536072 4.1:+37687421 MS.gene67387:CDS
GCGCTTCACATGGCTGTGAA+GGG 0.537881 4.1:+37686058 MS.gene67387:CDS
CAAAGCAAAGAAGCAAATGA+TGG 0.544079 4.1:+37687598 MS.gene67387:CDS
TTTGACGAGTGTGTTCTAGT+TGG 0.546084 4.1:-37687271 None:intergenic
TGCAGCTGTGTGTAAGGCAG+TGG 0.547984 4.1:-37685849 None:intergenic
GCCCTTACTGGTGCAGCCTG+AGG 0.548134 4.1:-37684916 None:intergenic
TACAGTTGATGGTGCTGAAG+AGG 0.548363 4.1:+37685035 MS.gene67387:CDS
TGTAAGGCAGTGGTGTTGGA+TGG 0.552288 4.1:-37685839 None:intergenic
GGCAGCAAGAGCTGGGAACA+TGG 0.556799 4.1:+37684999 MS.gene67387:CDS
CGCTTCACATGGCTGTGAAG+GGG 0.560548 4.1:+37686059 MS.gene67387:CDS
TGTGAAAGCGATTCTTGAGA+AGG 0.565310 4.1:+37685994 MS.gene67387:CDS
GAGGACCGCAACGACTGTTG+TGG 0.566836 4.1:-37687369 None:intergenic
GCAGAGTCTTGTGGTAGTAG+AGG 0.567525 4.1:+37686081 MS.gene67387:CDS
ATTAGAAGCAGGTAGTAGCT+TGG 0.570550 4.1:+37685904 MS.gene67387:CDS
TGTGTGTAAGGCAGTGGTGT+TGG 0.573386 4.1:-37685843 None:intergenic
CTGCACCAGTAAGGGCTCAA+AGG 0.574302 4.1:+37684923 MS.gene67387:CDS
TTCATATTGCTGCTAAACAA+GGG 0.576566 4.1:+37685214 MS.gene67387:CDS
ACAGTTGATGGTGCTGAAGA+GGG 0.580772 4.1:+37685036 MS.gene67387:CDS
ATATTTGCAAAGCAGAATCA+AGG 0.582207 4.1:+37685072 MS.gene67387:CDS
AACCAGGAAGGGAAGAACTC+AGG 0.589165 4.1:+37686174 MS.gene67387:CDS
TCAGTCCTTGTAACAACACC+AGG 0.589412 4.1:-37686019 None:intergenic
CTCAACAAAATGCACACAGA+AGG 0.589714 4.1:+37687326 MS.gene67387:CDS
GGCATGGCAGTAAACAAAAG+TGG 0.596158 4.1:+37687083 MS.gene67387:CDS
GCTCTTGCTGCCGAATGTAA+CGG 0.602344 4.1:-37684988 None:intergenic
GGGACAGACGGCGCTTCACA+TGG 0.602708 4.1:+37686048 MS.gene67387:CDS
GAGTGTGTTCTAGTTGGTGA+TGG 0.607313 4.1:-37687265 None:intergenic
TCATATTGCTGCTAAACAAG+GGG 0.612141 4.1:+37685215 MS.gene67387:CDS
TTGCATATAGCAACCAGGAA+GGG 0.612446 4.1:+37686163 MS.gene67387:CDS
CAGCGTTGCATATAGCAACC+AGG 0.616173 4.1:+37686158 MS.gene67387:CDS
TGTGAAGGGGCAGAGTCTTG+TGG 0.617503 4.1:+37686072 MS.gene67387:CDS
TTCTGAATTGTCAATGACTG+TGG 0.617789 4.1:+37685814 MS.gene67387:CDS
TTACACACAGCTGCAACACA+AGG 0.627719 4.1:+37685857 MS.gene67387:CDS
GTTGCATATAGCAACCAGGA+AGG 0.628632 4.1:+37686162 MS.gene67387:CDS
GTCCACGAATTGGCCTGGGA+CGG 0.630380 4.1:-37687423 None:intergenic
ACAAAGTGAAACAAATGGCA+TGG 0.631554 4.1:+37687067 MS.gene67387:CDS
CTATTATTAACAAACTAATG+TGG 0.644964 4.1:+37687621 MS.gene67387:CDS
TAGAACACACTCGTCAAACA+CGG 0.646022 4.1:+37687276 MS.gene67387:CDS
ACGATGAATACTAGAAACGC+AGG 0.649551 4.1:-37687503 None:intergenic
AAAAGCATTCTTACAGAACA+CGG 0.650500 4.1:+37687152 MS.gene67387:CDS
CGTTGCGGTCCTCATAGCAA+CGG 0.655824 4.1:+37687379 MS.gene67387:CDS
AGATCCATCAACAATAAACA+TGG 0.658313 4.1:+37686117 MS.gene67387:CDS
AAACTCCACAACAGTCGTTG+CGG 0.658814 4.1:+37687364 MS.gene67387:CDS
TTGAACCACCACAACCGCGA+GGG 0.673202 4.1:-37687552 None:intergenic
AAATGACGAAACAATTGACA+GGG 0.680740 4.1:+37684950 MS.gene67387:CDS
TTTGCAAAGCAGAATCAAGG+TGG 0.681219 4.1:+37685075 MS.gene67387:CDS
TTTGAACCACCACAACCGCG+AGG 0.726688 4.1:-37687553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCTATTATTCAAGTTT+AGG - chr4.1:37685660-37685679 None:intergenic 15.0%
!! AATAATAGAAAATTGTTGCA+AGG + chr4.1:37685667-37685686 MS.gene67387:intron 20.0%
!! AATTTGAACAGAGTTTATAA+AGG - chr4.1:37686572-37686591 None:intergenic 20.0%
!! ATACAATTCAATTATGCATA+AGG - chr4.1:37686949-37686968 None:intergenic 20.0%
!! ATTGTCATCACTTAAAATTT+CGG + chr4.1:37686319-37686338 MS.gene67387:intron 20.0%
!! CTATTATTAACAAACTAATG+TGG + chr4.1:37687621-37687640 MS.gene67387:CDS 20.0%
!! TAATAGATATTTCACTATCT+CGG - chr4.1:37685888-37685907 None:intergenic 20.0%
!! TTAACTCAATCCTAAAAAAT+CGG + chr4.1:37686527-37686546 MS.gene67387:intron 20.0%
!!! AATAAACATGGTTGATAATA+AGG + chr4.1:37686129-37686148 MS.gene67387:CDS 20.0%
!!! AATTTCAGTTCTGTTTTTAT+TGG + chr4.1:37685544-37685563 MS.gene67387:intron 20.0%
!!! ATAAACATGGTTGATAATAA+GGG + chr4.1:37686130-37686149 MS.gene67387:CDS 20.0%
!!! ATAAGATCTTTGATAATTCT+TGG + chr4.1:37686858-37686877 MS.gene67387:intron 20.0%
!!! ATCTATTTTATTTTGAACCA+GGG + chr4.1:37685733-37685752 MS.gene67387:intron 20.0%
!!! TAAGATCTTTGATAATTCTT+GGG + chr4.1:37686859-37686878 MS.gene67387:intron 20.0%
!!! TATCTATTTTATTTTGAACC+AGG + chr4.1:37685732-37685751 MS.gene67387:intron 20.0%
! AATCCAAAAAAAGTTCCTAA+AGG + chr4.1:37687446-37687465 MS.gene67387:CDS 25.0%
! ACACTTTGAATAAAGATGAA+GGG - chr4.1:37686394-37686413 None:intergenic 25.0%
! AGTAAATGTTAGCAGAATTA+TGG - chr4.1:37686218-37686237 None:intergenic 25.0%
! GACAATTTAATCAACAAAGA+TGG - chr4.1:37686305-37686324 None:intergenic 25.0%
! GCTACTATATATATATTCCA+TGG + chr4.1:37686808-37686827 MS.gene67387:intron 25.0%
! TATGAAGTACAAATGGAATT+AGG - chr4.1:37686788-37686807 None:intergenic 25.0%
! TTGAATTGTATCTACCTATT+TGG + chr4.1:37686958-37686977 MS.gene67387:intron 25.0%
!! AATTAACCTCTATCAACTTT+TGG + chr4.1:37687016-37687035 MS.gene67387:intron 25.0%
!!! ACATTCTAAACCGATTTTTT+AGG - chr4.1:37686540-37686559 None:intergenic 25.0%
!!! TGTAAGAATGCTTTTTACTT+CGG - chr4.1:37687147-37687166 None:intergenic 25.0%
!!! TTTCCTTTAGGAACTTTTTT+TGG - chr4.1:37687452-37687471 None:intergenic 25.0%
AAAAGTCTATGACTGCAATT+TGG - chr4.1:37685444-37685463 None:intergenic 30.0%
AAAATGACGAAACAATTGAC+AGG + chr4.1:37684949-37684968 MS.gene67387:CDS 30.0%
AAATGACGAAACAATTGACA+GGG + chr4.1:37684950-37684969 MS.gene67387:CDS 30.0%
AACAAGATTTGATCAGAGTT+CGG - chr4.1:37685702-37685721 None:intergenic 30.0%
AACTCAGGTAAATTTGACTA+TGG + chr4.1:37686189-37686208 MS.gene67387:intron 30.0%
AAGATAGTGTTTACAAGAAG+TGG + chr4.1:37686258-37686277 MS.gene67387:intron 30.0%
AGATATCGTAAAGATCCTAA+TGG + chr4.1:37685784-37685803 MS.gene67387:intron 30.0%
AGATCCATCAACAATAAACA+TGG + chr4.1:37686117-37686136 MS.gene67387:CDS 30.0%
AGTATTCATCGTGTTTGATT+CGG + chr4.1:37687514-37687533 MS.gene67387:CDS 30.0%
ATATTTGCAAAGCAGAATCA+AGG + chr4.1:37685072-37685091 MS.gene67387:CDS 30.0%
ATGGTTATGTTGATATGGTT+AGG + chr4.1:37685127-37685146 MS.gene67387:CDS 30.0%
ATGTAAAGAACATAAGACAC+CGG + chr4.1:37686708-37686727 MS.gene67387:intron 30.0%
ATTGGGTACTATGAGTTATT+GGG + chr4.1:37687763-37687782 MS.gene67387:CDS 30.0%
CAACTCGTGTTTAATTACTA+CGG - chr4.1:37685626-37685645 None:intergenic 30.0%
CAATTGGGGTAACTATTATT+GGG + chr4.1:37687720-37687739 MS.gene67387:CDS 30.0%
CACACTTTGAATAAAGATGA+AGG - chr4.1:37686395-37686414 None:intergenic 30.0%
CTTTATTCAAAGTGTGACTT+GGG + chr4.1:37686399-37686418 MS.gene67387:intron 30.0%
GAAAATAACACACATCACAA+AGG - chr4.1:37685518-37685537 None:intergenic 30.0%
GTGAAATATCTATTAGAAGC+AGG + chr4.1:37685893-37685912 MS.gene67387:CDS 30.0%
GTGTCATAAAAATCTACTCA+AGG - chr4.1:37685477-37685496 None:intergenic 30.0%
GTTACAAGGACTGATAAAAA+GGG + chr4.1:37686028-37686047 MS.gene67387:CDS 30.0%
TAGTAGCTATGAAGTACAAA+TGG - chr4.1:37686795-37686814 None:intergenic 30.0%
TATTATTGGGACTACCATAA+TGG + chr4.1:37687733-37687752 MS.gene67387:CDS 30.0%
TCAACCATGTTTATTGTTGA+TGG - chr4.1:37686124-37686143 None:intergenic 30.0%
TCTTTATTCAAAGTGTGACT+TGG + chr4.1:37686398-37686417 MS.gene67387:intron 30.0%
TGAGTATGGTTATGTTGATA+TGG + chr4.1:37685122-37685141 MS.gene67387:CDS 30.0%
TGGTTATGTTGATATGGTTA+GGG + chr4.1:37685128-37685147 MS.gene67387:CDS 30.0%
TGTTACAAGGACTGATAAAA+AGG + chr4.1:37686027-37686046 MS.gene67387:CDS 30.0%
TTCATATTGCTGCTAAACAA+GGG + chr4.1:37685214-37685233 MS.gene67387:CDS 30.0%
! TGTTCTTTGTGTTTTGTGAA+AGG + chr4.1:37685277-37685296 MS.gene67387:intron 30.0%
! TGTTTTCGGTTGAGATTTTA+TGG - chr4.1:37687195-37687214 None:intergenic 30.0%
!! AAAAGCATTCTTACAGAACA+CGG + chr4.1:37687152-37687171 MS.gene67387:CDS 30.0%
!! CAGATTATCAAGTTGATACT+TGG + chr4.1:37687044-37687063 MS.gene67387:intron 30.0%
!!! ATTTTATGGATTTGCTGCTT+TGG - chr4.1:37687181-37687200 None:intergenic 30.0%
!!! CTTTGTCTTTTTTAGTTGTG+GGG + chr4.1:37687678-37687697 MS.gene67387:intron 30.0%
!!! GACTGTTTGTTTTAATTCTC+TGG - chr4.1:37687225-37687244 None:intergenic 30.0%
!!! GCTTATTTCTGTGTCATTTT+TGG + chr4.1:37687655-37687674 MS.gene67387:intron 30.0%
!!! GCTTTGTCTTTTTTAGTTGT+GGG + chr4.1:37687677-37687696 MS.gene67387:intron 30.0%
ACAAAGTGAAACAAATGGCA+TGG + chr4.1:37687067-37687086 MS.gene67387:CDS 35.0%
ACAAGGGGATTTAGGTATTA+TGG + chr4.1:37685230-37685249 MS.gene67387:intron 35.0%
ACCATAATGGCTACAACATT+GGG + chr4.1:37687746-37687765 MS.gene67387:CDS 35.0%
ATAGTACCAAGTCTATCCAT+CGG - chr4.1:37686488-37686507 None:intergenic 35.0%
ATCCAGCACTTAATCCAAAT+AGG - chr4.1:37686975-37686994 None:intergenic 35.0%
ATTCAGAATGAGCTTCCATT+AGG - chr4.1:37685802-37685821 None:intergenic 35.0%
CAAAGCAAAGAAGCAAATGA+TGG + chr4.1:37687598-37687617 MS.gene67387:CDS 35.0%
CATTGGGTACTATGAGTTAT+TGG + chr4.1:37687762-37687781 MS.gene67387:CDS 35.0%
CCAAAATTGGTATGTGTAAG+GGG - chr4.1:37686435-37686454 None:intergenic 35.0%
CCCAAAATTGGTATGTGTAA+GGG - chr4.1:37686436-37686455 None:intergenic 35.0%
CTTCATATTGCTGCTAAACA+AGG + chr4.1:37685213-37685232 MS.gene67387:CDS 35.0%
CTTGGACAAAGTGAAACAAA+TGG + chr4.1:37687062-37687081 MS.gene67387:CDS 35.0%
GCAACAATTGCTAGAAGTAA+TGG + chr4.1:37685926-37685945 MS.gene67387:CDS 35.0%
GCAATTGGGGTAACTATTAT+TGG + chr4.1:37687719-37687738 MS.gene67387:CDS 35.0%
GCTGGAATTAAAGCAAGAAA+TGG + chr4.1:37685180-37685199 MS.gene67387:CDS 35.0%
TACCATAATGGCTACAACAT+TGG + chr4.1:37687745-37687764 MS.gene67387:CDS 35.0%
TACCTATTTGGATTAAGTGC+TGG + chr4.1:37686970-37686989 MS.gene67387:intron 35.0%
TACGTGGATAATCTGTTAGA+TGG + chr4.1:37686461-37686480 MS.gene67387:intron 35.0%
TAGTTGTGGGGAAAAAACAA+AGG + chr4.1:37687690-37687709 MS.gene67387:intron 35.0%
TATTATGATCTTGCTGATGC+TGG + chr4.1:37685162-37685181 MS.gene67387:CDS 35.0%
TCATATTGCTGCTAAACAAG+GGG + chr4.1:37685215-37685234 MS.gene67387:CDS 35.0%
TGATTTACTGACAAGTAGAC+AGG + chr4.1:37685577-37685596 MS.gene67387:intron 35.0%
TGTCTTCGCAATCATAATTG+AGG - chr4.1:37685399-37685418 None:intergenic 35.0%
TTAACTCAATCCTACAAACC+CGG + chr4.1:37686348-37686367 MS.gene67387:intron 35.0%
TTACTACGGTTCAGTTTACA+AGG - chr4.1:37685612-37685631 None:intergenic 35.0%
TTCTGAATTGTCAATGACTG+TGG + chr4.1:37685814-37685833 MS.gene67387:CDS 35.0%
TTTGTGAAAGGAGTAATGAG+TGG + chr4.1:37685289-37685308 MS.gene67387:intron 35.0%
! CCCTTACACATACCAATTTT+GGG + chr4.1:37686433-37686452 MS.gene67387:intron 35.0%
! CCTTACACATACCAATTTTG+GGG + chr4.1:37686434-37686453 MS.gene67387:intron 35.0%
! GTATGTGTAAGGGGTATAAA+GGG - chr4.1:37686426-37686445 None:intergenic 35.0%
! TCTCTTTTCAATGCAAGACT+TGG + chr4.1:37686595-37686614 MS.gene67387:intron 35.0%
! TCTTTGAAGGATACAGTTGA+TGG + chr4.1:37685024-37685043 MS.gene67387:CDS 35.0%
! TTTTTGGATTGTCCACGAAT+TGG - chr4.1:37687436-37687455 None:intergenic 35.0%
!! GATTAAGTGCTGGATTATTC+AGG + chr4.1:37686980-37686999 MS.gene67387:intron 35.0%
!! GCATTTCCAAAAGTTGATAG+AGG - chr4.1:37687025-37687044 None:intergenic 35.0%
!!! GGCTTTGTCTTTTTTAGTTG+TGG + chr4.1:37687676-37687695 MS.gene67387:intron 35.0%
AACTCTCACATCTCACAAAC+CGG - chr4.1:37686370-37686389 None:intergenic 40.0%
AAGGCACAAAATGAGCAACT+AGG - chr4.1:37685499-37685518 None:intergenic 40.0%
AATGCAAAACATGCACACCA+TGG - chr4.1:37686828-37686847 None:intergenic 40.0%
ACCCAATGTTGTAGCCATTA+TGG - chr4.1:37687750-37687769 None:intergenic 40.0%
ACGATGAATACTAGAAACGC+AGG - chr4.1:37687506-37687525 None:intergenic 40.0%
ATTAGAAGCAGGTAGTAGCT+TGG + chr4.1:37685904-37685923 MS.gene67387:CDS 40.0%
CCCCAAAATTGGTATGTGTA+AGG - chr4.1:37686437-37686456 None:intergenic 40.0%
CTCAACAAAATGCACACAGA+AGG + chr4.1:37687326-37687345 MS.gene67387:CDS 40.0%
CTTTATGTTGCTGCTGAGTA+TGG + chr4.1:37685108-37685127 MS.gene67387:CDS 40.0%
GACTGATAAAAAGGGACAGA+CGG + chr4.1:37686036-37686055 MS.gene67387:CDS 40.0%
GGTGCTTTGTAGGATAATAG+CGG - chr4.1:37686628-37686647 None:intergenic 40.0%
GTGCTTTGTAGGATAATAGC+GGG - chr4.1:37686627-37686646 None:intergenic 40.0%
GTTCCTAAAGGAAAAACCCT+TGG + chr4.1:37687458-37687477 MS.gene67387:CDS 40.0%
TAATCTGTTAGATGGTCCGA+TGG + chr4.1:37686469-37686488 MS.gene67387:intron 40.0%
TAGAACACACTCGTCAAACA+CGG + chr4.1:37687276-37687295 MS.gene67387:CDS 40.0%
TGCAAGAAATGGACATTTGG+AGG + chr4.1:37685970-37685989 MS.gene67387:CDS 40.0%
TGCTGGATTATTCAGGATAG+AGG + chr4.1:37686987-37687006 MS.gene67387:intron 40.0%
TGCTTTGTAGGATAATAGCG+GGG - chr4.1:37686626-37686645 None:intergenic 40.0%
TGGTAAAACAGCTCTGCATT+CGG + chr4.1:37685946-37685965 MS.gene67387:CDS 40.0%
TGTGAAAGCGATTCTTGAGA+AGG + chr4.1:37685994-37686013 MS.gene67387:CDS 40.0%
TTAGACACAGCTGAGAAAAC+AGG + chr4.1:37687116-37687135 MS.gene67387:CDS 40.0%
TTGCATATAGCAACCAGGAA+GGG + chr4.1:37686163-37686182 MS.gene67387:CDS 40.0%
TTGTGGGGAAAAAACAAAGG+TGG + chr4.1:37687693-37687712 MS.gene67387:CDS 40.0%
TTTGACGAGTGTGTTCTAGT+TGG - chr4.1:37687274-37687293 None:intergenic 40.0%
TTTGCAAAGCAGAATCAAGG+TGG + chr4.1:37685075-37685094 MS.gene67387:CDS 40.0%
! AAACAAAGGTGGCTTGCAAT+TGG + chr4.1:37687704-37687723 MS.gene67387:CDS 40.0%
! AACAAAGGTGGCTTGCAATT+GGG + chr4.1:37687705-37687724 MS.gene67387:CDS 40.0%
! CCCCTTACACATACCAATTT+TGG + chr4.1:37686432-37686451 MS.gene67387:intron 40.0%
! GGTATGTGTAAGGGGTATAA+AGG - chr4.1:37686427-37686446 None:intergenic 40.0%
!! GTTCTGAAGCTATGTTTGCT+TGG - chr4.1:37687484-37687503 None:intergenic 40.0%
!!! ACACATACCAATTTTGGGGT+TGG + chr4.1:37686438-37686457 MS.gene67387:intron 40.0%
AAACTCCACAACAGTCGTTG+CGG + chr4.1:37687364-37687383 MS.gene67387:CDS 45.0%
AAGCTATGTTTGCTTGGCCA+AGG - chr4.1:37687478-37687497 None:intergenic 45.0%
ACTCTCACATCTCACAAACC+GGG - chr4.1:37686369-37686388 None:intergenic 45.0%
AGACCGCAACATGACTTCAA+CGG - chr4.1:37685335-37685354 None:intergenic 45.0%
AGCTATGTTTGCTTGGCCAA+GGG - chr4.1:37687477-37687496 None:intergenic 45.0%
ATCTCACAAACCGGGTTTGT+AGG - chr4.1:37686361-37686380 None:intergenic 45.0%
CGATGATACGCCGTTACATT+CGG + chr4.1:37684978-37684997 MS.gene67387:CDS 45.0%
CGTATGATACCTATCAGTGC+CGG - chr4.1:37686730-37686749 None:intergenic 45.0%
CTACGGTTCAGTTTACAAGG+CGG - chr4.1:37685609-37685628 None:intergenic 45.0%
GCTGCTAAACAAGGGGATTT+AGG + chr4.1:37685222-37685241 MS.gene67387:CDS 45.0%
GGCATGGCAGTAAACAAAAG+TGG + chr4.1:37687083-37687102 MS.gene67387:CDS 45.0%
GGCTGCAAGAAATGGACATT+TGG + chr4.1:37685967-37685986 MS.gene67387:CDS 45.0%
GTCGTATCAGGTGTTTGTGT+CGG - chr4.1:37686655-37686674 None:intergenic 45.0%
GTTGCATATAGCAACCAGGA+AGG + chr4.1:37686162-37686181 MS.gene67387:CDS 45.0%
TACGGTTCAGTTTACAAGGC+GGG - chr4.1:37685608-37685627 None:intergenic 45.0%
TCAGTCCTTGTAACAACACC+AGG - chr4.1:37686022-37686041 None:intergenic 45.0%
TGGGAACATGGCTTCTTTGA+AGG + chr4.1:37685011-37685030 MS.gene67387:CDS 45.0%
TTACACACAGCTGCAACACA+AGG + chr4.1:37685857-37685876 MS.gene67387:CDS 45.0%
TTCTTCCTTTGAGCCCTTAC+TGG - chr4.1:37684931-37684950 None:intergenic 45.0%
TTGCCGTTGAAGTCATGTTG+CGG + chr4.1:37685329-37685348 MS.gene67387:intron 45.0%
TTGTGTTGCAGCTGTGTGTA+AGG - chr4.1:37685858-37685877 None:intergenic 45.0%
! ACAAAGGTGGCTTGCAATTG+GGG + chr4.1:37687706-37687725 MS.gene67387:CDS 45.0%
! TGGCCAAGGGTTTTTCCTTT+AGG - chr4.1:37687464-37687483 None:intergenic 45.0%
!! ACAGTTGATGGTGCTGAAGA+GGG + chr4.1:37685036-37685055 MS.gene67387:CDS 45.0%
!! GAGTGTGTTCTAGTTGGTGA+TGG - chr4.1:37687268-37687287 None:intergenic 45.0%
!! TACAGTTGATGGTGCTGAAG+AGG + chr4.1:37685035-37685054 MS.gene67387:CDS 45.0%
!! TCTCTGGTTGCAGCTGTTTT+CGG - chr4.1:37687209-37687228 None:intergenic 45.0%
AACCAGGAAGGGAAGAACTC+AGG + chr4.1:37686174-37686193 MS.gene67387:CDS 50.0%
ACTGTCAGAACAGCAAACCC+TGG - chr4.1:37685753-37685772 None:intergenic 50.0%
CAGCGTTGCATATAGCAACC+AGG + chr4.1:37686158-37686177 MS.gene67387:CDS 50.0%
CCACGTACCAACCCCAAAAT+TGG - chr4.1:37686448-37686467 None:intergenic 50.0%
CGAATGCAACCGTTGCTATG+AGG - chr4.1:37687391-37687410 None:intergenic 50.0%
CTGCATTCGGCTGCAAGAAA+TGG + chr4.1:37685959-37685978 MS.gene67387:CDS 50.0%
GATGGTCCGATGGATAGACT+TGG + chr4.1:37686479-37686498 MS.gene67387:intron 50.0%
GCTCTTGCTGCCGAATGTAA+CGG - chr4.1:37684991-37685010 None:intergenic 50.0%
GTCTGTGTCAACGTCGTATC+AGG - chr4.1:37686667-37686686 None:intergenic 50.0%
TACATTCGGCAGCAAGAGCT+GGG + chr4.1:37684992-37685011 MS.gene67387:CDS 50.0%
TACCTGAGTTCTTCCCTTCC+TGG - chr4.1:37686179-37686198 None:intergenic 50.0%
TCAGGTGTTTGTGTCGGAGT+CGG - chr4.1:37686649-37686668 None:intergenic 50.0%
TGTGTGTAAGGCAGTGGTGT+TGG - chr4.1:37685846-37685865 None:intergenic 50.0%
TTACATTCGGCAGCAAGAGC+TGG + chr4.1:37684991-37685010 MS.gene67387:CDS 50.0%
! GATTGTCCACGAATTGGCCT+GGG - chr4.1:37687430-37687449 None:intergenic 50.0%
! GCAGAGTCTTGTGGTAGTAG+AGG + chr4.1:37686081-37686100 MS.gene67387:CDS 50.0%
! TGTAAGGCAGTGGTGTTGGA+TGG - chr4.1:37685842-37685861 None:intergenic 50.0%
!! AGGAGCCTGGTGTTGTTACA+AGG + chr4.1:37686014-37686033 MS.gene67387:CDS 50.0%
!! CAAACACGGAGAAGCGTTCA+AGG + chr4.1:37687290-37687309 MS.gene67387:CDS 50.0%
!! CATAAGACACCGGCACTGAT+AGG + chr4.1:37686718-37686737 MS.gene67387:intron 50.0%
!!! CCAATTTTGGGGTTGGTACG+TGG + chr4.1:37686445-37686464 MS.gene67387:intron 50.0%
AGCTGAAACTGTGCAGCCTC+AGG + chr4.1:37684900-37684919 MS.gene67387:CDS 55.0%
CGCTTCACATGGCTGTGAAG+GGG + chr4.1:37686059-37686078 MS.gene67387:CDS 55.0%
CGTTGCGGTCCTCATAGCAA+CGG + chr4.1:37687379-37687398 MS.gene67387:CDS 55.0%
CTGCACCAGTAAGGGCTCAA+AGG + chr4.1:37684923-37684942 MS.gene67387:CDS 55.0%
GCGATTCTTGAGAAGGAGCC+TGG + chr4.1:37686001-37686020 MS.gene67387:CDS 55.0%
GCGCTTCACATGGCTGTGAA+GGG + chr4.1:37686058-37686077 MS.gene67387:CDS 55.0%
GGATTGTCCACGAATTGGCC+TGG - chr4.1:37687431-37687450 None:intergenic 55.0%
TGCAGCTGTGTGTAAGGCAG+TGG - chr4.1:37685852-37685871 None:intergenic 55.0%
TGTGAAGGGGCAGAGTCTTG+TGG + chr4.1:37686072-37686091 MS.gene67387:CDS 55.0%
TTGAACCACCACAACCGCGA+GGG - chr4.1:37687555-37687574 None:intergenic 55.0%
TTTCATCTCCCTCGCGGTTG+TGG + chr4.1:37687544-37687563 MS.gene67387:CDS 55.0%
TTTGAACCACCACAACCGCG+AGG - chr4.1:37687556-37687575 None:intergenic 55.0%
! TGTCGGAGTCGGTGCTTTGT+AGG - chr4.1:37686638-37686657 None:intergenic 55.0%
AGCCTCAGGCTGCACCAGTA+AGG + chr4.1:37684914-37684933 MS.gene67387:CDS 60.0%
GAGGACCGCAACGACTGTTG+TGG - chr4.1:37687372-37687391 None:intergenic 60.0%
GCCTCAGGCTGCACCAGTAA+GGG + chr4.1:37684915-37684934 MS.gene67387:CDS 60.0%
GGCAGCAAGAGCTGGGAACA+TGG + chr4.1:37684999-37685018 MS.gene67387:CDS 60.0%
GGCGCTTCACATGGCTGTGA+AGG + chr4.1:37686057-37686076 MS.gene67387:CDS 60.0%
TTGGCCTGGGACGGTGAAGA+TGG - chr4.1:37687417-37687436 None:intergenic 60.0%
! CGCGCTTTTCATCTCCCTCG+CGG + chr4.1:37687538-37687557 MS.gene67387:CDS 60.0%
! GTCCACGAATTGGCCTGGGA+CGG - chr4.1:37687426-37687445 None:intergenic 60.0%
CACCGTCCCAGGCCAATTCG+TGG + chr4.1:37687421-37687440 MS.gene67387:CDS 65.0%
CATCTCCCTCGCGGTTGTGG+TGG + chr4.1:37687547-37687566 MS.gene67387:CDS 65.0%
GCAGCCATCTTCACCGTCCC+AGG + chr4.1:37687410-37687429 MS.gene67387:CDS 65.0%
GCCCTTACTGGTGCAGCCTG+AGG - chr4.1:37684919-37684938 None:intergenic 65.0%
GGGACAGACGGCGCTTCACA+TGG + chr4.1:37686048-37686067 MS.gene67387:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 37684889 37687792 37684889 ID=MS.gene67387
chr4.1 mRNA 37684889 37687792 37684889 ID=MS.gene67387.t1;Parent=MS.gene67387
chr4.1 exon 37684889 37685243 37684889 ID=MS.gene67387.t1.exon1;Parent=MS.gene67387.t1
chr4.1 CDS 37684889 37685243 37684889 ID=cds.MS.gene67387.t1;Parent=MS.gene67387.t1
chr4.1 exon 37685786 37686195 37685786 ID=MS.gene67387.t1.exon2;Parent=MS.gene67387.t1
chr4.1 CDS 37685786 37686195 37685786 ID=cds.MS.gene67387.t1;Parent=MS.gene67387.t1
chr4.1 exon 37687047 37687642 37687047 ID=MS.gene67387.t1.exon3;Parent=MS.gene67387.t1
chr4.1 CDS 37687047 37687642 37687047 ID=cds.MS.gene67387.t1;Parent=MS.gene67387.t1
chr4.1 exon 37687693 37687792 37687693 ID=MS.gene67387.t1.exon4;Parent=MS.gene67387.t1
chr4.1 CDS 37687693 37687792 37687693 ID=cds.MS.gene67387.t1;Parent=MS.gene67387.t1
Gene Sequence

>MS.gene67387

ATGGACAAAGAAGCTGAAACTGTGCAGCCTCAGGCTGCACCAGTAAGGGCTCAAAGGAAGAAAATGACGAAACAATTGACAGGGAAGCGCGATGATACGCCGTTACATTCGGCAGCAAGAGCTGGGAACATGGCTTCTTTGAAGGATACAGTTGATGGTGCTGAAGAGGGTAAACTGCGCGAAATATTTGCAAAGCAGAATCAAGGTGGAGAAACAGCACTTTATGTTGCTGCTGAGTATGGTTATGTTGATATGGTTAGGGAGATGATTCAGTATTATGATCTTGCTGATGCTGGAATTAAAGCAAGAAATGGTTTTGATGCACTTCATATTGCTGCTAAACAAGGGGATTTAGGTATTATGGCTTTTATGTAGTTTTTCAATTGCTTGTTCTTTGTGTTTTGTGAAAGGAGTAATGAGTGGAATCTCGATATTTTAAATTGCCGTTGAAGTCATGTTGCGGTCTTTGATATTGTAGAGAATCATAGTCAAAAGTTGCTGATGCAGCCTCAATTATGATTGCGAAGACATCAAAAATCTTGATGTTGCAATCCAAATTGCAGTCATAGACTTTTTAAAAGAAAACCTTGAGTAGATTTTTATGACACCTAGTTGCTCATTTTGTGCCTTTGTGATGTGTGTTATTTTCAAATGAAATTTCAGTTCTGTTTTTATTGGATATGACTTATGATTTACTGACAAGTAGACAGGTCGCTCCCGCCTTGTAAACTGAACCGTAGTAATTAAACACGAGTTGCAATTTGTAATCCTAAACTTGAATAATAGAAAATTGTTGCAAGGCACAATTAGCCGAACTCTGATCAAATCTTGTTTGCATCTTCGTATCTATTTTATTTTGAACCAGGGTTTGCTGTTCTGACAGTTTCTTTGTTGTAGATATCGTAAAGATCCTAATGGAAGCTCATTCTGAATTGTCAATGACTGTGGATCCATCCAACACCACTGCCTTACACACAGCTGCAACACAAGGACATACCGAGATAGTGAAATATCTATTAGAAGCAGGTAGTAGCTTGGCAACAATTGCTAGAAGTAATGGTAAAACAGCTCTGCATTCGGCTGCAAGAAATGGACATTTGGAGGTTGTGAAAGCGATTCTTGAGAAGGAGCCTGGTGTTGTTACAAGGACTGATAAAAAGGGACAGACGGCGCTTCACATGGCTGTGAAGGGGCAGAGTCTTGTGGTAGTAGAGGAGTTGATAAAAGCAGATCCATCAACAATAAACATGGTTGATAATAAGGGTAATACAGCGTTGCATATAGCAACCAGGAAGGGAAGAACTCAGGTAAATTTGACTATGGCTGCCATAATTCTGCTAACATTTACTCAAACAATTACTTCATATATAAGATAGTGTTTACAAGAAGTGGTTTGTCATGTCATTTAGATCACCATCTTTGTTGATTAAATTGTCATCACTTAAAATTTCGGATGAGCTTAACTCAATCCTACAAACCCGGTTTGTGAGATGTGAGAGTTGCCCTTCATCTTTATTCAAAGTGTGACTTGGGTCCCTTTATACCCCTTACACATACCAATTTTGGGGTTGGTACGTGGATAATCTGTTAGATGGTCCGATGGATAGACTTGGTACTATCTTAGAACTTAGATTGTGCTTAACTCAATCCTAAAAAATCGGTTTAGAATGTGATGAGTGTCCTTTATAAACTCTGTTCAAATTTTATCTCTTTTCAATGCAAGACTTGGATTTTCCCCGCTATTATCCTACAAAGCACCGACTCCGACACAAACACCTGATACGACGTTGACACAGACACAAACATGTCGACACTGTTAATGTAAAGAACATAAGACACCGGCACTGATAGGTATCATACGAGTTCAGACAGACACGTGTCAAACACGAAGACACACCTAATTCCATTTGTACTTCATAGCTACTATATATATATTCCATGGTGTGCATGTTTTGCATTGAAAAGAAGAATAAGATCTTTGATAATTCTTGGGAATGAAGAACATGAATATAATTCTAATAAGTAATAACATAGAGCATAGAGCATGATATGATATTCCTTATGCATAATTGAATTGTATCTACCTATTTGGATTAAGTGCTGGATTATTCAGGATAGAGGCTAAATAATTAACCTCTATCAACTTTTGGAAATGCAGATTATCAAGTTGATACTTGGACAAAGTGAAACAAATGGCATGGCAGTAAACAAAAGTGGCGAAACAGCATTAGACACAGCTGAGAAAACAGGAAATTCCGAAGTAAAAAGCATTCTTACAGAACACGGTATCCAAAGCAGCAAATCCATAAAATCTCAACCGAAAACAGCTGCAACCAGAGAATTAAAACAAACAGTCAGTGACATAAAGCATGAAGTCCATCACCAACTAGAACACACTCGTCAAACACGGAGAAGCGTTCAAGGAATAGCAAAACGTCTCAACAAAATGCACACAGAAGGACTCAACAATGCGATAAACTCCACAACAGTCGTTGCGGTCCTCATAGCAACGGTTGCATTCGCAGCCATCTTCACCGTCCCAGGCCAATTCGTGGACAATCCAAAAAAAGTTCCTAAAGGAAAAACCCTTGGCCAAGCAAACATAGCTTCAGAACCTGCGTTTCTAGTATTCATCGTGTTTGATTCGGTCGCGCTTTTCATCTCCCTCGCGGTTGTGGTGGTTCAAACATCAATAGTTGTTGTTGAAAGCAAAGCAAAGAAGCAAATGATGGCTATTATTAACAAACTAATGTGGTTAGCTTGTGTGCTTATTTCTGTGTCATTTTTGGCTTTGTCTTTTTTAGTTGTGGGGAAAAAACAAAGGTGGCTTGCAATTGGGGTAACTATTATTGGGACTACCATAATGGCTACAACATTGGGTACTATGAGTTATTGGGTTATTAG

Protein sequence

>MS.gene67387.t1

MDKEAETVQPQAAPVRAQRKKMTKQLTGKRDDTPLHSAARAGNMASLKDTVDGAEEGKLREIFAKQNQGGETALYVAAEYGYVDMVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDIVKILMEAHSELSMTVDPSNTTALHTAATQGHTEIVKYLLEAGSSLATIARSNGKTALHSAARNGHLEVVKAILEKEPGVVTRTDKKGQTALHMAVKGQSLVVVEELIKADPSTINMVDNKGNTALHIATRKGRTQIIKLILGQSETNGMAVNKSGETALDTAEKTGNSEVKSILTEHGIQSSKSIKSQPKTAATRELKQTVSDIKHEVHHQLEHTRQTRRSVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDNPKKVPKGKTLGQANIASEPAFLVFIVFDSVALFISLAVVVVQTSIVVVESKAKKQMMAIINKLMCCGEKTKVACNWGNYYWDYHNGYNIGYYELLGY