Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67785.t1 | XP_013458796.1 | 96.6 | 205 | 6 | 1 | 1 | 205 | 1 | 204 | 2.60E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67785.t1 | A0A072UUU4 | 96.6 | 205 | 6 | 1 | 1 | 205 | 1 | 204 | 1.9e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene67785 | 0.801258 | 9.80E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene67785 | 0.811287 | 7.55E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene67785 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene67785 | 0.829763 | 4.29E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene67785 | 0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene67785 | 0.834537 | 2.83E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene67785 | 0.809485 | 1.85E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene67785 | 0.806271 | 8.92E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene67785 | 0.802858 | 4.60E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene67785 | 0.803305 | 3.72E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene67785 | 0.802089 | 6.62E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene67785 | 0.812854 | 3.44E-51 | -1.69E-46 |
| MS.gene050987 | MS.gene67785 | 0.808433 | 3.10E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene67785 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene67785 | 0.806126 | 9.57E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene67785 | 0.806632 | 7.49E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene67785 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene67785 | 0.806097 | 9.70E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene67785 | 0.839866 | 1.23E-57 | -1.69E-46 |
| MS.gene053085 | MS.gene67785 | 0.809029 | 2.31E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene67785 | 0.808633 | 2.81E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene67785 | 0.811412 | 7.09E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene67785 | 0.804941 | 1.70E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene67785 | 0.819234 | 1.29E-52 | -1.69E-46 |
| MS.gene056589 | MS.gene67785 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene67785 | 0.843707 | 1.19E-58 | -1.69E-46 |
| MS.gene057140 | MS.gene67785 | 0.835083 | 2.06E-56 | -1.69E-46 |
| MS.gene057754 | MS.gene67785 | 0.806213 | 9.17E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene67785 | 0.801812 | 7.55E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene67785 | 0.828184 | 1.04E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene67785 | 0.820872 | 5.45E-53 | -1.69E-46 |
| MS.gene059713 | MS.gene67785 | 0.801846 | 7.43E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene67785 | 0.808242 | 3.41E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene67785 | 0.80678 | 6.97E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene67785 | 0.81719 | 3.75E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene67785 | 0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene67785 | 0.803271 | 3.78E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67785.t1 | MTR_3g006790 | 96.585 | 205 | 6 | 1 | 1 | 205 | 1 | 204 | 1.46e-145 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67785.t1 | AT5G04910 | 69.231 | 182 | 56 | 0 | 24 | 205 | 41 | 222 | 1.90e-83 | 247 |
Find 43 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAGAAGATTTGGAATT+TGG | 0.083112 | 3.3:-2760801 | MS.gene67785:CDS |
| ACGAAGCAAAACAACGATTT+TGG | 0.239125 | 3.3:+2760728 | None:intergenic |
| CGGAGTGATGGAAGAAGATT+TGG | 0.282022 | 3.3:-2760808 | None:intergenic |
| AAGGAGATCACTGAAGCTTC+TGG | 0.308239 | 3.3:-2758069 | MS.gene67785:CDS |
| CATGACTTCTGGAGGGGAAT+TGG | 0.328109 | 3.3:-2759480 | MS.gene67785:CDS |
| TGGAAGAAGATTTGGAATTT+GGG | 0.347258 | 3.3:-2760800 | MS.gene67785:CDS |
| CCTGTTCTTGAACAGCTCTA+AGG | 0.384342 | 3.3:+2759224 | None:intergenic |
| AGATCAATGCGGCTATAGTC+AGG | 0.398263 | 3.3:+2759256 | None:intergenic |
| TGACTATAGCCGCATTGATC+TGG | 0.404819 | 3.3:-2759254 | MS.gene67785:CDS |
| TTGTAAATTTGCAATTATCA+TGG | 0.426145 | 3.3:+2758121 | None:intergenic |
| CCTTAGAGCTGTTCAAGAAC+AGG | 0.429245 | 3.3:-2759224 | MS.gene67785:CDS |
| AGATTTGGAATTTGGGAAGA+AGG | 0.436083 | 3.3:-2760793 | MS.gene67785:CDS |
| AAGCTTATTCCAAACTCAAA+AGG | 0.441845 | 3.3:-2760674 | MS.gene67785:intron |
| GCATGAGTGTGTCCATGTTA+AGG | 0.447012 | 3.3:-2758088 | MS.gene67785:CDS |
| CCGCTTTCTTTAACAGCTGA+AGG | 0.459259 | 3.3:+2758169 | None:intergenic |
| ATCATGGCTTACCAGTCGTT+CGG | 0.468178 | 3.3:+2758137 | None:intergenic |
| TTGGCTTATCAGCAGCTTTG+CGG | 0.476285 | 3.3:-2759461 | MS.gene67785:CDS |
| GAAACAGTGACTCCATTTCA+CGG | 0.495876 | 3.3:+2759284 | None:intergenic |
| TGAAGCTATTAGAGGTGTCC+AGG | 0.497762 | 3.3:-2758001 | MS.gene67785:CDS |
| GCTGTCAATGAAGCTATTAG+AGG | 0.497962 | 3.3:-2758009 | MS.gene67785:CDS |
| TGGACACACTCATGCTCTGT+TGG | 0.499630 | 3.3:+2758096 | None:intergenic |
| TTTAGCATAGGTCCGTGAAA+TGG | 0.500168 | 3.3:-2759296 | MS.gene67785:intron |
| AGGAGATCACTGAAGCTTCT+GGG | 0.504065 | 3.3:-2758068 | MS.gene67785:CDS |
| GGAAAAGCAGAAACTGCATC+TGG | 0.521529 | 3.3:-2759203 | MS.gene67785:intron |
| TGATGACCATGACAGCATCC+TGG | 0.539396 | 3.3:+2757983 | None:intergenic |
| GGGTCGGCCATCCGAACGAC+TGG | 0.546391 | 3.3:-2758148 | MS.gene67785:CDS |
| AGGTGTCCAGGATGCTGTCA+TGG | 0.560024 | 3.3:-2757989 | MS.gene67785:CDS |
| CTTCAGCTGTTAAAGAAAGC+GGG | 0.562359 | 3.3:-2758168 | MS.gene67785:CDS |
| CTTCAGTGATCTCCTTAACA+TGG | 0.563538 | 3.3:+2758076 | None:intergenic |
| GCTTATCAGCAGCTTTGCGG+TGG | 0.567237 | 3.3:-2759458 | MS.gene67785:CDS |
| CCTTCAGCTGTTAAAGAAAG+CGG | 0.588320 | 3.3:-2758169 | MS.gene67785:CDS |
| TGGGACTGAAGAAGCAGAAG+CGG | 0.588338 | 3.3:-2758049 | MS.gene67785:CDS |
| CGCTTTCTTTAACAGCTGAA+GGG | 0.591750 | 3.3:+2758170 | None:intergenic |
| TTCGATAAACGACGACACAA+TGG | 0.594243 | 3.3:-2760769 | MS.gene67785:CDS |
| CTGACTACATGACTTCTGGA+GGG | 0.596770 | 3.3:-2759487 | MS.gene67785:CDS |
| ATTGACAGCATTATCATACT+CGG | 0.598016 | 3.3:+2758023 | None:intergenic |
| TCTGACTACATGACTTCTGG+AGG | 0.598390 | 3.3:-2759488 | MS.gene67785:CDS |
| TGGCTTACCAGTCGTTCGGA+TGG | 0.598843 | 3.3:+2758141 | None:intergenic |
| TGACTACATGACTTCTGGAG+GGG | 0.607829 | 3.3:-2759486 | MS.gene67785:CDS |
| GATCAATGCGGCTATAGTCA+GGG | 0.641012 | 3.3:+2759257 | None:intergenic |
| GATAAACGACGACACAATGG+AGG | 0.651584 | 3.3:-2760766 | MS.gene67785:CDS |
| AGCTGTTAAAGAAAGCGGGT+CGG | 0.673250 | 3.3:-2758164 | MS.gene67785:CDS |
| GGATTTGTGCCAGATCAATG+CGG | 0.740512 | 3.3:+2759245 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAAATTATGAAC+TGG | - | chr3.3:2760148-2760167 | MS.gene67785:intron | 15.0% |
| !! | TTCTATTATGAAAATTCATA+CGG | - | chr3.3:2759124-2759143 | MS.gene67785:intron | 15.0% |
| !!! | TCGTTTTCTTTTAATATAAA+AGG | - | chr3.3:2759354-2759373 | MS.gene67785:intron | 15.0% |
| !!! | TTAAATTTCTAGATTTAAGT+TGG | - | chr3.3:2759018-2759037 | MS.gene67785:intron | 15.0% |
| !!! | TTGATTTAACTTAAAAAAGA+AGG | + | chr3.3:2760038-2760057 | None:intergenic | 15.0% |
| !! | TAAAAGAAAACGATAATGTT+AGG | + | chr3.3:2759347-2759366 | None:intergenic | 20.0% |
| !! | TATAGTTGATTAAATTGAAC+AGG | + | chr3.3:2759848-2759867 | None:intergenic | 20.0% |
| !! | TTGTAAATTTGCAATTATCA+TGG | + | chr3.3:2760613-2760632 | None:intergenic | 20.0% |
| !!! | TCTTTTTATATCTTCTATCT+GGG | - | chr3.3:2759661-2759680 | MS.gene67785:intron | 20.0% |
| !!! | TTATCTGTGCAAAAATTTTA+AGG | + | chr3.3:2760400-2760419 | None:intergenic | 20.0% |
| !!! | TTCTTTTTATATCTTCTATC+TGG | - | chr3.3:2759660-2759679 | MS.gene67785:intron | 20.0% |
| ! | AATACAAAACACTTGAATTG+AGG | + | chr3.3:2760508-2760527 | None:intergenic | 25.0% |
| ! | AATTAAATATACCGTAACAC+CGG | + | chr3.3:2758764-2758783 | None:intergenic | 25.0% |
| ! | ACAAACTTCATTTGTTTGTA+CGG | - | chr3.3:2759587-2759606 | MS.gene67785:intron | 25.0% |
| ! | ATAACCTATGTTTAGTATCA+CGG | + | chr3.3:2758518-2758537 | None:intergenic | 25.0% |
| ! | CAATGTCATTATGAAACATT+TGG | + | chr3.3:2759198-2759217 | None:intergenic | 25.0% |
| ! | CCTTAATCTTGATATAAACA+AGG | + | chr3.3:2760079-2760098 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTTCAATCTTA+GGG | - | chr3.3:2759079-2759098 | MS.gene67785:intron | 25.0% |
| ! | GTTTAATGATTGCTCAAAAA+AGG | - | chr3.3:2759308-2759327 | MS.gene67785:intron | 25.0% |
| ! | TGTAAGTTAACTTCAATCTT+AGG | - | chr3.3:2759078-2759097 | MS.gene67785:intron | 25.0% |
| !! | ATATTGACTGTGTAAAAGTA+CGG | + | chr3.3:2758362-2758381 | None:intergenic | 25.0% |
| !! | ATTTTGTTGAATCACTTGAA+CGG | - | chr3.3:2760317-2760336 | MS.gene67785:intron | 25.0% |
| !! | CCTTGTTTATATCAAGATTA+AGG | - | chr3.3:2760076-2760095 | MS.gene67785:intron | 25.0% |
| !! | TATCTTTTCTGATTTAGCAT+AGG | - | chr3.3:2759423-2759442 | MS.gene67785:intron | 25.0% |
| !! | TGATGTTTTATGTGCATTAT+TGG | - | chr3.3:2759727-2759746 | MS.gene67785:intron | 25.0% |
| !!! | AATTTCTAGATTTAAGTTGG+TGG | - | chr3.3:2759021-2759040 | MS.gene67785:intron | 25.0% |
| !!! | ATTCTGCTTACTTTTAATTG+TGG | - | chr3.3:2760444-2760463 | MS.gene67785:intron | 25.0% |
| !!! | CTTCAATTATTTTTTGCCAT+AGG | + | chr3.3:2758201-2758220 | None:intergenic | 25.0% |
| !!! | TAAGTTGGTGGTTTTTTAAA+AGG | - | chr3.3:2759033-2759052 | MS.gene67785:intron | 25.0% |
| !!! | TTTTTTTTCTTTCCGAAAAC+AGG | + | chr3.3:2760140-2760159 | None:intergenic | 25.0% |
| AAGAAATGTCCTTAAACTAG+GGG | + | chr3.3:2759558-2759577 | None:intergenic | 30.0% | |
| AAGAATAGCCGAAGATTTAA+TGG | + | chr3.3:2759776-2759795 | None:intergenic | 30.0% | |
| AAGCTTATTCCAAACTCAAA+AGG | - | chr3.3:2758057-2758076 | MS.gene67785:CDS | 30.0% | |
| AAGTAAGCAGAATAACTAAC+TGG | + | chr3.3:2760437-2760456 | None:intergenic | 30.0% | |
| ACTGTTGACAACATTGATAT+AGG | + | chr3.3:2758542-2758561 | None:intergenic | 30.0% | |
| ACTTAAACTATGTGTGTGTT+TGG | - | chr3.3:2758383-2758402 | MS.gene67785:intron | 30.0% | |
| AGAAGAAATGTCCTTAAACT+AGG | + | chr3.3:2759560-2759579 | None:intergenic | 30.0% | |
| ATTGACAGCATTATCATACT+CGG | + | chr3.3:2760711-2760730 | None:intergenic | 30.0% | |
| ATTTGACTAAACATTCCAAC+AGG | + | chr3.3:2759899-2759918 | None:intergenic | 30.0% | |
| CATTCATACAGAATGATCAT+AGG | + | chr3.3:2759623-2759642 | None:intergenic | 30.0% | |
| CTCTTTGACCATTAAATCTT+CGG | - | chr3.3:2759765-2759784 | MS.gene67785:intron | 30.0% | |
| GAAGAAATGTCCTTAAACTA+GGG | + | chr3.3:2759559-2759578 | None:intergenic | 30.0% | |
| TAATACAAAAACTTCAGTCC+TGG | - | chr3.3:2760205-2760224 | MS.gene67785:intron | 30.0% | |
| TAATGTGTTAAGTCTGATCA+AGG | + | chr3.3:2760251-2760270 | None:intergenic | 30.0% | |
| TATATCAATGTTGTCAACAG+TGG | - | chr3.3:2758541-2758560 | MS.gene67785:intron | 30.0% | |
| TCAAAATTCCAAAAACATGC+TGG | + | chr3.3:2758837-2758856 | None:intergenic | 30.0% | |
| TGACATTGAAATTTGACACT+TGG | - | chr3.3:2759210-2759229 | MS.gene67785:CDS | 30.0% | |
| TTGAACAAACATGGAATCAA+AGG | + | chr3.3:2759952-2759971 | None:intergenic | 30.0% | |
| TTGCACAGATAACATGAAAA+TGG | - | chr3.3:2760408-2760427 | MS.gene67785:intron | 30.0% | |
| ! | ATCTTTTGATCTGTAACCTA+TGG | - | chr3.3:2758182-2758201 | MS.gene67785:intron | 30.0% |
| ! | ATGGAAGAAGATTTGGAATT+TGG | - | chr3.3:2757930-2757949 | MS.gene67785:CDS | 30.0% |
| ! | TGAATTTTTGTGCAATTTCG+CGG | + | chr3.3:2758104-2758123 | None:intergenic | 30.0% |
| ! | TGGAAGAAGATTTGGAATTT+GGG | - | chr3.3:2757931-2757950 | MS.gene67785:CDS | 30.0% |
| !! | AAGCTAAAAAGTGTAGCTTT+TGG | - | chr3.3:2758455-2758474 | MS.gene67785:intron | 30.0% |
| !! | ACTGTTTTTCTTAGTGTGAT+CGG | + | chr3.3:2760293-2760312 | None:intergenic | 30.0% |
| AATCAAAGGAACATCCTTGA+GGG | + | chr3.3:2759938-2759957 | None:intergenic | 35.0% | |
| ACATAGTAACTTGATCCTGT+TGG | - | chr3.3:2759881-2759900 | MS.gene67785:intron | 35.0% | |
| CATGTTTGTTCAACCTGTTA+AGG | - | chr3.3:2759959-2759978 | MS.gene67785:intron | 35.0% | |
| GCATTATTGGTATATCGAGT+GGG | - | chr3.3:2759740-2759759 | MS.gene67785:intron | 35.0% | |
| GCTACATTTAGATATTCACC+AGG | + | chr3.3:2760016-2760035 | None:intergenic | 35.0% | |
| GTTAAAACATTAGCTCAACC+TGG | - | chr3.3:2759995-2760014 | MS.gene67785:intron | 35.0% | |
| TAGCTTCTGTAAAATCACCA+TGG | + | chr3.3:2758441-2758460 | None:intergenic | 35.0% | |
| TAGTACCACATCTCAGAATT+AGG | + | chr3.3:2758860-2758879 | None:intergenic | 35.0% | |
| TATGTGTGTGTTTGGTATCA+CGG | - | chr3.3:2758391-2758410 | MS.gene67785:intron | 35.0% | |
| TGCATTATTGGTATATCGAG+TGG | - | chr3.3:2759739-2759758 | MS.gene67785:intron | 35.0% | |
| ! | AAGCAAAACAACGATTTTGG+TGG | + | chr3.3:2758003-2758022 | None:intergenic | 35.0% |
| ! | AAGTTTTCAGATTTTGCACC+AGG | + | chr3.3:2760226-2760245 | None:intergenic | 35.0% |
| ! | ACGAAGCAAAACAACGATTT+TGG | + | chr3.3:2758006-2758025 | None:intergenic | 35.0% |
| ! | AGATTTGGAATTTGGGAAGA+AGG | - | chr3.3:2757938-2757957 | MS.gene67785:CDS | 35.0% |
| ! | CTTAACAGGTTGAACAAACA+TGG | + | chr3.3:2759961-2759980 | None:intergenic | 35.0% |
| ! | TACCTCAAATCACCTGTTTT+CGG | - | chr3.3:2760125-2760144 | MS.gene67785:intron | 35.0% |
| ! | TTTTCTGACTACATGACTTC+TGG | - | chr3.3:2759240-2759259 | MS.gene67785:CDS | 35.0% |
| !! | AGCTTTTGGAAAATCACGAT+AGG | - | chr3.3:2758469-2758488 | MS.gene67785:intron | 35.0% |
| !! | TTTGACCTAATTCTGAGATG+TGG | - | chr3.3:2758852-2758871 | MS.gene67785:intron | 35.0% |
| !!! | AGTAACGAACCTTTTGAGTT+TGG | + | chr3.3:2758069-2758088 | None:intergenic | 35.0% |
| AAACTACCCTAATCCAACCA+AGG | + | chr3.3:2760181-2760200 | None:intergenic | 40.0% | |
| AACTACCCTAATCCAACCAA+GGG | + | chr3.3:2760180-2760199 | None:intergenic | 40.0% | |
| AATTCATACGGCGTAGCAAT+AGG | - | chr3.3:2759136-2759155 | MS.gene67785:intron | 40.0% | |
| ATAACACCCTTGGTTGGATT+AGG | - | chr3.3:2760171-2760190 | MS.gene67785:intron | 40.0% | |
| ATAACAGTCATCTTGCTCTC+TGG | + | chr3.3:2758248-2758267 | None:intergenic | 40.0% | |
| ATTCATACGGCGTAGCAATA+GGG | - | chr3.3:2759137-2759156 | MS.gene67785:intron | 40.0% | |
| ATTGAAGTTTCGTACCCTCA+AGG | - | chr3.3:2759921-2759940 | MS.gene67785:intron | 40.0% | |
| CAAACAAAGAGAGCCTTAAC+AGG | + | chr3.3:2759975-2759994 | None:intergenic | 40.0% | |
| CCTTCAGCTGTTAAAGAAAG+CGG | - | chr3.3:2760562-2760581 | MS.gene67785:intron | 40.0% | |
| CGCTTTCTTTAACAGCTGAA+GGG | + | chr3.3:2760564-2760583 | None:intergenic | 40.0% | |
| CTGTTAAGGCTCTCTTTGTT+TGG | - | chr3.3:2759973-2759992 | MS.gene67785:intron | 40.0% | |
| CTTCAGCTGTTAAAGAAAGC+GGG | - | chr3.3:2760563-2760582 | MS.gene67785:intron | 40.0% | |
| CTTCAGTGATCTCCTTAACA+TGG | + | chr3.3:2760658-2760677 | None:intergenic | 40.0% | |
| GAAACAGTGACTCCATTTCA+CGG | + | chr3.3:2759450-2759469 | None:intergenic | 40.0% | |
| GAATCAAAGGAACATCCTTG+AGG | + | chr3.3:2759939-2759958 | None:intergenic | 40.0% | |
| GAGGTAGCATGTCATATAGA+AGG | + | chr3.3:2760111-2760130 | None:intergenic | 40.0% | |
| GCTGTCAATGAAGCTATTAG+AGG | - | chr3.3:2760722-2760741 | MS.gene67785:CDS | 40.0% | |
| TAACACCCTTGGTTGGATTA+GGG | - | chr3.3:2760172-2760191 | MS.gene67785:intron | 40.0% | |
| TAACAGAGTAAATCTGCCCT+TGG | + | chr3.3:2758935-2758954 | None:intergenic | 40.0% | |
| TAACAGTCATCTTGCTCTCT+GGG | + | chr3.3:2758247-2758266 | None:intergenic | 40.0% | |
| TATGAACTGGATAACACCCT+TGG | - | chr3.3:2760161-2760180 | MS.gene67785:intron | 40.0% | |
| TGAAATTTGACACTTGGCAG+TGG | - | chr3.3:2759216-2759235 | MS.gene67785:CDS | 40.0% | |
| TTCCGAAAACAGGTGATTTG+AGG | + | chr3.3:2760130-2760149 | None:intergenic | 40.0% | |
| TTCGATAAACGACGACACAA+TGG | - | chr3.3:2757962-2757981 | MS.gene67785:CDS | 40.0% | |
| TTTAGCATAGGTCCGTGAAA+TGG | - | chr3.3:2759435-2759454 | MS.gene67785:CDS | 40.0% | |
| ! | AATATACCGTAACACCGGTT+AGG | + | chr3.3:2758759-2758778 | None:intergenic | 40.0% |
| ! | ACTGTGTAAAAGTACGGTGT+AGG | + | chr3.3:2758356-2758375 | None:intergenic | 40.0% |
| ! | GAATCTTGCCAGCATGTTTT+TGG | - | chr3.3:2758826-2758845 | MS.gene67785:intron | 40.0% |
| !! | ATTCTGAGATGTGGTACTAC+AGG | - | chr3.3:2758861-2758880 | MS.gene67785:intron | 40.0% |
| AAAGTACGGTGTAGGTAGCT+CGG | + | chr3.3:2758348-2758367 | None:intergenic | 45.0% | |
| AACTGGATAACACCCTTGGT+TGG | - | chr3.3:2760165-2760184 | MS.gene67785:intron | 45.0% | |
| AAGGAGATCACTGAAGCTTC+TGG | - | chr3.3:2760662-2760681 | MS.gene67785:intron | 45.0% | |
| ACATTAAACGAGGAGGTCTC+GGG | + | chr3.3:2758310-2758329 | None:intergenic | 45.0% | |
| ACCATGGATCGTCATGATTC+TGG | + | chr3.3:2758425-2758444 | None:intergenic | 45.0% | |
| AGATCAATGCGGCTATAGTC+AGG | + | chr3.3:2759478-2759497 | None:intergenic | 45.0% | |
| AGCTGTTAAAGAAAGCGGGT+CGG | - | chr3.3:2760567-2760586 | MS.gene67785:intron | 45.0% | |
| AGGAGATCACTGAAGCTTCT+GGG | - | chr3.3:2760663-2760682 | MS.gene67785:intron | 45.0% | |
| ATCATGGCTTACCAGTCGTT+CGG | + | chr3.3:2760597-2760616 | None:intergenic | 45.0% | |
| CCGCTTTCTTTAACAGCTGA+AGG | + | chr3.3:2760565-2760584 | None:intergenic | 45.0% | |
| CCTGTTCTTGAACAGCTCTA+AGG | + | chr3.3:2759510-2759529 | None:intergenic | 45.0% | |
| CCTTAGAGCTGTTCAAGAAC+AGG | - | chr3.3:2759507-2759526 | MS.gene67785:intron | 45.0% | |
| CTAAGCGACATTAAACGAGG+AGG | + | chr3.3:2758317-2758336 | None:intergenic | 45.0% | |
| CTCGCCGTGATACTAAACAT+AGG | - | chr3.3:2758511-2758530 | MS.gene67785:intron | 45.0% | |
| CTGACTACATGACTTCTGGA+GGG | - | chr3.3:2759244-2759263 | MS.gene67785:CDS | 45.0% | |
| CTGGCAAGATTCACACGTTT+GGG | + | chr3.3:2758818-2758837 | None:intergenic | 45.0% | |
| GACATTAAACGAGGAGGTCT+CGG | + | chr3.3:2758311-2758330 | None:intergenic | 45.0% | |
| GAGCTAAGCGACATTAAACG+AGG | + | chr3.3:2758320-2758339 | None:intergenic | 45.0% | |
| GATAAACGACGACACAATGG+AGG | - | chr3.3:2757965-2757984 | MS.gene67785:CDS | 45.0% | |
| GATCAATGCGGCTATAGTCA+GGG | + | chr3.3:2759477-2759496 | None:intergenic | 45.0% | |
| GCATGAGTGTGTCCATGTTA+AGG | - | chr3.3:2760643-2760662 | MS.gene67785:intron | 45.0% | |
| GGAAAAGCAGAAACTGCATC+TGG | - | chr3.3:2759528-2759547 | MS.gene67785:intron | 45.0% | |
| GGATTTGTGCCAGATCAATG+CGG | + | chr3.3:2759489-2759508 | None:intergenic | 45.0% | |
| GGCAGAACCATCTAGTATAG+CGG | + | chr3.3:2758893-2758912 | None:intergenic | 45.0% | |
| TCTGACTACATGACTTCTGG+AGG | - | chr3.3:2759243-2759262 | MS.gene67785:CDS | 45.0% | |
| TCTGGTAAGCCCCTAGTTTA+AGG | - | chr3.3:2759546-2759565 | MS.gene67785:intron | 45.0% | |
| TTGGCTTATCAGCAGCTTTG+CGG | - | chr3.3:2759270-2759289 | MS.gene67785:CDS | 45.0% | |
| ! | CACGTTTGGGCTTTTCAGTT+CGG | + | chr3.3:2758805-2758824 | None:intergenic | 45.0% |
| ! | TGACTACATGACTTCTGGAG+GGG | - | chr3.3:2759245-2759264 | MS.gene67785:CDS | 45.0% |
| ! | TGACTATAGCCGCATTGATC+TGG | - | chr3.3:2759477-2759496 | MS.gene67785:CDS | 45.0% |
| ! | TTTGTACTGAAAGCGTGTCG+CGG | - | chr3.3:2758590-2758609 | MS.gene67785:intron | 45.0% |
| !! | TGAAGCTATTAGAGGTGTCC+AGG | - | chr3.3:2760730-2760749 | MS.gene67785:CDS | 45.0% |
| !!! | GCTTTTCAGTTCGGTGTTTC+AGG | + | chr3.3:2758796-2758815 | None:intergenic | 45.0% |
| CAAGTGACGTTGCTTGCAGT+TGG | - | chr3.3:2760370-2760389 | MS.gene67785:intron | 50.0% | |
| GCATCAGCCGCTATACTAGA+TGG | - | chr3.3:2758883-2758902 | MS.gene67785:intron | 50.0% | |
| GCCAGAATCATGACGATCCA+TGG | - | chr3.3:2758421-2758440 | MS.gene67785:intron | 50.0% | |
| GCTGGCAAGATTCACACGTT+TGG | + | chr3.3:2758819-2758838 | None:intergenic | 50.0% | |
| GGAGGTCTCGGGTTTATCTT+CGG | + | chr3.3:2758299-2758318 | None:intergenic | 50.0% | |
| GGTGTCTACATGGCACACAA+TGG | + | chr3.3:2758914-2758933 | None:intergenic | 50.0% | |
| GTGTGCCATGTAGACACCAA+GGG | - | chr3.3:2758916-2758935 | MS.gene67785:intron | 50.0% | |
| TGATGACCATGACAGCATCC+TGG | + | chr3.3:2760751-2760770 | None:intergenic | 50.0% | |
| TGGACACACTCATGCTCTGT+TGG | + | chr3.3:2760638-2760657 | None:intergenic | 50.0% | |
| TGGGACTGAAGAAGCAGAAG+CGG | - | chr3.3:2760682-2760701 | MS.gene67785:CDS | 50.0% | |
| TGTGTGCCATGTAGACACCA+AGG | - | chr3.3:2758915-2758934 | MS.gene67785:intron | 50.0% | |
| ! | CATGACTTCTGGAGGGGAAT+TGG | - | chr3.3:2759251-2759270 | MS.gene67785:CDS | 50.0% |
| ! | GAGAAGCCTAACCGGTGTTA+CGG | - | chr3.3:2758750-2758769 | MS.gene67785:intron | 50.0% |
| !! | ATCTGCCCTTGGTGTCTACA+TGG | + | chr3.3:2758924-2758943 | None:intergenic | 50.0% |
| AGGTGTCCAGGATGCTGTCA+TGG | - | chr3.3:2760742-2760761 | MS.gene67785:CDS | 55.0% | |
| CGGCGTAGCAATAGGGCTAT+TGG | - | chr3.3:2759144-2759163 | MS.gene67785:intron | 55.0% | |
| GACAGCGAGAGAAGCCTAAC+CGG | - | chr3.3:2758742-2758761 | MS.gene67785:intron | 55.0% | |
| GCTTATCAGCAGCTTTGCGG+TGG | - | chr3.3:2759273-2759292 | MS.gene67785:CDS | 55.0% | |
| TACGGTGTAGGTAGCTCGGT+TGG | + | chr3.3:2758344-2758363 | None:intergenic | 55.0% | |
| TGGCTTACCAGTCGTTCGGA+TGG | + | chr3.3:2760593-2760612 | None:intergenic | 55.0% | |
| GGGTCGGCCATCCGAACGAC+TGG | - | chr3.3:2760583-2760602 | MS.gene67785:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 2757930 | 2760823 | 2757930 | ID=MS.gene67785 |
| chr3.3 | mRNA | 2757930 | 2760823 | 2757930 | ID=MS.gene67785.t1;Parent=MS.gene67785 |
| chr3.3 | exon | 2760675 | 2760823 | 2760675 | ID=MS.gene67785.t1.exon1;Parent=MS.gene67785.t1 |
| chr3.3 | CDS | 2760675 | 2760823 | 2760675 | ID=cds.MS.gene67785.t1;Parent=MS.gene67785.t1 |
| chr3.3 | exon | 2759424 | 2759517 | 2759424 | ID=MS.gene67785.t1.exon2;Parent=MS.gene67785.t1 |
| chr3.3 | CDS | 2759424 | 2759517 | 2759424 | ID=cds.MS.gene67785.t1;Parent=MS.gene67785.t1 |
| chr3.3 | exon | 2759204 | 2759308 | 2759204 | ID=MS.gene67785.t1.exon3;Parent=MS.gene67785.t1 |
| chr3.3 | CDS | 2759204 | 2759308 | 2759204 | ID=cds.MS.gene67785.t1;Parent=MS.gene67785.t1 |
| chr3.3 | exon | 2757930 | 2758199 | 2757930 | ID=MS.gene67785.t1.exon4;Parent=MS.gene67785.t1 |
| chr3.3 | CDS | 2757930 | 2758199 | 2757930 | ID=cds.MS.gene67785.t1;Parent=MS.gene67785.t1 |
| Gene Sequence |
| Protein sequence |
