Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68360.t1 | XP_003612320.1 | 97.5 | 922 | 20 | 1 | 1 | 919 | 1 | 922 | 2.20E-223 | 785.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68360.t1 | Q8S2T0 | 55.5 | 771 | 325 | 6 | 163 | 919 | 22 | 788 | 1.0e-51 | 206.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68360.t1 | G7K011 | 97.5 | 922 | 20 | 1 | 1 | 919 | 1 | 922 | 1.6e-223 | 785.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene68360 | 0.8701 | 1.88E-66 | -1.69E-46 |
| MS.gene049368 | MS.gene68360 | 0.814336 | 1.62E-51 | -1.69E-46 |
| MS.gene049585 | MS.gene68360 | 0.832154 | 1.11E-55 | -1.69E-46 |
| MS.gene049744 | MS.gene68360 | 0.815317 | 9.84E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene68360 | 0.822312 | 2.53E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene68360 | 0.813517 | 2.46E-51 | -1.69E-46 |
| MS.gene050224 | MS.gene68360 | 0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene68360 | 0.850385 | 1.76E-60 | -1.69E-46 |
| MS.gene051102 | MS.gene68360 | 0.863059 | 3.26E-64 | -1.69E-46 |
| MS.gene051381 | MS.gene68360 | 0.814482 | 1.51E-51 | -1.69E-46 |
| MS.gene051642 | MS.gene68360 | 0.821022 | 5.03E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene68360 | 0.833187 | 6.16E-56 | -1.69E-46 |
| MS.gene051724 | MS.gene68360 | 0.825961 | 3.52E-54 | -1.69E-46 |
| MS.gene052072 | MS.gene68360 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene052168 | MS.gene68360 | 0.805042 | 1.62E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene68360 | 0.874248 | 7.83E-68 | -1.69E-46 |
| MS.gene052609 | MS.gene68360 | 0.893968 | 3.83E-75 | -1.69E-46 |
| MS.gene052932 | MS.gene68360 | 0.830923 | 2.23E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene68360 | 0.805856 | 1.09E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene68360 | 0.812541 | 4.03E-51 | -1.69E-46 |
| MS.gene05315 | MS.gene68360 | 0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene05350 | MS.gene68360 | 0.818313 | 2.09E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene68360 | 0.833613 | 4.82E-56 | -1.69E-46 |
| MS.gene055313 | MS.gene68360 | 0.854376 | 1.28E-61 | -1.69E-46 |
| MS.gene055314 | MS.gene68360 | 0.834432 | 3.01E-56 | -1.69E-46 |
| MS.gene055465 | MS.gene68360 | 0.81373 | 2.21E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene68360 | 0.818368 | 2.03E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene68360 | 0.836492 | 9.06E-57 | -1.69E-46 |
| MS.gene055864 | MS.gene68360 | 0.839457 | 1.57E-57 | -1.69E-46 |
| MS.gene056045 | MS.gene68360 | 0.80755 | 4.79E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene68360 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene68360 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene68360 | 0.819643 | 1.04E-52 | -1.69E-46 |
| MS.gene057360 | MS.gene68360 | 0.853728 | 1.97E-61 | -1.69E-46 |
| MS.gene057915 | MS.gene68360 | 0.803773 | 2.97E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene68360 | 0.80935 | 1.98E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene68360 | 0.84612 | 2.65E-59 | -1.69E-46 |
| MS.gene058638 | MS.gene68360 | 0.802773 | 4.79E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene68360 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene68360 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene058919 | MS.gene68360 | 0.829514 | 4.93E-55 | -1.69E-46 |
| MS.gene05897 | MS.gene68360 | 0.805016 | 1.64E-49 | -1.69E-46 |
| MS.gene059144 | MS.gene68360 | 0.802375 | 5.78E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene68360 | 0.827174 | 1.81E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene68360 | 0.812865 | 3.42E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene68360 | 0.807758 | 4.32E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene68360 | 0.803837 | 2.88E-49 | -1.69E-46 |
| MS.gene060191 | MS.gene68360 | 0.803133 | 4.03E-49 | -1.69E-46 |
| MS.gene060380 | MS.gene68360 | 0.801954 | 7.06E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene68360 | 0.820303 | 7.37E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene68360 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene68360 | 0.819879 | 9.21E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene68360 | 0.814777 | 1.30E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene68360 | 0.824394 | 8.27E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058237 | MS.gene68360 | PPI |
| MS.gene68360 | MS.gene070223 | PPI |
| MS.gene027794 | MS.gene68360 | PPI |
| MS.gene047988 | MS.gene68360 | PPI |
| MS.gene68360 | MS.gene61712 | PPI |
| MS.gene02723 | MS.gene68360 | PPI |
| MS.gene008939 | MS.gene68360 | PPI |
| MS.gene00155 | MS.gene68360 | PPI |
| MS.gene68360 | MS.gene065220 | PPI |
| MS.gene02153 | MS.gene68360 | PPI |
| MS.gene069114 | MS.gene68360 | PPI |
| MS.gene00013 | MS.gene68360 | PPI |
| MS.gene041802 | MS.gene68360 | PPI |
| MS.gene070689 | MS.gene68360 | PPI |
| MS.gene061266 | MS.gene68360 | PPI |
| MS.gene55989 | MS.gene68360 | PPI |
| MS.gene046436 | MS.gene68360 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68360.t1 | MTR_5g023770 | 97.180 | 922 | 23 | 1 | 1 | 919 | 1 | 922 | 0.0 | 1786 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68360.t1 | AT5G66030 | 64.202 | 771 | 258 | 7 | 163 | 919 | 22 | 788 | 0.0 | 863 |
| MS.gene68360.t1 | AT5G66030 | 62.924 | 766 | 253 | 6 | 163 | 919 | 22 | 765 | 0.0 | 835 |
| MS.gene68360.t1 | AT5G66030 | 63.803 | 710 | 246 | 5 | 163 | 863 | 22 | 729 | 0.0 | 779 |
| MS.gene68360.t1 | AT5G66030 | 62.006 | 658 | 239 | 5 | 163 | 811 | 22 | 677 | 0.0 | 705 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTCTCATTTACTTAA+TGG | 0.104508 | 5.1:+14458796 | MS.gene68360:CDS |
| TTAATATGTACTTCTTATTT+TGG | 0.160688 | 5.1:-14453770 | None:intergenic |
| CACTTTCATCCTTCCTTTGC+TGG | 0.174319 | 5.1:-14448386 | None:intergenic |
| AGCTTCTTCGGATGCAATTC+TGG | 0.218013 | 5.1:-14448994 | None:intergenic |
| GTAAATATTGTATTGGAAAA+TGG | 0.236129 | 5.1:+14448411 | MS.gene68360:CDS |
| TGCTAGCTCTTCCTCCCTTT+GGG | 0.241742 | 5.1:-14457298 | None:intergenic |
| ACTAACTTCTTTCTGTATAC+TGG | 0.250791 | 5.1:-14448883 | None:intergenic |
| ATGTACAGCCTTGCATAAAT+TGG | 0.254936 | 5.1:+14456876 | MS.gene68360:intron |
| TTTGCAGAATTTGGAGAGTT+TGG | 0.258175 | 5.1:+14451884 | MS.gene68360:intron |
| AGAATTCATTCTGAGATTTC+AGG | 0.260515 | 5.1:-14448818 | None:intergenic |
| GAAGTATTGCTACCAGTTAT+TGG | 0.264528 | 5.1:+14458094 | MS.gene68360:CDS |
| GTGCTAGCTCTTCCTCCCTT+TGG | 0.277076 | 5.1:-14457299 | None:intergenic |
| CCATCTGACAAATGCTCCTC+TGG | 0.321478 | 5.1:-14448591 | None:intergenic |
| AAGCTGGGAGGCTGCATCTC+TGG | 0.322039 | 5.1:+14453687 | MS.gene68360:CDS |
| TGCAGTTGCTCTCGGCAATT+TGG | 0.322122 | 5.1:-14453726 | None:intergenic |
| GACTCAAGAGCCTCCTCTTT+AGG | 0.322229 | 5.1:-14451182 | None:intergenic |
| ATTAGTTAGAACCTCTTCTT+TGG | 0.331826 | 5.1:-14453925 | None:intergenic |
| GAGATGGAGGCAGCATCAAC+TGG | 0.349106 | 5.1:+14452613 | MS.gene68360:CDS |
| GATCCTGAAGAGTCGCTTGC+AGG | 0.356621 | 5.1:-14458756 | None:intergenic |
| CATTGCTAAACCCCTCAATC+TGG | 0.360562 | 5.1:-14448848 | None:intergenic |
| GAGATACCATTGAGGATTTA+CGG | 0.361062 | 5.1:+14451147 | MS.gene68360:CDS |
| CTCTGATGGAAATGAAGGTT+TGG | 0.379222 | 5.1:+14448758 | MS.gene68360:CDS |
| CTCTCTGAGCAGCTTGTAGA+AGG | 0.379695 | 5.1:+14449068 | MS.gene68360:CDS |
| AAGTATTGCTACCAGTTATT+GGG | 0.380552 | 5.1:+14458095 | MS.gene68360:CDS |
| ATTCACCTGCAGTGAAGAAA+TGG | 0.390871 | 5.1:-14451955 | None:intergenic |
| GCAATTGTCACTTGCAGAAA+AGG | 0.391238 | 5.1:+14451208 | MS.gene68360:CDS |
| GTCAGATGGAAACGAAGTTC+TGG | 0.395150 | 5.1:+14448605 | MS.gene68360:CDS |
| AACGAAGGTCCGACTGATAC+TGG | 0.405806 | 5.1:+14448531 | MS.gene68360:CDS |
| AGAAGATATGCAGAAGGAAT+TGG | 0.406447 | 5.1:+14456286 | MS.gene68360:CDS |
| AAGGTGCTTCAAAGCTTCTT+CGG | 0.415250 | 5.1:-14449006 | None:intergenic |
| CCATCTGACAAATGCTCCTC+GGG | 0.415545 | 5.1:-14448507 | None:intergenic |
| AACTTGACGCCAAGTTGAAT+AGG | 0.415765 | 5.1:+14449262 | MS.gene68360:CDS |
| TGAAGCAGCATCCCAATAAC+TGG | 0.416643 | 5.1:-14458106 | None:intergenic |
| GCATCTGGTGAAGGTGATAC+TGG | 0.418417 | 5.1:+14448294 | MS.gene68360:CDS |
| TCAAAAGAAGGACGCGGACT+TGG | 0.421112 | 5.1:+14455628 | MS.gene68360:CDS |
| ATCTTAAAGCTTCTTGAGAC+AGG | 0.425588 | 5.1:+14457949 | MS.gene68360:CDS |
| TTGTTGCAATGCTGACTGTT+GGG | 0.429814 | 5.1:-14449801 | None:intergenic |
| CCTAAAAGAGAAAGAGGAAT+GGG | 0.431476 | 5.1:+14456098 | MS.gene68360:CDS |
| CATCTGAGTACGCAATTTGA+AGG | 0.437273 | 5.1:-14449025 | None:intergenic |
| AACAAGAAGTCGATGGCATC+TGG | 0.438022 | 5.1:+14448279 | MS.gene68360:CDS |
| AGTTGAATAGGCTTCACAAA+AGG | 0.438247 | 5.1:+14449274 | MS.gene68360:CDS |
| AGTCCTGCAAGCGACTCTTC+AGG | 0.438561 | 5.1:+14458753 | MS.gene68360:CDS |
| CGATTCTCTGATGGAAATGA+AGG | 0.440056 | 5.1:+14448753 | MS.gene68360:CDS |
| ATCTCTCATACTGAGGATCT+TGG | 0.441672 | 5.1:-14453886 | None:intergenic |
| TCCATCTGACAAATGCTCCT+CGG | 0.447011 | 5.1:-14448508 | None:intergenic |
| AACGAAGTTCTGGCTGATAC+TGG | 0.448934 | 5.1:+14448615 | MS.gene68360:CDS |
| GAGAATCGATTATCTAATAC+AGG | 0.455565 | 5.1:-14448738 | None:intergenic |
| AATGAAGGTCCGGCTGATAC+TGG | 0.456678 | 5.1:+14448447 | MS.gene68360:CDS |
| GGAGGTTTCTCACTTAAAAC+AGG | 0.457424 | 5.1:+14452678 | MS.gene68360:CDS |
| TGAGTCCATTTCTTCACTGC+AGG | 0.458180 | 5.1:+14451950 | MS.gene68360:CDS |
| AAGTTAGTGGTACGGAAGAC+GGG | 0.460841 | 5.1:+14448898 | MS.gene68360:CDS |
| AAGCTGCTCAGAGAGATCTT+TGG | 0.462974 | 5.1:-14449060 | None:intergenic |
| ACATGGAAAGATCAAAGAAA+AGG | 0.464816 | 5.1:+14457893 | MS.gene68360:CDS |
| TGAAAGCCATGGATGGTGAT+AGG | 0.465393 | 5.1:+14449861 | MS.gene68360:CDS |
| TCTTTCCATGTTGCGAAGCT+CGG | 0.465394 | 5.1:-14457881 | None:intergenic |
| ATGAATCAGCAAAGCAAAGA+TGG | 0.471482 | 5.1:+14448702 | MS.gene68360:CDS |
| GTCACTTGCAGAAAAGGAAC+AGG | 0.473473 | 5.1:+14451214 | MS.gene68360:CDS |
| GCAAGCGACTCTTCAGGATC+TGG | 0.473959 | 5.1:+14458759 | MS.gene68360:CDS |
| TCACGATGAGCTTCTGCAAA+TGG | 0.473971 | 5.1:+14448788 | MS.gene68360:CDS |
| ATCTGATGGAAATGAAGGTC+CGG | 0.480640 | 5.1:+14448437 | MS.gene68360:CDS |
| AGATGCCGAACATCAAATTC+TGG | 0.481340 | 5.1:+14456921 | MS.gene68360:CDS |
| GAATCAGACAAATGCTCCTC+AGG | 0.483026 | 5.1:-14448675 | None:intergenic |
| GCTCTCTGCTAAACATCAAA+AGG | 0.484789 | 5.1:+14451674 | MS.gene68360:CDS |
| CATGGAAAGATCAAAGAAAA+GGG | 0.485019 | 5.1:+14457894 | MS.gene68360:CDS |
| CTATACCAGAATTTGATGTT+CGG | 0.489165 | 5.1:-14456926 | None:intergenic |
| GGCTAGACAACAAGCCCAAA+GGG | 0.489632 | 5.1:+14457284 | MS.gene68360:CDS |
| GCAGAATTTGGAGAGTTTGG+AGG | 0.490026 | 5.1:+14451887 | MS.gene68360:intron |
| TTCTTGAAATCCCAGATTGA+GGG | 0.490247 | 5.1:+14448837 | MS.gene68360:CDS |
| TTCTTTCTCGTTATTAGCCA+TGG | 0.491838 | 5.1:-14455850 | None:intergenic |
| GGCTTATCTGATGGAAATGA+AGG | 0.492082 | 5.1:+14448432 | MS.gene68360:CDS |
| GAAGAGTCGCTTGCAGGACT+CGG | 0.492796 | 5.1:-14458750 | None:intergenic |
| GTTATCGATAACAGAAGAAA+GGG | 0.494196 | 5.1:+14455800 | MS.gene68360:CDS |
| GTGTGTAGCTCAAAATAAGC+TGG | 0.495154 | 5.1:+14449203 | MS.gene68360:intron |
| CTCAGCTGCCTTTCTCCTAT+CGG | 0.496439 | 5.1:-14451931 | None:intergenic |
| CTCAGCAGATTCGTTTAACT+CGG | 0.497634 | 5.1:-14449768 | None:intergenic |
| AGGTGATACTGGTGGAAAGA+TGG | 0.501992 | 5.1:+14448305 | MS.gene68360:CDS |
| TGTTATCGATAACAGAAGAA+AGG | 0.505115 | 5.1:+14455799 | MS.gene68360:CDS |
| CTTGTTGCAATGCTGACTGT+TGG | 0.506458 | 5.1:-14449802 | None:intergenic |
| AAATCGTCTCCACAGCCAAC+AGG | 0.508271 | 5.1:+14457468 | MS.gene68360:CDS |
| TTAGATAATCGATTCTCTGA+TGG | 0.510758 | 5.1:+14448744 | MS.gene68360:CDS |
| AGAATCTAGAATTGCAGAGA+TGG | 0.511223 | 5.1:+14452597 | MS.gene68360:CDS |
| AGTATACAGAAAGAAGTTAG+TGG | 0.513067 | 5.1:+14448885 | MS.gene68360:CDS |
| GTTGAATAGGCTTCACAAAA+GGG | 0.513691 | 5.1:+14449275 | MS.gene68360:CDS |
| ACGCATTCAAGAAGTTCAAA+AGG | 0.518457 | 5.1:+14449305 | MS.gene68360:CDS |
| TCAACACCTAAAAGAGAAAG+AGG | 0.519235 | 5.1:+14456092 | MS.gene68360:CDS |
| TCATATCAGAATCAGACAAA+TGG | 0.519407 | 5.1:-14448362 | None:intergenic |
| GCTAATTCAGGAAGAAATTG+AGG | 0.520210 | 5.1:+14457432 | MS.gene68360:intron |
| CCAGAGGAGCATTTGTCAGA+TGG | 0.521431 | 5.1:+14448591 | MS.gene68360:CDS |
| AAGTGATGTAAATATTGTAT+TGG | 0.523227 | 5.1:+14448404 | MS.gene68360:CDS |
| ATTCTTGAAATCCCAGATTG+AGG | 0.523848 | 5.1:+14448836 | MS.gene68360:CDS |
| TTGTTGCCTATCACCATCCA+TGG | 0.524711 | 5.1:-14449867 | None:intergenic |
| GCGTTCATTGCAACCTAAAG+AGG | 0.525275 | 5.1:+14451169 | MS.gene68360:CDS |
| GAAGTTAGTGGTACGGAAGA+CGG | 0.526029 | 5.1:+14448897 | MS.gene68360:CDS |
| CCCGAGGAGCATTTGTCAGA+TGG | 0.527662 | 5.1:+14448507 | MS.gene68360:CDS |
| TTGTGAAAGAACTTCGAGAA+AGG | 0.527882 | 5.1:+14448931 | MS.gene68360:CDS |
| AATTTGATGTTCGGCATCTG+AGG | 0.535891 | 5.1:-14456917 | None:intergenic |
| GGGGTTTAGCAATGTTGAGA+GGG | 0.537454 | 5.1:+14448857 | MS.gene68360:CDS |
| TTGGAAAATGGCTTATCTGA+TGG | 0.538678 | 5.1:+14448423 | MS.gene68360:CDS |
| AACAAGGAAACAAGCAAATG+AGG | 0.539583 | 5.1:+14449835 | MS.gene68360:CDS |
| ATGGCCAGGTCAGCTTGAAT+CGG | 0.541503 | 5.1:+14453848 | MS.gene68360:intron |
| TGCACGTATGCAGTTGCTCT+CGG | 0.543333 | 5.1:-14453734 | None:intergenic |
| AAAATGTCAAGCAACAGATA+AGG | 0.544513 | 5.1:+14456037 | MS.gene68360:CDS |
| AGCACGGCTCAGAGCAGCCA+TGG | 0.546795 | 5.1:+14452642 | MS.gene68360:CDS |
| TGCTGTATCCGATAGGAGAA+AGG | 0.548396 | 5.1:+14451923 | MS.gene68360:CDS |
| TTTGTGAAGCCTATTCAACT+TGG | 0.549790 | 5.1:-14449271 | None:intergenic |
| CATCAACTGGGGAAGCAGCA+CGG | 0.549796 | 5.1:+14452626 | MS.gene68360:CDS |
| AGGGGTTTAGCAATGTTGAG+AGG | 0.551883 | 5.1:+14448856 | MS.gene68360:CDS |
| ATTGCTAAACCCCTCAATCT+GGG | 0.551982 | 5.1:-14448847 | None:intergenic |
| AGACATATACCTGTTGGCTG+TGG | 0.558875 | 5.1:-14457477 | None:intergenic |
| GTGGTCTTGATTGAAGAGAC+TGG | 0.561811 | 5.1:-14456541 | None:intergenic |
| AGCAGCCATGGAAAGTGTGA+AGG | 0.566751 | 5.1:+14452654 | MS.gene68360:CDS |
| TCAAGATCTTCAATCTGCCA+TGG | 0.567592 | 5.1:+14455833 | MS.gene68360:CDS |
| AGTTGAATCCAATTTATGCA+AGG | 0.567595 | 5.1:-14456884 | None:intergenic |
| TGAACGCCGTAAATCCTCAA+TGG | 0.567971 | 5.1:-14451153 | None:intergenic |
| AACAAGAGTTAGAGCGAACA+AGG | 0.568118 | 5.1:+14449819 | MS.gene68360:CDS |
| ACCTAAAAGAGAAAGAGGAA+TGG | 0.568959 | 5.1:+14456097 | MS.gene68360:CDS |
| AGATGGAGGCAGCATCAACT+GGG | 0.573919 | 5.1:+14452614 | MS.gene68360:CDS |
| ATTTGATGTTCGGCATCTGA+GGG | 0.574149 | 5.1:-14456916 | None:intergenic |
| ACATGCACTTCTTCAAAAGA+AGG | 0.575291 | 5.1:+14455616 | MS.gene68360:CDS |
| TATGAGAGATGCTGAACTGT+TGG | 0.575729 | 5.1:+14453899 | MS.gene68360:CDS |
| TGCAGATCAGCAGTCTTGAG+AGG | 0.575989 | 5.1:+14455567 | MS.gene68360:intron |
| ACGAGAAAGAACTTGCAGAA+AGG | 0.576540 | 5.1:+14455862 | MS.gene68360:CDS |
| ATCTAGAATTGCAGAGATGG+AGG | 0.576609 | 5.1:+14452600 | MS.gene68360:CDS |
| AAAGTCCGAGCTTCGCAACA+TGG | 0.577308 | 5.1:+14457876 | MS.gene68360:CDS |
| GCAGCCATGGAAAGTGTGAA+GGG | 0.580624 | 5.1:+14452655 | MS.gene68360:CDS |
| AAGTCGATGGCATCTGGTGA+AGG | 0.582381 | 5.1:+14448285 | MS.gene68360:CDS |
| TTCAAAATGTAGAAGAAACA+TGG | 0.582714 | 5.1:+14456130 | MS.gene68360:CDS |
| TCTATCAGCAAGATCATGAA+AGG | 0.585507 | 5.1:-14456459 | None:intergenic |
| GACTGATACTGGTGGAACGA+TGG | 0.588028 | 5.1:+14448542 | MS.gene68360:CDS |
| GAAAGATCAAAGAAAAGGGA+AGG | 0.590834 | 5.1:+14457898 | MS.gene68360:CDS |
| TCTTGAAATCCCAGATTGAG+GGG | 0.593814 | 5.1:+14448838 | MS.gene68360:CDS |
| GCAGATCAGCAGTCTTGAGA+GGG | 0.593969 | 5.1:+14455568 | MS.gene68360:intron |
| ACAGAAAGAAGTTAGTGGTA+CGG | 0.596256 | 5.1:+14448890 | MS.gene68360:CDS |
| GGCTGATACTGGTGGAACGA+TGG | 0.598449 | 5.1:+14448626 | MS.gene68360:CDS |
| TGGCTAGACAACAAGCCCAA+AGG | 0.600900 | 5.1:+14457283 | MS.gene68360:CDS |
| TGATATGAACCAGCAAAGGA+AGG | 0.603160 | 5.1:+14448377 | MS.gene68360:CDS |
| GAGTCGCTTGCAGGACTCGG+TGG | 0.603972 | 5.1:-14458747 | None:intergenic |
| GCCAGGTCAGCTTGAATCGG+AGG | 0.605175 | 5.1:+14453851 | MS.gene68360:intron |
| CAAAATGATAATTATAACAC+AGG | 0.605324 | 5.1:+14456698 | MS.gene68360:CDS |
| ACAGTTCCACCAGTATCAGC+CGG | 0.609423 | 5.1:-14448456 | None:intergenic |
| AAATGAGGCGTTGAAAGCCA+TGG | 0.618853 | 5.1:+14449850 | MS.gene68360:CDS |
| AGTCGCTTGCAGGACTCGGT+GGG | 0.620079 | 5.1:-14458746 | None:intergenic |
| GTTCAGCATCTCTCATACTG+AGG | 0.620292 | 5.1:-14453893 | None:intergenic |
| ATTCTGATATGAACCAGCAA+AGG | 0.620546 | 5.1:+14448373 | MS.gene68360:CDS |
| GAAGTTCTGGCTGATACTGG+TGG | 0.621730 | 5.1:+14448618 | MS.gene68360:CDS |
| ACTGTTGGCTGCCAAAGAAG+AGG | 0.621928 | 5.1:+14453914 | MS.gene68360:CDS |
| TTCATTGCAACCTAAAGAGG+AGG | 0.621987 | 5.1:+14451172 | MS.gene68360:CDS |
| GAAGGTCCGGCTGATACTGG+TGG | 0.623619 | 5.1:+14448450 | MS.gene68360:CDS |
| GGCTGATACTGGTGGAACTG+TGG | 0.625396 | 5.1:+14448458 | MS.gene68360:CDS |
| GCTGCTTCAGTTTAGTCCAG+AGG | 0.627685 | 5.1:+14458120 | MS.gene68360:CDS |
| ATCGTTCCACCAGTATCAGT+CGG | 0.628423 | 5.1:-14448540 | None:intergenic |
| TCTTGCTGATAGAATGATTG+AGG | 0.629183 | 5.1:+14456469 | MS.gene68360:CDS |
| CAGCCATGGAAAGTGTGAAG+GGG | 0.629398 | 5.1:+14452656 | MS.gene68360:CDS |
| AGGATTGCTTCGAACTGCCG+AGG | 0.631572 | 5.1:+14451626 | MS.gene68360:CDS |
| GTACTCAGATGCAGAAGCAA+AGG | 0.633740 | 5.1:+14449037 | MS.gene68360:CDS |
| TGCTGCAGAAGATATGCAGA+AGG | 0.633937 | 5.1:+14456280 | MS.gene68360:CDS |
| AGAATCTTGAGAAAAGAGAG+AGG | 0.634025 | 5.1:-14458782 | None:intergenic |
| TCAATGATGCTGTATCCGAT+AGG | 0.635857 | 5.1:+14451916 | MS.gene68360:CDS |
| TGAACAACTCAAAGCTCTTG+AGG | 0.642235 | 5.1:+14455667 | MS.gene68360:CDS |
| GCTTCAGTTTAGTCCAGAGG+AGG | 0.643537 | 5.1:+14458123 | MS.gene68360:CDS |
| CAGACTTCGAGATACCATTG+AGG | 0.644254 | 5.1:+14451139 | MS.gene68360:intron |
| AGCCATGGAAAGTGTGAAGG+GGG | 0.645092 | 5.1:+14452657 | MS.gene68360:CDS |
| AGTTAGTGGTACGGAAGACG+GGG | 0.650080 | 5.1:+14448899 | MS.gene68360:CDS |
| TCTGGTGAAGGTGATACTGG+TGG | 0.663250 | 5.1:+14448297 | MS.gene68360:CDS |
| GAGGCGTTGAAAGCCATGGA+TGG | 0.667270 | 5.1:+14449854 | MS.gene68360:CDS |
| ACTTCTTCAAAAGAAGGACG+CGG | 0.670227 | 5.1:+14455622 | MS.gene68360:CDS |
| CATTTGTCAGATGGAAACGA+AGG | 0.675140 | 5.1:+14448516 | MS.gene68360:CDS |
| ACAAGATTCGTCTAAACCCG+AGG | 0.677394 | 5.1:+14448491 | MS.gene68360:CDS |
| GAAGGTCCGACTGATACTGG+TGG | 0.678137 | 5.1:+14448534 | MS.gene68360:CDS |
| ACAACTCAAAGCTCTTGAGG+AGG | 0.681638 | 5.1:+14455670 | MS.gene68360:CDS |
| TAGACAACAAGCCCAAAGGG+AGG | 0.685887 | 5.1:+14457287 | MS.gene68360:CDS |
| GAACTTGGCAGTCAGATGCG+AGG | 0.690916 | 5.1:+14456232 | MS.gene68360:intron |
| ACAAGATTCGTCAAAACCTG+AGG | 0.691768 | 5.1:+14448659 | MS.gene68360:CDS |
| ACAAGATTCATGTAAACCAG+AGG | 0.708170 | 5.1:+14448575 | MS.gene68360:CDS |
| CAGATGCTGGAAGATATGAG+AGG | 0.711762 | 5.1:+14451606 | MS.gene68360:intron |
| CTAAAAGAGAAAGAGGAATG+GGG | 0.715540 | 5.1:+14456099 | MS.gene68360:CDS |
| GATGGAGGCAGCATCAACTG+GGG | 0.716627 | 5.1:+14452615 | MS.gene68360:CDS |
| AAAAGAAAGGGAAAGCTGGG+AGG | 0.732734 | 5.1:+14453675 | MS.gene68360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 14448261 | 14458815 | 14448261 | ID=MS.gene68360 |
| chr5.1 | mRNA | 14448261 | 14458815 | 14448261 | ID=MS.gene68360.t1;Parent=MS.gene68360 |
| chr5.1 | exon | 14448261 | 14449089 | 14448261 | ID=MS.gene68360.t1.exon1;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14448261 | 14449089 | 14448261 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14449211 | 14449326 | 14449211 | ID=MS.gene68360.t1.exon2;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14449211 | 14449326 | 14449211 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14449740 | 14449909 | 14449740 | ID=MS.gene68360.t1.exon3;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14449740 | 14449909 | 14449740 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14451142 | 14451235 | 14451142 | ID=MS.gene68360.t1.exon4;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14451142 | 14451235 | 14451142 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14451609 | 14451695 | 14451609 | ID=MS.gene68360.t1.exon5;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14451609 | 14451695 | 14451609 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14451891 | 14451971 | 14451891 | ID=MS.gene68360.t1.exon6;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14451891 | 14451971 | 14451891 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14452580 | 14452705 | 14452580 | ID=MS.gene68360.t1.exon7;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14452580 | 14452705 | 14452580 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14453673 | 14453781 | 14453673 | ID=MS.gene68360.t1.exon8;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14453673 | 14453781 | 14453673 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14453856 | 14453935 | 14453856 | ID=MS.gene68360.t1.exon9;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14453856 | 14453935 | 14453856 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14455572 | 14455700 | 14455572 | ID=MS.gene68360.t1.exon10;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14455572 | 14455700 | 14455572 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14455783 | 14455883 | 14455783 | ID=MS.gene68360.t1.exon11;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14455783 | 14455883 | 14455783 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14456023 | 14456156 | 14456023 | ID=MS.gene68360.t1.exon12;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14456023 | 14456156 | 14456023 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14456243 | 14456340 | 14456243 | ID=MS.gene68360.t1.exon13;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14456243 | 14456340 | 14456243 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14456446 | 14456565 | 14456446 | ID=MS.gene68360.t1.exon14;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14456446 | 14456565 | 14456446 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14456692 | 14456719 | 14456692 | ID=MS.gene68360.t1.exon15;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14456692 | 14456719 | 14456692 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14456884 | 14456942 | 14456884 | ID=MS.gene68360.t1.exon16;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14456884 | 14456942 | 14456884 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14457279 | 14457350 | 14457279 | ID=MS.gene68360.t1.exon17;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14457279 | 14457350 | 14457279 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14457442 | 14457489 | 14457442 | ID=MS.gene68360.t1.exon18;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14457442 | 14457489 | 14457442 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14457865 | 14457970 | 14457865 | ID=MS.gene68360.t1.exon19;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14457865 | 14457970 | 14457865 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14458086 | 14458144 | 14458086 | ID=MS.gene68360.t1.exon20;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14458086 | 14458144 | 14458086 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| chr5.1 | exon | 14458702 | 14458815 | 14458702 | ID=MS.gene68360.t1.exon21;Parent=MS.gene68360.t1 |
| chr5.1 | CDS | 14458702 | 14458815 | 14458702 | ID=cds.MS.gene68360.t1;Parent=MS.gene68360.t1 |
| Gene Sequence |
| Protein sequence |
