Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68151.t1 | XP_003604031.1 | 91 | 312 | 14 | 1 | 1 | 312 | 1 | 298 | 2.40E-153 | 551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68151.t1 | G7J8H3 | 91.0 | 312 | 14 | 1 | 1 | 312 | 1 | 298 | 1.7e-153 | 551.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene68151 | 0.836972 | 6.84E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene68151 | 0.83289 | 7.30E-56 | -1.69E-46 |
| MS.gene050128 | MS.gene68151 | 0.885247 | 9.58E-72 | -1.69E-46 |
| MS.gene050301 | MS.gene68151 | 0.811214 | 7.83E-51 | -1.69E-46 |
| MS.gene050685 | MS.gene68151 | 0.822737 | 2.02E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene68151 | 0.815322 | 9.81E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene68151 | 0.804067 | 2.58E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene68151 | 0.874943 | 4.55E-68 | -1.69E-46 |
| MS.gene053073 | MS.gene68151 | 0.806578 | 7.68E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene68151 | 0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene68151 | 0.809927 | 1.49E-50 | -1.69E-46 |
| MS.gene053204 | MS.gene68151 | 0.824878 | 6.36E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene68151 | 0.806828 | 6.80E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene68151 | 0.811176 | 7.98E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene68151 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene054012 | MS.gene68151 | 0.801535 | 8.60E-49 | -1.69E-46 |
| MS.gene054013 | MS.gene68151 | 0.802761 | 4.81E-49 | -1.69E-46 |
| MS.gene054214 | MS.gene68151 | 0.829614 | 4.66E-55 | -1.69E-46 |
| MS.gene055207 | MS.gene68151 | 0.837583 | 4.77E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene68151 | 0.809335 | 1.99E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene68151 | 0.820268 | 7.50E-53 | -1.69E-46 |
| MS.gene055604 | MS.gene68151 | 0.818321 | 2.08E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene68151 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene68151 | 0.803413 | 3.53E-49 | -1.69E-46 |
| MS.gene059228 | MS.gene68151 | 0.876207 | 1.68E-68 | -1.69E-46 |
| MS.gene059294 | MS.gene68151 | 0.807625 | 4.61E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene68151 | 0.810424 | 1.16E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene68151 | 0.831717 | 1.42E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene68151 | 0.842316 | 2.79E-58 | -1.69E-46 |
| MS.gene060005 | MS.gene68151 | 0.874316 | 7.43E-68 | -1.69E-46 |
| MS.gene06037 | MS.gene68151 | 0.834932 | 2.25E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene68151 | 0.802127 | 6.50E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene68151 | 0.816102 | 6.57E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene68151 | 0.825152 | 5.48E-54 | -1.69E-46 |
| MS.gene061112 | MS.gene68151 | 0.872847 | 2.32E-67 | -1.69E-46 |
| MS.gene061113 | MS.gene68151 | 0.820218 | 7.71E-53 | -1.69E-46 |
| MS.gene061265 | MS.gene68151 | 0.87138 | 7.14E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68151.t1 | MTR_3g117760 | 91.667 | 312 | 12 | 2 | 1 | 312 | 1 | 298 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68151.t1 | AT2G16630 | 46.348 | 356 | 136 | 6 | 7 | 312 | 9 | 359 | 1.42e-100 | 300 |
Find 89 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGATCTCCTCTCCCTTTC+AGG | 0.175349 | 3.1:-92671072 | None:intergenic |
| GGTGCCAATGTTGGTGGTGG+TGG | 0.190043 | 3.1:-92670116 | None:intergenic |
| ATGGTGGAAGTTGTGGCATT+GGG | 0.241279 | 3.1:-92670175 | None:intergenic |
| GATGGACATGCTGAAGCTTC+TGG | 0.264920 | 3.1:-92670215 | None:intergenic |
| AATGTTGGTGGTGGTGGGGA+TGG | 0.300659 | 3.1:-92670110 | None:intergenic |
| ACAAAAGTAGCTGTAGCTTT+TGG | 0.304044 | 3.1:+92671001 | MS.gene68151:CDS |
| CATTTCATGAGGGCTAATTC+TGG | 0.314423 | 3.1:+92671238 | MS.gene68151:CDS |
| AAGGGAGAGGAGATCCTTAC+AGG | 0.326585 | 3.1:+92671077 | MS.gene68151:CDS |
| ACACATGAATTATGCTTTGA+TGG | 0.330439 | 3.1:+92671183 | MS.gene68151:CDS |
| CAAGAGAAGAAACAACAAAT+TGG | 0.341479 | 3.1:+92669856 | MS.gene68151:CDS |
| GTGCCAATGTTGGTGGTGGT+GGG | 0.345243 | 3.1:-92670115 | None:intergenic |
| CTCCAATAGCATTCATATTC+CGG | 0.351920 | 3.1:-92670962 | None:intergenic |
| AAAATCCAAGACTCATGTTT+AGG | 0.352973 | 3.1:+92670003 | MS.gene68151:CDS |
| TCTAACATTCATGGAGTTGC+CGG | 0.354500 | 3.1:+92668394 | None:intergenic |
| ATTCTTTCAGTGGCCATTGA+TGG | 0.372198 | 3.1:+92668443 | MS.gene68151:CDS |
| ATGTTGGTGGTGGTGGGGAT+GGG | 0.374966 | 3.1:-92670109 | None:intergenic |
| GAAGAAACAACAAATTGGTT+TGG | 0.375618 | 3.1:+92669861 | MS.gene68151:CDS |
| CAAGTGGATGGTAAGAGAAT+TGG | 0.385574 | 3.1:-92671150 | None:intergenic |
| CAGTGATCCCTTCTCTCAAA+AGG | 0.387268 | 3.1:-92671102 | None:intergenic |
| AATGGTGGAAGTTGTGGCAT+TGG | 0.390842 | 3.1:-92670176 | None:intergenic |
| AGTTAGATCTCACCATTAAC+AGG | 0.396284 | 3.1:-92668545 | None:intergenic |
| TGCCGGAATATGAATGCTAT+TGG | 0.408426 | 3.1:+92670960 | MS.gene68151:CDS |
| ATCTGCCTTTGTTCCATCAA+TGG | 0.412809 | 3.1:-92668456 | None:intergenic |
| CATGTCTCGGGAAATAATAA+TGG | 0.419703 | 3.1:+92669936 | MS.gene68151:CDS |
| ATGGTTGCAGCAAGGAAATA+TGG | 0.433099 | 3.1:+92671025 | MS.gene68151:CDS |
| AGCTATACAATGAGGTTTGA+TGG | 0.433754 | 3.1:+92669885 | MS.gene68151:CDS |
| TGGTGGTGGTGGGGATGGGT+TGG | 0.440191 | 3.1:-92670105 | None:intergenic |
| ATGTGGAGGAGGAGAAGAAA+TGG | 0.446281 | 3.1:-92670141 | None:intergenic |
| TGCCAATGTTGGTGGTGGTG+GGG | 0.465868 | 3.1:-92670114 | None:intergenic |
| TGGTTGTTCTGCACATGTCT+CGG | 0.469204 | 3.1:+92669923 | MS.gene68151:CDS |
| TTTGATGGAGCACCAGACTT+AGG | 0.482264 | 3.1:+92669900 | MS.gene68151:CDS |
| ATGAGGGCTAATTCTGGTGC+TGG | 0.483178 | 3.1:+92671244 | MS.gene68151:CDS |
| TGCTTTGATGGGCTCAACTA+GGG | 0.485464 | 3.1:+92671195 | MS.gene68151:CDS |
| CAGTATTGCATAGGTTGAGC+AGG | 0.486574 | 3.1:-92670071 | None:intergenic |
| AACATCCTAAACATGAGTCT+TGG | 0.489630 | 3.1:-92670008 | None:intergenic |
| GGTTGTTCTGCACATGTCTC+GGG | 0.491091 | 3.1:+92669924 | MS.gene68151:CDS |
| TGGTGGAAGTTGTGGCATTG+GGG | 0.492351 | 3.1:-92670174 | None:intergenic |
| CACATGAATTATGCTTTGAT+GGG | 0.492608 | 3.1:+92671184 | MS.gene68151:CDS |
| GGTGGTGCCAATGTTGGTGG+TGG | 0.493754 | 3.1:-92670119 | None:intergenic |
| TGTGGAGGAGGAGAAGAAAT+GGG | 0.494289 | 3.1:-92670140 | None:intergenic |
| ATGCTTTGATGGGCTCAACT+AGG | 0.495913 | 3.1:+92671194 | MS.gene68151:CDS |
| GTTGCAAACAAAAGCTTCTC+CGG | 0.497432 | 3.1:-92668413 | None:intergenic |
| ATCCCCACCACCACCAACAT+TGG | 0.499035 | 3.1:+92670112 | MS.gene68151:CDS |
| GCACCTTCACCACAACTCAT+TGG | 0.503873 | 3.1:-92669969 | None:intergenic |
| TGTCATGTAGTGACAACAAT+GGG | 0.513625 | 3.1:+92669820 | MS.gene68151:CDS |
| TCTCTCAAAAGGGTCCTGTA+AGG | 0.528501 | 3.1:-92671091 | None:intergenic |
| CATGTTTAGGATGTTTGACA+TGG | 0.532543 | 3.1:+92670016 | MS.gene68151:CDS |
| GCAGAACAACCACCTAAGTC+TGG | 0.541167 | 3.1:-92669912 | None:intergenic |
| CAATTCTCTTACCATCCACT+TGG | 0.543024 | 3.1:+92671151 | MS.gene68151:CDS |
| CGGAATATGAATGCTATTGG+AGG | 0.544236 | 3.1:+92670963 | MS.gene68151:CDS |
| CAGTGATAAACTTACTGTGA+TGG | 0.555843 | 3.1:-92670233 | None:intergenic |
| TTACTGCTTATCATTTCATG+AGG | 0.557628 | 3.1:+92671227 | MS.gene68151:CDS |
| AGTGATCCCTTCTCTCAAAA+GGG | 0.557864 | 3.1:-92671101 | None:intergenic |
| TAGGTTGAGCAGGCTGAGCA+AGG | 0.559848 | 3.1:-92670061 | None:intergenic |
| ATGAGTTGTGGTGAAGGTGC+TGG | 0.561315 | 3.1:+92669972 | MS.gene68151:CDS |
| TGATAGGAAGTGGACAATGC+CGG | 0.564202 | 3.1:+92670943 | MS.gene68151:intron |
| ATGGGTGGTGCCAATGTTGG+TGG | 0.567999 | 3.1:-92670122 | None:intergenic |
| GATGTTGAGCAGTATTGCAT+AGG | 0.569435 | 3.1:-92670080 | None:intergenic |
| AAAATCATTGGTGGTAATGG+TGG | 0.570401 | 3.1:-92670191 | None:intergenic |
| GGTGGAAGTTGTGGCATTGG+GGG | 0.571199 | 3.1:-92670173 | None:intergenic |
| TTTGTGATCAATGCAAAGAC+GGG | 0.581900 | 3.1:+92668501 | MS.gene68151:CDS |
| GGTAGGTTGAAATGTGGAGG+AGG | 0.582342 | 3.1:-92670152 | None:intergenic |
| GGTGGTAATGGTGGAAGTTG+TGG | 0.582776 | 3.1:-92670182 | None:intergenic |
| ACATTGTGGTATGGCCTGAA+AGG | 0.589527 | 3.1:+92671058 | MS.gene68151:CDS |
| TGGTATGGCCTGAAAGGGAG+AGG | 0.589868 | 3.1:+92671064 | MS.gene68151:CDS |
| TACTGCTTATCATTTCATGA+GGG | 0.598834 | 3.1:+92671228 | MS.gene68151:CDS |
| ATTTGTGATCAATGCAAAGA+CGG | 0.604556 | 3.1:+92668500 | MS.gene68151:CDS |
| TGAGCAGGCTGAGCAAGGAG+TGG | 0.605851 | 3.1:-92670056 | None:intergenic |
| GAAATGGGTGGTGCCAATGT+TGG | 0.606306 | 3.1:-92670125 | None:intergenic |
| GATGGAGCACCAGACTTAGG+TGG | 0.611734 | 3.1:+92669903 | MS.gene68151:CDS |
| CATTGTGGTATGGCCTGAAA+GGG | 0.612379 | 3.1:+92671059 | MS.gene68151:CDS |
| GGACCAATGAGTTGTGGTGA+AGG | 0.613433 | 3.1:+92669966 | MS.gene68151:CDS |
| AGTGGCCATTGATGGAACAA+AGG | 0.622178 | 3.1:+92668451 | MS.gene68151:CDS |
| GGTTTGGAAGCTATACAATG+AGG | 0.622859 | 3.1:+92669877 | MS.gene68151:CDS |
| GAATATGAATGCTATTGGAG+GGG | 0.629266 | 3.1:+92670965 | MS.gene68151:CDS |
| GGAAATAATAATGGACAAGG+AGG | 0.636968 | 3.1:+92669945 | MS.gene68151:CDS |
| CTGTCATGTAGTGACAACAA+TGG | 0.641151 | 3.1:+92669819 | MS.gene68151:CDS |
| TCGGGAAATAATAATGGACA+AGG | 0.644592 | 3.1:+92669942 | MS.gene68151:CDS |
| AAGGCAGATACTATGCTCAC+CGG | 0.644788 | 3.1:+92668470 | MS.gene68151:CDS |
| TTGATCACAAATGACAGTGC+CGG | 0.647531 | 3.1:-92668489 | None:intergenic |
| ACAGACATGACATTGTGGTA+TGG | 0.658654 | 3.1:+92671049 | MS.gene68151:CDS |
| GGAATATGAATGCTATTGGA+GGG | 0.672296 | 3.1:+92670964 | MS.gene68151:CDS |
| CAAGGAGGACCAATGAGTTG+TGG | 0.682632 | 3.1:+92669960 | MS.gene68151:CDS |
| ATGTGTGTGACTACACCAAG+TGG | 0.706120 | 3.1:-92671166 | None:intergenic |
| GGAGGAGGAGAAGAAATGGG+TGG | 0.708291 | 3.1:-92670137 | None:intergenic |
| GTGTGACTACACCAAGTGGA+TGG | 0.711817 | 3.1:-92671162 | None:intergenic |
| TGACATGGAGATGTATGCTG+TGG | 0.712430 | 3.1:+92670031 | MS.gene68151:CDS |
| TGAAATGATAAGCAGTAACG+AGG | 0.716584 | 3.1:-92671222 | None:intergenic |
| ATGGTACAGACATGACATTG+TGG | 0.735250 | 3.1:+92671044 | MS.gene68151:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTTAAACTTATTATTATT+AGG | - | chr3.1:92670608-92670627 | None:intergenic | 10.0% |
| !! | TTCAATAAATACAATTAATT+TGG | + | chr3.1:92669716-92669735 | MS.gene68151:intron | 10.0% |
| !! | TTGTAAATTATTATTATAAC+CGG | + | chr3.1:92670849-92670868 | MS.gene68151:intron | 10.0% |
| !!! | TATTTTCAACTAATTTTTTT+TGG | - | chr3.1:92670665-92670684 | None:intergenic | 10.0% |
| !! | AATAATAAGTTTAAAGACTT+TGG | + | chr3.1:92670611-92670630 | MS.gene68151:intron | 15.0% |
| !! | TGAAATCTTATTATCATTAA+TGG | - | chr3.1:92670275-92670294 | None:intergenic | 15.0% |
| !! | TGTAAAATTACTAAAAGAAA+TGG | + | chr3.1:92670402-92670421 | MS.gene68151:intron | 15.0% |
| !! | TTTCAAATAAAAACTCATAA+TGG | - | chr3.1:92669103-92669122 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTTTTTTCTTTT+TGG | - | chr3.1:92668857-92668876 | None:intergenic | 15.0% |
| !!! | GGTTTTTTTTTTTTCTTTTA+CGG | - | chr3.1:92669512-92669531 | None:intergenic | 15.0% |
| !!! | TACTCAAAAAATGTATTTTT+AGG | - | chr3.1:92670583-92670602 | None:intergenic | 15.0% |
| !!! | TATGAGTTTTTATTTGAAAT+AGG | + | chr3.1:92669104-92669123 | MS.gene68151:intron | 15.0% |
| !! | AAATAAGCAAAATAAGCATT+GGG | + | chr3.1:92669310-92669329 | MS.gene68151:intron | 20.0% |
| !! | ATGAAAGATGAATAAATATC+CGG | - | chr3.1:92670871-92670890 | None:intergenic | 20.0% |
| !! | TCAGTTCTATATTAGTAATT+AGG | + | chr3.1:92669411-92669430 | MS.gene68151:intron | 20.0% |
| !! | TTAAATGCACAAAATTTAAG+AGG | + | chr3.1:92669225-92669244 | MS.gene68151:intron | 20.0% |
| !!! | AAATGGTTATTATGTGTTTT+TGG | - | chr3.1:92668658-92668677 | None:intergenic | 20.0% |
| !!! | AAATTGTACTATTTGTTAAG+TGG | - | chr3.1:92669379-92669398 | None:intergenic | 20.0% |
| !!! | AACATTTTTAATTCTTTCAG+TGG | + | chr3.1:92668433-92668452 | MS.gene68151:CDS | 20.0% |
| !!! | AATGTTAACCTGTATTTTTA+AGG | + | chr3.1:92669129-92669148 | MS.gene68151:intron | 20.0% |
| !!! | ACAATTTAGTTTTTTCAATG+CGG | + | chr3.1:92668999-92669018 | MS.gene68151:intron | 20.0% |
| !!! | ATATGTTTTTAATTGTGACA+TGG | + | chr3.1:92669342-92669361 | MS.gene68151:intron | 20.0% |
| !!! | GGTAAAAATTTGAGTTTAAA+AGG | + | chr3.1:92670632-92670651 | MS.gene68151:intron | 20.0% |
| !!! | GTTTTGAAAATAGTAGAATA+TGG | + | chr3.1:92670503-92670522 | MS.gene68151:intron | 20.0% |
| !!! | TAATGGTTCAATTTAGTTTA+TGG | + | chr3.1:92669034-92669053 | MS.gene68151:intron | 20.0% |
| !!! | TGTAAAGTATTTGATTTGAT+AGG | + | chr3.1:92670927-92670946 | MS.gene68151:intron | 20.0% |
| ! | AAATGTATGGTACTAATAGA+TGG | - | chr3.1:92668623-92668642 | None:intergenic | 25.0% |
| ! | GAAATAAGCAAAATAAGCAT+TGG | + | chr3.1:92669309-92669328 | MS.gene68151:intron | 25.0% |
| ! | GAACGTTTAACTAAAATGTA+TGG | - | chr3.1:92668636-92668655 | None:intergenic | 25.0% |
| ! | GTCAATAAAATCTATGACAT+AGG | - | chr3.1:92669771-92669790 | None:intergenic | 25.0% |
| ! | TGAGTTTATGAACTATCTTA+CGG | - | chr3.1:92668940-92668959 | None:intergenic | 25.0% |
| ! | TTATTGACCAAATTTAATGC+AGG | + | chr3.1:92669783-92669802 | MS.gene68151:intron | 25.0% |
| !! | AAATTTGAGTTTAAAAGGCT+AGG | + | chr3.1:92670637-92670656 | MS.gene68151:intron | 25.0% |
| !! | ATACTATTTTCACTAAGAGT+CGG | + | chr3.1:92670309-92670328 | MS.gene68151:intron | 25.0% |
| !! | GGTTTCTTAATTTGATAAGT+GGG | + | chr3.1:92669055-92669074 | MS.gene68151:intron | 25.0% |
| !! | TGGTTTCTTAATTTGATAAG+TGG | + | chr3.1:92669054-92669073 | MS.gene68151:intron | 25.0% |
| !!! | AAGAGGATGTTTCTATTTTT+GGG | + | chr3.1:92669242-92669261 | MS.gene68151:intron | 25.0% |
| !!! | ACTAATATAGAACTGACTTT+TGG | - | chr3.1:92669407-92669426 | None:intergenic | 25.0% |
| !!! | TAAGAGGATGTTTCTATTTT+TGG | + | chr3.1:92669241-92669260 | MS.gene68151:intron | 25.0% |
| AAAATCCAAGACTCATGTTT+AGG | + | chr3.1:92670003-92670022 | MS.gene68151:CDS | 30.0% | |
| AACTTGTGCCTTAAAAATAC+AGG | - | chr3.1:92669140-92669159 | None:intergenic | 30.0% | |
| ACACATGAATTATGCTTTGA+TGG | + | chr3.1:92671183-92671202 | MS.gene68151:CDS | 30.0% | |
| ACTATGATAGAGGTTCAATT+TGG | - | chr3.1:92668750-92668769 | None:intergenic | 30.0% | |
| ATACACAACAACAACAACAA+AGG | - | chr3.1:92669533-92669552 | None:intergenic | 30.0% | |
| ATCTATGACATAGGTATGTA+TGG | - | chr3.1:92669762-92669781 | None:intergenic | 30.0% | |
| ATGCAGGAGAAAAACTAAAA+TGG | - | chr3.1:92668675-92668694 | None:intergenic | 30.0% | |
| ATTGAACCTCTATCATAGTT+TGG | + | chr3.1:92668751-92668770 | MS.gene68151:intron | 30.0% | |
| ATTTGTGATCAATGCAAAGA+CGG | + | chr3.1:92668500-92668519 | MS.gene68151:CDS | 30.0% | |
| CAAATGGCAAGAACTATTAA+CGG | - | chr3.1:92668797-92668816 | None:intergenic | 30.0% | |
| CAAGAGAAGAAACAACAAAT+TGG | + | chr3.1:92669856-92669875 | MS.gene68151:CDS | 30.0% | |
| CACATGAATTATGCTTTGAT+GGG | + | chr3.1:92671184-92671203 | MS.gene68151:CDS | 30.0% | |
| GAAGAAACAACAAATTGGTT+TGG | + | chr3.1:92669861-92669880 | MS.gene68151:CDS | 30.0% | |
| GAGTTTATGAACTATCTTAC+GGG | - | chr3.1:92668939-92668958 | None:intergenic | 30.0% | |
| GTAGAATATGGTGATCTAAA+CGG | + | chr3.1:92670515-92670534 | MS.gene68151:intron | 30.0% | |
| TACTGCTTATCATTTCATGA+GGG | + | chr3.1:92671228-92671247 | MS.gene68151:CDS | 30.0% | |
| TAGAATATGGTGATCTAAAC+GGG | + | chr3.1:92670516-92670535 | MS.gene68151:intron | 30.0% | |
| TCAAAAAGAAGTTCAACAGT+TGG | + | chr3.1:92669462-92669481 | MS.gene68151:intron | 30.0% | |
| TTACTGCTTATCATTTCATG+AGG | + | chr3.1:92671227-92671246 | MS.gene68151:CDS | 30.0% | |
| TTTCAGCTAAGACAAAACAA+AGG | - | chr3.1:92669653-92669672 | None:intergenic | 30.0% | |
| ! | AATTTTTCATTGCCTCTAGT+TGG | + | chr3.1:92669671-92669690 | MS.gene68151:intron | 30.0% |
| ! | ATTTTTCATTGCCTCTAGTT+GGG | + | chr3.1:92669672-92669691 | MS.gene68151:intron | 30.0% |
| ! | CTTAATTTGATAAGTGGGAA+AGG | + | chr3.1:92669060-92669079 | MS.gene68151:intron | 30.0% |
| ! | CTTTTCGATTATCCTGTTAA+TGG | + | chr3.1:92668533-92668552 | MS.gene68151:CDS | 30.0% |
| ! | TTTTGCACCTGCATTAAATT+TGG | - | chr3.1:92669793-92669812 | None:intergenic | 30.0% |
| !! | GTATTTGATTTGATAGGAAG+TGG | + | chr3.1:92670933-92670952 | MS.gene68151:intron | 30.0% |
| !!! | TGCGGTTCATTTTGATTTAA+TGG | + | chr3.1:92669017-92669036 | MS.gene68151:intron | 30.0% |
| AACATCCTAAACATGAGTCT+TGG | - | chr3.1:92670011-92670030 | None:intergenic | 35.0% | |
| ACCATACCAAACTATGATAG+AGG | - | chr3.1:92668760-92668779 | None:intergenic | 35.0% | |
| ACCTCTATCATAGTTTGGTA+TGG | + | chr3.1:92668756-92668775 | MS.gene68151:intron | 35.0% | |
| AGCTATACAATGAGGTTTGA+TGG | + | chr3.1:92669885-92669904 | MS.gene68151:CDS | 35.0% | |
| AGTTAGATCTCACCATTAAC+AGG | - | chr3.1:92668548-92668567 | None:intergenic | 35.0% | |
| CAGTGATAAACTTACTGTGA+TGG | - | chr3.1:92670236-92670255 | None:intergenic | 35.0% | |
| CATGTCTCGGGAAATAATAA+TGG | + | chr3.1:92669936-92669955 | MS.gene68151:CDS | 35.0% | |
| CTCCAATAGCATTCATATTC+CGG | - | chr3.1:92670965-92670984 | None:intergenic | 35.0% | |
| GAATATGAATGCTATTGGAG+GGG | + | chr3.1:92670965-92670984 | MS.gene68151:CDS | 35.0% | |
| GACTGTAACTGTTTATGGTT+TGG | + | chr3.1:92668705-92668724 | MS.gene68151:intron | 35.0% | |
| GATAGAGGTTCAATTTGGTT+CGG | - | chr3.1:92668745-92668764 | None:intergenic | 35.0% | |
| GATAGGACTGTAACTGTTTA+TGG | + | chr3.1:92668700-92668719 | MS.gene68151:intron | 35.0% | |
| GGAATATGAATGCTATTGGA+GGG | + | chr3.1:92670964-92670983 | MS.gene68151:CDS | 35.0% | |
| TATGCTAACTTATGCCCTAA+AGG | - | chr3.1:92669282-92669301 | None:intergenic | 35.0% | |
| TCACATGTTGTGACTTTGTA+AGG | + | chr3.1:92669583-92669602 | MS.gene68151:intron | 35.0% | |
| TGAAATGATAAGCAGTAACG+AGG | - | chr3.1:92671225-92671244 | None:intergenic | 35.0% | |
| TGGCGAACAAATGAAAATAG+AGG | + | chr3.1:92670539-92670558 | MS.gene68151:intron | 35.0% | |
| TGTCATGTAGTGACAACAAT+GGG | + | chr3.1:92669820-92669839 | MS.gene68151:CDS | 35.0% | |
| TTGCTTAACATGTGCCTTTA+GGG | + | chr3.1:92669265-92669284 | MS.gene68151:intron | 35.0% | |
| TTTGTGATCAATGCAAAGAC+GGG | + | chr3.1:92668501-92668520 | MS.gene68151:CDS | 35.0% | |
| ! | ACAAAAGTAGCTGTAGCTTT+TGG | + | chr3.1:92671001-92671020 | MS.gene68151:CDS | 35.0% |
| ! | CATGTTTAGGATGTTTGACA+TGG | + | chr3.1:92670016-92670035 | MS.gene68151:CDS | 35.0% |
| ! | GAAGCTTCTGGAAAAATCAT+TGG | - | chr3.1:92670206-92670225 | None:intergenic | 35.0% |
| ! | GGAAAAATCATTGGTGGTAA+TGG | - | chr3.1:92670197-92670216 | None:intergenic | 35.0% |
| ! | TTTCTCCTGCATTGATAGAT+AGG | + | chr3.1:92668683-92668702 | MS.gene68151:intron | 35.0% |
| !! | AAAATCATTGGTGGTAATGG+TGG | - | chr3.1:92670194-92670213 | None:intergenic | 35.0% |
| !! | GGAAATAATAATGGACAAGG+AGG | + | chr3.1:92669945-92669964 | MS.gene68151:CDS | 35.0% |
| !! | TAAGCAAAATAAGCATTGGG+TGG | + | chr3.1:92669313-92669332 | MS.gene68151:intron | 35.0% |
| !! | TCGGGAAATAATAATGGACA+AGG | + | chr3.1:92669942-92669961 | MS.gene68151:CDS | 35.0% |
| !!! | TAGACTAATACTTTTTCGCC+TGG | + | chr3.1:92669560-92669579 | MS.gene68151:intron | 35.0% |
| AAAAAAGTCCAACGCTGTTC+AGG | + | chr3.1:92670716-92670735 | MS.gene68151:intron | 40.0% | |
| AATATGGTGATCTAAACGGG+TGG | + | chr3.1:92670519-92670538 | MS.gene68151:intron | 40.0% | |
| ACAAAACTCTTGCGATTGAC+CGG | - | chr3.1:92668825-92668844 | None:intergenic | 40.0% | |
| ACAGACATGACATTGTGGTA+TGG | + | chr3.1:92671049-92671068 | MS.gene68151:CDS | 40.0% | |
| ACAGTCCTATCTATCAATGC+AGG | - | chr3.1:92668691-92668710 | None:intergenic | 40.0% | |
| ACCCTAACTAAAACAGGAGA+GGG | - | chr3.1:92669628-92669647 | None:intergenic | 40.0% | |
| AGTGATCCCTTCTCTCAAAA+GGG | - | chr3.1:92671104-92671123 | None:intergenic | 40.0% | |
| ATCTGCCTTTGTTCCATCAA+TGG | - | chr3.1:92668459-92668478 | None:intergenic | 40.0% | |
| ATGGTACAGACATGACATTG+TGG | + | chr3.1:92671044-92671063 | MS.gene68151:CDS | 40.0% | |
| ATGGTTGCAGCAAGGAAATA+TGG | + | chr3.1:92671025-92671044 | MS.gene68151:CDS | 40.0% | |
| ATTCTTTCAGTGGCCATTGA+TGG | + | chr3.1:92668443-92668462 | MS.gene68151:CDS | 40.0% | |
| CAAGTGGATGGTAAGAGAAT+TGG | - | chr3.1:92671153-92671172 | None:intergenic | 40.0% | |
| CAATTCTCTTACCATCCACT+TGG | + | chr3.1:92671151-92671170 | MS.gene68151:CDS | 40.0% | |
| CATTTCATGAGGGCTAATTC+TGG | + | chr3.1:92671238-92671257 | MS.gene68151:CDS | 40.0% | |
| CGGAATATGAATGCTATTGG+AGG | + | chr3.1:92670963-92670982 | MS.gene68151:CDS | 40.0% | |
| CTGTCATGTAGTGACAACAA+TGG | + | chr3.1:92669819-92669838 | MS.gene68151:CDS | 40.0% | |
| GATGTTGAGCAGTATTGCAT+AGG | - | chr3.1:92670083-92670102 | None:intergenic | 40.0% | |
| GGTTTGGAAGCTATACAATG+AGG | + | chr3.1:92669877-92669896 | MS.gene68151:CDS | 40.0% | |
| GTTCATAAACTCAACCAACC+TGG | + | chr3.1:92668947-92668966 | MS.gene68151:intron | 40.0% | |
| GTTGCAAACAAAAGCTTCTC+CGG | - | chr3.1:92668416-92668435 | None:intergenic | 40.0% | |
| GTTGCTTAACATGTGCCTTT+AGG | + | chr3.1:92669264-92669283 | MS.gene68151:intron | 40.0% | |
| TGCCGGAATATGAATGCTAT+TGG | + | chr3.1:92670960-92670979 | MS.gene68151:CDS | 40.0% | |
| TTGATCACAAATGACAGTGC+CGG | - | chr3.1:92668492-92668511 | None:intergenic | 40.0% | |
| ! | AACTGTTTATGGTTTGGCTC+AGG | + | chr3.1:92668711-92668730 | MS.gene68151:intron | 40.0% |
| ! | ACTGTTTATGGTTTGGCTCA+GGG | + | chr3.1:92668712-92668731 | MS.gene68151:intron | 40.0% |
| ! | ATGAGTCTTGGATTTTGAGC+AGG | - | chr3.1:92669999-92670018 | None:intergenic | 40.0% |
| ! | GCTTCTGGAAAAATCATTGG+TGG | - | chr3.1:92670203-92670222 | None:intergenic | 40.0% |
| !! | AGTAGCTGTAGCTTTTGGAA+TGG | + | chr3.1:92671006-92671025 | MS.gene68151:CDS | 40.0% |
| AAAAGAAACACGCGCCAGAT+AGG | + | chr3.1:92670763-92670782 | MS.gene68151:intron | 45.0% | |
| AAAGAAACACGCGCCAGATA+GGG | + | chr3.1:92670764-92670783 | MS.gene68151:intron | 45.0% | |
| AAGGCAGATACTATGCTCAC+CGG | + | chr3.1:92668470-92668489 | MS.gene68151:CDS | 45.0% | |
| AAGGCCACCCTAACTAAAAC+AGG | - | chr3.1:92669634-92669653 | None:intergenic | 45.0% | |
| ACATTGTGGTATGGCCTGAA+AGG | + | chr3.1:92671058-92671077 | MS.gene68151:CDS | 45.0% | |
| AGCATTTCACGAACTCAACC+AGG | - | chr3.1:92668968-92668987 | None:intergenic | 45.0% | |
| AGTGGCCATTGATGGAACAA+AGG | + | chr3.1:92668451-92668470 | MS.gene68151:CDS | 45.0% | |
| ATGTGGAGGAGGAGAAGAAA+TGG | - | chr3.1:92670144-92670163 | None:intergenic | 45.0% | |
| ATGTGTGTGACTACACCAAG+TGG | - | chr3.1:92671169-92671188 | None:intergenic | 45.0% | |
| CAAAGTCACAACATGTGACC+AGG | - | chr3.1:92669581-92669600 | None:intergenic | 45.0% | |
| CACCCTAACTAAAACAGGAG+AGG | - | chr3.1:92669629-92669648 | None:intergenic | 45.0% | |
| CAGTGATCCCTTCTCTCAAA+AGG | - | chr3.1:92671105-92671124 | None:intergenic | 45.0% | |
| CATTGTGGTATGGCCTGAAA+GGG | + | chr3.1:92671059-92671078 | MS.gene68151:CDS | 45.0% | |
| CCAACACATTAGGAGGTCTA+GGG | + | chr3.1:92670333-92670352 | MS.gene68151:intron | 45.0% | |
| CCCTAACTAAAACAGGAGAG+GGG | - | chr3.1:92669627-92669646 | None:intergenic | 45.0% | |
| CCTAACTAAAACAGGAGAGG+GGG | - | chr3.1:92669626-92669645 | None:intergenic | 45.0% | |
| CCTAGACCTCCTAATGTGTT+GGG | - | chr3.1:92670335-92670354 | None:intergenic | 45.0% | |
| TCTCTCAAAAGGGTCCTGTA+AGG | - | chr3.1:92671094-92671113 | None:intergenic | 45.0% | |
| TGACATGGAGATGTATGCTG+TGG | + | chr3.1:92670031-92670050 | MS.gene68151:CDS | 45.0% | |
| TGATAGGAAGTGGACAATGC+CGG | + | chr3.1:92670943-92670962 | MS.gene68151:intron | 45.0% | |
| TGGTTGTTCTGCACATGTCT+CGG | + | chr3.1:92669923-92669942 | MS.gene68151:CDS | 45.0% | |
| TGTGGAGGAGGAGAAGAAAT+GGG | - | chr3.1:92670143-92670162 | None:intergenic | 45.0% | |
| TTTCACGAACTCAACCAGGT+TGG | - | chr3.1:92668964-92668983 | None:intergenic | 45.0% | |
| TTTCCTAAGCAGAAGGTCGT+AGG | - | chr3.1:92670796-92670815 | None:intergenic | 45.0% | |
| ! | AATGGTGGAAGTTGTGGCAT+TGG | - | chr3.1:92670179-92670198 | None:intergenic | 45.0% |
| ! | ATGGTGGAAGTTGTGGCATT+GGG | - | chr3.1:92670178-92670197 | None:intergenic | 45.0% |
| ! | ATTGGGGGTAGGTTGAAATG+TGG | - | chr3.1:92670161-92670180 | None:intergenic | 45.0% |
| ! | CAGTATTGCATAGGTTGAGC+AGG | - | chr3.1:92670074-92670093 | None:intergenic | 45.0% |
| ! | GTTCTTGCCATTTGCCAAAC+CGG | + | chr3.1:92668803-92668822 | MS.gene68151:intron | 45.0% |
| ! | TTTGATGGAGCACCAGACTT+AGG | + | chr3.1:92669900-92669919 | MS.gene68151:CDS | 45.0% |
| !! | ACAGGACCCTTTTGAGAGAA+GGG | + | chr3.1:92671095-92671114 | MS.gene68151:CDS | 45.0% |
| !! | ATGCTTTGATGGGCTCAACT+AGG | + | chr3.1:92671194-92671213 | MS.gene68151:CDS | 45.0% |
| !! | TACAGGACCCTTTTGAGAGA+AGG | + | chr3.1:92671094-92671113 | MS.gene68151:CDS | 45.0% |
| !! | TGCTTTGATGGGCTCAACTA+GGG | + | chr3.1:92671195-92671214 | MS.gene68151:CDS | 45.0% |
| !!! | CCCCTCTCCTGTTTTAGTTA+GGG | + | chr3.1:92669624-92669643 | MS.gene68151:intron | 45.0% |
| !!! | CTCTCCTGTTTTAGTTAGGG+TGG | + | chr3.1:92669627-92669646 | MS.gene68151:intron | 45.0% |
| !!! | CTTTTGGAATGGTTGCAGCA+AGG | + | chr3.1:92671017-92671036 | MS.gene68151:CDS | 45.0% |
| AACAAGCGCTTGTAGCTCAG+TGG | - | chr3.1:92670831-92670850 | None:intergenic | 50.0% | |
| AAGAAACACGCGCCAGATAG+GGG | + | chr3.1:92670765-92670784 | MS.gene68151:intron | 50.0% | |
| AAGAGTCGGCCCAACACATT+AGG | + | chr3.1:92670323-92670342 | MS.gene68151:intron | 50.0% | |
| AAGGATCTCCTCTCCCTTTC+AGG | - | chr3.1:92671075-92671094 | None:intergenic | 50.0% | |
| AAGGGAGAGGAGATCCTTAC+AGG | + | chr3.1:92671077-92671096 | MS.gene68151:CDS | 50.0% | |
| ACTCTTGCGATTGACCGGTT+TGG | - | chr3.1:92668820-92668839 | None:intergenic | 50.0% | |
| ATGAGGGCTAATTCTGGTGC+TGG | + | chr3.1:92671244-92671263 | MS.gene68151:CDS | 50.0% | |
| CAAGGAGGACCAATGAGTTG+TGG | + | chr3.1:92669960-92669979 | MS.gene68151:CDS | 50.0% | |
| CCCAACACATTAGGAGGTCT+AGG | + | chr3.1:92670332-92670351 | MS.gene68151:intron | 50.0% | |
| CCCTAGACCTCCTAATGTGT+TGG | - | chr3.1:92670336-92670355 | None:intergenic | 50.0% | |
| GAACCTACGACCTTCTGCTT+AGG | + | chr3.1:92670790-92670809 | MS.gene68151:intron | 50.0% | |
| GATGGACATGCTGAAGCTTC+TGG | - | chr3.1:92670218-92670237 | None:intergenic | 50.0% | |
| GCACCTTCACCACAACTCAT+TGG | - | chr3.1:92669972-92669991 | None:intergenic | 50.0% | |
| GCAGAACAACCACCTAAGTC+TGG | - | chr3.1:92669915-92669934 | None:intergenic | 50.0% | |
| GCGTCTGTTTCCTAAGCAGA+AGG | - | chr3.1:92670803-92670822 | None:intergenic | 50.0% | |
| GGACCAATGAGTTGTGGTGA+AGG | + | chr3.1:92669966-92669985 | MS.gene68151:CDS | 50.0% | |
| GGTTGTTCTGCACATGTCTC+GGG | + | chr3.1:92669924-92669943 | MS.gene68151:CDS | 50.0% | |
| GTGTGACTACACCAAGTGGA+TGG | - | chr3.1:92671165-92671184 | None:intergenic | 50.0% | |
| TGCCTCTAGTTGGGACAGTT+GGG | + | chr3.1:92669681-92669700 | MS.gene68151:intron | 50.0% | |
| TGGTGGAAGTTGTGGCATTG+GGG | - | chr3.1:92670177-92670196 | None:intergenic | 50.0% | |
| TTGCCTCTAGTTGGGACAGT+TGG | + | chr3.1:92669680-92669699 | MS.gene68151:intron | 50.0% | |
| ! | ATGAGTTGTGGTGAAGGTGC+TGG | + | chr3.1:92669972-92669991 | MS.gene68151:CDS | 50.0% |
| ! | GAAATGGGTGGTGCCAATGT+TGG | - | chr3.1:92670128-92670147 | None:intergenic | 50.0% |
| ! | GGTAGGTTGAAATGTGGAGG+AGG | - | chr3.1:92670155-92670174 | None:intergenic | 50.0% |
| ! | GTTTATGGTTTGGCTCAGGG+AGG | + | chr3.1:92668715-92668734 | MS.gene68151:intron | 50.0% |
| !! | CGATTGACCGGTTTGGCAAA+TGG | - | chr3.1:92668813-92668832 | None:intergenic | 50.0% |
| !! | GGTGGTAATGGTGGAAGTTG+TGG | - | chr3.1:92670185-92670204 | None:intergenic | 50.0% |
| !!! | CCCCCTCTCCTGTTTTAGTT+AGG | + | chr3.1:92669623-92669642 | MS.gene68151:intron | 50.0% |
| AACCACTGCCTGAACAGCGT+TGG | - | chr3.1:92670727-92670746 | None:intergenic | 55.0% | |
| AGTCGGCCCAACACATTAGG+AGG | + | chr3.1:92670326-92670345 | MS.gene68151:intron | 55.0% | |
| ATCCCCACCACCACCAACAT+TGG | + | chr3.1:92670112-92670131 | MS.gene68151:CDS | 55.0% | |
| GGAGGAGGAGAAGAAATGGG+TGG | - | chr3.1:92670140-92670159 | None:intergenic | 55.0% | |
| TCGTAGGTTCGACCCCTATC+TGG | - | chr3.1:92670780-92670799 | None:intergenic | 55.0% | |
| TGCCCAACTGTCCCAACTAG+AGG | - | chr3.1:92669686-92669705 | None:intergenic | 55.0% | |
| TGGTATGGCCTGAAAGGGAG+AGG | + | chr3.1:92671064-92671083 | MS.gene68151:CDS | 55.0% | |
| ! | ATGGGTGGTGCCAATGTTGG+TGG | - | chr3.1:92670125-92670144 | None:intergenic | 55.0% |
| ! | GAAGTTGTGGCATTGGGGGT+AGG | - | chr3.1:92670172-92670191 | None:intergenic | 55.0% |
| ! | GATGGAGCACCAGACTTAGG+TGG | + | chr3.1:92669903-92669922 | MS.gene68151:CDS | 55.0% |
| ! | GGGGGTAGGTTGAAATGTGG+AGG | - | chr3.1:92670158-92670177 | None:intergenic | 55.0% |
| ! | GGTGGAAGTTGTGGCATTGG+GGG | - | chr3.1:92670176-92670195 | None:intergenic | 55.0% |
| ! | TAGGTTGAGCAGGCTGAGCA+AGG | - | chr3.1:92670064-92670083 | None:intergenic | 55.0% |
| !! | AATGTTGGTGGTGGTGGGGA+TGG | - | chr3.1:92670113-92670132 | None:intergenic | 55.0% |
| !! | ATGTTGGTGGTGGTGGGGAT+GGG | - | chr3.1:92670112-92670131 | None:intergenic | 55.0% |
| !! | GTGCCAATGTTGGTGGTGGT+GGG | - | chr3.1:92670118-92670137 | None:intergenic | 55.0% |
| !! | TGCCAATGTTGGTGGTGGTG+GGG | - | chr3.1:92670117-92670136 | None:intergenic | 55.0% |
| AGTTGGGACAGTTGGGCAGC+TGG | + | chr3.1:92669688-92669707 | MS.gene68151:intron | 60.0% | |
| GTCCAACGCTGTTCAGGCAG+TGG | + | chr3.1:92670722-92670741 | MS.gene68151:intron | 60.0% | |
| TGAGCAGGCTGAGCAAGGAG+TGG | - | chr3.1:92670059-92670078 | None:intergenic | 60.0% | |
| ! | GGTGGTGCCAATGTTGGTGG+TGG | - | chr3.1:92670122-92670141 | None:intergenic | 60.0% |
| !! | GGTGCCAATGTTGGTGGTGG+TGG | - | chr3.1:92670119-92670138 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGGGATGGGT+TGG | - | chr3.1:92670108-92670127 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92668404 | 92671300 | 92668404 | ID=MS.gene68151 |
| chr3.1 | mRNA | 92668404 | 92671300 | 92668404 | ID=MS.gene68151.t1;Parent=MS.gene68151 |
| chr3.1 | exon | 92668404 | 92668554 | 92668404 | ID=MS.gene68151.t1.exon1;Parent=MS.gene68151.t1 |
| chr3.1 | CDS | 92668404 | 92668554 | 92668404 | ID=cds.MS.gene68151.t1;Parent=MS.gene68151.t1 |
| chr3.1 | exon | 92669805 | 92670240 | 92669805 | ID=MS.gene68151.t1.exon2;Parent=MS.gene68151.t1 |
| chr3.1 | CDS | 92669805 | 92670240 | 92669805 | ID=cds.MS.gene68151.t1;Parent=MS.gene68151.t1 |
| chr3.1 | exon | 92670949 | 92671300 | 92670949 | ID=MS.gene68151.t1.exon3;Parent=MS.gene68151.t1 |
| chr3.1 | CDS | 92670949 | 92671300 | 92670949 | ID=cds.MS.gene68151.t1;Parent=MS.gene68151.t1 |
| Gene Sequence |
| Protein sequence |
