Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72121.t1 | XP_013447053.1 | 93.4 | 425 | 22 | 2 | 1 | 422 | 9 | 430 | 2.10E-120 | 442.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72121.t1 | Q9SZL5 | 57.8 | 102 | 28 | 2 | 189 | 290 | 84 | 170 | 2.5e-21 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72121.t1 | A0A072U5E3 | 93.4 | 425 | 22 | 2 | 1 | 422 | 9 | 430 | 1.5e-120 | 442.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene72121 | 0.811835 | 5.74E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene72121 | 0.819923 | 9.00E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene72121 | 0.820395 | 7.02E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene72121 | 0.817632 | 2.98E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene72121 | 0.83361 | 4.83E-56 | -1.69E-46 |
| MS.gene050808 | MS.gene72121 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene72121 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene72121 | 0.804184 | 2.44E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene72121 | 0.833963 | 3.94E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene72121 | 0.834749 | 2.50E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene72121 | 0.823387 | 1.42E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene72121 | 0.807929 | 3.98E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene72121 | 0.802008 | 6.88E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene72121 | 0.848559 | 5.67E-60 | -1.69E-46 |
| MS.gene052879 | MS.gene72121 | 0.803009 | 4.28E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene72121 | 0.822339 | 2.50E-53 | -1.69E-46 |
| MS.gene053221 | MS.gene72121 | 0.802671 | 5.02E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene72121 | 0.805683 | 1.19E-49 | -1.69E-46 |
| MS.gene053599 | MS.gene72121 | 0.825004 | 5.94E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene72121 | 0.827776 | 1.30E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene72121 | 0.808606 | 2.85E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene72121 | 0.815806 | 7.66E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene72121 | 0.825295 | 5.07E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene72121 | 0.845411 | 4.13E-59 | -1.69E-46 |
| MS.gene055580 | MS.gene72121 | -0.830913 | 2.25E-55 | -1.69E-46 |
| MS.gene055890 | MS.gene72121 | 0.806197 | 9.25E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene72121 | 0.83007 | 3.61E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene72121 | -0.822475 | 2.32E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene72121 | 0.815008 | 1.15E-51 | -1.69E-46 |
| MS.gene056642 | MS.gene72121 | 0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene057287 | MS.gene72121 | 0.800441 | 1.44E-48 | -1.69E-46 |
| MS.gene057705 | MS.gene72121 | 0.805462 | 1.32E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene72121 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene058982 | MS.gene72121 | 0.80098 | 1.12E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene72121 | 0.819057 | 1.42E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene72121 | 0.813532 | 2.44E-51 | -1.69E-46 |
| MS.gene060194 | MS.gene72121 | 0.806154 | 9.44E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene72121 | 0.847006 | 1.52E-59 | -1.69E-46 |
| MS.gene060619 | MS.gene72121 | 0.821885 | 3.18E-53 | -1.69E-46 |
| MS.gene061176 | MS.gene72121 | 0.82229 | 2.56E-53 | -1.69E-46 |
| MS.gene061177 | MS.gene72121 | 0.822716 | 2.04E-53 | -1.69E-46 |
| MS.gene061178 | MS.gene72121 | 0.821857 | 3.23E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCTAATTTATTTAAAA+TGG | 0.144535 | 4.2:+6230289 | None:intergenic |
| GCAAATTGGTCTTGGATTTC+AGG | 0.164548 | 4.2:-6231121 | MS.gene72121:CDS |
| AAATTTGCTTAGAATTTAAA+AGG | 0.213710 | 4.2:+6231523 | None:intergenic |
| TCCATTTGGGAGGCCATCTT+TGG | 0.260119 | 4.2:-6230331 | MS.gene72121:CDS |
| GACAATAAATCTTCGCAAAT+TGG | 0.296101 | 4.2:-6231135 | MS.gene72121:CDS |
| GGTTATCATTAAAGCTAAAA+TGG | 0.297998 | 4.2:+6231475 | None:intergenic |
| ATTCTCCGGCAGCAGCTTTA+CGG | 0.324844 | 4.2:+6231445 | None:intergenic |
| GGTGTTATCAAGACATTAAC+AGG | 0.334603 | 4.2:-6230421 | MS.gene72121:CDS |
| ACTTTCGTTGGCTTGGTAGA+TGG | 0.335096 | 4.2:-6230478 | MS.gene72121:CDS |
| GGATTTCAGGGTAGAAATAT+TGG | 0.336407 | 4.2:-6231108 | MS.gene72121:CDS |
| CCGACCTTGCTTCTTCCAAT+TGG | 0.341967 | 4.2:+6230911 | None:intergenic |
| AAATCTTCGCAAATTGATCT+TGG | 0.348578 | 4.2:-6231060 | MS.gene72121:CDS |
| TCCCAAATGGAGGGTGAAAA+TGG | 0.351854 | 4.2:+6230343 | None:intergenic |
| AATAGAAATGAGGAAGGTTT+TGG | 0.354510 | 4.2:-6231366 | MS.gene72121:CDS |
| CTACAAATGTAGCAGATTAC+AGG | 0.354953 | 4.2:-6230557 | MS.gene72121:CDS |
| GGAAGAAATGTTGATGAAAC+TGG | 0.365594 | 4.2:-6231177 | MS.gene72121:CDS |
| GGCCACCTCGATCATATTCT+TGG | 0.366307 | 4.2:+6231262 | None:intergenic |
| AAATCTTCGCAAATTGGTCT+TGG | 0.367816 | 4.2:-6231129 | MS.gene72121:CDS |
| GCGGGAAAAGGGAACGATTC+CGG | 0.377445 | 4.2:-6230719 | MS.gene72121:CDS |
| ACAAGGCTGATGATGCTATA+AGG | 0.384180 | 4.2:-6230651 | MS.gene72121:CDS |
| AGATCGTCGCAAATTGATCT+TGG | 0.387206 | 4.2:-6231207 | MS.gene72121:CDS |
| CAAATTGATCTTGGATTTCA+AGG | 0.391395 | 4.2:-6231198 | MS.gene72121:CDS |
| CCATTTGGGAGGCCATCTTT+GGG | 0.392463 | 4.2:-6230330 | MS.gene72121:CDS |
| TGCAAAGTAGGTTGATTACT+TGG | 0.392764 | 4.2:+6231288 | None:intergenic |
| TTCAAGAAGATGAAGGAAAC+TGG | 0.393436 | 4.2:-6230826 | MS.gene72121:CDS |
| CGTAGGGTTAATAAATTTGA+AGG | 0.400547 | 4.2:-6231555 | None:intergenic |
| AATGCAGTGGCTATGCTTGA+TGG | 0.408634 | 4.2:-6230793 | MS.gene72121:CDS |
| CGGAGGAATTGAATCAAACT+AGG | 0.410333 | 4.2:-6231329 | MS.gene72121:CDS |
| ATCAAGACATTAACAGGAAA+GGG | 0.416729 | 4.2:-6230415 | MS.gene72121:CDS |
| TCAAGCATAGCCACTGCATT+AGG | 0.418952 | 4.2:+6230796 | None:intergenic |
| TTTCGGTTTGATGCGGGAAA+AGG | 0.419906 | 4.2:-6230731 | MS.gene72121:CDS |
| GATAGAGATGGTGGTCAGTC+AGG | 0.420393 | 4.2:-6231009 | MS.gene72121:CDS |
| AGACTGTTGCGCTGGTTCAT+TGG | 0.421003 | 4.2:+6230873 | None:intergenic |
| GCAAATTGATCTTGGACCTC+AGG | 0.428080 | 4.2:-6231052 | MS.gene72121:CDS |
| TGGAGCTTTCTTCCCAAAGA+TGG | 0.431489 | 4.2:+6230318 | None:intergenic |
| GGCCGTCGTCTGAAATTTGA+TGG | 0.445178 | 4.2:-6231243 | MS.gene72121:CDS |
| TGTTGAAGCAAGCAGCCAAT+TGG | 0.445648 | 4.2:-6230926 | MS.gene72121:CDS |
| ACAGTGTAACTAAAAGCATT+TGG | 0.453156 | 4.2:+6230595 | None:intergenic |
| AAATTCATCGTCAGATTCTC+CGG | 0.459652 | 4.2:+6231431 | None:intergenic |
| CCCAAAGATGGCCTCCCAAA+TGG | 0.461784 | 4.2:+6230330 | None:intergenic |
| CAAATTGGTCTTGGATTTCA+GGG | 0.467586 | 4.2:-6231120 | MS.gene72121:CDS |
| TTTATTTAAAATGGCATCTG+TGG | 0.474744 | 4.2:+6230298 | None:intergenic |
| GGTAGAAATATTGGTAGAGA+TGG | 0.476528 | 4.2:-6231099 | MS.gene72121:CDS |
| TTCGGTTTGATGCGGGAAAA+GGG | 0.484486 | 4.2:-6230730 | MS.gene72121:CDS |
| TTTCTCGATAAGTATAAGCT+TGG | 0.496796 | 4.2:-6230979 | MS.gene72121:CDS |
| AGTTACACTGTTCTTATACA+AGG | 0.499632 | 4.2:-6230583 | MS.gene72121:CDS |
| AATGGAATTGAAGAAGCAAA+AGG | 0.499894 | 4.2:-6230442 | MS.gene72121:CDS |
| CTTGATGGTTTATGTAAAGA+TGG | 0.502179 | 4.2:-6230778 | MS.gene72121:CDS |
| TATTCTTGGGAATGCAAAGT+AGG | 0.503706 | 4.2:+6231276 | None:intergenic |
| GCCACCTCGATCATATTCTT+GGG | 0.507961 | 4.2:+6231263 | None:intergenic |
| GCAGTGTAAATGACAATCTC+CGG | 0.509766 | 4.2:+6230700 | None:intergenic |
| TGTGTAGAGATGTTAGAAGC+AGG | 0.515949 | 4.2:-6230520 | MS.gene72121:CDS |
| AGAAATATTGGTAGAGATGG+TGG | 0.517152 | 4.2:-6231096 | MS.gene72121:CDS |
| TTCAGGAAAATGCAGAGTAA+TGG | 0.518339 | 4.2:-6230625 | MS.gene72121:CDS |
| GGTAGAGATGGTGGTCGTCT+TGG | 0.520100 | 4.2:-6231087 | MS.gene72121:CDS |
| CTAAATGTGACGACTTTCGT+TGG | 0.535206 | 4.2:-6230490 | MS.gene72121:CDS |
| TATCAAGACATTAACAGGAA+AGG | 0.535590 | 4.2:-6230416 | MS.gene72121:CDS |
| TGTGACGACTTTCGTTGGCT+TGG | 0.537500 | 4.2:-6230485 | MS.gene72121:CDS |
| TGTCATTTACACTGCTGTAG+TGG | 0.538969 | 4.2:-6230692 | MS.gene72121:CDS |
| AAGTCGTCACATTTAGAGAA+TGG | 0.539449 | 4.2:+6230497 | None:intergenic |
| AATTTGCTTAGAATTTAAAA+GGG | 0.543930 | 4.2:+6231524 | None:intergenic |
| CATTTACACTGCTGTAGTGG+AGG | 0.556135 | 4.2:-6230689 | MS.gene72121:CDS |
| CATCTTCTTGAAAATCTCAT+CGG | 0.558879 | 4.2:+6230837 | None:intergenic |
| GGAGGAATTGAATCAAACTA+GGG | 0.561115 | 4.2:-6231328 | MS.gene72121:CDS |
| CAAATTGATCTTGGACCTCA+GGG | 0.562191 | 4.2:-6231051 | MS.gene72121:CDS |
| GTAGGGTTAATAAATTTGAA+GGG | 0.580948 | 4.2:-6231554 | None:intergenic |
| TTCCATCAAATTTCAGACGA+CGG | 0.581614 | 4.2:+6231241 | None:intergenic |
| GGTGGCCGTAAAGCTGCTGC+CGG | 0.589710 | 4.2:-6231450 | MS.gene72121:CDS |
| TGAGGCATAGACTGTTGCGC+TGG | 0.594878 | 4.2:+6230865 | None:intergenic |
| AAAATCTCATCGGCATCTTG+AGG | 0.595281 | 4.2:+6230847 | None:intergenic |
| AAAGATGGCCTCCCAAATGG+AGG | 0.600846 | 4.2:+6230333 | None:intergenic |
| TAATGGTGGCAATAGAAATG+AGG | 0.601499 | 4.2:-6231376 | MS.gene72121:CDS |
| GGTGGCAATAGAAATGAGGA+AGG | 0.603306 | 4.2:-6231372 | MS.gene72121:CDS |
| GATGAAACTGGTAGAGATGT+TGG | 0.605069 | 4.2:-6231165 | MS.gene72121:CDS |
| GGGATACACAAAGGCACACA+AGG | 0.605565 | 4.2:-6230668 | MS.gene72121:CDS |
| CCAATTGGAAGAAGCAAGGT+CGG | 0.609013 | 4.2:-6230911 | MS.gene72121:CDS |
| ATTTACACTGCTGTAGTGGA+GGG | 0.610371 | 4.2:-6230688 | MS.gene72121:CDS |
| AGCTTTAATGATAACCGTGG+TGG | 0.616814 | 4.2:-6231468 | MS.gene72121:CDS |
| TTTAGCTTTAATGATAACCG+TGG | 0.626517 | 4.2:-6231471 | MS.gene72121:CDS |
| TGGTCTTATACCTAATGCAG+TGG | 0.628103 | 4.2:-6230806 | MS.gene72121:CDS |
| CTGAAATTTGATGGAAACCG+TGG | 0.629200 | 4.2:-6231234 | MS.gene72121:CDS |
| TGGTGTTCAACAACGTTCGG+AGG | 0.633034 | 4.2:-6231346 | MS.gene72121:CDS |
| TGGCGCATAGTAATAAGCCA+TGG | 0.634452 | 4.2:+6231495 | None:intergenic |
| GCAGCCAATTGGAAGAAGCA+AGG | 0.638935 | 4.2:-6230915 | MS.gene72121:CDS |
| AAGATGGCCTCCCAAATGGA+GGG | 0.652997 | 4.2:+6230334 | None:intergenic |
| CAGCAGCTTTACGGCCACCA+CGG | 0.657023 | 4.2:+6231454 | None:intergenic |
| TTTGCGACGATCTATTGCCA+CGG | 0.672402 | 4.2:+6231217 | None:intergenic |
| CATTCCCAAGAATATGATCG+AGG | 0.673598 | 4.2:-6231267 | MS.gene72121:CDS |
| TCAGCAACATTTCTACCCTG+AGG | 0.676686 | 4.2:+6231036 | None:intergenic |
| GTTGCTGAAACTGATAGAGA+TGG | 0.677713 | 4.2:-6231021 | MS.gene72121:CDS |
| GCTGAAACTGATAGAGATGG+TGG | 0.693019 | 4.2:-6231018 | MS.gene72121:CDS |
| TCCCAAGAATATGATCGAGG+TGG | 0.704327 | 4.2:-6231264 | MS.gene72121:CDS |
| TGTAGTGGAGGGATACACAA+AGG | 0.712002 | 4.2:-6230677 | MS.gene72121:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGCTTAGAATTTAAA+AGG | + | chr4.2:6230333-6230352 | None:intergenic | 15.0% |
| !!! | AATTTGCTTAGAATTTAAAA+GGG | + | chr4.2:6230332-6230351 | None:intergenic | 15.0% |
| ! | GGTTATCATTAAAGCTAAAA+TGG | + | chr4.2:6230381-6230400 | None:intergenic | 25.0% |
| !!! | ATGAGTTTTAATGATAATGG+TGG | - | chr4.2:6230463-6230482 | MS.gene72121:CDS | 25.0% |
| !!! | GACATGAGTTTTAATGATAA+TGG | - | chr4.2:6230460-6230479 | MS.gene72121:CDS | 25.0% |
| AAATCTTCGCAAATTGATCT+TGG | - | chr4.2:6230793-6230812 | MS.gene72121:CDS | 30.0% | |
| AATGGAATTGAAGAAGCAAA+AGG | - | chr4.2:6231411-6231430 | MS.gene72121:CDS | 30.0% | |
| AGTTACACTGTTCTTATACA+AGG | - | chr4.2:6231270-6231289 | MS.gene72121:CDS | 30.0% | |
| ATCAAGACATTAACAGGAAA+GGG | - | chr4.2:6231438-6231457 | MS.gene72121:CDS | 30.0% | |
| CAAATTGATCTTGGATTTCA+AGG | - | chr4.2:6230655-6230674 | MS.gene72121:CDS | 30.0% | |
| CATCTTCTTGAAAATCTCAT+CGG | + | chr4.2:6231019-6231038 | None:intergenic | 30.0% | |
| GACAATAAATCTTCGCAAAT+TGG | - | chr4.2:6230718-6230737 | MS.gene72121:CDS | 30.0% | |
| TATCAAGACATTAACAGGAA+AGG | - | chr4.2:6231437-6231456 | MS.gene72121:CDS | 30.0% | |
| TTTCTCGATAAGTATAAGCT+TGG | - | chr4.2:6230874-6230893 | MS.gene72121:CDS | 30.0% | |
| ! | AATAGAAATGAGGAAGGTTT+TGG | - | chr4.2:6230487-6230506 | MS.gene72121:CDS | 30.0% |
| ! | ATGATGCTATAAGGATTTTC+AGG | - | chr4.2:6231211-6231230 | MS.gene72121:CDS | 30.0% |
| ! | CTTGATGGTTTATGTAAAGA+TGG | - | chr4.2:6231075-6231094 | MS.gene72121:CDS | 30.0% |
| ! | GATGGTTTTTGCAAAGAAAA+TGG | - | chr4.2:6231393-6231412 | MS.gene72121:CDS | 30.0% |
| ! | TTTTGATGAGAAAGCTGTTA+GGG | - | chr4.2:6231467-6231486 | MS.gene72121:CDS | 30.0% |
| !! | ACAGTGTAACTAAAAGCATT+TGG | + | chr4.2:6231261-6231280 | None:intergenic | 30.0% |
| !! | TGAGATTTTCAAGAAGATGA+AGG | - | chr4.2:6231020-6231039 | MS.gene72121:CDS | 30.0% |
| !! | TTTAGCTTTAATGATAACCG+TGG | - | chr4.2:6230382-6230401 | MS.gene72121:CDS | 30.0% |
| !!! | ACGATGAATTTTTTCGTCAA+CGG | - | chr4.2:6230434-6230453 | MS.gene72121:CDS | 30.0% |
| !!! | TTGGTTTTGATGATGAAGTA+GGG | - | chr4.2:6230893-6230912 | MS.gene72121:CDS | 30.0% |
| AAATTCATCGTCAGATTCTC+CGG | + | chr4.2:6230425-6230444 | None:intergenic | 35.0% | |
| AAGTCGTCACATTTAGAGAA+TGG | + | chr4.2:6231359-6231378 | None:intergenic | 35.0% | |
| AGAAATATTGGTAGAGATGG+TGG | - | chr4.2:6230757-6230776 | MS.gene72121:CDS | 35.0% | |
| CTACAAATGTAGCAGATTAC+AGG | - | chr4.2:6231296-6231315 | MS.gene72121:CDS | 35.0% | |
| GGAGGAATTGAATCAAACTA+GGG | - | chr4.2:6230525-6230544 | MS.gene72121:CDS | 35.0% | |
| GGATTTCAGGGTAGAAATAT+TGG | - | chr4.2:6230745-6230764 | MS.gene72121:CDS | 35.0% | |
| GGTAGAAATATTGGTAGAGA+TGG | - | chr4.2:6230754-6230773 | MS.gene72121:CDS | 35.0% | |
| TAATGGTGGCAATAGAAATG+AGG | - | chr4.2:6230477-6230496 | MS.gene72121:CDS | 35.0% | |
| TATTCTTGGGAATGCAAAGT+AGG | + | chr4.2:6230580-6230599 | None:intergenic | 35.0% | |
| TTCAAGAAGATGAAGGAAAC+TGG | - | chr4.2:6231027-6231046 | MS.gene72121:CDS | 35.0% | |
| TTCAGGAAAATGCAGAGTAA+TGG | - | chr4.2:6231228-6231247 | MS.gene72121:CDS | 35.0% | |
| TTCCATCAAATTTCAGACGA+CGG | + | chr4.2:6230615-6230634 | None:intergenic | 35.0% | |
| ! | AAATCTTCGCAAATTGGTCT+TGG | - | chr4.2:6230724-6230743 | MS.gene72121:CDS | 35.0% |
| ! | CTAAGCAAATTTTGTCTCCA+TGG | - | chr4.2:6230341-6230360 | MS.gene72121:CDS | 35.0% |
| ! | CTTTTGATGAGAAAGCTGTT+AGG | - | chr4.2:6231466-6231485 | MS.gene72121:CDS | 35.0% |
| ! | GGAAGAAATGTTGATGAAAC+TGG | - | chr4.2:6230676-6230695 | MS.gene72121:CDS | 35.0% |
| ! | GGTGTTATCAAGACATTAAC+AGG | - | chr4.2:6231432-6231451 | MS.gene72121:CDS | 35.0% |
| !! | CAAATTGGTCTTGGATTTCA+GGG | - | chr4.2:6230733-6230752 | MS.gene72121:CDS | 35.0% |
| !! | TGCAAAGTAGGTTGATTACT+TGG | + | chr4.2:6230568-6230587 | None:intergenic | 35.0% |
| !!! | AATCAAACTAGGGTTTTGAG+AGG | - | chr4.2:6230535-6230554 | MS.gene72121:CDS | 35.0% |
| !!! | CAAGAAGCTTTGAAGCTTTT+CGG | - | chr4.2:6231105-6231124 | MS.gene72121:CDS | 35.0% |
| !!! | CGATGAATTTTTTCGTCAAC+GGG | - | chr4.2:6230435-6230454 | MS.gene72121:CDS | 35.0% |
| !!! | CTTGGTTTTGATGATGAAGT+AGG | - | chr4.2:6230892-6230911 | MS.gene72121:CDS | 35.0% |
| !!! | GATGAATTTTTTCGTCAACG+GGG | - | chr4.2:6230436-6230455 | MS.gene72121:CDS | 35.0% |
| !!! | TTTTGGTGTTCAACAACGTT+CGG | - | chr4.2:6230504-6230523 | MS.gene72121:CDS | 35.0% |
| AAAATCTCATCGGCATCTTG+AGG | + | chr4.2:6231009-6231028 | None:intergenic | 40.0% | |
| AGATCGTCGCAAATTGATCT+TGG | - | chr4.2:6230646-6230665 | MS.gene72121:CDS | 40.0% | |
| CAAATTGATCTTGGACCTCA+GGG | - | chr4.2:6230802-6230821 | MS.gene72121:CDS | 40.0% | |
| CATTCCCAAGAATATGATCG+AGG | - | chr4.2:6230586-6230605 | MS.gene72121:CDS | 40.0% | |
| CGGAGGAATTGAATCAAACT+AGG | - | chr4.2:6230524-6230543 | MS.gene72121:CDS | 40.0% | |
| CTAAATGTGACGACTTTCGT+TGG | - | chr4.2:6231363-6231382 | MS.gene72121:CDS | 40.0% | |
| CTGAAATTTGATGGAAACCG+TGG | - | chr4.2:6230619-6230638 | MS.gene72121:CDS | 40.0% | |
| GATGAAACTGGTAGAGATGT+TGG | - | chr4.2:6230688-6230707 | MS.gene72121:CDS | 40.0% | |
| GCAGTGTAAATGACAATCTC+CGG | + | chr4.2:6231156-6231175 | None:intergenic | 40.0% | |
| GTTGCTGAAACTGATAGAGA+TGG | - | chr4.2:6230832-6230851 | MS.gene72121:CDS | 40.0% | |
| TGTGTAGAGATGTTAGAAGC+AGG | - | chr4.2:6231333-6231352 | MS.gene72121:CDS | 40.0% | |
| ! | ACAAGGCTGATGATGCTATA+AGG | - | chr4.2:6231202-6231221 | MS.gene72121:CDS | 40.0% |
| ! | ACCATTTTCACCCTCCATTT+GGG | - | chr4.2:6231509-6231528 | MS.gene72121:CDS | 40.0% |
| ! | AGCTTTAATGATAACCGTGG+TGG | - | chr4.2:6230385-6230404 | MS.gene72121:CDS | 40.0% |
| ! | ATTTACACTGCTGTAGTGGA+GGG | - | chr4.2:6231165-6231184 | MS.gene72121:CDS | 40.0% |
| ! | TGTCATTTACACTGCTGTAG+TGG | - | chr4.2:6231161-6231180 | MS.gene72121:CDS | 40.0% |
| !! | GAAAGCTGTTAGGGTGTTTT+TGG | - | chr4.2:6231476-6231495 | MS.gene72121:CDS | 40.0% |
| !! | GCAAATTGGTCTTGGATTTC+AGG | - | chr4.2:6230732-6230751 | MS.gene72121:CDS | 40.0% |
| !! | TGAAGCTTTTCGGTTTGATG+CGG | - | chr4.2:6231115-6231134 | MS.gene72121:CDS | 40.0% |
| !! | TGGTCTTATACCTAATGCAG+TGG | - | chr4.2:6231047-6231066 | MS.gene72121:CDS | 40.0% |
| AATGCAGTGGCTATGCTTGA+TGG | - | chr4.2:6231060-6231079 | MS.gene72121:CDS | 45.0% | |
| CATTTACACTGCTGTAGTGG+AGG | - | chr4.2:6231164-6231183 | MS.gene72121:CDS | 45.0% | |
| CCAATTGGAAGAAGCAAGGT+CGG | - | chr4.2:6230942-6230961 | MS.gene72121:CDS | 45.0% | |
| GCAAATTGATCTTGGACCTC+AGG | - | chr4.2:6230801-6230820 | MS.gene72121:CDS | 45.0% | |
| GCCACCTCGATCATATTCTT+GGG | + | chr4.2:6230593-6230612 | None:intergenic | 45.0% | |
| GCTGAAACTGATAGAGATGG+TGG | - | chr4.2:6230835-6230854 | MS.gene72121:CDS | 45.0% | |
| GGTGGCAATAGAAATGAGGA+AGG | - | chr4.2:6230481-6230500 | MS.gene72121:CDS | 45.0% | |
| TCAAGCATAGCCACTGCATT+AGG | + | chr4.2:6231060-6231079 | None:intergenic | 45.0% | |
| TCAGCAACATTTCTACCCTG+AGG | + | chr4.2:6230820-6230839 | None:intergenic | 45.0% | |
| TCCCAAATGGAGGGTGAAAA+TGG | + | chr4.2:6231513-6231532 | None:intergenic | 45.0% | |
| TCCCAAGAATATGATCGAGG+TGG | - | chr4.2:6230589-6230608 | MS.gene72121:CDS | 45.0% | |
| TGGAGCTTTCTTCCCAAAGA+TGG | + | chr4.2:6231538-6231557 | None:intergenic | 45.0% | |
| TGGCGCATAGTAATAAGCCA+TGG | + | chr4.2:6230361-6230380 | None:intergenic | 45.0% | |
| TGTTGAAGCAAGCAGCCAAT+TGG | - | chr4.2:6230927-6230946 | MS.gene72121:CDS | 45.0% | |
| TTTGCGACGATCTATTGCCA+CGG | + | chr4.2:6230639-6230658 | None:intergenic | 45.0% | |
| ! | ATTTTCACCCTCCATTTGGG+AGG | - | chr4.2:6231512-6231531 | MS.gene72121:CDS | 45.0% |
| ! | CACCATTTTCACCCTCCATT+TGG | - | chr4.2:6231508-6231527 | MS.gene72121:CDS | 45.0% |
| ! | TGTAGTGGAGGGATACACAA+AGG | - | chr4.2:6231176-6231195 | MS.gene72121:CDS | 45.0% |
| ! | TTCGGTTTGATGCGGGAAAA+GGG | - | chr4.2:6231123-6231142 | MS.gene72121:CDS | 45.0% |
| ! | TTTCGGTTTGATGCGGGAAA+AGG | - | chr4.2:6231122-6231141 | MS.gene72121:CDS | 45.0% |
| !! | ACTTTCGTTGGCTTGGTAGA+TGG | - | chr4.2:6231375-6231394 | MS.gene72121:CDS | 45.0% |
| !! | GAAGCTTTTCGGTTTGATGC+GGG | - | chr4.2:6231116-6231135 | MS.gene72121:CDS | 45.0% |
| !!! | GCTCCACAGATGCCATTTTA+AGG | - | chr4.2:6231552-6231571 | MS.gene72121:CDS | 45.0% |
| AAAGATGGCCTCCCAAATGG+AGG | + | chr4.2:6231523-6231542 | None:intergenic | 50.0% | |
| AAGATGGCCTCCCAAATGGA+GGG | + | chr4.2:6231522-6231541 | None:intergenic | 50.0% | |
| ATTCTCCGGCAGCAGCTTTA+CGG | + | chr4.2:6230411-6230430 | None:intergenic | 50.0% | |
| CCATTTGGGAGGCCATCTTT+GGG | - | chr4.2:6231523-6231542 | MS.gene72121:CDS | 50.0% | |
| CCGACCTTGCTTCTTCCAAT+TGG | + | chr4.2:6230945-6230964 | None:intergenic | 50.0% | |
| GCAGCCAATTGGAAGAAGCA+AGG | - | chr4.2:6230938-6230957 | MS.gene72121:CDS | 50.0% | |
| GGCCACCTCGATCATATTCT+TGG | + | chr4.2:6230594-6230613 | None:intergenic | 50.0% | |
| TCCATTTGGGAGGCCATCTT+TGG | - | chr4.2:6231522-6231541 | MS.gene72121:CDS | 50.0% | |
| TGGTGTTCAACAACGTTCGG+AGG | - | chr4.2:6230507-6230526 | MS.gene72121:CDS | 50.0% | |
| ! | GATAGAGATGGTGGTCAGTC+AGG | - | chr4.2:6230844-6230863 | MS.gene72121:CDS | 50.0% |
| ! | GGCCGTCGTCTGAAATTTGA+TGG | - | chr4.2:6230610-6230629 | MS.gene72121:CDS | 50.0% |
| ! | GGGATACACAAAGGCACACA+AGG | - | chr4.2:6231185-6231204 | MS.gene72121:CDS | 50.0% |
| ! | TGTGACGACTTTCGTTGGCT+TGG | - | chr4.2:6231368-6231387 | MS.gene72121:CDS | 50.0% |
| !! | AGACTGTTGCGCTGGTTCAT+TGG | + | chr4.2:6230983-6231002 | None:intergenic | 50.0% |
| CCCAAAGATGGCCTCCCAAA+TGG | + | chr4.2:6231526-6231545 | None:intergenic | 55.0% | |
| GCGGGAAAAGGGAACGATTC+CGG | - | chr4.2:6231134-6231153 | MS.gene72121:CDS | 55.0% | |
| TGAGGCATAGACTGTTGCGC+TGG | + | chr4.2:6230991-6231010 | None:intergenic | 55.0% | |
| ! | GGTAGAGATGGTGGTCGTCT+TGG | - | chr4.2:6230766-6230785 | MS.gene72121:CDS | 55.0% |
| CAGCAGCTTTACGGCCACCA+CGG | + | chr4.2:6230402-6230421 | None:intergenic | 60.0% | |
| GGTGGCCGTAAAGCTGCTGC+CGG | - | chr4.2:6230403-6230422 | MS.gene72121:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6230303 | 6231572 | 6230303 | ID=MS.gene72121 |
| chr4.2 | mRNA | 6230303 | 6231572 | 6230303 | ID=MS.gene72121.t1;Parent=MS.gene72121 |
| chr4.2 | exon | 6230303 | 6231572 | 6230303 | ID=MS.gene72121.t1.exon1;Parent=MS.gene72121.t1 |
| chr4.2 | CDS | 6230303 | 6231572 | 6230303 | ID=cds.MS.gene72121.t1;Parent=MS.gene72121.t1 |
| Gene Sequence |
| Protein sequence |
