Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71150.t1 | XP_003595727.2 | 97.8 | 137 | 3 | 0 | 1 | 137 | 1 | 137 | 3.40E-72 | 280.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71150.t1 | Q8RUD6 | 65.4 | 133 | 44 | 2 | 5 | 137 | 36 | 166 | 3.0e-45 | 182.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71150.t1 | G7IGQ0 | 97.8 | 137 | 3 | 0 | 1 | 137 | 1 | 137 | 2.4e-72 | 280.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene71150 | -0.811616 | 6.40E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene71150 | 0.826438 | 2.71E-54 | -1.69E-46 |
| MS.gene049634 | MS.gene71150 | 0.825146 | 5.50E-54 | -1.69E-46 |
| MS.gene050082 | MS.gene71150 | 0.804032 | 2.62E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene71150 | -0.800939 | 1.14E-48 | -1.69E-46 |
| MS.gene050333 | MS.gene71150 | -0.837946 | 3.85E-57 | -1.69E-46 |
| MS.gene050444 | MS.gene71150 | -0.815051 | 1.13E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene71150 | -0.80847 | 3.05E-50 | -1.69E-46 |
| MS.gene05079 | MS.gene71150 | 0.834205 | 3.43E-56 | -1.69E-46 |
| MS.gene05104 | MS.gene71150 | 0.811624 | 6.38E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene71150 | 0.848199 | 7.14E-60 | -1.69E-46 |
| MS.gene051364 | MS.gene71150 | 0.826902 | 2.10E-54 | -1.69E-46 |
| MS.gene051366 | MS.gene71150 | 0.830284 | 3.20E-55 | -1.69E-46 |
| MS.gene051367 | MS.gene71150 | 0.817347 | 3.46E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene71150 | -0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene052805 | MS.gene71150 | 0.837357 | 5.45E-57 | -1.69E-46 |
| MS.gene053420 | MS.gene71150 | 0.874328 | 7.36E-68 | -1.69E-46 |
| MS.gene053561 | MS.gene71150 | 0.807556 | 4.77E-50 | -1.69E-46 |
| MS.gene054707 | MS.gene71150 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene71150 | 0.804869 | 1.76E-49 | -1.69E-46 |
| MS.gene055111 | MS.gene71150 | 0.839327 | 1.69E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene71150 | 0.840746 | 7.22E-58 | -1.69E-46 |
| MS.gene055202 | MS.gene71150 | 0.813894 | 2.03E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene71150 | -0.809391 | 1.94E-50 | -1.69E-46 |
| MS.gene056224 | MS.gene71150 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene056856 | MS.gene71150 | 0.837799 | 4.20E-57 | -1.69E-46 |
| MS.gene058068 | MS.gene71150 | 0.807246 | 5.55E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene71150 | 0.821624 | 3.66E-53 | -1.69E-46 |
| MS.gene058175 | MS.gene71150 | 0.802251 | 6.13E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene71150 | 0.824101 | 9.69E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene71150 | -0.8059 | 1.07E-49 | -1.69E-46 |
| MS.gene059038 | MS.gene71150 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene71150 | -0.812521 | 4.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71150.t1 | MTR_2g059890 | 97.810 | 137 | 3 | 0 | 1 | 137 | 1 | 137 | 1.47e-99 | 281 |
| MS.gene71150.t1 | MTR_2g017630 | 89.051 | 137 | 15 | 0 | 1 | 137 | 1 | 137 | 2.83e-90 | 258 |
| MS.gene71150.t1 | MTR_2g059890 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 8.09e-68 | 200 |
| MS.gene71150.t1 | MTR_2g059890 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 2.52e-67 | 199 |
| MS.gene71150.t1 | MTR_2g059890 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 4.24e-67 | 201 |
| MS.gene71150.t1 | MTR_8g075420 | 54.867 | 113 | 48 | 2 | 9 | 119 | 12 | 123 | 1.36e-36 | 122 |
| MS.gene71150.t1 | MTR_5g022390 | 55.556 | 108 | 45 | 2 | 10 | 115 | 30 | 136 | 9.54e-34 | 115 |
| MS.gene71150.t1 | MTR_8g075420 | 55.556 | 90 | 37 | 2 | 9 | 96 | 12 | 100 | 2.04e-27 | 98.2 |
| MS.gene71150.t1 | MTR_5g023170 | 42.593 | 108 | 61 | 1 | 12 | 119 | 75 | 181 | 3.91e-27 | 99.8 |
| MS.gene71150.t1 | MTR_5g022390 | 57.333 | 75 | 29 | 2 | 10 | 82 | 30 | 103 | 3.19e-20 | 80.5 |
| MS.gene71150.t1 | MTR_5g023170 | 44.706 | 85 | 46 | 1 | 12 | 96 | 75 | 158 | 1.67e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71150.t1 | AT2G21045 | 64.029 | 139 | 46 | 3 | 1 | 137 | 30 | 166 | 3.29e-60 | 183 |
| MS.gene71150.t1 | AT5G66170 | 42.975 | 121 | 66 | 2 | 1 | 119 | 5 | 124 | 2.14e-32 | 111 |
| MS.gene71150.t1 | AT2G17850 | 49.580 | 119 | 57 | 2 | 3 | 119 | 25 | 142 | 2.21e-32 | 112 |
| MS.gene71150.t1 | AT5G66170 | 43.089 | 123 | 65 | 3 | 1 | 119 | 5 | 126 | 6.54e-31 | 108 |
| MS.gene71150.t1 | AT5G66040 | 44.444 | 108 | 59 | 1 | 12 | 119 | 10 | 116 | 3.64e-27 | 98.2 |
| MS.gene71150.t1 | AT4G35770 | 42.056 | 107 | 57 | 1 | 22 | 128 | 81 | 182 | 6.29e-26 | 96.7 |
| MS.gene71150.t1 | AT2G17850 | 39.073 | 151 | 57 | 3 | 3 | 119 | 25 | 174 | 1.40e-25 | 95.9 |
| MS.gene71150.t1 | AT2G17850 | 48.913 | 92 | 44 | 2 | 3 | 92 | 25 | 115 | 5.02e-23 | 87.8 |
| MS.gene71150.t1 | AT5G66170 | 40.816 | 98 | 55 | 2 | 1 | 96 | 5 | 101 | 2.56e-22 | 86.3 |
| MS.gene71150.t1 | AT4G35770 | 42.683 | 82 | 47 | 0 | 22 | 103 | 81 | 162 | 3.93e-18 | 76.3 |
| MS.gene71150.t1 | AT4G35770 | 45.333 | 75 | 41 | 0 | 22 | 96 | 81 | 155 | 4.60e-18 | 75.9 |
| MS.gene71150.t1 | AT4G35770 | 46.667 | 60 | 32 | 0 | 22 | 81 | 81 | 140 | 1.79e-14 | 66.2 |
| MS.gene71150.t1 | AT5G66040 | 44.068 | 59 | 33 | 0 | 61 | 119 | 3 | 61 | 7.41e-13 | 59.7 |
Find 32 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACTTGGTTAACAAAATT+TGG | 0.077440 | 4.1:-57662387 | None:intergenic |
| GTCATAGACTTACCGAATTA+TGG | 0.227152 | 4.1:-57662602 | None:intergenic |
| TTCTTCTGTGCTGAACAAAT+AGG | 0.311470 | 4.1:-57662102 | None:intergenic |
| TTGAAACTCTTACTCCTTTG+TGG | 0.372195 | 4.1:-57661769 | None:intergenic |
| CAAATTCAGGCTTGTAATGC+TGG | 0.378391 | 4.1:+57662549 | MS.gene71150:intron |
| TGGGTGGATGCTGGATTTGC+AGG | 0.391447 | 4.1:+57664155 | MS.gene71150:CDS |
| AGATGAATCTAGCAGATCTT+TGG | 0.407928 | 4.1:-57661908 | None:intergenic |
| TCTTCTGTGCTGAACAAATA+GGG | 0.420884 | 4.1:-57662101 | None:intergenic |
| GGGAGGCTACTCTGCGTGGG+TGG | 0.422325 | 4.1:+57664139 | MS.gene71150:CDS |
| TTTGGTAGCATGGACATCTA+AGG | 0.431769 | 4.1:-57661890 | None:intergenic |
| TCTTATATATTGCTTCTACT+TGG | 0.436133 | 4.1:-57662401 | None:intergenic |
| GAGGAAGATCAAGTCGAGCC+TGG | 0.438094 | 4.1:+57662571 | MS.gene71150:CDS |
| TACTCTGCGTGGGTGGATGC+TGG | 0.443842 | 4.1:+57664146 | MS.gene71150:CDS |
| CTGGGTTGATCTCCATAATT+CGG | 0.453932 | 4.1:+57662590 | MS.gene71150:CDS |
| AAAGATCTGCTAGATTCATC+TGG | 0.488656 | 4.1:+57661910 | MS.gene71150:CDS |
| TATTTGTTCAGCACAGAAGA+AGG | 0.510217 | 4.1:+57662104 | MS.gene71150:CDS |
| ATTTAAACATATTGTTAACA+TGG | 0.515720 | 4.1:+57664115 | MS.gene71150:CDS |
| CGTTAATAGCATTCTCAACA+TGG | 0.522680 | 4.1:-57662076 | None:intergenic |
| CTAGCAGATCTTTGGTAGCA+TGG | 0.528750 | 4.1:-57661900 | None:intergenic |
| TTTAAACATATTGTTAACAT+GGG | 0.557076 | 4.1:+57664116 | MS.gene71150:CDS |
| CGAATTATGGAGATCAACCC+AGG | 0.573448 | 4.1:-57662589 | None:intergenic |
| AGGAAGATCAAGTCGAGCCT+GGG | 0.580327 | 4.1:+57662572 | MS.gene71150:CDS |
| AAACATATTGTTAACATGGG+GGG | 0.595696 | 4.1:+57664119 | MS.gene71150:CDS |
| AGAAGCAATATATAAGAGTG+AGG | 0.598950 | 4.1:+57662407 | MS.gene71150:CDS |
| GTTACAATTATCTTGATGTG+AGG | 0.616591 | 4.1:+57661932 | MS.gene71150:CDS |
| GAGTGAGGATCACTTAATTG+TGG | 0.617072 | 4.1:+57662422 | MS.gene71150:CDS |
| TTAAACATATTGTTAACATG+GGG | 0.636631 | 4.1:+57664117 | MS.gene71150:CDS |
| TAAACATATTGTTAACATGG+GGG | 0.658767 | 4.1:+57664118 | MS.gene71150:CDS |
| AAATATAATGGACACCACAA+AGG | 0.664806 | 4.1:+57661755 | None:intergenic |
| ATTCAGGCTTGTAATGCTGG+AGG | 0.667532 | 4.1:+57662552 | MS.gene71150:intron |
| CCACTGAAATAGGACTGTGG+AGG | 0.719443 | 4.1:+57662040 | MS.gene71150:intron |
| TGTCCACTGAAATAGGACTG+TGG | 0.721242 | 4.1:+57662037 | MS.gene71150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATTAATTATTACTAA+TGG | - | chr4.1:57663548-57663567 | None:intergenic | 10.0% |
| !! | AGTAATTAATTATTACTAAT+GGG | - | chr4.1:57663547-57663566 | None:intergenic | 10.0% |
| !! | CAAAAATAAATAAAAATAGT+AGG | + | chr4.1:57663503-57663522 | MS.gene71150:intron | 10.0% |
| !! | TAAATTATTGTTATGTTTAT+TGG | + | chr4.1:57663388-57663407 | MS.gene71150:intron | 10.0% |
| !! | TATTAATTTACCAAAAAATT+AGG | + | chr4.1:57662665-57662684 | MS.gene71150:intron | 10.0% |
| !!! | ATTTTTTAAATTTTTTTTGG+TGG | - | chr4.1:57662927-57662946 | None:intergenic | 10.0% |
| !!! | TTGTTTTTTTTATATTAAAG+AGG | + | chr4.1:57663983-57664002 | MS.gene71150:intron | 10.0% |
| !!! | TTTATTTTTTTGTAGTAAAA+AGG | + | chr4.1:57663235-57663254 | MS.gene71150:intron | 10.0% |
| !!! | TTTTTTTAAATTTTTTTTGG+TGG | - | chr4.1:57663095-57663114 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCAAATGATTAA+GGG | - | chr4.1:57663358-57663377 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTCAAATGATTA+AGG | - | chr4.1:57663359-57663378 | None:intergenic | 10.0% |
| !! | AAAATTAAAAATGAAGAAAC+TGG | - | chr4.1:57661973-57661992 | None:intergenic | 15.0% |
| !! | AAATTAAAAATGAAGAAACT+GGG | - | chr4.1:57661972-57661991 | None:intergenic | 15.0% |
| !! | AGAAAAAAATAATATATGCA+AGG | + | chr4.1:57663014-57663033 | MS.gene71150:intron | 15.0% |
| !! | ATTTAAACATATTGTTAACA+TGG | + | chr4.1:57664115-57664134 | MS.gene71150:CDS | 15.0% |
| !! | TAGAAAAAAATTGAAACTAA+CGG | - | chr4.1:57662721-57662740 | None:intergenic | 15.0% |
| !! | TTTAAACATATTGTTAACAT+GGG | + | chr4.1:57664116-57664135 | MS.gene71150:CDS | 15.0% |
| !!! | AAATAATTTTGAATGCTTAA+TGG | - | chr4.1:57664054-57664073 | None:intergenic | 15.0% |
| !!! | AAATCATTTTTTAGAAAAAG+TGG | + | chr4.1:57662943-57662962 | MS.gene71150:intron | 15.0% |
| !!! | ATTTTTTTTTAAATACAAGC+AGG | + | chr4.1:57663187-57663206 | MS.gene71150:intron | 15.0% |
| !!! | TAATTGAAATCCTAATTTTT+TGG | - | chr4.1:57662678-57662697 | None:intergenic | 15.0% |
| !! | AAAATAATATATGCAAGGTT+CGG | + | chr4.1:57663019-57663038 | MS.gene71150:intron | 20.0% |
| !! | AGAAAAAAATTGAAACTAAC+GGG | - | chr4.1:57662720-57662739 | None:intergenic | 20.0% |
| !! | ATCCATAACATAATATAGAA+TGG | - | chr4.1:57661807-57661826 | None:intergenic | 20.0% |
| !! | TAACATAATATAGAATGGAA+TGG | - | chr4.1:57661802-57661821 | None:intergenic | 20.0% |
| !! | TAATCAAAATTGAGAATTTG+AGG | - | chr4.1:57662631-57662650 | None:intergenic | 20.0% |
| !! | TATTGTTATGTTTATTGGTA+AGG | + | chr4.1:57663393-57663412 | MS.gene71150:intron | 20.0% |
| !! | TTAAACATATTGTTAACATG+GGG | + | chr4.1:57664117-57664136 | MS.gene71150:CDS | 20.0% |
| !! | TTCCATTCTATATTATGTTA+TGG | + | chr4.1:57661802-57661821 | MS.gene71150:intron | 20.0% |
| !!! | GATTCTAAAAAAAAATTCTG+AGG | - | chr4.1:57663270-57663289 | None:intergenic | 20.0% |
| !!! | TTATAATGGATTACAAATTC+AGG | + | chr4.1:57662536-57662555 | MS.gene71150:intron | 20.0% |
| !!! | TTATGCATTTTTTTGTTTTG+TGG | - | chr4.1:57662871-57662890 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTTTTTTGGTGG+TGG | - | chr4.1:57662924-57662943 | None:intergenic | 20.0% |
| ! | ACACTGATGTATGATTATAA+TGG | + | chr4.1:57662522-57662541 | MS.gene71150:intron | 25.0% |
| ! | AGTTATTGACAAATGATTAG+TGG | - | chr4.1:57663946-57663965 | None:intergenic | 25.0% |
| ! | CAAAAGAAAGATAAAGACTT+TGG | - | chr4.1:57662019-57662038 | None:intergenic | 25.0% |
| ! | GAAAAAAATTGAAACTAACG+GGG | - | chr4.1:57662719-57662738 | None:intergenic | 25.0% |
| ! | GTTATTGACAAATGATTAGT+GGG | - | chr4.1:57663945-57663964 | None:intergenic | 25.0% |
| ! | TAAAACAATATGCACAAATC+AGG | + | chr4.1:57662481-57662500 | MS.gene71150:intron | 25.0% |
| ! | TAAACATATTGTTAACATGG+GGG | + | chr4.1:57664118-57664137 | MS.gene71150:CDS | 25.0% |
| ! | TAATTATTACTAATGGGACT+CGG | - | chr4.1:57663603-57663622 | None:intergenic | 25.0% |
| ! | TCTACTTGGTTAACAAAATT+TGG | - | chr4.1:57662390-57662409 | None:intergenic | 25.0% |
| ! | TCTTATATATTGCTTCTACT+TGG | - | chr4.1:57662404-57662423 | None:intergenic | 25.0% |
| ! | TGCATAATATATGCAATGTT+CGG | + | chr4.1:57662884-57662903 | MS.gene71150:intron | 25.0% |
| !! | AATTTTGAATGCTTAATGGA+TGG | - | chr4.1:57664050-57664069 | None:intergenic | 25.0% |
| !!! | ATTTAATTTTCTGCTCCTTA+TGG | + | chr4.1:57662159-57662178 | MS.gene71150:intron | 25.0% |
| !!! | TTTAATTTTCTGCTCCTTAT+GGG | + | chr4.1:57662160-57662179 | MS.gene71150:intron | 25.0% |
| AAACATATTGTTAACATGGG+GGG | + | chr4.1:57664119-57664138 | MS.gene71150:CDS | 30.0% | |
| AATGGAACTCACTTAATGAT+AGG | - | chr4.1:57663530-57663549 | None:intergenic | 30.0% | |
| AGAAATTTGTGCATGCTAAA+TGG | - | chr4.1:57663913-57663932 | None:intergenic | 30.0% | |
| AGAAGCAATATATAAGAGTG+AGG | + | chr4.1:57662407-57662426 | MS.gene71150:CDS | 30.0% | |
| ATCTCTCCAAATGAAAGAAT+TGG | + | chr4.1:57663658-57663677 | MS.gene71150:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4.1:57662823-57662842 | MS.gene71150:intron | 30.0% | |
| GTTACAATTATCTTGATGTG+AGG | + | chr4.1:57661932-57661951 | MS.gene71150:CDS | 30.0% | |
| TCATCTCCAATTCTTTCATT+TGG | - | chr4.1:57663667-57663686 | None:intergenic | 30.0% | |
| TGATGTGAGGTAATTAACAA+AGG | + | chr4.1:57661945-57661964 | MS.gene71150:intron | 30.0% | |
| TGCATAATATATGCAAGGTT+CGG | + | chr4.1:57662828-57662847 | MS.gene71150:intron | 30.0% | |
| TTGTGTATGTTGAAGTTACA+TGG | - | chr4.1:57663737-57663756 | None:intergenic | 30.0% | |
| ! | AATCCATTTTGTGTACGTAA+TGG | + | chr4.1:57663814-57663833 | MS.gene71150:intron | 30.0% |
| ! | AATTCTGATTGAGCATCTTT+TGG | - | chr4.1:57662271-57662290 | None:intergenic | 30.0% |
| ! | ATCCATTTTGTGTACGTAAT+GGG | + | chr4.1:57663815-57663834 | MS.gene71150:intron | 30.0% |
| ! | CAAAATTGAGAATTTGAGGT+TGG | - | chr4.1:57662627-57662646 | None:intergenic | 30.0% |
| ! | TTTCTTTTGTCCACTGAAAT+AGG | + | chr4.1:57662030-57662049 | MS.gene71150:intron | 30.0% |
| !!! | TGCATTTTTTTGTTTTGTGG+TGG | - | chr4.1:57662868-57662887 | None:intergenic | 30.0% |
| AAAGATCTGCTAGATTCATC+TGG | + | chr4.1:57661910-57661929 | MS.gene71150:CDS | 35.0% | |
| AGATGAATCTAGCAGATCTT+TGG | - | chr4.1:57661911-57661930 | None:intergenic | 35.0% | |
| CGTTAATAGCATTCTCAACA+TGG | - | chr4.1:57662079-57662098 | None:intergenic | 35.0% | |
| GATGTTGTAATTAACGAGCA+GGG | + | chr4.1:57664092-57664111 | MS.gene71150:intron | 35.0% | |
| GTCATAGACTTACCGAATTA+TGG | - | chr4.1:57662605-57662624 | None:intergenic | 35.0% | |
| TATTTGTTCAGCACAGAAGA+AGG | + | chr4.1:57662104-57662123 | MS.gene71150:CDS | 35.0% | |
| TCTTCTGTGCTGAACAAATA+GGG | - | chr4.1:57662104-57662123 | None:intergenic | 35.0% | |
| TGATGTTGTAATTAACGAGC+AGG | + | chr4.1:57664091-57664110 | MS.gene71150:intron | 35.0% | |
| TTCTTCTGTGCTGAACAAAT+AGG | - | chr4.1:57662105-57662124 | None:intergenic | 35.0% | |
| TTGAAACTCTTACTCCTTTG+TGG | - | chr4.1:57661772-57661791 | None:intergenic | 35.0% | |
| ! | CAAAATGGATTTCTCTATCG+TGG | - | chr4.1:57663805-57663824 | None:intergenic | 35.0% |
| ! | TCTATCGTGGATGCTTTTAA+TGG | - | chr4.1:57663792-57663811 | None:intergenic | 35.0% |
| ! | TTGAATGCTTAATGGATGGA+GGG | - | chr4.1:57664046-57664065 | None:intergenic | 35.0% |
| ! | TTTGAATGCTTAATGGATGG+AGG | - | chr4.1:57664047-57664066 | None:intergenic | 35.0% |
| !!! | AAATTTTTTTTGGTGGTGGC+CGG | - | chr4.1:57662920-57662939 | None:intergenic | 35.0% |
| !!! | TTTTTTTGTTTTGTGGTGGC+CGG | - | chr4.1:57662864-57662883 | None:intergenic | 35.0% |
| AAAAAGTGGAGTTCGAATCC+CGG | + | chr4.1:57662957-57662976 | MS.gene71150:intron | 40.0% | |
| CAAATTCAGGCTTGTAATGC+TGG | + | chr4.1:57662549-57662568 | MS.gene71150:intron | 40.0% | |
| CAGCACAGAAGAAGGTAATA+TGG | + | chr4.1:57662112-57662131 | MS.gene71150:intron | 40.0% | |
| CTTACAACTGATCAACAGGA+CGG | + | chr4.1:57662355-57662374 | MS.gene71150:intron | 40.0% | |
| GACCCATTACGTACACAAAA+TGG | - | chr4.1:57663820-57663839 | None:intergenic | 40.0% | |
| GAGTGAGGATCACTTAATTG+TGG | + | chr4.1:57662422-57662441 | MS.gene71150:CDS | 40.0% | |
| TAGCTAGCGATAAACGAGTT+AGG | - | chr4.1:57663702-57663721 | None:intergenic | 40.0% | |
| TGTGCTTACAACTGATCAAC+AGG | + | chr4.1:57662351-57662370 | MS.gene71150:intron | 40.0% | |
| TTACAACTGATCAACAGGAC+GGG | + | chr4.1:57662356-57662375 | MS.gene71150:intron | 40.0% | |
| ! | GACAAATGATTAGTGGGTCT+GGG | - | chr4.1:57663939-57663958 | None:intergenic | 40.0% |
| ! | TGACAAATGATTAGTGGGTC+TGG | - | chr4.1:57663940-57663959 | None:intergenic | 40.0% |
| ! | TTTGGTAGCATGGACATCTA+AGG | - | chr4.1:57661893-57661912 | None:intergenic | 40.0% |
| !! | CTGGGTTGATCTCCATAATT+CGG | + | chr4.1:57662590-57662609 | MS.gene71150:CDS | 40.0% |
| !!! | AATTTTTTTTGGTGGTGGCC+GGG | - | chr4.1:57662919-57662938 | None:intergenic | 40.0% |
| !!! | CTTGTTTTAAGCTCTTCTGC+AGG | - | chr4.1:57664191-57664210 | None:intergenic | 40.0% |
| !!! | TTTTTTGTTTTGTGGTGGCC+GGG | - | chr4.1:57662863-57662882 | None:intergenic | 40.0% |
| AATGTTCGGAGTTCGAATCC+CGG | + | chr4.1:57662898-57662917 | MS.gene71150:intron | 45.0% | |
| ATTCAGGCTTGTAATGCTGG+AGG | + | chr4.1:57662552-57662571 | MS.gene71150:intron | 45.0% | |
| CATATTGTTAACATGGGGGG+AGG | + | chr4.1:57664122-57664141 | MS.gene71150:CDS | 45.0% | |
| CGAATTATGGAGATCAACCC+AGG | - | chr4.1:57662592-57662611 | None:intergenic | 45.0% | |
| CTCGTTTATCGCTAGCTAAG+TGG | + | chr4.1:57663704-57663723 | MS.gene71150:intron | 45.0% | |
| TACCAAGTGAGCTAAGCTCA+CGG | - | chr4.1:57662801-57662820 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCACTTGGTA+AGG | + | chr4.1:57662801-57662820 | MS.gene71150:intron | 45.0% | |
| TGTCCACTGAAATAGGACTG+TGG | + | chr4.1:57662037-57662056 | MS.gene71150:intron | 45.0% | |
| TGTTGCTACCTCTACCCATA+AGG | - | chr4.1:57662177-57662196 | None:intergenic | 45.0% | |
| TTTCTGCTCCTTATGGGTAG+AGG | + | chr4.1:57662166-57662185 | MS.gene71150:intron | 45.0% | |
| ! | CTAGCAGATCTTTGGTAGCA+TGG | - | chr4.1:57661903-57661922 | None:intergenic | 45.0% |
| ! | TTAAAGAGGCGTAAGACGCA+CGG | + | chr4.1:57663997-57664016 | MS.gene71150:intron | 45.0% |
| !! | GTGTACGTAATGGGTCTCAT+GGG | + | chr4.1:57663824-57663843 | MS.gene71150:intron | 45.0% |
| !! | TGTGTACGTAATGGGTCTCA+TGG | + | chr4.1:57663823-57663842 | MS.gene71150:intron | 45.0% |
| !! | AAAATAAAAAAAAAACTATT+AGG | + | chr4.1:57663148-57663167 | MS.gene71150:intron | 5.0% |
| !! | AATTATCTTAATTTAAATTT+AGG | + | chr4.1:57662693-57662712 | MS.gene71150:intron | 5.0% |
| !!! | AATTATTCATTTATTTTAAA+TGG | - | chr4.1:57663430-57663449 | None:intergenic | 5.0% |
| !!! | ATGATTTTTTAAATTTTTTT+TGG | - | chr4.1:57662930-57662949 | None:intergenic | 5.0% |
| !!! | ATTTAAAAAAAAATAGATTT+TGG | - | chr4.1:57663181-57663200 | None:intergenic | 5.0% |
| !!! | TGATTTTTTTAAATTTTTTT+TGG | - | chr4.1:57663098-57663117 | None:intergenic | 5.0% |
| !!! | TTTAAAAAAAAATAGATTTT+GGG | - | chr4.1:57663180-57663199 | None:intergenic | 5.0% |
| AAGGTTCGGAGTTCGAATCC+CGG | + | chr4.1:57662842-57662861 | MS.gene71150:intron | 50.0% | |
| AAGGTTCGGAGTTCGTATCC+CGG | + | chr4.1:57663066-57663085 | MS.gene71150:intron | 50.0% | |
| ACCAAGTGAGCTAAGCTCAC+GGG | - | chr4.1:57662800-57662819 | None:intergenic | 50.0% | |
| AGGAAGATCAAGTCGAGCCT+GGG | + | chr4.1:57662572-57662591 | MS.gene71150:CDS | 50.0% | |
| CCACTGAAATAGGACTGTGG+AGG | + | chr4.1:57662040-57662059 | MS.gene71150:intron | 50.0% | |
| CCTCCACAGTCCTATTTCAG+TGG | - | chr4.1:57662043-57662062 | None:intergenic | 50.0% | |
| CCAAGTGAGCTAAGCTCACG+GGG | - | chr4.1:57662799-57662818 | None:intergenic | 55.0% | |
| GAGGAAGATCAAGTCGAGCC+TGG | + | chr4.1:57662571-57662590 | MS.gene71150:CDS | 55.0% | |
| TGGGTGGATGCTGGATTTGC+AGG | + | chr4.1:57664155-57664174 | MS.gene71150:CDS | 55.0% | |
| CCCCGTGAGCTTAGCTCACT+TGG | + | chr4.1:57662796-57662815 | MS.gene71150:intron | 60.0% | |
| TACTCTGCGTGGGTGGATGC+TGG | + | chr4.1:57664146-57664165 | MS.gene71150:CDS | 60.0% | |
| GGGAGGCTACTCTGCGTGGG+TGG | + | chr4.1:57664139-57664158 | MS.gene71150:CDS | 70.0% | |
| GGGGGGAGGCTACTCTGCGT+GGG | + | chr4.1:57664136-57664155 | MS.gene71150:CDS | 70.0% | |
| TGGGGGGAGGCTACTCTGCG+TGG | + | chr4.1:57664135-57664154 | MS.gene71150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 57661762 | 57664229 | 57661762 | ID=MS.gene71150 |
| chr4.1 | mRNA | 57661762 | 57664229 | 57661762 | ID=MS.gene71150.t1;Parent=MS.gene71150 |
| chr4.1 | exon | 57661762 | 57661778 | 57661762 | ID=MS.gene71150.t1.exon1;Parent=MS.gene71150.t1 |
| chr4.1 | CDS | 57661762 | 57661778 | 57661762 | ID=cds.MS.gene71150.t1;Parent=MS.gene71150.t1 |
| chr4.1 | exon | 57661873 | 57661953 | 57661873 | ID=MS.gene71150.t1.exon2;Parent=MS.gene71150.t1 |
| chr4.1 | CDS | 57661873 | 57661953 | 57661873 | ID=cds.MS.gene71150.t1;Parent=MS.gene71150.t1 |
| chr4.1 | exon | 57662052 | 57662125 | 57662052 | ID=MS.gene71150.t1.exon3;Parent=MS.gene71150.t1 |
| chr4.1 | CDS | 57662052 | 57662125 | 57662052 | ID=cds.MS.gene71150.t1;Parent=MS.gene71150.t1 |
| chr4.1 | exon | 57662373 | 57662443 | 57662373 | ID=MS.gene71150.t1.exon4;Parent=MS.gene71150.t1 |
| chr4.1 | CDS | 57662373 | 57662443 | 57662373 | ID=cds.MS.gene71150.t1;Parent=MS.gene71150.t1 |
| chr4.1 | exon | 57662558 | 57662611 | 57662558 | ID=MS.gene71150.t1.exon5;Parent=MS.gene71150.t1 |
| chr4.1 | CDS | 57662558 | 57662611 | 57662558 | ID=cds.MS.gene71150.t1;Parent=MS.gene71150.t1 |
| chr4.1 | exon | 57664113 | 57664229 | 57664113 | ID=MS.gene71150.t1.exon6;Parent=MS.gene71150.t1 |
| chr4.1 | CDS | 57664113 | 57664229 | 57664113 | ID=cds.MS.gene71150.t1;Parent=MS.gene71150.t1 |
| Gene Sequence |
| Protein sequence |
