Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69734.t1 | XP_003601447.2 | 98.8 | 161 | 2 | 0 | 1 | 161 | 55 | 215 | 1.10E-82 | 315.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69734.t1 | Q9MAP3 | 90.7 | 161 | 14 | 1 | 1 | 161 | 62 | 221 | 2.7e-77 | 289.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69734.t1 | G7J7D8 | 98.8 | 161 | 2 | 0 | 1 | 161 | 55 | 215 | 8.1e-83 | 315.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene69734 | -0.835447 | 1.67E-56 | -1.69E-46 |
| MS.gene049182 | MS.gene69734 | -0.826074 | 3.31E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene69734 | 0.804394 | 2.21E-49 | -1.69E-46 |
| MS.gene049313 | MS.gene69734 | -0.809104 | 2.23E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene69734 | 0.848089 | 7.65E-60 | -1.69E-46 |
| MS.gene050165 | MS.gene69734 | 0.867508 | 1.30E-65 | -1.69E-46 |
| MS.gene050333 | MS.gene69734 | 0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene050379 | MS.gene69734 | -0.803008 | 4.28E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene69734 | 0.821093 | 4.85E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene69734 | 0.819102 | 1.39E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene69734 | 0.815832 | 7.55E-52 | -1.69E-46 |
| MS.gene050876 | MS.gene69734 | 0.865908 | 4.20E-65 | -1.69E-46 |
| MS.gene05087 | MS.gene69734 | 0.88245 | 1.03E-70 | -1.69E-46 |
| MS.gene050986 | MS.gene69734 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene05100 | MS.gene69734 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene051579 | MS.gene69734 | -0.834223 | 3.39E-56 | -1.69E-46 |
| MS.gene054638 | MS.gene69734 | 0.829924 | 3.92E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene69734 | 0.821129 | 4.76E-53 | -1.69E-46 |
| MS.gene055204 | MS.gene69734 | -0.815909 | 7.26E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene69734 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene055634 | MS.gene69734 | 0.842132 | 3.12E-58 | -1.69E-46 |
| MS.gene055776 | MS.gene69734 | 0.816085 | 6.63E-52 | -1.69E-46 |
| MS.gene055849 | MS.gene69734 | 0.825133 | 5.53E-54 | -1.69E-46 |
| MS.gene057148 | MS.gene69734 | 0.892306 | 1.79E-74 | -1.69E-46 |
| MS.gene057986 | MS.gene69734 | 0.817777 | 2.77E-52 | -1.69E-46 |
| MS.gene058719 | MS.gene69734 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene69734 | 0.825481 | 4.58E-54 | -1.69E-46 |
| MS.gene059026 | MS.gene69734 | 0.828794 | 7.37E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene69734 | 0.835065 | 2.08E-56 | -1.69E-46 |
| MS.gene060337 | MS.gene69734 | -0.805824 | 1.11E-49 | -1.69E-46 |
| MS.gene060338 | MS.gene69734 | -0.810608 | 1.06E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene69734 | -0.810812 | 9.57E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene69734 | 0.828657 | 7.96E-55 | -1.69E-46 |
| MS.gene06105 | MS.gene69734 | 0.835643 | 1.49E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69734.t1 | MTR_3g080800 | 98.758 | 161 | 2 | 0 | 1 | 161 | 55 | 215 | 1.40e-112 | 318 |
| MS.gene69734.t1 | MTR_1g060610 | 44.286 | 140 | 75 | 2 | 12 | 148 | 5 | 144 | 5.08e-29 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69734.t1 | AT1G32990 | 90.683 | 161 | 14 | 1 | 1 | 161 | 62 | 221 | 7.62e-102 | 291 |
| MS.gene69734.t1 | AT5G51610 | 55.333 | 150 | 28 | 1 | 9 | 158 | 68 | 178 | 4.45e-46 | 149 |
| MS.gene69734.t1 | AT4G35490 | 47.101 | 138 | 70 | 2 | 14 | 148 | 13 | 150 | 4.04e-32 | 112 |
| MS.gene69734.t1 | AT4G35490 | 47.101 | 138 | 70 | 2 | 14 | 148 | 13 | 150 | 4.04e-32 | 112 |
Find 49 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAGGCACAGCGGCAAATA+TGG | 0.212659 | 3.4:-76979576 | MS.gene69734:CDS |
| TGCTTTGCCACCACCGGGTT+TGG | 0.217256 | 3.4:+76981462 | None:intergenic |
| TTCAAAGGGTGTTAACATTA+TGG | 0.250272 | 3.4:-76981264 | MS.gene69734:CDS |
| GCTTTGCCACCACCGGGTTT+GGG | 0.332344 | 3.4:+76981463 | None:intergenic |
| TGGAGCCGGTGTCGCCTTCC+CGG | 0.342001 | 3.4:+76981307 | None:intergenic |
| CCACCGGTTGGACCGGCTCT+TGG | 0.343636 | 3.4:-76981287 | MS.gene69734:CDS |
| GTTCTACTTCTTAAAGCTGC+TGG | 0.386964 | 3.4:-76981034 | MS.gene69734:intron |
| TACAACAATTGCTTCTGCTT+GGG | 0.394575 | 3.4:+76979524 | None:intergenic |
| TTGTTGTGTAGGGGTGGAAA+AGG | 0.402114 | 3.4:-76979720 | MS.gene69734:intron |
| TTTCTTTGCTTTGCCACCAC+CGG | 0.406080 | 3.4:+76981456 | None:intergenic |
| TTCAACGGGAATGATATAAC+CGG | 0.425199 | 3.4:+76981202 | None:intergenic |
| TTCTGCTTGGGTTCAAGAAT+AGG | 0.432814 | 3.4:+76979536 | None:intergenic |
| TTCTTTGCTTTGCCACCACC+GGG | 0.435691 | 3.4:+76981457 | None:intergenic |
| ACCGGCTCCACCGGTTGGAC+CGG | 0.445154 | 3.4:-76981294 | MS.gene69734:CDS |
| AATTGCTTCTGAGAAGTTGC+CGG | 0.445935 | 3.4:-76979639 | MS.gene69734:CDS |
| GCCGGTCCAACCGGTGGAGC+CGG | 0.447208 | 3.4:+76981293 | None:intergenic |
| TTACAACAATTGCTTCTGCT+TGG | 0.457628 | 3.4:+76979523 | None:intergenic |
| ATAAAGCTGGCTCTTGAAGC+CGG | 0.458425 | 3.4:-76981326 | MS.gene69734:CDS |
| GAACCAAGAGCCGGTCCAAC+CGG | 0.467333 | 3.4:+76981284 | None:intergenic |
| GCAGGCACAGCGGCAAATAT+GGG | 0.470157 | 3.4:-76979575 | MS.gene69734:CDS |
| TGGACCGGCTCTTGGTTCAA+AGG | 0.470221 | 3.4:-76981279 | MS.gene69734:CDS |
| TCAAAGACAGTGATTTCAAC+GGG | 0.477736 | 3.4:+76981188 | None:intergenic |
| TGTTGTGTAGGGGTGGAAAA+GGG | 0.492679 | 3.4:-76979719 | MS.gene69734:intron |
| GGACCGGCTCTTGGTTCAAA+GGG | 0.498892 | 3.4:-76981278 | MS.gene69734:CDS |
| ATGGTCTCACAATTTAAGTC+CGG | 0.511904 | 3.4:+76979620 | None:intergenic |
| GCTCCTCCCAAACCCGGTGG+TGG | 0.522421 | 3.4:-76981469 | MS.gene69734:CDS |
| TAAAGCTGGCTCTTGAAGCC+GGG | 0.523483 | 3.4:-76981325 | MS.gene69734:CDS |
| GAAGGCGACACCGGCTCCAC+CGG | 0.524077 | 3.4:-76981303 | MS.gene69734:CDS |
| ACCGGGTTTGGGAGGAGCCA+TGG | 0.525469 | 3.4:+76981474 | None:intergenic |
| GCCATGGCTCCTCCCAAACC+CGG | 0.532943 | 3.4:-76981475 | MS.gene69734:CDS |
| TTAAGAAGTAGAACAGAAGC+AGG | 0.535760 | 3.4:+76981043 | None:intergenic |
| TGAAGCCGGGAAGGCGACAC+CGG | 0.536862 | 3.4:-76981312 | MS.gene69734:CDS |
| TTGCCACCACCGGGTTTGGG+AGG | 0.539113 | 3.4:+76981466 | None:intergenic |
| TGCTTGGGTTCAAGAATAGG+AGG | 0.562010 | 3.4:+76979539 | None:intergenic |
| GCGACACCGGCTCCACCGGT+TGG | 0.574069 | 3.4:-76981299 | MS.gene69734:CDS |
| AGTGGTTGGAATCATAAAGC+TGG | 0.577839 | 3.4:-76981339 | MS.gene69734:CDS |
| ATCAAAGACAGTGATTTCAA+CGG | 0.578769 | 3.4:+76981187 | None:intergenic |
| AAAGGGTTCAAAAGACCCTA+AGG | 0.579244 | 3.4:-76979702 | MS.gene69734:CDS |
| CCAAGAGCCGGTCCAACCGG+TGG | 0.580423 | 3.4:+76981287 | None:intergenic |
| TCAACGGGAATGATATAACC+GGG | 0.582949 | 3.4:+76981203 | None:intergenic |
| GCTGGCTCTTGAAGCCGGGA+AGG | 0.585779 | 3.4:-76981321 | MS.gene69734:CDS |
| GGTGGTGGCAAAGCAAAGAA+AGG | 0.594161 | 3.4:-76981454 | MS.gene69734:intron |
| ACACCCTTTGAACCAAGAGC+CGG | 0.596971 | 3.4:+76981275 | None:intergenic |
| AATTCTCATAGCTGATTCGA+TGG | 0.598811 | 3.4:+76979601 | None:intergenic |
| TCAGCTATGAGAATTATAGC+AGG | 0.610466 | 3.4:-76979593 | MS.gene69734:CDS |
| AGAAGTAGAACAGAAGCAGG+TGG | 0.625937 | 3.4:+76981046 | None:intergenic |
| GCTAGAACTGCTGATAAACC+CGG | 0.652419 | 3.4:-76981221 | MS.gene69734:CDS |
| ATGGCTCCTCCCAAACCCGG+TGG | 0.666423 | 3.4:-76981472 | MS.gene69734:CDS |
| GAGAATTATAGCAGGCACAG+CGG | 0.702772 | 3.4:-76979585 | MS.gene69734:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATAACATAATATCAA+AGG | + | chr3.4:76979993-76980012 | None:intergenic | 15.0% |
| !! | ATACTGTATAAAAAAAAATC+AGG | + | chr3.4:76981012-76981031 | None:intergenic | 15.0% |
| !! | TAACATAACATAATATCAAA+GGG | + | chr3.4:76979992-76980011 | None:intergenic | 15.0% |
| !! | TGAACTATATTAAAATTGTT+AGG | - | chr3.4:76980547-76980566 | MS.gene69734:intron | 15.0% |
| !! | AACATAACATAATATCAAAG+GGG | + | chr3.4:76979991-76980010 | None:intergenic | 20.0% |
| !! | ACAAACAAAATCGAAATTAA+TGG | + | chr3.4:76979587-76979606 | None:intergenic | 20.0% |
| !! | AGTTGTAATATATGAAACAT+AGG | - | chr3.4:76980115-76980134 | MS.gene69734:intron | 20.0% |
| !! | ATGTAATAGACTTTATAGTT+GGG | - | chr3.4:76981030-76981049 | MS.gene69734:intron | 20.0% |
| !! | ATTCTAACAAATTATATCAC+AGG | + | chr3.4:76980023-76980042 | None:intergenic | 20.0% |
| !! | TATGTAATAGACTTTATAGT+TGG | - | chr3.4:76981029-76981048 | MS.gene69734:intron | 20.0% |
| !!! | ATTAATTTAGAGTAGAGTTA+AGG | - | chr3.4:76980450-76980469 | MS.gene69734:intron | 20.0% |
| !!! | TATTTTGTTGTGTTATTTTC+AGG | - | chr3.4:76979897-76979916 | MS.gene69734:intron | 20.0% |
| ! | AAAAAAAATCAGGTACAGAA+AGG | + | chr3.4:76981002-76981021 | None:intergenic | 25.0% |
| ! | AAATTGAATCACAGAGTAAA+CGG | + | chr3.4:76980648-76980667 | None:intergenic | 25.0% |
| ! | AAGATAGTAGCAGAAAATAT+TGG | - | chr3.4:76981060-76981079 | MS.gene69734:CDS | 25.0% |
| ! | AATGAAATATAGCAATGACT+AGG | + | chr3.4:76980400-76980419 | None:intergenic | 25.0% |
| ! | AGATAGTAGCAGAAAATATT+GGG | - | chr3.4:76981061-76981080 | MS.gene69734:CDS | 25.0% |
| ! | AGGATCATTGAAACTTAAAT+AGG | - | chr3.4:76980470-76980489 | MS.gene69734:intron | 25.0% |
| ! | ATGAAATATAGCAATGACTA+GGG | + | chr3.4:76980399-76980418 | None:intergenic | 25.0% |
| ! | ATTAAAACACCTAGTAAACA+GGG | + | chr3.4:76980926-76980945 | None:intergenic | 25.0% |
| ! | ATTGAAACTTAAATAGGGTA+AGG | - | chr3.4:76980476-76980495 | MS.gene69734:intron | 25.0% |
| ! | CTAAATATCCAATATCAGTA+TGG | + | chr3.4:76980576-76980595 | None:intergenic | 25.0% |
| ! | CTCTAAATTAATGACATTTG+AGG | + | chr3.4:76980442-76980461 | None:intergenic | 25.0% |
| ! | GGATCATTGAAACTTAAATA+GGG | - | chr3.4:76980471-76980490 | MS.gene69734:intron | 25.0% |
| !! | CACAGTATTTTACATATCAT+TGG | + | chr3.4:76980798-76980817 | None:intergenic | 25.0% |
| !!! | ATGATCTATTTGTTTTAAGC+TGG | - | chr3.4:76980675-76980694 | MS.gene69734:intron | 25.0% |
| !!! | TATTGGTTTGATAGATTATC+AGG | - | chr3.4:76981175-76981194 | MS.gene69734:intron | 25.0% |
| AAAACGAAGCAGATATGTTA+AGG | - | chr3.4:76981151-76981170 | MS.gene69734:intron | 30.0% | |
| AAGTGATTGTATGTAATGAC+TGG | - | chr3.4:76980203-76980222 | MS.gene69734:intron | 30.0% | |
| AGCAGATATGTTAAGGTTAT+TGG | - | chr3.4:76981158-76981177 | MS.gene69734:intron | 30.0% | |
| ATATAGTTCACTTAGTTGCA+AGG | + | chr3.4:76980537-76980556 | None:intergenic | 30.0% | |
| ATCAAAGACAGTGATTTCAA+CGG | + | chr3.4:76979811-76979830 | None:intergenic | 30.0% | |
| ATTAGTCATTAGCTGGAATT+TGG | - | chr3.4:76980358-76980377 | MS.gene69734:intron | 30.0% | |
| ATTTACTAGAGATGCATTAG+TGG | + | chr3.4:76980075-76980094 | None:intergenic | 30.0% | |
| CATTAAAACACCTAGTAAAC+AGG | + | chr3.4:76980927-76980946 | None:intergenic | 30.0% | |
| CTAATGACTAATAACTTTCG+TGG | + | chr3.4:76980350-76980369 | None:intergenic | 30.0% | |
| CTAGTAAATAAGCCTGTTAT+TGG | - | chr3.4:76980086-76980105 | MS.gene69734:intron | 30.0% | |
| GAAAGTTATTAGTCATTAGC+TGG | - | chr3.4:76980351-76980370 | MS.gene69734:intron | 30.0% | |
| GCTAACTATAAGACACTATT+GGG | - | chr3.4:76980294-76980313 | MS.gene69734:intron | 30.0% | |
| TCCAAACTCTATTATACTGA+TGG | - | chr3.4:76981246-76981265 | MS.gene69734:CDS | 30.0% | |
| TCCATCAGTATAATAGAGTT+TGG | + | chr3.4:76981250-76981269 | None:intergenic | 30.0% | |
| TTAAAACACCTAGTAAACAG+GGG | + | chr3.4:76980925-76980944 | None:intergenic | 30.0% | |
| TTTAAGCTGGATCTAATCAA+GGG | - | chr3.4:76980688-76980707 | MS.gene69734:intron | 30.0% | |
| ! | AAATTAATGACATTTGAGGC+AGG | + | chr3.4:76980438-76980457 | None:intergenic | 30.0% |
| ! | TTTTAAGCTGGATCTAATCA+AGG | - | chr3.4:76980687-76980706 | MS.gene69734:intron | 30.0% |
| !! | CTGTTTACTAGGTGTTTTAA+TGG | - | chr3.4:76980925-76980944 | MS.gene69734:intron | 30.0% |
| !! | TTCAAAGGGTGTTAACATTA+TGG | - | chr3.4:76979731-76979750 | MS.gene69734:intron | 30.0% |
| !!! | AAGGTAAGTTTTGTTCAAGA+TGG | + | chr3.4:76980983-76981002 | None:intergenic | 30.0% |
| !!! | AGGGAATGAGATTTTTTTAG+TGG | - | chr3.4:76980850-76980869 | MS.gene69734:intron | 30.0% |
| !!! | AGGTAAGTTTTGTTCAAGAT+GGG | + | chr3.4:76980982-76981001 | None:intergenic | 30.0% |
| !!! | TTACTAGGTGTTTTAATGGA+TGG | - | chr3.4:76980929-76980948 | MS.gene69734:intron | 30.0% |
| !!! | TTTTTTAGTGGTTACATTCG+AGG | - | chr3.4:76980862-76980881 | MS.gene69734:intron | 30.0% |
| ACAACTTGTAGACCAATAAC+AGG | + | chr3.4:76980101-76980120 | None:intergenic | 35.0% | |
| ACTATAAGACACTATTGGGT+CGG | - | chr3.4:76980298-76980317 | MS.gene69734:intron | 35.0% | |
| AGAATTTCTCCTACACTACA+AGG | - | chr3.4:76980830-76980849 | MS.gene69734:intron | 35.0% | |
| ATACCTTCAGTATAAAGTGC+CGG | - | chr3.4:76980254-76980273 | MS.gene69734:intron | 35.0% | |
| ATGGTCTCACAATTTAAGTC+CGG | + | chr3.4:76981378-76981397 | None:intergenic | 35.0% | |
| GAATTTCTCCTACACTACAA+GGG | - | chr3.4:76980831-76980850 | MS.gene69734:intron | 35.0% | |
| GGCTAACTATAAGACACTAT+TGG | - | chr3.4:76980293-76980312 | MS.gene69734:intron | 35.0% | |
| GTCTTGAAATATGATCAGTC+TGG | - | chr3.4:76981103-76981122 | MS.gene69734:intron | 35.0% | |
| TACAACAATTGCTTCTGCTT+GGG | + | chr3.4:76981474-76981493 | None:intergenic | 35.0% | |
| TACCATAGTCTATATAGTGC+CGG | + | chr3.4:76980166-76980185 | None:intergenic | 35.0% | |
| TCAAAGACAGTGATTTCAAC+GGG | + | chr3.4:76979810-76979829 | None:intergenic | 35.0% | |
| TCAGCTATGAGAATTATAGC+AGG | - | chr3.4:76981402-76981421 | MS.gene69734:intron | 35.0% | |
| TTAAGAAGTAGAACAGAAGC+AGG | + | chr3.4:76979955-76979974 | None:intergenic | 35.0% | |
| TTACAACAATTGCTTCTGCT+TGG | + | chr3.4:76981475-76981494 | None:intergenic | 35.0% | |
| TTAGAACATGTTTGTGTCTG+TGG | - | chr3.4:76979628-76979647 | MS.gene69734:CDS | 35.0% | |
| TTAGGCATCCATACTGATAT+TGG | - | chr3.4:76980565-76980584 | MS.gene69734:intron | 35.0% | |
| TTCAACGGGAATGATATAAC+CGG | + | chr3.4:76979796-76979815 | None:intergenic | 35.0% | |
| ! | ACATTCGAGGTATTCTTACA+AGG | - | chr3.4:76980875-76980894 | MS.gene69734:intron | 35.0% |
| ! | TCAAGATGGGGAGATTTTAA+TGG | + | chr3.4:76980969-76980988 | None:intergenic | 35.0% |
| !! | AATTCTCATAGCTGATTCGA+TGG | + | chr3.4:76981397-76981416 | None:intergenic | 35.0% |
| !! | ATGGACTGATTTGTTGTGTA+GGG | - | chr3.4:76981265-76981284 | MS.gene69734:CDS | 35.0% |
| !!! | GGTAAGTTTTGTTCAAGATG+GGG | + | chr3.4:76980981-76981000 | None:intergenic | 35.0% |
| !!! | TTCCTACTTTTTGTGCCTTA+GGG | + | chr3.4:76981311-76981330 | None:intergenic | 35.0% |
| !!! | TTTCCTACTTTTTGTGCCTT+AGG | + | chr3.4:76981312-76981331 | None:intergenic | 35.0% |
| AAAGGGTTCAAAAGACCCTA+AGG | - | chr3.4:76981293-76981312 | MS.gene69734:CDS | 40.0% | |
| AAGGCTACATCCACTACTTA+TGG | - | chr3.4:76980894-76980913 | MS.gene69734:intron | 40.0% | |
| AGACACGTGTTCCAATACTT+GGG | - | chr3.4:76980230-76980249 | MS.gene69734:intron | 40.0% | |
| AGATTCACTCGTAAACAGGA+TGG | + | chr3.4:76981214-76981233 | None:intergenic | 40.0% | |
| AGTGGTTGGAATCATAAAGC+TGG | - | chr3.4:76979656-76979675 | MS.gene69734:CDS | 40.0% | |
| ATCTCATTCCCTTGTAGTGT+AGG | + | chr3.4:76980842-76980861 | None:intergenic | 40.0% | |
| CACTAGATTCACTCGTAAAC+AGG | + | chr3.4:76981218-76981237 | None:intergenic | 40.0% | |
| GTTCTACTTCTTAAAGCTGC+TGG | - | chr3.4:76979961-76979980 | MS.gene69734:intron | 40.0% | |
| TCAACGGGAATGATATAACC+GGG | + | chr3.4:76979795-76979814 | None:intergenic | 40.0% | |
| TTCTGCTTGGGTTCAAGAAT+AGG | + | chr3.4:76981462-76981481 | None:intergenic | 40.0% | |
| ! | AATTGCTTCTGAGAAGTTGC+CGG | - | chr3.4:76981356-76981375 | MS.gene69734:intron | 40.0% |
| ! | TAATGACATTTGAGGCAGGA+AGG | + | chr3.4:76980434-76980453 | None:intergenic | 40.0% |
| !! | GATGGACTGATTTGTTGTGT+AGG | - | chr3.4:76981264-76981283 | MS.gene69734:CDS | 40.0% |
| !! | TGGACTGATTTGTTGTGTAG+GGG | - | chr3.4:76981266-76981285 | MS.gene69734:CDS | 40.0% |
| AGAAGTAGAACAGAAGCAGG+TGG | + | chr3.4:76979952-76979971 | None:intergenic | 45.0% | |
| CACCGGCACTATATAGACTA+TGG | - | chr3.4:76980161-76980180 | MS.gene69734:intron | 45.0% | |
| CAGACACGTGTTCCAATACT+TGG | - | chr3.4:76980229-76980248 | MS.gene69734:intron | 45.0% | |
| GACCCTAAGGCACAAAAAGT+AGG | - | chr3.4:76981306-76981325 | MS.gene69734:CDS | 45.0% | |
| GAGAATTATAGCAGGCACAG+CGG | - | chr3.4:76981410-76981429 | MS.gene69734:intron | 45.0% | |
| GCCTTACAACTATGTAGCAC+CGG | + | chr3.4:76980276-76980295 | None:intergenic | 45.0% | |
| GCTAGAACTGCTGATAAACC+CGG | - | chr3.4:76979774-76979793 | MS.gene69734:intron | 45.0% | |
| TGCTTGGGTTCAAGAATAGG+AGG | + | chr3.4:76981459-76981478 | None:intergenic | 45.0% | |
| TGTTGTGTAGGGGTGGAAAA+GGG | - | chr3.4:76981276-76981295 | MS.gene69734:CDS | 45.0% | |
| TTGTTGTGTAGGGGTGGAAA+AGG | - | chr3.4:76981275-76981294 | MS.gene69734:CDS | 45.0% | |
| TTTCTTTGCTTTGCCACCAC+CGG | + | chr3.4:76979542-76979561 | None:intergenic | 45.0% | |
| TTTGTGTCTGTGGCAAACAG+TGG | - | chr3.4:76979638-76979657 | MS.gene69734:CDS | 45.0% | |
| ! | ATAAAGCTGGCTCTTGAAGC+CGG | - | chr3.4:76979669-76979688 | MS.gene69734:CDS | 45.0% |
| ! | CTGAAGGTATGCCCAAGTAT+TGG | + | chr3.4:76980244-76980263 | None:intergenic | 45.0% |
| !! | ACTGATTTGTTGTGTAGGGG+TGG | - | chr3.4:76981269-76981288 | MS.gene69734:CDS | 45.0% |
| ACACCCTTTGAACCAAGAGC+CGG | + | chr3.4:76979723-76979742 | None:intergenic | 50.0% | |
| AGGGGTTCAGCCATAAGTAG+TGG | + | chr3.4:76980907-76980926 | None:intergenic | 50.0% | |
| CACTATTGGGTCGGCATGTT+TGG | - | chr3.4:76980307-76980326 | MS.gene69734:intron | 50.0% | |
| CATAGGCACCACACTAGATG+CGG | - | chr3.4:76980132-76980151 | MS.gene69734:intron | 50.0% | |
| GCTGGATCTAATCAAGGGTG+AGG | - | chr3.4:76980693-76980712 | MS.gene69734:intron | 50.0% | |
| TGGCTGAACCCCTGTTTACT+AGG | - | chr3.4:76980914-76980933 | MS.gene69734:intron | 50.0% | |
| TGTCTGTGGCAAACAGTGGT+TGG | - | chr3.4:76979642-76979661 | MS.gene69734:CDS | 50.0% | |
| TTCTTTGCTTTGCCACCACC+GGG | + | chr3.4:76979541-76979560 | None:intergenic | 50.0% | |
| ! | GCACCGGCACTTTATACTGA+AGG | + | chr3.4:76980260-76980279 | None:intergenic | 50.0% |
| ! | GGTGGTGGCAAAGCAAAGAA+AGG | - | chr3.4:76979541-76979560 | MS.gene69734:CDS | 50.0% |
| ! | TAAAGCTGGCTCTTGAAGCC+GGG | - | chr3.4:76979670-76979689 | MS.gene69734:CDS | 50.0% |
| ! | TGACATTTGAGGCAGGAAGG+AGG | + | chr3.4:76980431-76980450 | None:intergenic | 50.0% |
| !! | GCCGGTGCTACATAGTTGTA+AGG | - | chr3.4:76980272-76980291 | MS.gene69734:intron | 50.0% |
| ACTAGATGCGGACACGACAC+CGG | - | chr3.4:76980144-76980163 | MS.gene69734:intron | 55.0% | |
| AGCAGGCACAGCGGCAAATA+TGG | - | chr3.4:76981419-76981438 | MS.gene69734:intron | 55.0% | |
| GCAGGCACAGCGGCAAATAT+GGG | - | chr3.4:76981420-76981439 | MS.gene69734:intron | 55.0% | |
| TGTCGTGTCCGCATCTAGTG+TGG | + | chr3.4:76980143-76980162 | None:intergenic | 55.0% | |
| ! | GGACCGGCTCTTGGTTCAAA+GGG | - | chr3.4:76979717-76979736 | MS.gene69734:intron | 55.0% |
| ! | TGGACCGGCTCTTGGTTCAA+AGG | - | chr3.4:76979716-76979735 | MS.gene69734:intron | 55.0% |
| GAACCAAGAGCCGGTCCAAC+CGG | + | chr3.4:76979714-76979733 | None:intergenic | 60.0% | |
| GCTTTGCCACCACCGGGTTT+GGG | + | chr3.4:76979535-76979554 | None:intergenic | 60.0% | |
| TGCTTTGCCACCACCGGGTT+TGG | + | chr3.4:76979536-76979555 | None:intergenic | 60.0% | |
| ATGGCTCCTCCCAAACCCGG+TGG | - | chr3.4:76979523-76979542 | MS.gene69734:CDS | 65.0% | |
| GGGTCGGCATGTTTGGCCAG+CGG | - | chr3.4:76980314-76980333 | MS.gene69734:intron | 65.0% | |
| TCGTGGTGCGTAGTTGCCGC+TGG | + | chr3.4:76980333-76980352 | None:intergenic | 65.0% | |
| TGAAGCCGGGAAGGCGACAC+CGG | - | chr3.4:76979683-76979702 | MS.gene69734:CDS | 65.0% | |
| TTGCCACCACCGGGTTTGGG+AGG | + | chr3.4:76979532-76979551 | None:intergenic | 65.0% | |
| ! | GCTGGCTCTTGAAGCCGGGA+AGG | - | chr3.4:76979674-76979693 | MS.gene69734:CDS | 65.0% |
| CCAAGAGCCGGTCCAACCGG+TGG | + | chr3.4:76979711-76979730 | None:intergenic | 70.0% | |
| GCTCCTCCCAAACCCGGTGG+TGG | - | chr3.4:76979526-76979545 | MS.gene69734:CDS | 70.0% | |
| ! | ACCGGCTCCACCGGTTGGAC+CGG | - | chr3.4:76979701-76979720 | MS.gene69734:CDS | 70.0% |
| ! | CCACCGGTTGGACCGGCTCT+TGG | - | chr3.4:76979708-76979727 | MS.gene69734:CDS | 70.0% |
| !! | GAAGGCGACACCGGCTCCAC+CGG | - | chr3.4:76979692-76979711 | MS.gene69734:CDS | 70.0% |
| !! | TGGAGCCGGTGTCGCCTTCC+CGG | + | chr3.4:76979691-76979710 | None:intergenic | 70.0% |
| GCCGGTCCAACCGGTGGAGC+CGG | + | chr3.4:76979705-76979724 | None:intergenic | 75.0% | |
| !! | GCGACACCGGCTCCACCGGT+TGG | - | chr3.4:76979696-76979715 | MS.gene69734:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 76979523 | 76981494 | 76979523 | ID=MS.gene69734 |
| chr3.4 | mRNA | 76979523 | 76981494 | 76979523 | ID=MS.gene69734.t1;Parent=MS.gene69734 |
| chr3.4 | exon | 76981455 | 76981494 | 76981455 | ID=MS.gene69734.t1.exon1;Parent=MS.gene69734.t1 |
| chr3.4 | CDS | 76981455 | 76981494 | 76981455 | ID=cds.MS.gene69734.t1;Parent=MS.gene69734.t1 |
| chr3.4 | exon | 76981187 | 76981359 | 76981187 | ID=MS.gene69734.t1.exon2;Parent=MS.gene69734.t1 |
| chr3.4 | CDS | 76981187 | 76981359 | 76981187 | ID=cds.MS.gene69734.t1;Parent=MS.gene69734.t1 |
| chr3.4 | exon | 76981035 | 76981098 | 76981035 | ID=MS.gene69734.t1.exon3;Parent=MS.gene69734.t1 |
| chr3.4 | CDS | 76981035 | 76981098 | 76981035 | ID=cds.MS.gene69734.t1;Parent=MS.gene69734.t1 |
| chr3.4 | exon | 76979523 | 76979731 | 76979523 | ID=MS.gene69734.t1.exon4;Parent=MS.gene69734.t1 |
| chr3.4 | CDS | 76979523 | 76979731 | 76979523 | ID=cds.MS.gene69734.t1;Parent=MS.gene69734.t1 |
| Gene Sequence |
| Protein sequence |
