Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72621.t1 | XP_003619856.1 | 91.8 | 159 | 1 | 1 | 1 | 147 | 72 | 230 | 8.40E-77 | 296.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72621.t1 | Q9LE73 | 55.4 | 157 | 53 | 4 | 1 | 141 | 40 | 195 | 4.4e-42 | 172.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72621.t1 | G7KQ94 | 91.8 | 159 | 1 | 1 | 1 | 147 | 72 | 230 | 6.0e-77 | 296.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene72621 | 0.826475 | 2.66E-54 | -1.69E-46 |
| MS.gene049786 | MS.gene72621 | 0.81927 | 1.27E-52 | -1.69E-46 |
| MS.gene050253 | MS.gene72621 | 0.837385 | 5.36E-57 | -1.69E-46 |
| MS.gene050439 | MS.gene72621 | 0.80462 | 1.98E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene72621 | 0.812511 | 4.09E-51 | -1.69E-46 |
| MS.gene051490 | MS.gene72621 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene051492 | MS.gene72621 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene72621 | 0.836757 | 7.76E-57 | -1.69E-46 |
| MS.gene051935 | MS.gene72621 | 0.802387 | 5.75E-49 | -1.69E-46 |
| MS.gene052493 | MS.gene72621 | 0.805861 | 1.09E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene72621 | 0.806841 | 6.76E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene72621 | 0.83752 | 4.95E-57 | -1.69E-46 |
| MS.gene053340 | MS.gene72621 | 0.841114 | 5.78E-58 | -1.69E-46 |
| MS.gene05423 | MS.gene72621 | 0.80019 | 1.62E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene72621 | 0.813054 | 3.11E-51 | -1.69E-46 |
| MS.gene055313 | MS.gene72621 | 0.823863 | 1.10E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene72621 | 0.817153 | 3.82E-52 | -1.69E-46 |
| MS.gene056068 | MS.gene72621 | 0.801029 | 1.09E-48 | -1.69E-46 |
| MS.gene056901 | MS.gene72621 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene72621 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene057155 | MS.gene72621 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene72621 | 0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene058526 | MS.gene72621 | 0.802371 | 5.79E-49 | -1.69E-46 |
| MS.gene058527 | MS.gene72621 | 0.802353 | 5.84E-49 | -1.69E-46 |
| MS.gene058528 | MS.gene72621 | 0.804494 | 2.10E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene72621 | 0.824175 | 9.31E-54 | -1.69E-46 |
| MS.gene060697 | MS.gene72621 | 0.824998 | 5.95E-54 | -1.69E-46 |
| MS.gene060777 | MS.gene72621 | 0.804772 | 1.84E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene72621 | 0.823409 | 1.41E-53 | -1.69E-46 |
| MS.gene061047 | MS.gene72621 | 0.801813 | 7.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72621.t1 | MTR_6g070920 | 91.824 | 159 | 1 | 1 | 1 | 147 | 72 | 230 | 4.45e-105 | 299 |
| MS.gene72621.t1 | MTR_6g070920 | 87.407 | 135 | 5 | 1 | 1 | 123 | 72 | 206 | 5.16e-83 | 243 |
| MS.gene72621.t1 | MTR_3g065330 | 55.696 | 158 | 53 | 4 | 1 | 142 | 10 | 166 | 3.17e-54 | 169 |
| MS.gene72621.t1 | MTR_1g032290 | 54.717 | 159 | 56 | 4 | 1 | 144 | 1 | 158 | 8.86e-54 | 167 |
| MS.gene72621.t1 | MTR_8g105140 | 54.037 | 161 | 58 | 4 | 1 | 146 | 1 | 160 | 2.06e-53 | 166 |
| MS.gene72621.t1 | MTR_5g078020 | 51.656 | 151 | 55 | 3 | 8 | 142 | 16 | 164 | 5.82e-46 | 148 |
| MS.gene72621.t1 | MTR_6g070920 | 81.319 | 91 | 5 | 1 | 1 | 79 | 72 | 162 | 1.46e-45 | 146 |
| MS.gene72621.t1 | MTR_3g065330 | 55.556 | 135 | 43 | 4 | 1 | 119 | 32 | 165 | 4.65e-43 | 140 |
| MS.gene72621.t1 | MTR_8g039690 | 41.509 | 159 | 72 | 3 | 2 | 139 | 1 | 159 | 1.78e-33 | 116 |
| MS.gene72621.t1 | MTR_7g084380 | 42.331 | 163 | 70 | 4 | 2 | 140 | 1 | 163 | 1.80e-32 | 114 |
| MS.gene72621.t1 | MTR_7g084380 | 40.288 | 139 | 59 | 4 | 26 | 140 | 21 | 159 | 2.40e-23 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72621.t1 | AT1G18300 | 55.414 | 157 | 53 | 4 | 1 | 141 | 40 | 195 | 2.26e-55 | 172 |
| MS.gene72621.t1 | AT1G73540 | 55.414 | 157 | 53 | 4 | 1 | 143 | 41 | 194 | 3.93e-53 | 167 |
| MS.gene72621.t1 | AT1G14860 | 55.128 | 156 | 55 | 3 | 1 | 142 | 1 | 155 | 8.93e-53 | 165 |
| MS.gene72621.t1 | AT2G01670 | 50.932 | 161 | 64 | 3 | 1 | 147 | 6 | 165 | 3.50e-50 | 159 |
| MS.gene72621.t1 | AT1G12880 | 42.169 | 166 | 69 | 4 | 2 | 140 | 1 | 166 | 5.44e-33 | 115 |
| MS.gene72621.t1 | AT3G26690 | 40.120 | 167 | 72 | 4 | 2 | 140 | 1 | 167 | 8.81e-30 | 107 |
| MS.gene72621.t1 | AT3G26690 | 40.120 | 167 | 72 | 4 | 2 | 140 | 1 | 167 | 8.81e-30 | 107 |
| MS.gene72621.t1 | AT3G12600 | 43.750 | 160 | 67 | 4 | 2 | 138 | 1 | 160 | 1.86e-26 | 98.2 |
| MS.gene72621.t1 | AT3G12600 | 43.243 | 148 | 61 | 4 | 14 | 138 | 4 | 151 | 1.81e-22 | 87.8 |
Find 33 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTATGTTCATTTC+TGG | 0.092026 | 6.4:+48421348 | None:intergenic |
| TGCAGAGTAATTTGGGTAAA+TGG | 0.215433 | 6.4:-48421452 | MS.gene72621:intron |
| TGAACATAAGAAGAAGAAAA+TGG | 0.253808 | 6.4:-48421341 | MS.gene72621:CDS |
| ATAGAAGAAGCTGGAGTTAT+TGG | 0.256499 | 6.4:-48421587 | MS.gene72621:CDS |
| AATAACTCCAGCTTCTTCTA+TGG | 0.282235 | 6.4:+48421589 | None:intergenic |
| TTAGCAAGGAGTTGGATAAT+TGG | 0.322855 | 6.4:-48421371 | MS.gene72621:CDS |
| GAAGGAAGCTTTAGATGAAT+TGG | 0.336584 | 6.4:-48420935 | MS.gene72621:CDS |
| ACCTAAAACTTAGATTGAAT+TGG | 0.341917 | 6.4:+48420900 | None:intergenic |
| TGCAAATGTCTACCAGTTCT+AGG | 0.360990 | 6.4:+48422262 | None:intergenic |
| GCTTCCTTCATCCAAGCATA+TGG | 0.390570 | 6.4:+48420949 | None:intergenic |
| AAGAAATATGCCCATATGCT+TGG | 0.435806 | 6.4:-48420960 | MS.gene72621:CDS |
| TGTTTGGTTTCTCCTAGAAC+TGG | 0.445974 | 6.4:-48422274 | MS.gene72621:CDS |
| ATTGGAGAATATGATGTGTT+TGG | 0.449206 | 6.4:-48422290 | None:intergenic |
| GAACATAAGAAGAAGAAAAT+GGG | 0.454169 | 6.4:-48421340 | MS.gene72621:intron |
| GTTCCCTTTGCTTGTTAGCA+AGG | 0.472162 | 6.4:-48421385 | MS.gene72621:CDS |
| TTTGCTTGTTAGCAAGGAGT+TGG | 0.481309 | 6.4:-48421379 | MS.gene72621:CDS |
| AAAGAATGGAACTCAAGAAA+AGG | 0.494824 | 6.4:-48421717 | MS.gene72621:CDS |
| TCTCAAAGCAGCTTGTTCCA+TGG | 0.496073 | 6.4:+48421616 | None:intergenic |
| AGAGAAACCATAGAAGAAGC+TGG | 0.505150 | 6.4:-48421596 | MS.gene72621:CDS |
| AACTCAAGAAAAGGAAATAG+AGG | 0.509278 | 6.4:-48421708 | MS.gene72621:CDS |
| AACTCCTTGCTAACAAGCAA+AGG | 0.516565 | 6.4:+48421381 | None:intergenic |
| CTTCCTTCATCCAAGCATAT+GGG | 0.522789 | 6.4:+48420950 | None:intergenic |
| ACAAGGATGTCGTCAAGTTG+TGG | 0.541451 | 6.4:-48422230 | MS.gene72621:CDS |
| CATGTATCCTTCATGCATAG+TGG | 0.542137 | 6.4:+48421407 | None:intergenic |
| CAAGGATGTCGTCAAGTTGT+GGG | 0.550727 | 6.4:-48422229 | MS.gene72621:CDS |
| ACTCCTTGCTAACAAGCAAA+GGG | 0.551729 | 6.4:+48421382 | None:intergenic |
| ATGCCCATATGCTTGGATGA+AGG | 0.557447 | 6.4:-48420953 | MS.gene72621:CDS |
| ATCCTTCATGCATAGTGGGT+TGG | 0.562217 | 6.4:+48421412 | None:intergenic |
| ATGTATCCTTCATGCATAGT+GGG | 0.569535 | 6.4:+48421408 | None:intergenic |
| CATTTGCAACGTTATGAACA+AGG | 0.571762 | 6.4:-48422247 | MS.gene72621:CDS |
| CGCCAACCCACTATGCATGA+AGG | 0.576057 | 6.4:-48421414 | MS.gene72621:CDS |
| AAGGATGTCGTCAAGTTGTG+GGG | 0.655005 | 6.4:-48422228 | MS.gene72621:intron |
| TGTAATCATGCAGTTGACTG+TGG | 0.660929 | 6.4:-48420992 | MS.gene72621:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAAAAGTTGAATAT+AGG | + | chr6.4:48421890-48421909 | None:intergenic | 10.0% |
| !!! | ATGTTTGATAATTAATATAA+TGG | - | chr6.4:48421045-48421064 | MS.gene72621:intron | 10.0% |
| !!! | ATTTTTCATGAAATAATATT+TGG | - | chr6.4:48421676-48421695 | MS.gene72621:intron | 10.0% |
| !!! | TTTTAAAGTTTTGATTTTTA+AGG | - | chr6.4:48421191-48421210 | MS.gene72621:intron | 10.0% |
| !! | TTACAAATGAAAGAAATATT+AGG | + | chr6.4:48422182-48422201 | None:intergenic | 15.0% |
| !!! | AACAATTTTTGAAATTTTGA+AGG | - | chr6.4:48421233-48421252 | MS.gene72621:intron | 15.0% |
| !!! | ATTTTTAAGGTTTTATCAAT+TGG | - | chr6.4:48421080-48421099 | MS.gene72621:intron | 15.0% |
| !!! | GACAATTTATGAAATTTTTA+AGG | - | chr6.4:48421067-48421086 | MS.gene72621:intron | 15.0% |
| !!! | GGAATTTTTTGAAATTTTTA+AGG | - | chr6.4:48421149-48421168 | MS.gene72621:intron | 15.0% |
| !!! | TAAGGTTTTTTTTTTCAATT+GGG | - | chr6.4:48421167-48421186 | MS.gene72621:intron | 15.0% |
| !!! | TGTAATAACTTTTTTAGATT+TGG | - | chr6.4:48421647-48421666 | MS.gene72621:intron | 15.0% |
| !!! | TTAAGGTTTTTTTTTTCAAT+TGG | - | chr6.4:48421166-48421185 | MS.gene72621:intron | 15.0% |
| !!! | TTTTTAAGGTTTTATCAATT+GGG | - | chr6.4:48421081-48421100 | MS.gene72621:intron | 15.0% |
| !! | ATGATTCAACAATGAATAAA+AGG | + | chr6.4:48421302-48421321 | None:intergenic | 20.0% |
| !! | TCTTAATTAAGTAGCATTAT+TGG | - | chr6.4:48422129-48422148 | MS.gene72621:intron | 20.0% |
| !! | TGATTCAACAATGAATAAAA+GGG | + | chr6.4:48421301-48421320 | None:intergenic | 20.0% |
| !! | TTTATAAATGACACTTGATT+AGG | + | chr6.4:48422063-48422082 | None:intergenic | 20.0% |
| !! | TTTATTCATTGTTGAATCAT+TGG | - | chr6.4:48421302-48421321 | MS.gene72621:intron | 20.0% |
| !!! | AAGGTTTTTTTTTTCAATTG+GGG | - | chr6.4:48421168-48421187 | MS.gene72621:intron | 20.0% |
| !!! | AAGTTTTGATTTTTAAGGTT+TGG | - | chr6.4:48421196-48421215 | MS.gene72621:intron | 20.0% |
| !!! | ACTTTGTTTTATGTTGTTTT+TGG | - | chr6.4:48421418-48421437 | MS.gene72621:CDS | 20.0% |
| !!! | TTTGAAGGTTTTTCTTAATT+GGG | - | chr6.4:48421248-48421267 | MS.gene72621:intron | 20.0% |
| !!! | TTTTAAGGTTTTATCAATTG+GGG | - | chr6.4:48421082-48421101 | MS.gene72621:intron | 20.0% |
| !!! | TTTTGAAGGTTTTTCTTAAT+TGG | - | chr6.4:48421247-48421266 | MS.gene72621:intron | 20.0% |
| ! | AATTGGGGTTTCTTAAAATT+TGG | - | chr6.4:48421097-48421116 | MS.gene72621:intron | 25.0% |
| ! | AGATGAATTGACATTTGAAT+AGG | + | chr6.4:48422095-48422114 | None:intergenic | 25.0% |
| ! | ATTGGGGTTTCTTAAAATTT+GGG | - | chr6.4:48421098-48421117 | MS.gene72621:intron | 25.0% |
| ! | CCTTATAGATACAAAAAGAA+TGG | - | chr6.4:48421458-48421477 | MS.gene72621:intron | 25.0% |
| ! | GAACATAAGAAGAAGAAAAT+GGG | - | chr6.4:48421849-48421868 | MS.gene72621:intron | 25.0% |
| ! | TGAACATAAGAAGAAGAAAA+TGG | - | chr6.4:48421848-48421867 | MS.gene72621:intron | 25.0% |
| !! | CCATTCTTTTTGTATCTATA+AGG | + | chr6.4:48421461-48421480 | None:intergenic | 25.0% |
| !! | GATCTTGTGATTTTTCTTTT+GGG | - | chr6.4:48421000-48421019 | MS.gene72621:intron | 25.0% |
| !! | TGATCTTGTGATTTTTCTTT+TGG | - | chr6.4:48420999-48421018 | MS.gene72621:intron | 25.0% |
| !! | TGTTTGGAATTGAATATGAT+GGG | - | chr6.4:48421128-48421147 | MS.gene72621:intron | 25.0% |
| !!! | AAAAAAGTATTATGTCTGAG+CGG | + | chr6.4:48421991-48422010 | None:intergenic | 25.0% |
| !!! | AAATTTGGGTTTTTAGTGTT+TGG | - | chr6.4:48421112-48421131 | MS.gene72621:intron | 25.0% |
| !!! | CTTTTGGGTTTCTTAAAAAT+TGG | - | chr6.4:48421015-48421034 | MS.gene72621:intron | 25.0% |
| AAAGAATGGAACTCAAGAAA+AGG | - | chr6.4:48421472-48421491 | MS.gene72621:intron | 30.0% | |
| AACTCAAGAAAAGGAAATAG+AGG | - | chr6.4:48421481-48421500 | MS.gene72621:intron | 30.0% | |
| CTTCTTCTTATGTTCATTTC+TGG | + | chr6.4:48421844-48421863 | None:intergenic | 30.0% | |
| TTCATTGTTGAATCATTGGA+AGG | - | chr6.4:48421306-48421325 | MS.gene72621:intron | 30.0% | |
| ! | CTTTTGATAAGTGCTCAAAA+GGG | - | chr6.4:48421506-48421525 | MS.gene72621:intron | 30.0% |
| ! | GTGTTTGGAATTGAATATGA+TGG | - | chr6.4:48421127-48421146 | MS.gene72621:intron | 30.0% |
| ! | GTTTTCTTGCAGAGTAATTT+GGG | - | chr6.4:48421730-48421749 | MS.gene72621:CDS | 30.0% |
| ! | TCTTTTGATAAGTGCTCAAA+AGG | - | chr6.4:48421505-48421524 | MS.gene72621:intron | 30.0% |
| ! | TGTTTTCTTGCAGAGTAATT+TGG | - | chr6.4:48421729-48421748 | MS.gene72621:CDS | 30.0% |
| AAGAAATATGCCCATATGCT+TGG | - | chr6.4:48422229-48422248 | MS.gene72621:CDS | 35.0% | |
| AATAACTCCAGCTTCTTCTA+TGG | + | chr6.4:48421603-48421622 | None:intergenic | 35.0% | |
| ATAGAAGAAGCTGGAGTTAT+TGG | - | chr6.4:48421602-48421621 | MS.gene72621:CDS | 35.0% | |
| ATGTATCCTTCATGCATAGT+GGG | + | chr6.4:48421784-48421803 | None:intergenic | 35.0% | |
| CATTTGCAACGTTATGAACA+AGG | - | chr6.4:48420942-48420961 | MS.gene72621:CDS | 35.0% | |
| TGCAGAGTAATTTGGGTAAA+TGG | - | chr6.4:48421737-48421756 | MS.gene72621:CDS | 35.0% | |
| TTAGCAAGGAGTTGGATAAT+TGG | - | chr6.4:48421818-48421837 | MS.gene72621:intron | 35.0% | |
| TTGGGAAAAAGATGAAACCA+TGG | - | chr6.4:48421556-48421575 | MS.gene72621:intron | 35.0% | |
| !! | GAAGGAAGCTTTAGATGAAT+TGG | - | chr6.4:48422254-48422273 | MS.gene72621:CDS | 35.0% |
| AACTCCTTGCTAACAAGCAA+AGG | + | chr6.4:48421811-48421830 | None:intergenic | 40.0% | |
| ACTCCTTGCTAACAAGCAAA+GGG | + | chr6.4:48421810-48421829 | None:intergenic | 40.0% | |
| AGAGAAACCATAGAAGAAGC+TGG | - | chr6.4:48421593-48421612 | MS.gene72621:CDS | 40.0% | |
| AGTGGAATGCAGTTTCCAAA+AGG | - | chr6.4:48421530-48421549 | MS.gene72621:intron | 40.0% | |
| ATAAGTGCTCAAAAGGGTAG+TGG | - | chr6.4:48421512-48421531 | MS.gene72621:intron | 40.0% | |
| ATGACACTTGATTAGGCTCA+AGG | + | chr6.4:48422056-48422075 | None:intergenic | 40.0% | |
| CATGTATCCTTCATGCATAG+TGG | + | chr6.4:48421785-48421804 | None:intergenic | 40.0% | |
| CTTCCTTCATCCAAGCATAT+GGG | + | chr6.4:48422242-48422261 | None:intergenic | 40.0% | |
| TGCAAATGTCTACCAGTTCT+AGG | + | chr6.4:48420930-48420949 | None:intergenic | 40.0% | |
| TGTAATCATGCAGTTGACTG+TGG | - | chr6.4:48422197-48422216 | MS.gene72621:intron | 40.0% | |
| ! | TCTTTTTCCCAACCTCCTTT+TGG | + | chr6.4:48421548-48421567 | None:intergenic | 40.0% |
| ! | TGTTTGGTTTCTCCTAGAAC+TGG | - | chr6.4:48420915-48420934 | MS.gene72621:CDS | 40.0% |
| ! | TTTGCTTGTTAGCAAGGAGT+TGG | - | chr6.4:48421810-48421829 | MS.gene72621:intron | 40.0% |
| ATGCCCATATGCTTGGATGA+AGG | - | chr6.4:48422236-48422255 | MS.gene72621:CDS | 45.0% | |
| GCAGTTTCCAAAAGGAGGTT+GGG | - | chr6.4:48421538-48421557 | MS.gene72621:intron | 45.0% | |
| GCTTCCTTCATCCAAGCATA+TGG | + | chr6.4:48422243-48422262 | None:intergenic | 45.0% | |
| GGAATGCAGTTTCCAAAAGG+AGG | - | chr6.4:48421533-48421552 | MS.gene72621:intron | 45.0% | |
| TGCAGTTTCCAAAAGGAGGT+TGG | - | chr6.4:48421537-48421556 | MS.gene72621:intron | 45.0% | |
| ! | AAGGATGTCGTCAAGTTGTG+GGG | - | chr6.4:48420961-48420980 | MS.gene72621:CDS | 45.0% |
| ! | ACAAGGATGTCGTCAAGTTG+TGG | - | chr6.4:48420959-48420978 | MS.gene72621:CDS | 45.0% |
| ! | CAAGGATGTCGTCAAGTTGT+GGG | - | chr6.4:48420960-48420979 | MS.gene72621:CDS | 45.0% |
| ! | GTTCCCTTTGCTTGTTAGCA+AGG | - | chr6.4:48421804-48421823 | MS.gene72621:intron | 45.0% |
| ! | TCTCAAAGCAGCTTGTTCCA+TGG | + | chr6.4:48421576-48421595 | None:intergenic | 45.0% |
| !! | ATCCTTCATGCATAGTGGGT+TGG | + | chr6.4:48421780-48421799 | None:intergenic | 45.0% |
| TTATGTCGCAGCGCAGATTG+AGG | - | chr6.4:48422009-48422028 | MS.gene72621:intron | 50.0% | |
| CGCCAACCCACTATGCATGA+AGG | - | chr6.4:48421775-48421794 | MS.gene72621:intron | 55.0% | |
| TGTCTGAGCGGCTACGATTG+AGG | + | chr6.4:48421979-48421998 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 48420909 | 48422302 | 48420909 | ID=MS.gene72621 |
| chr6.4 | mRNA | 48420909 | 48422302 | 48420909 | ID=MS.gene72621.t1;Parent=MS.gene72621 |
| chr6.4 | exon | 48422229 | 48422302 | 48422229 | ID=MS.gene72621.t1.exon1;Parent=MS.gene72621.t1 |
| chr6.4 | CDS | 48422229 | 48422302 | 48422229 | ID=cds.MS.gene72621.t1;Parent=MS.gene72621.t1 |
| chr6.4 | exon | 48421681 | 48421760 | 48421681 | ID=MS.gene72621.t1.exon2;Parent=MS.gene72621.t1 |
| chr6.4 | CDS | 48421681 | 48421760 | 48421681 | ID=cds.MS.gene72621.t1;Parent=MS.gene72621.t1 |
| chr6.4 | exon | 48421577 | 48421644 | 48421577 | ID=MS.gene72621.t1.exon3;Parent=MS.gene72621.t1 |
| chr6.4 | CDS | 48421577 | 48421644 | 48421577 | ID=cds.MS.gene72621.t1;Parent=MS.gene72621.t1 |
| chr6.4 | exon | 48421341 | 48421469 | 48421341 | ID=MS.gene72621.t1.exon4;Parent=MS.gene72621.t1 |
| chr6.4 | CDS | 48421341 | 48421469 | 48421341 | ID=cds.MS.gene72621.t1;Parent=MS.gene72621.t1 |
| chr6.4 | exon | 48420909 | 48421001 | 48420909 | ID=MS.gene72621.t1.exon5;Parent=MS.gene72621.t1 |
| chr6.4 | CDS | 48420909 | 48421001 | 48420909 | ID=cds.MS.gene72621.t1;Parent=MS.gene72621.t1 |
| Gene Sequence |
| Protein sequence |
