Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68751.t1 | XP_003604031.1 | 91 | 312 | 14 | 1 | 1 | 312 | 1 | 298 | 2.40E-153 | 551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68751.t1 | G7J8H3 | 91.0 | 312 | 14 | 1 | 1 | 312 | 1 | 298 | 1.7e-153 | 551.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene68751 | 0.824468 | 7.94E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene68751 | 0.815773 | 7.79E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene68751 | 0.885669 | 6.66E-72 | -1.69E-46 |
| MS.gene050301 | MS.gene68751 | 0.807009 | 6.23E-50 | -1.69E-46 |
| MS.gene050581 | MS.gene68751 | 0.804242 | 2.37E-49 | -1.69E-46 |
| MS.gene050685 | MS.gene68751 | 0.823021 | 1.73E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene68751 | 0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene051471 | MS.gene68751 | 0.800868 | 1.18E-48 | -1.69E-46 |
| MS.gene052078 | MS.gene68751 | 0.81926 | 1.28E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene68751 | 0.864576 | 1.10E-64 | -1.69E-46 |
| MS.gene052326 | MS.gene68751 | 0.810925 | 9.05E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene68751 | 0.801094 | 1.06E-48 | -1.69E-46 |
| MS.gene054214 | MS.gene68751 | 0.838325 | 3.08E-57 | -1.69E-46 |
| MS.gene055207 | MS.gene68751 | 0.806987 | 6.30E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene68751 | 0.815999 | 6.93E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene68751 | 0.814942 | 1.19E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene68751 | 0.805648 | 1.21E-49 | -1.69E-46 |
| MS.gene058903 | MS.gene68751 | 0.823576 | 1.29E-53 | -1.69E-46 |
| MS.gene059228 | MS.gene68751 | 0.878831 | 2.04E-69 | -1.69E-46 |
| MS.gene059294 | MS.gene68751 | 0.810097 | 1.37E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene68751 | 0.817174 | 3.78E-52 | -1.69E-46 |
| MS.gene059974 | MS.gene68751 | 0.853857 | 1.81E-61 | -1.69E-46 |
| MS.gene060005 | MS.gene68751 | 0.898138 | 7.11E-77 | -1.69E-46 |
| MS.gene06037 | MS.gene68751 | 0.82047 | 6.75E-53 | -1.69E-46 |
| MS.gene060799 | MS.gene68751 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene68751 | 0.842359 | 2.71E-58 | -1.69E-46 |
| MS.gene060801 | MS.gene68751 | 0.809785 | 1.59E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene68751 | 0.810222 | 1.28E-50 | -1.69E-46 |
| MS.gene061112 | MS.gene68751 | 0.880509 | 5.18E-70 | -1.69E-46 |
| MS.gene061113 | MS.gene68751 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene68751 | 0.877972 | 4.09E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68751.t1 | MTR_3g117760 | 91.667 | 312 | 12 | 2 | 1 | 312 | 1 | 298 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68751.t1 | AT2G16630 | 46.348 | 356 | 136 | 6 | 7 | 312 | 9 | 359 | 1.42e-100 | 300 |
Find 87 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGATCTCCTCTCCCTTTC+AGG | 0.175349 | 3.2:-92964013 | None:intergenic |
| GGTGCCAATGTTGGTGGTGG+TGG | 0.190043 | 3.2:-92963048 | None:intergenic |
| ATGGTGGAAGTTGTGGCATT+GGG | 0.241279 | 3.2:-92963107 | None:intergenic |
| GATGGACATGCTGAAGCTTC+TGG | 0.264920 | 3.2:-92963147 | None:intergenic |
| AATGTTGGTGGTGGTGGGGA+TGG | 0.300659 | 3.2:-92963042 | None:intergenic |
| ACAAAAGTAGCTGTAGCTTT+TGG | 0.304044 | 3.2:+92963942 | MS.gene68751:CDS |
| CATTTCATGAGGGCTAATTC+TGG | 0.314423 | 3.2:+92964179 | MS.gene68751:CDS |
| AAGGGAGAGGAGATCCTTAC+AGG | 0.324413 | 3.2:+92964018 | MS.gene68751:CDS |
| ACACATGAATTATGCTTTGA+TGG | 0.330439 | 3.2:+92964124 | MS.gene68751:CDS |
| CAAGAGAAGAAACAACAAAT+TGG | 0.341479 | 3.2:+92962788 | MS.gene68751:CDS |
| GTGCCAATGTTGGTGGTGGT+GGG | 0.345243 | 3.2:-92963047 | None:intergenic |
| CTCCAATAGCATTCATATTC+CGG | 0.351920 | 3.2:-92963903 | None:intergenic |
| AAAATCCAAGACTCATGTTT+AGG | 0.352973 | 3.2:+92962935 | MS.gene68751:CDS |
| TCTAACATTCATGGAGTTGC+CGG | 0.354500 | 3.2:+92961328 | None:intergenic |
| ATTCTTTCAGTGGCCATTGA+TGG | 0.372198 | 3.2:+92961377 | MS.gene68751:CDS |
| ATGTTGGTGGTGGTGGGGAT+GGG | 0.374966 | 3.2:-92963041 | None:intergenic |
| GAAGAAACAACAAATTGGTT+TGG | 0.375618 | 3.2:+92962793 | MS.gene68751:CDS |
| CAAGTGGATGGTAAGAGAAT+TGG | 0.385574 | 3.2:-92964091 | None:intergenic |
| AATGGTGGAAGTTGTGGCAT+TGG | 0.390842 | 3.2:-92963108 | None:intergenic |
| AGTTAGATCTCACCATTAAC+AGG | 0.396284 | 3.2:-92961479 | None:intergenic |
| TGCCGGAATATGAATGCTAT+TGG | 0.408426 | 3.2:+92963901 | MS.gene68751:CDS |
| ATCTGCCTTTGTTCCATCAA+TGG | 0.412809 | 3.2:-92961390 | None:intergenic |
| CATGTCTCGGGAAATAATAA+TGG | 0.419703 | 3.2:+92962868 | MS.gene68751:CDS |
| ATGGTTGCAGCAAGGAAATA+TGG | 0.433099 | 3.2:+92963966 | MS.gene68751:CDS |
| AGCTATACAATGAGGTTTGA+TGG | 0.433754 | 3.2:+92962817 | MS.gene68751:CDS |
| TGGTGGTGGTGGGGATGGGT+TGG | 0.440191 | 3.2:-92963037 | None:intergenic |
| ATGTGGAGGAGGAGAAGAAA+TGG | 0.446281 | 3.2:-92963073 | None:intergenic |
| TGCCAATGTTGGTGGTGGTG+GGG | 0.465868 | 3.2:-92963046 | None:intergenic |
| TGGTTGTTCTGCACATGTCT+CGG | 0.469204 | 3.2:+92962855 | MS.gene68751:CDS |
| TTTGATGGAGCACCAGACTT+AGG | 0.482264 | 3.2:+92962832 | MS.gene68751:CDS |
| ATGAGGGCTAATTCTGGTGC+TGG | 0.483178 | 3.2:+92964185 | MS.gene68751:CDS |
| TGCTTTGATGGGCTCAACTA+GGG | 0.485464 | 3.2:+92964136 | MS.gene68751:CDS |
| CAGTATTGCATAGGTTGAGC+AGG | 0.486574 | 3.2:-92963003 | None:intergenic |
| AACATCCTAAACATGAGTCT+TGG | 0.489630 | 3.2:-92962940 | None:intergenic |
| GGTTGTTCTGCACATGTCTC+GGG | 0.491091 | 3.2:+92962856 | MS.gene68751:CDS |
| TGGTGGAAGTTGTGGCATTG+GGG | 0.492351 | 3.2:-92963106 | None:intergenic |
| CACATGAATTATGCTTTGAT+GGG | 0.492608 | 3.2:+92964125 | MS.gene68751:CDS |
| GGTGGTGCCAATGTTGGTGG+TGG | 0.493754 | 3.2:-92963051 | None:intergenic |
| TGTGGAGGAGGAGAAGAAAT+GGG | 0.494289 | 3.2:-92963072 | None:intergenic |
| ATGCTTTGATGGGCTCAACT+AGG | 0.495913 | 3.2:+92964135 | MS.gene68751:CDS |
| GTTGCAAACAAAAGCTTCTC+CGG | 0.497432 | 3.2:-92961347 | None:intergenic |
| ATCCCCACCACCACCAACAT+TGG | 0.499035 | 3.2:+92963044 | MS.gene68751:CDS |
| GCACCTTCACCACAACTCAT+TGG | 0.503873 | 3.2:-92962901 | None:intergenic |
| TGTCATGTAGTGACAACAAT+GGG | 0.513625 | 3.2:+92962752 | MS.gene68751:CDS |
| CATGTTTAGGATGTTTGACA+TGG | 0.532543 | 3.2:+92962948 | MS.gene68751:CDS |
| TCTCTCAAAAGAGTCCTGTA+AGG | 0.534067 | 3.2:-92964032 | None:intergenic |
| GCAGAACAACCACCTAAGTC+TGG | 0.541167 | 3.2:-92962844 | None:intergenic |
| CAATTCTCTTACCATCCACT+TGG | 0.543024 | 3.2:+92964092 | MS.gene68751:CDS |
| CGGAATATGAATGCTATTGG+AGG | 0.544236 | 3.2:+92963904 | MS.gene68751:CDS |
| CAGTGATAAACTTACTGTGA+TGG | 0.555843 | 3.2:-92963165 | None:intergenic |
| TTACTGCTTATCATTTCATG+AGG | 0.557628 | 3.2:+92964168 | MS.gene68751:CDS |
| TAGGTTGAGCAGGCTGAGCA+AGG | 0.559848 | 3.2:-92962993 | None:intergenic |
| ATGAGTTGTGGTGAAGGTGC+TGG | 0.561315 | 3.2:+92962904 | MS.gene68751:CDS |
| TGATAGGAAGTGGACAATGC+CGG | 0.564202 | 3.2:+92963884 | MS.gene68751:intron |
| ATGGGTGGTGCCAATGTTGG+TGG | 0.567999 | 3.2:-92963054 | None:intergenic |
| GATGTTGAGCAGTATTGCAT+AGG | 0.569435 | 3.2:-92963012 | None:intergenic |
| AAAATCATTGGTGGTAATGG+TGG | 0.570401 | 3.2:-92963123 | None:intergenic |
| GGTGGAAGTTGTGGCATTGG+GGG | 0.571199 | 3.2:-92963105 | None:intergenic |
| TTTGTGATCAATGCAAAGAC+GGG | 0.581900 | 3.2:+92961435 | MS.gene68751:CDS |
| GGTAGGTTGAAATGTGGAGG+AGG | 0.582342 | 3.2:-92963084 | None:intergenic |
| GGTGGTAATGGTGGAAGTTG+TGG | 0.582776 | 3.2:-92963114 | None:intergenic |
| ACATTGTGGTATGGCCTGAA+AGG | 0.589527 | 3.2:+92963999 | MS.gene68751:CDS |
| TGGTATGGCCTGAAAGGGAG+AGG | 0.589868 | 3.2:+92964005 | MS.gene68751:CDS |
| TACTGCTTATCATTTCATGA+GGG | 0.598834 | 3.2:+92964169 | MS.gene68751:CDS |
| ATTTGTGATCAATGCAAAGA+CGG | 0.604556 | 3.2:+92961434 | MS.gene68751:CDS |
| TGAGCAGGCTGAGCAAGGAG+TGG | 0.605851 | 3.2:-92962988 | None:intergenic |
| GAAATGGGTGGTGCCAATGT+TGG | 0.606306 | 3.2:-92963057 | None:intergenic |
| GATGGAGCACCAGACTTAGG+TGG | 0.611734 | 3.2:+92962835 | MS.gene68751:CDS |
| CATTGTGGTATGGCCTGAAA+GGG | 0.612379 | 3.2:+92964000 | MS.gene68751:CDS |
| GGACCAATGAGTTGTGGTGA+AGG | 0.613433 | 3.2:+92962898 | MS.gene68751:CDS |
| AGTGGCCATTGATGGAACAA+AGG | 0.622178 | 3.2:+92961385 | MS.gene68751:CDS |
| GGTTTGGAAGCTATACAATG+AGG | 0.622859 | 3.2:+92962809 | MS.gene68751:CDS |
| GAATATGAATGCTATTGGAG+GGG | 0.629266 | 3.2:+92963906 | MS.gene68751:CDS |
| GGAAATAATAATGGACAAGG+AGG | 0.636968 | 3.2:+92962877 | MS.gene68751:CDS |
| CTGTCATGTAGTGACAACAA+TGG | 0.641151 | 3.2:+92962751 | MS.gene68751:CDS |
| TCGGGAAATAATAATGGACA+AGG | 0.644592 | 3.2:+92962874 | MS.gene68751:CDS |
| AAGGCAGATACTATGCTCAC+CGG | 0.644788 | 3.2:+92961404 | MS.gene68751:CDS |
| TTGATCACAAATGACAGTGC+CGG | 0.647531 | 3.2:-92961423 | None:intergenic |
| ACAGACATGACATTGTGGTA+TGG | 0.658654 | 3.2:+92963990 | MS.gene68751:CDS |
| GGAATATGAATGCTATTGGA+GGG | 0.672296 | 3.2:+92963905 | MS.gene68751:CDS |
| CAAGGAGGACCAATGAGTTG+TGG | 0.682632 | 3.2:+92962892 | MS.gene68751:CDS |
| ATGTGTGTGACTACACCAAG+TGG | 0.706120 | 3.2:-92964107 | None:intergenic |
| GGAGGAGGAGAAGAAATGGG+TGG | 0.708291 | 3.2:-92963069 | None:intergenic |
| GTGTGACTACACCAAGTGGA+TGG | 0.711817 | 3.2:-92964103 | None:intergenic |
| TGACATGGAGATGTATGCTG+TGG | 0.712430 | 3.2:+92962963 | MS.gene68751:CDS |
| TGAAATGATAAGCAGTAACG+AGG | 0.716584 | 3.2:-92964163 | None:intergenic |
| ATGGTACAGACATGACATTG+TGG | 0.735250 | 3.2:+92963985 | MS.gene68751:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTTAAACTTATTATTATT+TGG | - | chr3.2:92963549-92963568 | None:intergenic | 10.0% |
| !! | TTCAATAAATACAATTAATT+TGG | + | chr3.2:92962648-92962667 | MS.gene68751:intron | 10.0% |
| !! | TTGTAAATTATTATTATAAC+CGG | + | chr3.2:92963790-92963809 | MS.gene68751:intron | 10.0% |
| !!! | TATTTTCAACTAATTTTTTT+TGG | - | chr3.2:92963606-92963625 | None:intergenic | 10.0% |
| !! | AATAATAAGTTTAAAGACTT+TGG | + | chr3.2:92963552-92963571 | MS.gene68751:intron | 15.0% |
| !! | TGAAATCTTATTATCATTAA+TGG | - | chr3.2:92963207-92963226 | None:intergenic | 15.0% |
| !! | TGTAAAATTACTAAAAGAAA+TGG | + | chr3.2:92963334-92963353 | MS.gene68751:intron | 15.0% |
| !! | TTTCAAATAAAAACTCATAA+TGG | - | chr3.2:92962037-92962056 | None:intergenic | 15.0% |
| !!! | AAGGTTTTTTTTTTCTTTTA+CGG | - | chr3.2:92962446-92962465 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTTTTTTCTTTT+TGG | - | chr3.2:92961791-92961810 | None:intergenic | 15.0% |
| !!! | TACTCAAAAAATGTATTTTT+AGG | - | chr3.2:92963524-92963543 | None:intergenic | 15.0% |
| !!! | TATGAGTTTTTATTTGAAAT+AGG | + | chr3.2:92962038-92962057 | MS.gene68751:intron | 15.0% |
| !! | AAATAAGCAAAATAAGCATT+GGG | + | chr3.2:92962244-92962263 | MS.gene68751:intron | 20.0% |
| !! | ATGAAAGATGAATAAATATC+CGG | - | chr3.2:92963812-92963831 | None:intergenic | 20.0% |
| !! | TCAGTTCTATATTAGTAATT+AGG | + | chr3.2:92962345-92962364 | MS.gene68751:intron | 20.0% |
| !! | TTAAATGCACAAAATTTAAG+AGG | + | chr3.2:92962159-92962178 | MS.gene68751:intron | 20.0% |
| !!! | AAATGGTTATTATGTGTTTT+TGG | - | chr3.2:92961592-92961611 | None:intergenic | 20.0% |
| !!! | AAATTGTACTATTTGTTAAG+TGG | - | chr3.2:92962313-92962332 | None:intergenic | 20.0% |
| !!! | AACATTTTTAATTCTTTCAG+TGG | + | chr3.2:92961367-92961386 | MS.gene68751:CDS | 20.0% |
| !!! | AAGAGGATGTTTTTATTTTT+GGG | + | chr3.2:92962176-92962195 | MS.gene68751:intron | 20.0% |
| !!! | AATGTTAACCTGTATTTTTA+AGG | + | chr3.2:92962063-92962082 | MS.gene68751:intron | 20.0% |
| !!! | ACAATTTAGTTTTTTCAATG+CGG | + | chr3.2:92961933-92961952 | MS.gene68751:intron | 20.0% |
| !!! | ATATGTTTTTAATTGTGACA+TGG | + | chr3.2:92962276-92962295 | MS.gene68751:intron | 20.0% |
| !!! | GGTAAAAATTTGAGTTTAAA+AGG | + | chr3.2:92963573-92963592 | MS.gene68751:intron | 20.0% |
| !!! | GTTTTGAAAATAGTAGAATA+TGG | + | chr3.2:92963435-92963454 | MS.gene68751:intron | 20.0% |
| !!! | TAAGAGGATGTTTTTATTTT+TGG | + | chr3.2:92962175-92962194 | MS.gene68751:intron | 20.0% |
| !!! | TGTAAAGTATTTGATTTGAT+AGG | + | chr3.2:92963868-92963887 | MS.gene68751:intron | 20.0% |
| ! | GAAATAAGCAAAATAAGCAT+TGG | + | chr3.2:92962243-92962262 | MS.gene68751:intron | 25.0% |
| ! | GTCAATAAAATCTATGACAT+AGG | - | chr3.2:92962703-92962722 | None:intergenic | 25.0% |
| ! | TGAGTTTATGAACTATCTTA+CGG | - | chr3.2:92961874-92961893 | None:intergenic | 25.0% |
| ! | TTATTGACCAAATTTAATGC+AGG | + | chr3.2:92962715-92962734 | MS.gene68751:intron | 25.0% |
| ! | TTTCCTTTCCATAAACTAAA+TGG | - | chr3.2:92961979-92961998 | None:intergenic | 25.0% |
| !! | AAATTTGAGTTTAAAAGGCT+AGG | + | chr3.2:92963578-92963597 | MS.gene68751:intron | 25.0% |
| !! | ATACTATTTTCACTAAGAGT+CGG | + | chr3.2:92963241-92963260 | MS.gene68751:intron | 25.0% |
| !! | TAATGGTTCCATTTAGTTTA+TGG | + | chr3.2:92961968-92961987 | MS.gene68751:intron | 25.0% |
| !!! | ACTAATATAGAACTGACTTT+TGG | - | chr3.2:92962341-92962360 | None:intergenic | 25.0% |
| AAAAAAGTCTAACACTGTTC+AGG | + | chr3.2:92963657-92963676 | MS.gene68751:intron | 30.0% | |
| AAAATCCAAGACTCATGTTT+AGG | + | chr3.2:92962935-92962954 | MS.gene68751:CDS | 30.0% | |
| AAATGCATGGTACTAATAGA+TGG | - | chr3.2:92961557-92961576 | None:intergenic | 30.0% | |
| AACTTGTGCCTTAAAAATAC+AGG | - | chr3.2:92962074-92962093 | None:intergenic | 30.0% | |
| ACACATGAATTATGCTTTGA+TGG | + | chr3.2:92964124-92964143 | MS.gene68751:CDS | 30.0% | |
| ACTATGATAGAGGTTCAATT+TGG | - | chr3.2:92961684-92961703 | None:intergenic | 30.0% | |
| AGTAGAATATGGTGATCTAT+GGG | + | chr3.2:92963446-92963465 | MS.gene68751:intron | 30.0% | |
| ATACACAACAACAACAACAA+AGG | - | chr3.2:92962465-92962484 | None:intergenic | 30.0% | |
| ATGCAGGAGAAAAACTAAAA+TGG | - | chr3.2:92961609-92961628 | None:intergenic | 30.0% | |
| ATTGAACCTCTATCATAGTT+TGG | + | chr3.2:92961685-92961704 | MS.gene68751:intron | 30.0% | |
| ATTTGTGATCAATGCAAAGA+CGG | + | chr3.2:92961434-92961453 | MS.gene68751:CDS | 30.0% | |
| CAAATGGCAAGAACTATTAA+CGG | - | chr3.2:92961731-92961750 | None:intergenic | 30.0% | |
| CAAGAGAAGAAACAACAAAT+TGG | + | chr3.2:92962788-92962807 | MS.gene68751:CDS | 30.0% | |
| CACATGAATTATGCTTTGAT+GGG | + | chr3.2:92964125-92964144 | MS.gene68751:CDS | 30.0% | |
| GAACGTTTAACTAAAATGCA+TGG | - | chr3.2:92961570-92961589 | None:intergenic | 30.0% | |
| GAAGAAACAACAAATTGGTT+TGG | + | chr3.2:92962793-92962812 | MS.gene68751:CDS | 30.0% | |
| GAGTTTATGAACTATCTTAC+GGG | - | chr3.2:92961873-92961892 | None:intergenic | 30.0% | |
| TACTGCTTATCATTTCATGA+GGG | + | chr3.2:92964169-92964188 | MS.gene68751:CDS | 30.0% | |
| TAGTAGAATATGGTGATCTA+TGG | + | chr3.2:92963445-92963464 | MS.gene68751:intron | 30.0% | |
| TCAAAAAGAAGTTCAACAGT+TGG | + | chr3.2:92962396-92962415 | MS.gene68751:intron | 30.0% | |
| TTACTGCTTATCATTTCATG+AGG | + | chr3.2:92964168-92964187 | MS.gene68751:CDS | 30.0% | |
| TTTCAGCTAAGACAAAACAA+AGG | - | chr3.2:92962585-92962604 | None:intergenic | 30.0% | |
| ! | AATTTTTCATTGCCTCTAGT+TGG | + | chr3.2:92962603-92962622 | MS.gene68751:intron | 30.0% |
| ! | ATTTTTCATTGCCTCTAGTT+GGG | + | chr3.2:92962604-92962623 | MS.gene68751:intron | 30.0% |
| ! | CTTTTCGATTATCCTGTTAA+TGG | + | chr3.2:92961467-92961486 | MS.gene68751:CDS | 30.0% |
| ! | GTTCCATTTAGTTTATGGAA+AGG | + | chr3.2:92961973-92961992 | MS.gene68751:intron | 30.0% |
| ! | TTTTGCACCTGCATTAAATT+TGG | - | chr3.2:92962725-92962744 | None:intergenic | 30.0% |
| !! | GTATTTGATTTGATAGGAAG+TGG | + | chr3.2:92963874-92963893 | MS.gene68751:intron | 30.0% |
| !!! | TGCGGTTCATTTTGATTTAA+TGG | + | chr3.2:92961951-92961970 | MS.gene68751:intron | 30.0% |
| AACATCCTAAACATGAGTCT+TGG | - | chr3.2:92962943-92962962 | None:intergenic | 35.0% | |
| ACCATACCAAACTATGATAG+AGG | - | chr3.2:92961694-92961713 | None:intergenic | 35.0% | |
| ACCTCTATCATAGTTTGGTA+TGG | + | chr3.2:92961690-92961709 | MS.gene68751:intron | 35.0% | |
| AGCTATACAATGAGGTTTGA+TGG | + | chr3.2:92962817-92962836 | MS.gene68751:CDS | 35.0% | |
| AGTTAGATCTCACCATTAAC+AGG | - | chr3.2:92961482-92961501 | None:intergenic | 35.0% | |
| CAGTGATAAACTTACTGTGA+TGG | - | chr3.2:92963168-92963187 | None:intergenic | 35.0% | |
| CATGTCTCGGGAAATAATAA+TGG | + | chr3.2:92962868-92962887 | MS.gene68751:CDS | 35.0% | |
| CTCCAATAGCATTCATATTC+CGG | - | chr3.2:92963906-92963925 | None:intergenic | 35.0% | |
| GAATATGAATGCTATTGGAG+GGG | + | chr3.2:92963906-92963925 | MS.gene68751:CDS | 35.0% | |
| GACTGTAACTGTTTATGGTT+TGG | + | chr3.2:92961639-92961658 | MS.gene68751:intron | 35.0% | |
| GATAGAGGTTCAATTTGGTT+CGG | - | chr3.2:92961679-92961698 | None:intergenic | 35.0% | |
| GATAGGACTGTAACTGTTTA+TGG | + | chr3.2:92961634-92961653 | MS.gene68751:intron | 35.0% | |
| GGAAAGGAAACATGAAAAGT+GGG | + | chr3.2:92961989-92962008 | MS.gene68751:intron | 35.0% | |
| GGAATATGAATGCTATTGGA+GGG | + | chr3.2:92963905-92963924 | MS.gene68751:CDS | 35.0% | |
| TATGCTAACTTATGCCCTAA+AGG | - | chr3.2:92962216-92962235 | None:intergenic | 35.0% | |
| TCACATGTTGTGACTTTGTA+AGG | + | chr3.2:92962515-92962534 | MS.gene68751:intron | 35.0% | |
| TGAAATGATAAGCAGTAACG+AGG | - | chr3.2:92964166-92964185 | None:intergenic | 35.0% | |
| TGGAAAGGAAACATGAAAAG+TGG | + | chr3.2:92961988-92962007 | MS.gene68751:intron | 35.0% | |
| TGTCATGTAGTGACAACAAT+GGG | + | chr3.2:92962752-92962771 | MS.gene68751:CDS | 35.0% | |
| TTGCTTAACATGTGCCTTTA+GGG | + | chr3.2:92962199-92962218 | MS.gene68751:intron | 35.0% | |
| TTTGTGATCAATGCAAAGAC+GGG | + | chr3.2:92961435-92961454 | MS.gene68751:CDS | 35.0% | |
| ! | ACAAAAGTAGCTGTAGCTTT+TGG | + | chr3.2:92963942-92963961 | MS.gene68751:CDS | 35.0% |
| ! | CATGTTTAGGATGTTTGACA+TGG | + | chr3.2:92962948-92962967 | MS.gene68751:CDS | 35.0% |
| ! | GAAGCTTCTGGAAAAATCAT+TGG | - | chr3.2:92963138-92963157 | None:intergenic | 35.0% |
| ! | GGAAAAATCATTGGTGGTAA+TGG | - | chr3.2:92963129-92963148 | None:intergenic | 35.0% |
| ! | TTTCTCCTGCATTGATAGAT+AGG | + | chr3.2:92961617-92961636 | MS.gene68751:intron | 35.0% |
| !! | AAAATCATTGGTGGTAATGG+TGG | - | chr3.2:92963126-92963145 | None:intergenic | 35.0% |
| !! | GGAAATAATAATGGACAAGG+AGG | + | chr3.2:92962877-92962896 | MS.gene68751:CDS | 35.0% |
| !! | TAAGCAAAATAAGCATTGGG+TGG | + | chr3.2:92962247-92962266 | MS.gene68751:intron | 35.0% |
| !! | TCGGGAAATAATAATGGACA+AGG | + | chr3.2:92962874-92962893 | MS.gene68751:CDS | 35.0% |
| !!! | TAGACTAATACTTTTTCGCC+TGG | + | chr3.2:92962492-92962511 | MS.gene68751:intron | 35.0% |
| ACAAAACTCTTGCGATTGAC+CGG | - | chr3.2:92961759-92961778 | None:intergenic | 40.0% | |
| ACAGACATGACATTGTGGTA+TGG | + | chr3.2:92963990-92964009 | MS.gene68751:CDS | 40.0% | |
| ACAGTCCTATCTATCAATGC+AGG | - | chr3.2:92961625-92961644 | None:intergenic | 40.0% | |
| ACCCTAACTAAAACAGGAGA+GGG | - | chr3.2:92962560-92962579 | None:intergenic | 40.0% | |
| ATCTGCCTTTGTTCCATCAA+TGG | - | chr3.2:92961393-92961412 | None:intergenic | 40.0% | |
| ATGGTACAGACATGACATTG+TGG | + | chr3.2:92963985-92964004 | MS.gene68751:CDS | 40.0% | |
| ATGGTTGCAGCAAGGAAATA+TGG | + | chr3.2:92963966-92963985 | MS.gene68751:CDS | 40.0% | |
| ATTCTTTCAGTGGCCATTGA+TGG | + | chr3.2:92961377-92961396 | MS.gene68751:CDS | 40.0% | |
| CAAGTGGATGGTAAGAGAAT+TGG | - | chr3.2:92964094-92964113 | None:intergenic | 40.0% | |
| CAATTCTCTTACCATCCACT+TGG | + | chr3.2:92964092-92964111 | MS.gene68751:CDS | 40.0% | |
| CATTTCATGAGGGCTAATTC+TGG | + | chr3.2:92964179-92964198 | MS.gene68751:CDS | 40.0% | |
| CGGAATATGAATGCTATTGG+AGG | + | chr3.2:92963904-92963923 | MS.gene68751:CDS | 40.0% | |
| CTGTCATGTAGTGACAACAA+TGG | + | chr3.2:92962751-92962770 | MS.gene68751:CDS | 40.0% | |
| GATGTTGAGCAGTATTGCAT+AGG | - | chr3.2:92963015-92963034 | None:intergenic | 40.0% | |
| GGAAACATGAAAAGTGGGAA+AGG | + | chr3.2:92961994-92962013 | MS.gene68751:intron | 40.0% | |
| GGTTTGGAAGCTATACAATG+AGG | + | chr3.2:92962809-92962828 | MS.gene68751:CDS | 40.0% | |
| GTTCATAAACTCAACCAACC+TGG | + | chr3.2:92961881-92961900 | MS.gene68751:intron | 40.0% | |
| GTTGCAAACAAAAGCTTCTC+CGG | - | chr3.2:92961350-92961369 | None:intergenic | 40.0% | |
| GTTGCTTAACATGTGCCTTT+AGG | + | chr3.2:92962198-92962217 | MS.gene68751:intron | 40.0% | |
| TCTCTCAAAAGAGTCCTGTA+AGG | - | chr3.2:92964035-92964054 | None:intergenic | 40.0% | |
| TGCCGGAATATGAATGCTAT+TGG | + | chr3.2:92963901-92963920 | MS.gene68751:CDS | 40.0% | |
| TGGCGAACAAATGAAAACAG+AGG | + | chr3.2:92963480-92963499 | MS.gene68751:intron | 40.0% | |
| TTGATCACAAATGACAGTGC+CGG | - | chr3.2:92961426-92961445 | None:intergenic | 40.0% | |
| ! | AACTGTTTATGGTTTGGCTC+AGG | + | chr3.2:92961645-92961664 | MS.gene68751:intron | 40.0% |
| ! | ACTGTTTATGGTTTGGCTCA+GGG | + | chr3.2:92961646-92961665 | MS.gene68751:intron | 40.0% |
| ! | ATGAGTCTTGGATTTTGAGC+AGG | - | chr3.2:92962931-92962950 | None:intergenic | 40.0% |
| ! | GCTTCTGGAAAAATCATTGG+TGG | - | chr3.2:92963135-92963154 | None:intergenic | 40.0% |
| !! | ACAGGACTCTTTTGAGAGAA+GGG | + | chr3.2:92964036-92964055 | MS.gene68751:CDS | 40.0% |
| !! | AGTAGCTGTAGCTTTTGGAA+TGG | + | chr3.2:92963947-92963966 | MS.gene68751:CDS | 40.0% |
| !! | TACAGGACTCTTTTGAGAGA+AGG | + | chr3.2:92964035-92964054 | MS.gene68751:CDS | 40.0% |
| AAAAGAAACACGCGCCAGAT+AGG | + | chr3.2:92963704-92963723 | MS.gene68751:intron | 45.0% | |
| AAAGAAACACGCGCCAGATA+GGG | + | chr3.2:92963705-92963724 | MS.gene68751:intron | 45.0% | |
| AAGGCAGATACTATGCTCAC+CGG | + | chr3.2:92961404-92961423 | MS.gene68751:CDS | 45.0% | |
| AAGGCCACCCTAACTAAAAC+AGG | - | chr3.2:92962566-92962585 | None:intergenic | 45.0% | |
| ACATTGTGGTATGGCCTGAA+AGG | + | chr3.2:92963999-92964018 | MS.gene68751:CDS | 45.0% | |
| AGCATTTCACGAACTCAACC+AGG | - | chr3.2:92961902-92961921 | None:intergenic | 45.0% | |
| AGTGGCCATTGATGGAACAA+AGG | + | chr3.2:92961385-92961404 | MS.gene68751:CDS | 45.0% | |
| ATGTGGAGGAGGAGAAGAAA+TGG | - | chr3.2:92963076-92963095 | None:intergenic | 45.0% | |
| ATGTGTGTGACTACACCAAG+TGG | - | chr3.2:92964110-92964129 | None:intergenic | 45.0% | |
| CAAAGTCACAACATGTGACC+AGG | - | chr3.2:92962513-92962532 | None:intergenic | 45.0% | |
| CACCCTAACTAAAACAGGAG+AGG | - | chr3.2:92962561-92962580 | None:intergenic | 45.0% | |
| CATTGTGGTATGGCCTGAAA+GGG | + | chr3.2:92964000-92964019 | MS.gene68751:CDS | 45.0% | |
| CCAACACATTAGGAGGTCTA+GGG | + | chr3.2:92963265-92963284 | MS.gene68751:intron | 45.0% | |
| CCCTAACTAAAACAGGAGAG+GGG | - | chr3.2:92962559-92962578 | None:intergenic | 45.0% | |
| CCTAACTAAAACAGGAGAGG+GGG | - | chr3.2:92962558-92962577 | None:intergenic | 45.0% | |
| CCTAGACCTCCTAATGTGTT+GGG | - | chr3.2:92963267-92963286 | None:intergenic | 45.0% | |
| GGTGATCTATGGGTACTACA+CGG | + | chr3.2:92963456-92963475 | MS.gene68751:intron | 45.0% | |
| GTGATCTATGGGTACTACAC+GGG | + | chr3.2:92963457-92963476 | MS.gene68751:intron | 45.0% | |
| TGACATGGAGATGTATGCTG+TGG | + | chr3.2:92962963-92962982 | MS.gene68751:CDS | 45.0% | |
| TGATAGGAAGTGGACAATGC+CGG | + | chr3.2:92963884-92963903 | MS.gene68751:intron | 45.0% | |
| TGGTTGTTCTGCACATGTCT+CGG | + | chr3.2:92962855-92962874 | MS.gene68751:CDS | 45.0% | |
| TGTGGAGGAGGAGAAGAAAT+GGG | - | chr3.2:92963075-92963094 | None:intergenic | 45.0% | |
| TTTCACGAACTCAACCAGGT+TGG | - | chr3.2:92961898-92961917 | None:intergenic | 45.0% | |
| TTTCCTAAGCAGAAGGTCGT+AGG | - | chr3.2:92963737-92963756 | None:intergenic | 45.0% | |
| ! | AATGGTGGAAGTTGTGGCAT+TGG | - | chr3.2:92963111-92963130 | None:intergenic | 45.0% |
| ! | ATGGTGGAAGTTGTGGCATT+GGG | - | chr3.2:92963110-92963129 | None:intergenic | 45.0% |
| ! | ATTGGGGGTAGGTTGAAATG+TGG | - | chr3.2:92963093-92963112 | None:intergenic | 45.0% |
| ! | CAGTATTGCATAGGTTGAGC+AGG | - | chr3.2:92963006-92963025 | None:intergenic | 45.0% |
| ! | GTTCTTGCCATTTGCCAAAC+CGG | + | chr3.2:92961737-92961756 | MS.gene68751:intron | 45.0% |
| ! | TTTGATGGAGCACCAGACTT+AGG | + | chr3.2:92962832-92962851 | MS.gene68751:CDS | 45.0% |
| !! | ATGCTTTGATGGGCTCAACT+AGG | + | chr3.2:92964135-92964154 | MS.gene68751:CDS | 45.0% |
| !! | TGCTTTGATGGGCTCAACTA+GGG | + | chr3.2:92964136-92964155 | MS.gene68751:CDS | 45.0% |
| !!! | CCCCTCTCCTGTTTTAGTTA+GGG | + | chr3.2:92962556-92962575 | MS.gene68751:intron | 45.0% |
| !!! | CTCTCCTGTTTTAGTTAGGG+TGG | + | chr3.2:92962559-92962578 | MS.gene68751:intron | 45.0% |
| !!! | CTTTTGGAATGGTTGCAGCA+AGG | + | chr3.2:92963958-92963977 | MS.gene68751:CDS | 45.0% |
| AACAAGCGCTTGTAGCTCAG+TGG | - | chr3.2:92963772-92963791 | None:intergenic | 50.0% | |
| AAGAAACACGCGCCAGATAG+GGG | + | chr3.2:92963706-92963725 | MS.gene68751:intron | 50.0% | |
| AAGAGTCGGCCCAACACATT+AGG | + | chr3.2:92963255-92963274 | MS.gene68751:intron | 50.0% | |
| AAGGATCTCCTCTCCCTTTC+AGG | - | chr3.2:92964016-92964035 | None:intergenic | 50.0% | |
| AAGGGAGAGGAGATCCTTAC+AGG | + | chr3.2:92964018-92964037 | MS.gene68751:CDS | 50.0% | |
| ACTCTTGCGATTGACCGGTT+TGG | - | chr3.2:92961754-92961773 | None:intergenic | 50.0% | |
| ATCTATGGGTACTACACGGG+TGG | + | chr3.2:92963460-92963479 | MS.gene68751:intron | 50.0% | |
| ATGAGGGCTAATTCTGGTGC+TGG | + | chr3.2:92964185-92964204 | MS.gene68751:CDS | 50.0% | |
| CAAGGAGGACCAATGAGTTG+TGG | + | chr3.2:92962892-92962911 | MS.gene68751:CDS | 50.0% | |
| CCCAACACATTAGGAGGTCT+AGG | + | chr3.2:92963264-92963283 | MS.gene68751:intron | 50.0% | |
| CCCTAGACCTCCTAATGTGT+TGG | - | chr3.2:92963268-92963287 | None:intergenic | 50.0% | |
| GAACCTACGACCTTCTGCTT+AGG | + | chr3.2:92963731-92963750 | MS.gene68751:intron | 50.0% | |
| GATGGACATGCTGAAGCTTC+TGG | - | chr3.2:92963150-92963169 | None:intergenic | 50.0% | |
| GCACCTTCACCACAACTCAT+TGG | - | chr3.2:92962904-92962923 | None:intergenic | 50.0% | |
| GCAGAACAACCACCTAAGTC+TGG | - | chr3.2:92962847-92962866 | None:intergenic | 50.0% | |
| GCGTCTGTTTCCTAAGCAGA+AGG | - | chr3.2:92963744-92963763 | None:intergenic | 50.0% | |
| GGACCAATGAGTTGTGGTGA+AGG | + | chr3.2:92962898-92962917 | MS.gene68751:CDS | 50.0% | |
| GGTTGTTCTGCACATGTCTC+GGG | + | chr3.2:92962856-92962875 | MS.gene68751:CDS | 50.0% | |
| GTCTAACACTGTTCAGGCAG+TGG | + | chr3.2:92963663-92963682 | MS.gene68751:intron | 50.0% | |
| GTGTGACTACACCAAGTGGA+TGG | - | chr3.2:92964106-92964125 | None:intergenic | 50.0% | |
| TGCCTCTAGTTGGGACAGTT+GGG | + | chr3.2:92962613-92962632 | MS.gene68751:intron | 50.0% | |
| TGGTGGAAGTTGTGGCATTG+GGG | - | chr3.2:92963109-92963128 | None:intergenic | 50.0% | |
| TTGCCTCTAGTTGGGACAGT+TGG | + | chr3.2:92962612-92962631 | MS.gene68751:intron | 50.0% | |
| ! | ATGAGTTGTGGTGAAGGTGC+TGG | + | chr3.2:92962904-92962923 | MS.gene68751:CDS | 50.0% |
| ! | GAAATGGGTGGTGCCAATGT+TGG | - | chr3.2:92963060-92963079 | None:intergenic | 50.0% |
| ! | GGTAGGTTGAAATGTGGAGG+AGG | - | chr3.2:92963087-92963106 | None:intergenic | 50.0% |
| ! | GTTTATGGTTTGGCTCAGGG+AGG | + | chr3.2:92961649-92961668 | MS.gene68751:intron | 50.0% |
| !! | CGATTGACCGGTTTGGCAAA+TGG | - | chr3.2:92961747-92961766 | None:intergenic | 50.0% |
| !! | GGTGGTAATGGTGGAAGTTG+TGG | - | chr3.2:92963117-92963136 | None:intergenic | 50.0% |
| !!! | CCCCCTCTCCTGTTTTAGTT+AGG | + | chr3.2:92962555-92962574 | MS.gene68751:intron | 50.0% |
| AGTCGGCCCAACACATTAGG+AGG | + | chr3.2:92963258-92963277 | MS.gene68751:intron | 55.0% | |
| ATCCCCACCACCACCAACAT+TGG | + | chr3.2:92963044-92963063 | MS.gene68751:CDS | 55.0% | |
| GGAGGAGGAGAAGAAATGGG+TGG | - | chr3.2:92963072-92963091 | None:intergenic | 55.0% | |
| TCGTAGGTTCGACCCCTATC+TGG | - | chr3.2:92963721-92963740 | None:intergenic | 55.0% | |
| TGCCCAACTGTCCCAACTAG+AGG | - | chr3.2:92962618-92962637 | None:intergenic | 55.0% | |
| TGGTATGGCCTGAAAGGGAG+AGG | + | chr3.2:92964005-92964024 | MS.gene68751:CDS | 55.0% | |
| ! | ATGGGTGGTGCCAATGTTGG+TGG | - | chr3.2:92963057-92963076 | None:intergenic | 55.0% |
| ! | GAAGTTGTGGCATTGGGGGT+AGG | - | chr3.2:92963104-92963123 | None:intergenic | 55.0% |
| ! | GATGGAGCACCAGACTTAGG+TGG | + | chr3.2:92962835-92962854 | MS.gene68751:CDS | 55.0% |
| ! | GGGGGTAGGTTGAAATGTGG+AGG | - | chr3.2:92963090-92963109 | None:intergenic | 55.0% |
| ! | GGTGGAAGTTGTGGCATTGG+GGG | - | chr3.2:92963108-92963127 | None:intergenic | 55.0% |
| ! | TAGGTTGAGCAGGCTGAGCA+AGG | - | chr3.2:92962996-92963015 | None:intergenic | 55.0% |
| !! | AATGTTGGTGGTGGTGGGGA+TGG | - | chr3.2:92963045-92963064 | None:intergenic | 55.0% |
| !! | ATGTTGGTGGTGGTGGGGAT+GGG | - | chr3.2:92963044-92963063 | None:intergenic | 55.0% |
| !! | GTGCCAATGTTGGTGGTGGT+GGG | - | chr3.2:92963050-92963069 | None:intergenic | 55.0% |
| !! | TGCCAATGTTGGTGGTGGTG+GGG | - | chr3.2:92963049-92963068 | None:intergenic | 55.0% |
| AGTTGGGACAGTTGGGCAGC+TGG | + | chr3.2:92962620-92962639 | MS.gene68751:intron | 60.0% | |
| TGAGCAGGCTGAGCAAGGAG+TGG | - | chr3.2:92962991-92963010 | None:intergenic | 60.0% | |
| ! | GGTGGTGCCAATGTTGGTGG+TGG | - | chr3.2:92963054-92963073 | None:intergenic | 60.0% |
| !! | GGTGCCAATGTTGGTGGTGG+TGG | - | chr3.2:92963051-92963070 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGGGATGGGT+TGG | - | chr3.2:92963040-92963059 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 92961338 | 92964241 | 92961338 | ID=MS.gene68751 |
| chr3.2 | mRNA | 92961338 | 92964241 | 92961338 | ID=MS.gene68751.t1;Parent=MS.gene68751 |
| chr3.2 | exon | 92961338 | 92961488 | 92961338 | ID=MS.gene68751.t1.exon1;Parent=MS.gene68751.t1 |
| chr3.2 | CDS | 92961338 | 92961488 | 92961338 | ID=cds.MS.gene68751.t1;Parent=MS.gene68751.t1 |
| chr3.2 | exon | 92962737 | 92963172 | 92962737 | ID=MS.gene68751.t1.exon2;Parent=MS.gene68751.t1 |
| chr3.2 | CDS | 92962737 | 92963172 | 92962737 | ID=cds.MS.gene68751.t1;Parent=MS.gene68751.t1 |
| chr3.2 | exon | 92963890 | 92964241 | 92963890 | ID=MS.gene68751.t1.exon3;Parent=MS.gene68751.t1 |
| chr3.2 | CDS | 92963890 | 92964241 | 92963890 | ID=cds.MS.gene68751.t1;Parent=MS.gene68751.t1 |
| Gene Sequence |
| Protein sequence |
