Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72851.t1 | KEH27680.1 | 88.6 | 220 | 2 | 1 | 1 | 220 | 1 | 197 | 1.50E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72851.t1 | Q9FHI1 | 93.1 | 188 | 13 | 0 | 32 | 219 | 25 | 212 | 2.5e-102 | 372.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72851.t1 | A0A072UPA6 | 88.6 | 220 | 2 | 1 | 1 | 220 | 1 | 197 | 1.1e-106 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene72851 | -0.812236 | 4.69E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene72851 | -0.81231 | 4.52E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene72851 | -0.813138 | 2.98E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene72851 | -0.817021 | 4.09E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene72851 | -0.828724 | 7.67E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene72851 | -0.829932 | 3.90E-55 | -1.69E-46 |
| MS.gene050303 | MS.gene72851 | -0.83741 | 5.28E-57 | -1.69E-46 |
| MS.gene050319 | MS.gene72851 | 0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene050330 | MS.gene72851 | 0.822865 | 1.88E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene72851 | -0.807988 | 3.86E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene72851 | 0.874476 | 6.55E-68 | -1.69E-46 |
| MS.gene050629 | MS.gene72851 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene72851 | -0.825364 | 4.88E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene72851 | -0.802419 | 5.66E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene72851 | -0.824952 | 6.11E-54 | -1.69E-46 |
| MS.gene051265 | MS.gene72851 | -0.802121 | 6.52E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene72851 | -0.826619 | 2.46E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene72851 | -0.802056 | 6.72E-49 | -1.69E-46 |
| MS.gene052048 | MS.gene72851 | 0.849033 | 4.19E-60 | -1.69E-46 |
| MS.gene052302 | MS.gene72851 | -0.823731 | 1.18E-53 | -1.69E-46 |
| MS.gene052309 | MS.gene72851 | 0.845233 | 4.61E-59 | -1.69E-46 |
| MS.gene052358 | MS.gene72851 | 0.823758 | 1.17E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene72851 | -0.841267 | 5.27E-58 | -1.69E-46 |
| MS.gene053008 | MS.gene72851 | -0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene72851 | -0.829486 | 5.01E-55 | -1.69E-46 |
| MS.gene054667 | MS.gene72851 | -0.806193 | 9.26E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene72851 | -0.808565 | 2.91E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene72851 | -0.813403 | 2.61E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene72851 | 0.836009 | 1.20E-56 | -1.69E-46 |
| MS.gene056552 | MS.gene72851 | -0.821329 | 4.28E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene72851 | -0.800719 | 1.26E-48 | -1.69E-46 |
| MS.gene057439 | MS.gene72851 | -0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene72851 | -0.82256 | 2.22E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene72851 | -0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene72851 | -0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene058549 | MS.gene72851 | -0.805984 | 1.03E-49 | -1.69E-46 |
| MS.gene059033 | MS.gene72851 | 0.813192 | 2.90E-51 | -1.69E-46 |
| MS.gene059249 | MS.gene72851 | -0.827307 | 1.68E-54 | -1.69E-46 |
| MS.gene05979 | MS.gene72851 | -0.80317 | 3.96E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene72851 | 0.828864 | 7.09E-55 | -1.69E-46 |
| MS.gene060404 | MS.gene72851 | -0.811105 | 8.27E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene72851 | -0.800558 | 1.36E-48 | -1.69E-46 |
| MS.gene060683 | MS.gene72851 | -0.810409 | 1.17E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene72851 | -0.805478 | 1.31E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene72851 | -0.810032 | 1.41E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene72851 | -0.839179 | 1.85E-57 | -1.69E-46 |
| MS.gene061040 | MS.gene72851 | 0.8343 | 3.25E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72851.t1 | MTR_5g027160 | 88.636 | 220 | 2 | 1 | 1 | 220 | 1 | 197 | 3.90e-143 | 397 |
| MS.gene72851.t1 | MTR_5g027160 | 99.471 | 189 | 1 | 0 | 32 | 220 | 25 | 213 | 8.43e-143 | 397 |
| MS.gene72851.t1 | MTR_2g041600 | 87.234 | 188 | 24 | 0 | 32 | 219 | 26 | 213 | 9.28e-128 | 359 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72851.t1 | AT5G45550 | 93.085 | 188 | 13 | 0 | 32 | 219 | 25 | 212 | 4.62e-134 | 375 |
| MS.gene72851.t1 | AT4G19045 | 93.085 | 188 | 13 | 0 | 32 | 219 | 25 | 212 | 2.61e-132 | 371 |
| MS.gene72851.t1 | AT5G20440 | 57.277 | 213 | 78 | 4 | 19 | 219 | 3 | 214 | 1.64e-87 | 258 |
| MS.gene72851.t1 | AT5G20430 | 62.698 | 126 | 41 | 2 | 94 | 219 | 1 | 120 | 1.84e-55 | 173 |
Find 48 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTTCCTGCCAACTTTA+AGG | 0.054380 | 5.1:+17688148 | MS.gene72851:CDS |
| ACTCAACATTTAATAGATTA+TGG | 0.215343 | 5.1:-17688466 | None:intergenic |
| ACCAAGCTTCTGAGGGAATA+TGG | 0.247972 | 5.1:-17688032 | None:intergenic |
| GTTTGGGCTGATTGACAAAA+AGG | 0.310105 | 5.1:+17688413 | MS.gene72851:CDS |
| ACTCTAGGTATGAGTATAGA+TGG | 0.331755 | 5.1:+17687912 | MS.gene72851:intron |
| AAACACATTGATGCGACATT+AGG | 0.343649 | 5.1:+17686607 | MS.gene72851:CDS |
| TCCTTAAAGTTGGCAGGAAA+TGG | 0.358892 | 5.1:-17688149 | None:intergenic |
| TACATACATATTCGATCATT+AGG | 0.368156 | 5.1:-17685970 | None:intergenic |
| AGTAGATTCCGTATCTCTAT+TGG | 0.377308 | 5.1:+17686081 | MS.gene72851:CDS |
| TCAGATGGGCCTCTTCTTTG+AGG | 0.381666 | 5.1:-17688250 | None:intergenic |
| AACCAGGTGAATCTGCTCTA+TGG | 0.388725 | 5.1:+17686870 | MS.gene72851:CDS |
| AACACATTGATGCGACATTA+GGG | 0.403871 | 5.1:+17686608 | MS.gene72851:CDS |
| AAAGTATGTAGAATATCTTA+TGG | 0.404082 | 5.1:+17687979 | MS.gene72851:CDS |
| TTTGGAGCAGAAACCTCAAT+AGG | 0.410812 | 5.1:-17687959 | None:intergenic |
| ATAAGATATTCTACATACTT+TGG | 0.414597 | 5.1:-17687977 | None:intergenic |
| AGACATTGTGCGACAATTCT+CGG | 0.449230 | 5.1:-17686916 | None:intergenic |
| TAGAGATACGGAATCTACTT+TGG | 0.459834 | 5.1:-17686077 | None:intergenic |
| GACATTGTGCGACAATTCTC+GGG | 0.495014 | 5.1:-17686915 | None:intergenic |
| TCCATATTCCCTCAGAAGCT+TGG | 0.496080 | 5.1:+17688031 | MS.gene72851:CDS |
| ACGACATCCTTAAAGTTGGC+AGG | 0.500857 | 5.1:-17688155 | None:intergenic |
| CTTCACGACATCCTTAAAGT+TGG | 0.514146 | 5.1:-17688159 | None:intergenic |
| AAGTATTTACCAAGCTTCTG+AGG | 0.529658 | 5.1:-17688040 | None:intergenic |
| ATGTAGAATATCTTATGGAC+TGG | 0.538976 | 5.1:+17687984 | MS.gene72851:CDS |
| GAAGCTGTAAAGCTACCTCC+CGG | 0.542561 | 5.1:+17686646 | MS.gene72851:CDS |
| CCACTCATTCAAATCCTCCC+CGG | 0.543359 | 5.1:-17686665 | None:intergenic |
| TATGAGTATAGATGGGCAGA+TGG | 0.555205 | 5.1:+17687920 | MS.gene72851:CDS |
| AATTGTCGCACAATGTCTGC+AGG | 0.560455 | 5.1:+17686921 | MS.gene72851:CDS |
| CACTCATTCAAATCCTCCCC+GGG | 0.561983 | 5.1:-17686664 | None:intergenic |
| CTCTAGGTATGAGTATAGAT+GGG | 0.572215 | 5.1:+17687913 | MS.gene72851:intron |
| AAGCTGTAAAGCTACCTCCC+GGG | 0.575555 | 5.1:+17686647 | MS.gene72851:CDS |
| AATTGTGAGCCTCAAAGAAG+AGG | 0.579374 | 5.1:+17688241 | MS.gene72851:CDS |
| GCTTGAAGCATGTGTTCAGA+TGG | 0.579689 | 5.1:-17688265 | None:intergenic |
| CCGGGGAGGATTTGAATGAG+TGG | 0.598805 | 5.1:+17686665 | MS.gene72851:CDS |
| GTTTCTATAAGCTCTTGAAG+TGG | 0.602626 | 5.1:-17688444 | None:intergenic |
| ACGCATAACCAATAGAGATA+CGG | 0.605567 | 5.1:-17686089 | None:intergenic |
| CATTAGGGAGTGGAAATCTG+AGG | 0.608703 | 5.1:+17686623 | MS.gene72851:CDS |
| TCGTGAAGACAATATTTAAG+CGG | 0.611671 | 5.1:+17688174 | MS.gene72851:CDS |
| AGTATTTACCAAGCTTCTGA+GGG | 0.614054 | 5.1:-17688039 | None:intergenic |
| TGCCATAGAGCAGATTCACC+TGG | 0.628858 | 5.1:-17686872 | None:intergenic |
| AGCTGTAAAGCTACCTCCCG+GGG | 0.630309 | 5.1:+17686648 | MS.gene72851:CDS |
| ATTAGGGAGTGGAAATCTGA+GGG | 0.636791 | 5.1:+17686624 | MS.gene72851:CDS |
| ATTGATGCGACATTAGGGAG+TGG | 0.654161 | 5.1:+17686613 | MS.gene72851:CDS |
| TGTAAAGCTACCTCCCGGGG+AGG | 0.655742 | 5.1:+17686651 | MS.gene72851:CDS |
| CTTGAAGCATGTGTTCAGAT+GGG | 0.667441 | 5.1:-17688264 | None:intergenic |
| GGGAGTACAGAACTCTGTGA+GGG | 0.667733 | 5.1:-17686895 | None:intergenic |
| CGGGAGTACAGAACTCTGTG+AGG | 0.670311 | 5.1:-17686896 | None:intergenic |
| TCATTCAAATCCTCCCCGGG+AGG | 0.705832 | 5.1:-17686661 | None:intergenic |
| GATATATATGAGCATATACA+CGG | 0.719167 | 5.1:-17688202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATAAAATAAAAAAT+AGG | - | chr5.1:17686191-17686210 | None:intergenic | 0.0% |
| !! | CACATATATAAATATAATTT+AGG | + | chr5.1:17686408-17686427 | MS.gene72851:intron | 10.0% |
| !! | GAATTGTATGAATATATAAT+TGG | - | chr5.1:17686791-17686810 | None:intergenic | 15.0% |
| !! | TATTTATAAATTTCGATCTT+CGG | + | chr5.1:17686202-17686221 | MS.gene72851:intron | 15.0% |
| !!! | ATTTAAAACTACAATGATTT+TGG | - | chr5.1:17687470-17687489 | None:intergenic | 15.0% |
| !!! | GGAATTTTTTTTTTTGAAAA+TGG | - | chr5.1:17687609-17687628 | None:intergenic | 15.0% |
| !!! | TTATTTTTATGATCATTTAG+TGG | - | chr5.1:17687100-17687119 | None:intergenic | 15.0% |
| !!! | TTTTCTAAAAATTAAGGATA+TGG | - | chr5.1:17686459-17686478 | None:intergenic | 15.0% |
| !! | AAAGTATGTAGAATATCTTA+TGG | + | chr5.1:17687979-17687998 | MS.gene72851:CDS | 20.0% |
| !! | AAATGCAAAATGTTTGAATA+TGG | + | chr5.1:17686145-17686164 | MS.gene72851:intron | 20.0% |
| !! | AATAGTGTTAATTAATACAC+AGG | - | chr5.1:17687345-17687364 | None:intergenic | 20.0% |
| !! | ATAAGATATTCTACATACTT+TGG | - | chr5.1:17687980-17687999 | None:intergenic | 20.0% |
| !! | ATAGTGTTAATTAATACACA+GGG | - | chr5.1:17687344-17687363 | None:intergenic | 20.0% |
| !! | CACAACATTTAAGAAATTTA+AGG | - | chr5.1:17686987-17687006 | None:intergenic | 20.0% |
| !! | CTACAAATCTATACAAAAAT+AGG | - | chr5.1:17687867-17687886 | None:intergenic | 20.0% |
| !! | GAATAGAAAATTACTTAGAT+TGG | + | chr5.1:17687045-17687064 | MS.gene72851:intron | 20.0% |
| !! | TAAAAATAAGTGTAATACAG+TGG | + | chr5.1:17687111-17687130 | MS.gene72851:intron | 20.0% |
| !!! | AATTTGAAATACTTTCTGAA+AGG | - | chr5.1:17687583-17687602 | None:intergenic | 20.0% |
| !!! | ACTGTTTATTTTAAAATCAG+TGG | - | chr5.1:17687823-17687842 | None:intergenic | 20.0% |
| !!! | CACATTTTCTTAAAGATAAT+TGG | + | chr5.1:17688063-17688082 | MS.gene72851:intron | 20.0% |
| !!! | CAGCAATTTTCTAAAAATTA+AGG | - | chr5.1:17686465-17686484 | None:intergenic | 20.0% |
| !!! | CTAAGTAATTTTCTATTCAA+CGG | - | chr5.1:17687043-17687062 | None:intergenic | 20.0% |
| !!! | CTGTTTATTTTAAAATCAGT+GGG | - | chr5.1:17687822-17687841 | None:intergenic | 20.0% |
| !!! | GCTGTTATATTTTAATTTCA+GGG | + | chr5.1:17686571-17686590 | MS.gene72851:intron | 20.0% |
| !!! | TATTCTGTTCTGAATTTTTA+TGG | + | chr5.1:17687703-17687722 | MS.gene72851:intron | 20.0% |
| !!! | TGCTGTTATATTTTAATTTC+AGG | + | chr5.1:17686570-17686589 | MS.gene72851:intron | 20.0% |
| !!! | TTCGTAATTTGTTTATAACT+TGG | + | chr5.1:17687232-17687251 | MS.gene72851:intron | 20.0% |
| !!! | TTGATAACTTTAATTGATCT+AGG | - | chr5.1:17687260-17687279 | None:intergenic | 20.0% |
| ! | ATCATTATCATCGTCATTAA+AGG | - | chr5.1:17687649-17687668 | None:intergenic | 25.0% |
| ! | GATATATATGAGCATATACA+CGG | - | chr5.1:17688205-17688224 | None:intergenic | 25.0% |
| ! | GCAAATTAAAAAACCTATTG+AGG | + | chr5.1:17687946-17687965 | MS.gene72851:CDS | 25.0% |
| ! | TACATACATATTCGATCATT+AGG | - | chr5.1:17685973-17685992 | None:intergenic | 25.0% |
| !! | CAGATGAATTTAGAATGAAT+CGG | - | chr5.1:17687683-17687702 | None:intergenic | 25.0% |
| !!! | AAGTTACCATTTTTCGATAA+TGG | + | chr5.1:17687406-17687425 | MS.gene72851:intron | 25.0% |
| !!! | ACTGTTGTTATTATTTTTGC+AGG | + | chr5.1:17688389-17688408 | MS.gene72851:intron | 25.0% |
| !!! | ACTTAGGAGTGTTTATTATT+TGG | + | chr5.1:17687527-17687546 | MS.gene72851:intron | 25.0% |
| !!! | ATTAACACTATTTTTCGTGA+AGG | + | chr5.1:17687353-17687372 | MS.gene72851:intron | 25.0% |
| !!! | GTTCTGAATTTTTATGGATT+TGG | + | chr5.1:17687709-17687728 | MS.gene72851:intron | 25.0% |
| !!! | TATTATTTTTGCAGGAGTTT+GGG | + | chr5.1:17688397-17688416 | MS.gene72851:intron | 25.0% |
| !!! | TTATTATTTTTGCAGGAGTT+TGG | + | chr5.1:17688396-17688415 | MS.gene72851:intron | 25.0% |
| AAAAATCAACAGCTGAAATG+TGG | - | chr5.1:17686848-17686867 | None:intergenic | 30.0% | |
| AAAATCAACAGCTGAAATGT+GGG | - | chr5.1:17686847-17686866 | None:intergenic | 30.0% | |
| AAGGAATGCTGTTCATTATA+AGG | - | chr5.1:17687630-17687649 | None:intergenic | 30.0% | |
| ATCAGTTAACTATGCATACT+TGG | - | chr5.1:17686949-17686968 | None:intergenic | 30.0% | |
| ATGTAGAATATCTTATGGAC+TGG | + | chr5.1:17687984-17688003 | MS.gene72851:CDS | 30.0% | |
| ATGTGACAGATAATCAAGAT+AGG | - | chr5.1:17687291-17687310 | None:intergenic | 30.0% | |
| GTCTATTACATGAAAACTCT+AGG | + | chr5.1:17687897-17687916 | MS.gene72851:intron | 30.0% | |
| TCAGTTAACTATGCATACTT+GGG | - | chr5.1:17686948-17686967 | None:intergenic | 30.0% | |
| TCGTGAAGACAATATTTAAG+CGG | + | chr5.1:17688174-17688193 | MS.gene72851:CDS | 30.0% | |
| ! | ACAGGGCATTAAATTAAAAC+AGG | - | chr5.1:17687327-17687346 | None:intergenic | 30.0% |
| ! | ATCATCAGCTGTCAAATTTT+TGG | + | chr5.1:17686119-17686138 | MS.gene72851:CDS | 30.0% |
| ! | GATTAATTTTTATGCCCTGA+CGG | - | chr5.1:17688363-17688382 | None:intergenic | 30.0% |
| ! | GATTTGGCTTCTTTAAAGAA+GGG | + | chr5.1:17687725-17687744 | MS.gene72851:intron | 30.0% |
| ! | TAATCTTGTTCTCTGAAAGT+TGG | - | chr5.1:17686513-17686532 | None:intergenic | 30.0% |
| ! | TCGTCATAGAAGAAGATTTT+TGG | + | chr5.1:17687190-17687209 | MS.gene72851:intron | 30.0% |
| AAACACATTGATGCGACATT+AGG | + | chr5.1:17686607-17686626 | MS.gene72851:CDS | 35.0% | |
| AAATTTCGATCTTCGGATGA+GGG | + | chr5.1:17686209-17686228 | MS.gene72851:intron | 35.0% | |
| AACACATTGATGCGACATTA+GGG | + | chr5.1:17686608-17686627 | MS.gene72851:CDS | 35.0% | |
| AAGTATTTACCAAGCTTCTG+AGG | - | chr5.1:17688043-17688062 | None:intergenic | 35.0% | |
| ACCACTTTGCCATAAATTGT+TGG | + | chr5.1:17687156-17687175 | MS.gene72851:intron | 35.0% | |
| ACGCATAACCAATAGAGATA+CGG | - | chr5.1:17686092-17686111 | None:intergenic | 35.0% | |
| ACTCTAGGTATGAGTATAGA+TGG | + | chr5.1:17687912-17687931 | MS.gene72851:intron | 35.0% | |
| AGCACTCCATTATCGAAAAA+TGG | - | chr5.1:17687415-17687434 | None:intergenic | 35.0% | |
| AGCATAAAAATTACACCGTC+AGG | + | chr5.1:17688345-17688364 | MS.gene72851:intron | 35.0% | |
| AGTAGATTCCGTATCTCTAT+TGG | + | chr5.1:17686081-17686100 | MS.gene72851:CDS | 35.0% | |
| AGTATTTACCAAGCTTCTGA+GGG | - | chr5.1:17688042-17688061 | None:intergenic | 35.0% | |
| CTAGAATCTAGACAGTACTT+AGG | + | chr5.1:17687511-17687530 | MS.gene72851:intron | 35.0% | |
| CTCTAGGTATGAGTATAGAT+GGG | + | chr5.1:17687913-17687932 | MS.gene72851:intron | 35.0% | |
| GCATAAAAATTACACCGTCA+GGG | + | chr5.1:17688346-17688365 | MS.gene72851:intron | 35.0% | |
| GTAACTCATAATCGTTGCTA+AGG | - | chr5.1:17686375-17686394 | None:intergenic | 35.0% | |
| GTTTCTATAAGCTCTTGAAG+TGG | - | chr5.1:17688447-17688466 | None:intergenic | 35.0% | |
| TAAATTTCGATCTTCGGATG+AGG | + | chr5.1:17686208-17686227 | MS.gene72851:intron | 35.0% | |
| TACAAGGAGCCAACAATTTA+TGG | - | chr5.1:17687168-17687187 | None:intergenic | 35.0% | |
| TAGAGATACGGAATCTACTT+TGG | - | chr5.1:17686080-17686099 | None:intergenic | 35.0% | |
| TTCTTCTATGACGAGATACA+AGG | - | chr5.1:17687184-17687203 | None:intergenic | 35.0% | |
| TTGCTAAGGTCACTATTCAA+TGG | - | chr5.1:17686361-17686380 | None:intergenic | 35.0% | |
| ! | ACAGTGTAAGAGTATATGAG+TGG | + | chr5.1:17686304-17686323 | MS.gene72851:intron | 35.0% |
| ! | ACTGTCTAGATTCTAGAAAC+TGG | - | chr5.1:17687507-17687526 | None:intergenic | 35.0% |
| ! | AGTGTAAGAGTATATGAGTG+GGG | + | chr5.1:17686306-17686325 | MS.gene72851:intron | 35.0% |
| ! | CAGTGTAAGAGTATATGAGT+GGG | + | chr5.1:17686305-17686324 | MS.gene72851:intron | 35.0% |
| ! | CATTCTTGTTGTATGACCTA+TGG | + | chr5.1:17688111-17688130 | MS.gene72851:intron | 35.0% |
| ! | GGATTTGGCTTCTTTAAAGA+AGG | + | chr5.1:17687724-17687743 | MS.gene72851:intron | 35.0% |
| ! | TAAAGAAGGGATGCATTTTG+AGG | + | chr5.1:17687738-17687757 | MS.gene72851:intron | 35.0% |
| !! | GTGTAATACAGTGGATTGTT+TGG | + | chr5.1:17687120-17687139 | MS.gene72851:intron | 35.0% |
| !!! | AGCTGTTGATTTTTTCAACC+AGG | + | chr5.1:17686854-17686873 | MS.gene72851:intron | 35.0% |
| AATGTTTGAATATGGCCAGC+TGG | + | chr5.1:17686153-17686172 | MS.gene72851:intron | 40.0% | |
| AATTGTGAGCCTCAAAGAAG+AGG | + | chr5.1:17688241-17688260 | MS.gene72851:CDS | 40.0% | |
| AGACATTGTGCGACAATTCT+CGG | - | chr5.1:17686919-17686938 | None:intergenic | 40.0% | |
| AGGAAGAAAAAAAAGCCAGC+TGG | - | chr5.1:17686171-17686190 | None:intergenic | 40.0% | |
| ATTAGGGAGTGGAAATCTGA+GGG | + | chr5.1:17686624-17686643 | MS.gene72851:CDS | 40.0% | |
| CTTCACGACATCCTTAAAGT+TGG | - | chr5.1:17688162-17688181 | None:intergenic | 40.0% | |
| CTTGAAGCATGTGTTCAGAT+GGG | - | chr5.1:17688267-17688286 | None:intergenic | 40.0% | |
| GCCAACAATTTATGGCAAAG+TGG | - | chr5.1:17687160-17687179 | None:intergenic | 40.0% | |
| GCTGATTGACAAAAAGGAAC+TGG | + | chr5.1:17688419-17688438 | MS.gene72851:CDS | 40.0% | |
| GTTTGGGCTGATTGACAAAA+AGG | + | chr5.1:17688413-17688432 | MS.gene72851:CDS | 40.0% | |
| TATGACCTATGGAATCATGC+AGG | + | chr5.1:17688122-17688141 | MS.gene72851:intron | 40.0% | |
| TATGAGTATAGATGGGCAGA+TGG | + | chr5.1:17687920-17687939 | MS.gene72851:CDS | 40.0% | |
| TCCATTTCCTGCCAACTTTA+AGG | + | chr5.1:17688148-17688167 | MS.gene72851:CDS | 40.0% | |
| TCCTTAAAGTTGGCAGGAAA+TGG | - | chr5.1:17688152-17688171 | None:intergenic | 40.0% | |
| ! | GATTCTAGAAACTGGACAAC+TGG | - | chr5.1:17687499-17687518 | None:intergenic | 40.0% |
| ! | TAAGAGTATATGAGTGGGGA+GGG | + | chr5.1:17686310-17686329 | MS.gene72851:intron | 40.0% |
| ! | TTTGGAGCAGAAACCTCAAT+AGG | - | chr5.1:17687962-17687981 | None:intergenic | 40.0% |
| AACCAGGTGAATCTGCTCTA+TGG | + | chr5.1:17686870-17686889 | MS.gene72851:CDS | 45.0% | |
| AATTGTCGCACAATGTCTGC+AGG | + | chr5.1:17686921-17686940 | MS.gene72851:CDS | 45.0% | |
| ACGACATCCTTAAAGTTGGC+AGG | - | chr5.1:17688158-17688177 | None:intergenic | 45.0% | |
| ATTGATGCGACATTAGGGAG+TGG | + | chr5.1:17686613-17686632 | MS.gene72851:CDS | 45.0% | |
| CATTAGGGAGTGGAAATCTG+AGG | + | chr5.1:17686623-17686642 | MS.gene72851:CDS | 45.0% | |
| GACATTGTGCGACAATTCTC+GGG | - | chr5.1:17686918-17686937 | None:intergenic | 45.0% | |
| GAGAACCTGCATGATTCCAT+AGG | - | chr5.1:17688130-17688149 | None:intergenic | 45.0% | |
| GCTTGAAGCATGTGTTCAGA+TGG | - | chr5.1:17688268-17688287 | None:intergenic | 45.0% | |
| GTGATTTCAAGCAAGGAGTG+TGG | + | chr5.1:17686251-17686270 | MS.gene72851:intron | 45.0% | |
| TCCATATTCCCTCAGAAGCT+TGG | + | chr5.1:17688031-17688050 | MS.gene72851:CDS | 45.0% | |
| ! | AAGAGTATATGAGTGGGGAG+GGG | + | chr5.1:17686311-17686330 | MS.gene72851:intron | 45.0% |
| ! | ACCAAGCTTCTGAGGGAATA+TGG | - | chr5.1:17688035-17688054 | None:intergenic | 45.0% |
| ! | CAAGGAGTGTGGTTGTAACT+TGG | + | chr5.1:17686262-17686281 | MS.gene72851:intron | 45.0% |
| ! | GTAAGAGTATATGAGTGGGG+AGG | + | chr5.1:17686309-17686328 | MS.gene72851:intron | 45.0% |
| AAGCTGTAAAGCTACCTCCC+GGG | + | chr5.1:17686647-17686666 | MS.gene72851:CDS | 50.0% | |
| ATCTTCGGATGAGGGATGGT+GGG | + | chr5.1:17686217-17686236 | MS.gene72851:intron | 50.0% | |
| CACTCATTCAAATCCTCCCC+GGG | - | chr5.1:17686667-17686686 | None:intergenic | 50.0% | |
| CCACTCATTCAAATCCTCCC+CGG | - | chr5.1:17686668-17686687 | None:intergenic | 50.0% | |
| GAAGCTGTAAAGCTACCTCC+CGG | + | chr5.1:17686646-17686665 | MS.gene72851:CDS | 50.0% | |
| GGAGTGTGGTTGTAACTTGG+AGG | + | chr5.1:17686265-17686284 | MS.gene72851:intron | 50.0% | |
| GGTGAGGGTGATTTCAAGCA+AGG | + | chr5.1:17686244-17686263 | MS.gene72851:intron | 50.0% | |
| GTGTGGTTGTAACTTGGAGG+AGG | + | chr5.1:17686268-17686287 | MS.gene72851:intron | 50.0% | |
| TCAACAGCTGAAATGTGGGC+AGG | - | chr5.1:17686843-17686862 | None:intergenic | 50.0% | |
| TCAGATGGGCCTCTTCTTTG+AGG | - | chr5.1:17688253-17688272 | None:intergenic | 50.0% | |
| TGCCATAGAGCAGATTCACC+TGG | - | chr5.1:17686875-17686894 | None:intergenic | 50.0% | |
| TGGTTGTAACTTGGAGGAGG+AGG | + | chr5.1:17686271-17686290 | MS.gene72851:intron | 50.0% | |
| TTCGATCTTCGGATGAGGGA+TGG | + | chr5.1:17686213-17686232 | MS.gene72851:intron | 50.0% | |
| TTGTAACTTGGAGGAGGAGG+AGG | + | chr5.1:17686274-17686293 | MS.gene72851:intron | 50.0% | |
| ! | GGGAGTACAGAACTCTGTGA+GGG | - | chr5.1:17686898-17686917 | None:intergenic | 50.0% |
| AGCTGTAAAGCTACCTCCCG+GGG | + | chr5.1:17686648-17686667 | MS.gene72851:CDS | 55.0% | |
| CCGGGGAGGATTTGAATGAG+TGG | + | chr5.1:17686665-17686684 | MS.gene72851:CDS | 55.0% | |
| GATCTTCGGATGAGGGATGG+TGG | + | chr5.1:17686216-17686235 | MS.gene72851:intron | 55.0% | |
| TCATTCAAATCCTCCCCGGG+AGG | - | chr5.1:17686664-17686683 | None:intergenic | 55.0% | |
| TCTTCGGATGAGGGATGGTG+GGG | + | chr5.1:17686218-17686237 | MS.gene72851:intron | 55.0% | |
| ! | CGGGAGTACAGAACTCTGTG+AGG | - | chr5.1:17686899-17686918 | None:intergenic | 55.0% |
| TGTAAAGCTACCTCCCGGGG+AGG | + | chr5.1:17686651-17686670 | MS.gene72851:CDS | 60.0% | |
| !! | AGGGATGGTGGGGCATGGTG+AGG | + | chr5.1:17686228-17686247 | MS.gene72851:intron | 65.0% |
| !! | GGATGAGGGATGGTGGGGCA+TGG | + | chr5.1:17686223-17686242 | MS.gene72851:intron | 65.0% |
| !! | GGGATGGTGGGGCATGGTGA+GGG | + | chr5.1:17686229-17686248 | MS.gene72851:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17685962 | 17688479 | 17685962 | ID=MS.gene72851 |
| chr5.1 | mRNA | 17685962 | 17688479 | 17685962 | ID=MS.gene72851.t1;Parent=MS.gene72851 |
| chr5.1 | exon | 17685962 | 17685985 | 17685962 | ID=MS.gene72851.t1.exon1;Parent=MS.gene72851.t1 |
| chr5.1 | CDS | 17685962 | 17685985 | 17685962 | ID=cds.MS.gene72851.t1;Parent=MS.gene72851.t1 |
| chr5.1 | exon | 17686072 | 17686140 | 17686072 | ID=MS.gene72851.t1.exon2;Parent=MS.gene72851.t1 |
| chr5.1 | CDS | 17686072 | 17686140 | 17686072 | ID=cds.MS.gene72851.t1;Parent=MS.gene72851.t1 |
| chr5.1 | exon | 17686592 | 17686700 | 17686592 | ID=MS.gene72851.t1.exon3;Parent=MS.gene72851.t1 |
| chr5.1 | CDS | 17686592 | 17686700 | 17686592 | ID=cds.MS.gene72851.t1;Parent=MS.gene72851.t1 |
| chr5.1 | exon | 17686856 | 17686949 | 17686856 | ID=MS.gene72851.t1.exon4;Parent=MS.gene72851.t1 |
| chr5.1 | CDS | 17686856 | 17686949 | 17686856 | ID=cds.MS.gene72851.t1;Parent=MS.gene72851.t1 |
| chr5.1 | exon | 17687919 | 17688052 | 17687919 | ID=MS.gene72851.t1.exon5;Parent=MS.gene72851.t1 |
| chr5.1 | CDS | 17687919 | 17688052 | 17687919 | ID=cds.MS.gene72851.t1;Parent=MS.gene72851.t1 |
| chr5.1 | exon | 17688144 | 17688307 | 17688144 | ID=MS.gene72851.t1.exon6;Parent=MS.gene72851.t1 |
| chr5.1 | CDS | 17688144 | 17688307 | 17688144 | ID=cds.MS.gene72851.t1;Parent=MS.gene72851.t1 |
| chr5.1 | exon | 17688411 | 17688479 | 17688411 | ID=MS.gene72851.t1.exon7;Parent=MS.gene72851.t1 |
| chr5.1 | CDS | 17688411 | 17688479 | 17688411 | ID=cds.MS.gene72851.t1;Parent=MS.gene72851.t1 |
| Gene Sequence |
| Protein sequence |
