AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75304


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75304.t1 MTR_3g110115 52.273 176 73 3 1 170 1 171 7.11e-45 155
MS.gene75304.t1 MTR_3g110115 54.074 135 53 2 202 327 129 263 1.77e-38 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75304.t1 AT5G25770 64.146 357 121 3 7 359 5 358 4.83e-172 483
MS.gene75304.t1 AT5G25770 64.146 357 121 3 7 359 63 416 3.43e-171 483
MS.gene75304.t1 AT5G25770 64.146 357 121 3 7 359 66 419 3.90e-171 483

Find 88 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTCTGATTGGTGTTC+AGG 0.258659 3.3:-90415164 MS.gene75304:intron
AAGTTCTCAATATCTTTCTT+TGG 0.300746 3.3:+90416796 None:intergenic
CCCTCTAGGATAGGAATTAC+TGG 0.302592 3.3:-90415330 MS.gene75304:CDS
TGCAGTGGCTCGTGATGATT+TGG 0.312380 3.3:-90414535 MS.gene75304:intron
GTTATTTGGTGCCCAATTCC+AGG 0.335797 3.3:+90413603 None:intergenic
AGAGGACGTGGTGCAATTAA+TGG 0.336417 3.3:+90414163 None:intergenic
AGGTCTTCTTGTCTGCTTAT+CGG 0.339872 3.3:+90416605 None:intergenic
TTTATTGCAGAACCTGGAAT+TGG 0.347959 3.3:-90413615 MS.gene75304:CDS
TTTGCGACTTGGACGGTTAA+CGG 0.373378 3.3:+90416874 None:intergenic
ATAATCTCCTCATCGGTTGA+TGG 0.388536 3.3:+90416829 None:intergenic
TGACCGTGTAGATAATTTCC+AGG 0.391195 3.3:-90413829 MS.gene75304:intron
TTGAGTACGGAGAATCAAAC+TGG 0.402829 3.3:+90414188 None:intergenic
GGAATTTCCAATCCGGCAAC+AGG 0.409370 3.3:+90413885 None:intergenic
CTGCCACTTATCGTTGTCTA+TGG 0.410315 3.3:+90415040 None:intergenic
GAATTTGCTCTGTTCTTCAA+TGG 0.416872 3.3:+90417036 None:intergenic
GATCCTAGGTGTCCTGTTGC+CGG 0.420728 3.3:-90413897 MS.gene75304:CDS
TATGAATGGCATTGTGTCTC+CGG 0.427566 3.3:+90415587 None:intergenic
GCTGTGGTTGCTCCTCTGAT+TGG 0.428440 3.3:-90415172 MS.gene75304:CDS
CTTATATCCGCATGGAAAAC+CGG 0.434878 3.3:-90415606 MS.gene75304:CDS
GCACCAAATAACAAAATTCA+TGG 0.438719 3.3:-90413592 MS.gene75304:CDS
TTCTGAATCAGGTGTGGGAC+AGG 0.445402 3.3:-90414231 MS.gene75304:intron
GGTGTGGGACTTGATTAAAT+TGG 0.451849 3.3:-90415385 MS.gene75304:CDS
CTTGAGGAGGTCGTCTGTTA+CGG 0.454080 3.3:+90416990 None:intergenic
TCGTTTATAAGTTTACAATC+CGG 0.459412 3.3:+90413518 None:intergenic
GAACTTCAATGATTTGCTAA+AGG 0.460609 3.3:-90416779 MS.gene75304:CDS
CGTTTATAAGTTTACAATCC+GGG 0.464402 3.3:+90413519 None:intergenic
TTATTGCAGAACCTGGAATT+GGG 0.469101 3.3:-90413614 MS.gene75304:CDS
TTCTAGGTGCGGAAGATCCT+AGG 0.469717 3.3:-90413911 MS.gene75304:intron
GGAGGAAAGTTATGCACCAT+TGG 0.471425 3.3:+90416850 None:intergenic
TGCCGTTGGAATTTCCAATC+CGG 0.473950 3.3:+90413878 None:intergenic
GTGTGGGACAGGATTGCTCC+TGG 0.476440 3.3:-90414220 MS.gene75304:CDS
GCAGTGGCTCGTGATGATTT+GGG 0.477863 3.3:-90414534 MS.gene75304:intron
TATACTTGCAGGGATTTCAA+TGG 0.481769 3.3:-90415064 MS.gene75304:intron
TAGGTGTCCTGTTGCCGGAT+TGG 0.489689 3.3:-90413892 MS.gene75304:CDS
GAGGAGGTCGTCTGTTACGG+AGG 0.494509 3.3:+90416993 None:intergenic
TCCAACGGCAAAAGCAAGCC+AGG 0.500606 3.3:-90413865 MS.gene75304:CDS
CCAGTAATTCCTATCCTAGA+GGG 0.508883 3.3:+90415330 None:intergenic
CGTCCTCTGCTTATTCTCAA+TGG 0.511134 3.3:-90414148 MS.gene75304:intron
TATACTTGTTTGTACTGTGA+AGG 0.513834 3.3:+90416571 None:intergenic
CTAAAGCCTCAACTTATGCC+CGG 0.514631 3.3:-90413537 MS.gene75304:CDS
GAATCTCTACTTAACAATAG+AGG 0.522796 3.3:-90416752 MS.gene75304:intron
TGGTGAAAGAGTCATCTGAT+TGG 0.524306 3.3:-90413572 MS.gene75304:CDS
ACGCAGTTTATTGCAGAACC+TGG 0.525352 3.3:-90413621 MS.gene75304:intron
TGACAAAGAAGTGGTGGAGA+AGG 0.529203 3.3:-90414499 MS.gene75304:intron
TCGAGTTGACAGTATTAAGC+CGG 0.531415 3.3:-90415015 MS.gene75304:CDS
GCAATTAATGGAATTGAGTA+CGG 0.532905 3.3:+90414175 None:intergenic
TACAATCCGGGCATAAGTTG+AGG 0.542036 3.3:+90413531 None:intergenic
TTGATTCAGGAATGCATGCA+TGG 0.542270 3.3:-90415222 MS.gene75304:intron
TGCTATTGACAAAGAAGTGG+TGG 0.545931 3.3:-90414505 MS.gene75304:CDS
CTTCAATGATTTGCTAAAGG+AGG 0.550072 3.3:-90416776 MS.gene75304:CDS
TTTACCGTGTCATATATGAA+TGG 0.552135 3.3:+90415573 None:intergenic
GATATAGACCCCTCTAGGAT+AGG 0.555872 3.3:-90415339 MS.gene75304:CDS
ATTACTGGAATATCACTTGG+AGG 0.560375 3.3:-90415315 MS.gene75304:intron
GGTCCATAGACAACGATAAG+TGG 0.565007 3.3:-90415043 MS.gene75304:CDS
TCAAACTGGGAAGCTAAACC+AGG 0.565328 3.3:+90414202 None:intergenic
TGATTTCATAATCTCCTCAT+CGG 0.566337 3.3:+90416822 None:intergenic
ATATCTACGTCCGTTGCTTG+AGG 0.567698 3.3:-90416544 MS.gene75304:intron
CATAGACAACGATAAGTGGC+AGG 0.567708 3.3:-90415039 MS.gene75304:CDS
GAGAAGATATAGACCCCTCT+AGG 0.573890 3.3:-90415344 MS.gene75304:CDS
TCTGTTGATTCTCGTTACCA+TGG 0.577431 3.3:-90416340 MS.gene75304:CDS
CTGTGAAGGAAAACAACTGC+AGG 0.578552 3.3:+90416585 None:intergenic
AACAGGCTCTTATATCCGCA+TGG 0.584341 3.3:-90415614 MS.gene75304:intron
TGCCGGATTGGAAATTCCAA+CGG 0.585605 3.3:-90413880 MS.gene75304:CDS
GGAATTACTGGAATATCACT+TGG 0.586743 3.3:-90415318 MS.gene75304:CDS
GCAAATACATACATCGCGAT+AGG 0.590599 3.3:+90416294 None:intergenic
CGTCCAAGTCGCAAAACCAA+TGG 0.592502 3.3:-90416866 MS.gene75304:CDS
CGTTCTTTGCACGTTCACCA+TGG 0.599058 3.3:+90416323 None:intergenic
TTGAGAATAAGCAGAGGACG+TGG 0.607381 3.3:+90414151 None:intergenic
TGTAGGAAGGAGATCAAGGA+CGG 0.608390 3.3:-90416659 MS.gene75304:intron
ATCTCCTCATCGGTTGATGG+AGG 0.625755 3.3:+90416832 None:intergenic
CGTAACAGACGACCTCCTCA+AGG 0.627335 3.3:-90416989 MS.gene75304:intron
AATACATACATCGCGATAGG+TGG 0.630146 3.3:+90416297 None:intergenic
TAGTAAGCAACCTCAAGCAA+CGG 0.634422 3.3:+90416534 None:intergenic
AAGTGCTATTGACAAAGAAG+TGG 0.635080 3.3:-90414508 MS.gene75304:CDS
AATCCGGCAACAGGACACCT+AGG 0.637268 3.3:+90413894 None:intergenic
TTCAAGCTCAAAATCAACAC+AGG 0.639285 3.3:+90416633 None:intergenic
TCCAGTAATTCCTATCCTAG+AGG 0.647345 3.3:+90415329 None:intergenic
GGATTTGAAGAAACTCTGAT+CGG 0.649728 3.3:+90417014 None:intergenic
TGTTGAAACTCGCTATGCTG+TGG 0.656337 3.3:-90415188 MS.gene75304:CDS
TTTCAGGCATATGCTTCGCG+AGG 0.664270 3.3:-90416376 MS.gene75304:intron
CAGTAATTCCTATCCTAGAG+GGG 0.665391 3.3:+90415331 None:intergenic
GTCACCTGAACACCAATCAG+AGG 0.676055 3.3:+90415160 None:intergenic
CTTTCCTCCATCAACCGATG+AGG 0.685013 3.3:-90416836 MS.gene75304:CDS
GGAAACGTTGTACCTTGAGG+AGG 0.689977 3.3:+90416977 None:intergenic
ATACCTGGAAATTATCTACA+CGG 0.692922 3.3:+90413826 None:intergenic
AATGCCATTCATATATGACA+CGG 0.706188 3.3:-90415577 MS.gene75304:intron
TGAGTACGGAGAATCAAACT+GGG 0.711383 3.3:+90414189 None:intergenic
CTACCATTGAGAATAAGCAG+AGG 0.746627 3.3:+90414145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTAGATTTATATAAAA+TGG - chr3.3:90415676-90415695 MS.gene75304:intron 10.0%
!!! TTTTTTTTTCAAATTTATGA+TGG + chr3.3:90416834-90416853 None:intergenic 10.0%
!! AAATTATAATATACTACCTA+TGG - chr3.3:90415840-90415859 MS.gene75304:intron 15.0%
!! TATAAATCTAATGAAATAGT+AGG + chr3.3:90415671-90415690 None:intergenic 15.0%
!! TTCAGAAATATAAAATCTTA+AGG + chr3.3:90416338-90416357 None:intergenic 15.0%
!!! ACTAATTAATTTGATTTCAT+AGG - chr3.3:90413871-90413890 MS.gene75304:CDS 15.0%
!!! CTAATTAATTTGATTTCATA+GGG - chr3.3:90413872-90413891 MS.gene75304:CDS 15.0%
!!! TGATCAATTTTGAATTTATA+CGG + chr3.3:90414907-90414926 None:intergenic 15.0%
!!! TTGATTAGCTTATAATAAAA+AGG - chr3.3:90414134-90414153 MS.gene75304:intron 15.0%
!! TCAATTTCTTAAAAGAGAAA+TGG - chr3.3:90415793-90415812 MS.gene75304:intron 20.0%
!! TGCTTTCATAAATTATAGTT+AGG - chr3.3:90415751-90415770 MS.gene75304:intron 20.0%
!!! AGATTTTATATTTCTGAATC+AGG - chr3.3:90416340-90416359 MS.gene75304:CDS 20.0%
!!! ATGCGTAGTTTAAAATTAAA+TGG + chr3.3:90416882-90416901 None:intergenic 20.0%
!!! TAAAAATCAAATTGCTATTC+TGG + chr3.3:90414667-90414686 None:intergenic 20.0%
! AAAAAGCCTAGATATAACAT+TGG - chr3.3:90416850-90416869 MS.gene75304:CDS 25.0%
! AAGTTCTCAATATCTTTCTT+TGG + chr3.3:90413789-90413808 None:intergenic 25.0%
! ACTACGCATAATAATAGAAA+TGG - chr3.3:90416893-90416912 MS.gene75304:intron 25.0%
! GGAAAATATGATATGAACAT+AGG - chr3.3:90415913-90415932 MS.gene75304:intron 25.0%
! TACAAAGACAAAACTCTTTA+TGG + chr3.3:90416275-90416294 None:intergenic 25.0%
! TGACATTGAATTATTGAATG+AGG - chr3.3:90415441-90415460 MS.gene75304:intron 25.0%
! TTTCTAAACCAAAGTAATCA+TGG + chr3.3:90415144-90415163 None:intergenic 25.0%
!! GAATTTCATTTCTAGAAGAA+TGG + chr3.3:90413662-90413681 None:intergenic 25.0%
!! TAGTCAATCTAGATACTTTT+GGG - chr3.3:90416601-90416620 MS.gene75304:CDS 25.0%
!! TCATATCATATTTTCCTTCT+AGG + chr3.3:90415909-90415928 None:intergenic 25.0%
!! TCTAAAGCTTAGATTCTATA+AGG + chr3.3:90414740-90414759 None:intergenic 25.0%
!! TGAATTGCACTATGTTATTT+AGG - chr3.3:90414463-90414482 MS.gene75304:intron 25.0%
!! TTAGTCAATCTAGATACTTT+TGG - chr3.3:90416600-90416619 MS.gene75304:CDS 25.0%
!!! CATTTGTTTTTCACTTTTGT+TGG - chr3.3:90414925-90414944 MS.gene75304:intron 25.0%
!!! GAAATATTCGTTGATTTTGT+AGG - chr3.3:90413906-90413925 MS.gene75304:CDS 25.0%
!!! TCACCATGAATTTTGTTATT+TGG + chr3.3:90416996-90417015 None:intergenic 25.0%
AAAATATTCTGAATGTGCCT+TGG - chr3.3:90415981-90416000 MS.gene75304:intron 30.0%
AATGCCATTCATATATGACA+CGG - chr3.3:90415005-90415024 MS.gene75304:intron 30.0%
AATTGGGTGTTCATAATTCT+AGG - chr3.3:90416655-90416674 MS.gene75304:CDS 30.0%
AGTTTGAACCATGATTACTT+TGG - chr3.3:90415133-90415152 MS.gene75304:intron 30.0%
ATACCTGGAAATTATCTACA+CGG + chr3.3:90416759-90416778 None:intergenic 30.0%
ATATCTAGTTATTCATCCAC+TGG - chr3.3:90416240-90416259 MS.gene75304:intron 30.0%
ATTGACTAATACAGATGCAT+AGG + chr3.3:90416589-90416608 None:intergenic 30.0%
CAACACTTTCAAATTGTAGT+TGG - chr3.3:90416476-90416495 MS.gene75304:intron 30.0%
CTTACATTATTCCTTGATTC+AGG - chr3.3:90415347-90415366 MS.gene75304:CDS 30.0%
GAATCTCTACTTAACAATAG+AGG - chr3.3:90413830-90413849 MS.gene75304:CDS 30.0%
GCAATTAATGGAATTGAGTA+CGG + chr3.3:90416410-90416429 None:intergenic 30.0%
GCACCAAATAACAAAATTCA+TGG - chr3.3:90416990-90417009 MS.gene75304:CDS 30.0%
TATACTATTGTTCCTTGATC+TGG - chr3.3:90415172-90415191 MS.gene75304:CDS 30.0%
TATACTTGTTTGTACTGTGA+AGG + chr3.3:90414014-90414033 None:intergenic 30.0%
TGATTTCATAATCTCCTCAT+CGG + chr3.3:90413763-90413782 None:intergenic 30.0%
TTAGGATGTACAAATTACCA+AGG + chr3.3:90416001-90416020 None:intergenic 30.0%
TTCATATGCAAATTGATGTG+TGG - chr3.3:90416507-90416526 MS.gene75304:intron 30.0%
TTTACCGTGTCATATATGAA+TGG + chr3.3:90415012-90415031 None:intergenic 30.0%
TTTCACATCATATACTTGCA+GGG - chr3.3:90415508-90415527 MS.gene75304:intron 30.0%
! AAATCTATGAAGCACTTACA+CGG - chr3.3:90414542-90414561 MS.gene75304:intron 30.0%
! AGTCAATCTAGATACTTTTG+GGG - chr3.3:90416602-90416621 MS.gene75304:CDS 30.0%
! TATATTTCTGAATCAGGTGT+GGG - chr3.3:90416346-90416365 MS.gene75304:CDS 30.0%
! TGGAATTGAAGCATTCAATT+GGG - chr3.3:90416639-90416658 MS.gene75304:CDS 30.0%
! TTATATTTCTGAATCAGGTG+TGG - chr3.3:90416345-90416364 MS.gene75304:CDS 30.0%
! TTGGAATTGAAGCATTCAAT+TGG - chr3.3:90416638-90416657 MS.gene75304:CDS 30.0%
!! ATATGAACATAGGTGCTATT+GGG - chr3.3:90415923-90415942 MS.gene75304:intron 30.0%
!! GAACTTCAATGATTTGCTAA+AGG - chr3.3:90413803-90413822 MS.gene75304:intron 30.0%
!!! TATTCGTTGATTTTGTAGGA+AGG - chr3.3:90413910-90413929 MS.gene75304:intron 30.0%
!!! TCATCGATTTTTTTTGCCTT+TGG - chr3.3:90414175-90414194 MS.gene75304:CDS 30.0%
!!! TTTTTTTAGTCGTTCATAGC+TGG + chr3.3:90415965-90415984 None:intergenic 30.0%
AAAGCATGCTTGACAATTGT+TGG - chr3.3:90416192-90416211 MS.gene75304:intron 35.0%
AAGCACTACACATAACAAAC+CGG + chr3.3:90415736-90415755 None:intergenic 35.0%
ACAAAGTAGCATGATAGACA+AGG + chr3.3:90415041-90415060 None:intergenic 35.0%
ACAGGTCAACCAAATCATTT+GGG + chr3.3:90415087-90415106 None:intergenic 35.0%
AGAAGTTGAGAGGAATATGT+TGG - chr3.3:90415299-90415318 MS.gene75304:intron 35.0%
ATATATACCACCAACATTCG+CGG + chr3.3:90414432-90414451 None:intergenic 35.0%
ATTACTGGAATATCACTTGG+AGG - chr3.3:90415267-90415286 MS.gene75304:intron 35.0%
CATGATAAATCCTGTTTCCT+AGG + chr3.3:90414113-90414132 None:intergenic 35.0%
CTATAACTAAACGTAAGCAG+AGG + chr3.3:90414317-90414336 None:intergenic 35.0%
CTTTCACATCATATACTTGC+AGG - chr3.3:90415507-90415526 MS.gene75304:intron 35.0%
GGAATTACTGGAATATCACT+TGG - chr3.3:90415264-90415283 MS.gene75304:intron 35.0%
GGATTTGAAGAAACTCTGAT+CGG + chr3.3:90413571-90413590 None:intergenic 35.0%
GTTTAAGAGTAAGACCTAGA+AGG - chr3.3:90415892-90415911 MS.gene75304:intron 35.0%
TACAGGTCAACCAAATCATT+TGG + chr3.3:90415088-90415107 None:intergenic 35.0%
TATACTTGCAGGGATTTCAA+TGG - chr3.3:90415518-90415537 MS.gene75304:intron 35.0%
TTATTGCAGAACCTGGAATT+GGG - chr3.3:90416968-90416987 MS.gene75304:intron 35.0%
TTCAAGCTCAAAATCAACAC+AGG + chr3.3:90413952-90413971 None:intergenic 35.0%
TTGCAGCCAATGTTATATCT+AGG + chr3.3:90416859-90416878 None:intergenic 35.0%
TTTATGGAAATTCTGTCCAG+TGG + chr3.3:90416259-90416278 None:intergenic 35.0%
TTTATTGCAGAACCTGGAAT+TGG - chr3.3:90416967-90416986 MS.gene75304:intron 35.0%
! AAGTGCTATTGACAAAGAAG+TGG - chr3.3:90416074-90416093 MS.gene75304:intron 35.0%
! ACTCATTTTGTTCTACTCCT+AGG - chr3.3:90414093-90414112 MS.gene75304:intron 35.0%
! ATTTTGTAGGAAGGAGATCA+AGG - chr3.3:90413919-90413938 MS.gene75304:intron 35.0%
! GAATTTGCTCTGTTCTTCAA+TGG + chr3.3:90413549-90413568 None:intergenic 35.0%
! GATATGAACATAGGTGCTAT+TGG - chr3.3:90415922-90415941 MS.gene75304:intron 35.0%
! GTCAATCTAGATACTTTTGG+GGG - chr3.3:90416603-90416622 MS.gene75304:CDS 35.0%
! TTTATGATGGAGTCCACATT+TGG + chr3.3:90416821-90416840 None:intergenic 35.0%
!! ACTTTTGTTGGTTAACCCTT+GGG - chr3.3:90414937-90414956 MS.gene75304:intron 35.0%
!! AGTATTAAGCCGGTTTTTGA+AGG - chr3.3:90415577-90415596 MS.gene75304:intron 35.0%
!! CTTCAATGATTTGCTAAAGG+AGG - chr3.3:90413806-90413825 MS.gene75304:intron 35.0%
!! TACCTATGGATTAGAGTACA+TGG - chr3.3:90415854-90415873 MS.gene75304:intron 35.0%
!!! GGTCAAATTTTTTGTATGCC+TGG + chr3.3:90416738-90416757 None:intergenic 35.0%
!!! TGTGTTGATTTTGAGCTTGA+AGG - chr3.3:90413951-90413970 MS.gene75304:intron 35.0%
!!! TTGGGGGTTTTGATTTAACT+TGG - chr3.3:90416619-90416638 MS.gene75304:CDS 35.0%
AAACCGGTACATGGTTACTA+GGG + chr3.3:90415720-90415739 None:intergenic 40.0%
AATACATACATCGCGATAGG+TGG + chr3.3:90414288-90414307 None:intergenic 40.0%
ACACATAACAAACCGGTACA+TGG + chr3.3:90415729-90415748 None:intergenic 40.0%
ACCCTTGGGGTAAAAATAAC+AGG - chr3.3:90414951-90414970 MS.gene75304:intron 40.0%
ACTTTGTGCCCCAAATGATT+TGG - chr3.3:90415075-90415094 MS.gene75304:intron 40.0%
AGGTCTTCTTGTCTGCTTAT+CGG + chr3.3:90413980-90413999 None:intergenic 40.0%
AGTAGCATGATAGACAAGGA+AGG + chr3.3:90415037-90415056 None:intergenic 40.0%
ATCACCGTACCTTCAAAAAC+CGG + chr3.3:90415589-90415608 None:intergenic 40.0%
ATGCATGCATTCCTGAATCA+AGG + chr3.3:90415361-90415380 None:intergenic 40.0%
CACCATGTACTCTAATCCAT+AGG + chr3.3:90415859-90415878 None:intergenic 40.0%
CAGGTCAACCAAATCATTTG+GGG + chr3.3:90415086-90415105 None:intergenic 40.0%
CAGTAATTCCTATCCTAGAG+GGG + chr3.3:90415254-90415273 None:intergenic 40.0%
CCAGTAATTCCTATCCTAGA+GGG + chr3.3:90415255-90415274 None:intergenic 40.0%
CTACCATTGAGAATAAGCAG+AGG + chr3.3:90416440-90416459 None:intergenic 40.0%
CTTATATCCGCATGGAAAAC+CGG - chr3.3:90414976-90414995 MS.gene75304:intron 40.0%
GCAAATACATACATCGCGAT+AGG + chr3.3:90414291-90414310 None:intergenic 40.0%
GCTTATGTTTCTCTCTGTGA+AGG + chr3.3:90414881-90414900 None:intergenic 40.0%
GGTGTGGGACTTGATTAAAT+TGG - chr3.3:90415197-90415216 MS.gene75304:CDS 40.0%
GGTGTTCATAATTCTAGGTG+CGG - chr3.3:90416660-90416679 MS.gene75304:intron 40.0%
TAACCCTAGTAACCATGTAC+CGG - chr3.3:90415714-90415733 MS.gene75304:intron 40.0%
TAGTAAGCAACCTCAAGCAA+CGG + chr3.3:90414051-90414070 None:intergenic 40.0%
TATGAATGGCATTGTGTCTC+CGG + chr3.3:90414998-90415017 None:intergenic 40.0%
TCCAGTAATTCCTATCCTAG+AGG + chr3.3:90415256-90415275 None:intergenic 40.0%
TGACCGTGTAGATAATTTCC+AGG - chr3.3:90416753-90416772 MS.gene75304:CDS 40.0%
TGAGTACGGAGAATCAAACT+GGG + chr3.3:90416396-90416415 None:intergenic 40.0%
TGCTAATATGAGTGCATACC+TGG + chr3.3:90416774-90416793 None:intergenic 40.0%
TGCTATTGACAAAGAAGTGG+TGG - chr3.3:90416077-90416096 MS.gene75304:intron 40.0%
TGGTGAAAGAGTCATCTGAT+TGG - chr3.3:90417010-90417029 MS.gene75304:CDS 40.0%
TTGAGTACGGAGAATCAAAC+TGG + chr3.3:90416397-90416416 None:intergenic 40.0%
TTGATTCAGGAATGCATGCA+TGG - chr3.3:90415360-90415379 MS.gene75304:CDS 40.0%
TTGTTCTACTCCTAGGAAAC+AGG - chr3.3:90414100-90414119 MS.gene75304:intron 40.0%
! AAATCATTTGGGGCACAAAG+TGG + chr3.3:90415076-90415095 None:intergenic 40.0%
! ATAATCTCCTCATCGGTTGA+TGG + chr3.3:90413756-90413775 None:intergenic 40.0%
! TAGTCTGTGAAGCACTTACA+CGG - chr3.3:90414334-90414353 MS.gene75304:intron 40.0%
!! CACTTTTGTTGGTTAACCCT+TGG - chr3.3:90414936-90414955 MS.gene75304:intron 40.0%
!! CTTGACAATTGTTGGTGCTA+TGG - chr3.3:90416200-90416219 MS.gene75304:intron 40.0%
!! CTTTTGTTGGTTAACCCTTG+GGG - chr3.3:90414938-90414957 MS.gene75304:intron 40.0%
!! TAAGCCGGTTTTTGAAGGTA+CGG - chr3.3:90415582-90415601 MS.gene75304:CDS 40.0%
!! TCGAGTTGACAGTATTAAGC+CGG - chr3.3:90415567-90415586 MS.gene75304:intron 40.0%
!! TCTGTTGATTCTCGTTACCA+TGG - chr3.3:90414242-90414261 MS.gene75304:intron 40.0%
!!! AGCCTGTTATTTTTACCCCA+AGG + chr3.3:90414956-90414975 None:intergenic 40.0%
!!! GCCTGTTATTTTTACCCCAA+GGG + chr3.3:90414955-90414974 None:intergenic 40.0%
AACAGGCTCTTATATCCGCA+TGG - chr3.3:90414968-90414987 MS.gene75304:intron 45.0%
AATCTCACACCTGCCAAATG+TGG - chr3.3:90416805-90416824 MS.gene75304:CDS 45.0%
ACGCAGTTTATTGCAGAACC+TGG - chr3.3:90416961-90416980 MS.gene75304:intron 45.0%
ACGTCTTTCGCAGTAGATAC+TGG - chr3.3:90416305-90416324 MS.gene75304:intron 45.0%
ACTGCAAACATGAACCCAAG+AGG + chr3.3:90416033-90416052 None:intergenic 45.0%
AGAGGACGTGGTGCAATTAA+TGG + chr3.3:90416422-90416441 None:intergenic 45.0%
ATACATAGCCATCGAGATCG+TGG + chr3.3:90413629-90413648 None:intergenic 45.0%
ATATCTACGTCCGTTGCTTG+AGG - chr3.3:90414038-90414057 MS.gene75304:intron 45.0%
CAAACCGGTACATGGTTACT+AGG + chr3.3:90415721-90415740 None:intergenic 45.0%
CATAGACAACGATAAGTGGC+AGG - chr3.3:90415543-90415562 MS.gene75304:intron 45.0%
CGTCCTCTGCTTATTCTCAA+TGG - chr3.3:90416434-90416453 MS.gene75304:intron 45.0%
CTAAAGCCTCAACTTATGCC+CGG - chr3.3:90417045-90417064 MS.gene75304:CDS 45.0%
CTATTGTTCCTTGATCTGGC+AGG - chr3.3:90415176-90415195 MS.gene75304:CDS 45.0%
CTGCAAACATGAACCCAAGA+GGG + chr3.3:90416032-90416051 None:intergenic 45.0%
CTGGAATATCACTTGGAGGT+TGG - chr3.3:90415271-90415290 MS.gene75304:intron 45.0%
CTGTGAAGGAAAACAACTGC+AGG + chr3.3:90414000-90414019 None:intergenic 45.0%
GAGAAGATATAGACCCCTCT+AGG - chr3.3:90415238-90415257 MS.gene75304:intron 45.0%
GGAGGAAAGTTATGCACCAT+TGG + chr3.3:90413735-90413754 None:intergenic 45.0%
GGTCCATAGACAACGATAAG+TGG - chr3.3:90415539-90415558 MS.gene75304:intron 45.0%
GTGATGTGTCACGACAAACT+TGG + chr3.3:90415328-90415347 None:intergenic 45.0%
GTTGGTTGAGAGAAGTTGAG+AGG - chr3.3:90415289-90415308 MS.gene75304:intron 45.0%
TACAATCCGGGCATAAGTTG+AGG + chr3.3:90417054-90417073 None:intergenic 45.0%
TCAAACTGGGAAGCTAAACC+AGG + chr3.3:90416383-90416402 None:intergenic 45.0%
TCTTGGGTTCATGTTTGCAG+TGG - chr3.3:90416032-90416051 MS.gene75304:intron 45.0%
TGCCGTTGGAATTTCCAATC+CGG + chr3.3:90416707-90416726 None:intergenic 45.0%
TGCGCTAATGCTTTCATCGA+TGG + chr3.3:90415114-90415133 None:intergenic 45.0%
TGTAGGAAGGAGATCAAGGA+CGG - chr3.3:90413923-90413942 MS.gene75304:intron 45.0%
TGTTGAAACTCGCTATGCTG+TGG - chr3.3:90415394-90415413 MS.gene75304:intron 45.0%
TTGAGAATAAGCAGAGGACG+TGG + chr3.3:90416434-90416453 None:intergenic 45.0%
! CTGCCACTTATCGTTGTCTA+TGG + chr3.3:90415545-90415564 None:intergenic 45.0%
! TGACAAAGAAGTGGTGGAGA+AGG - chr3.3:90416083-90416102 MS.gene75304:intron 45.0%
! TGCCGGATTGGAAATTCCAA+CGG - chr3.3:90416702-90416721 MS.gene75304:intron 45.0%
! TTTGCGACTTGGACGGTTAA+CGG + chr3.3:90413711-90413730 None:intergenic 45.0%
!! CCCTCTAGGATAGGAATTAC+TGG - chr3.3:90415252-90415271 MS.gene75304:intron 45.0%
!! GATATAGACCCCTCTAGGAT+AGG - chr3.3:90415243-90415262 MS.gene75304:intron 45.0%
!! GTTATTTGGTGCCCAATTCC+AGG + chr3.3:90416982-90417001 None:intergenic 45.0%
!!! CATTGGTTTTGCGACTTGGA+CGG + chr3.3:90413718-90413737 None:intergenic 45.0%
CAACGTTTCCACGATCTCGA+TGG - chr3.3:90413618-90413637 MS.gene75304:CDS 50.0%
CCTAATGCTCTTGCCCTCTT+GGG - chr3.3:90416016-90416035 MS.gene75304:intron 50.0%
CGTCCAAGTCGCAAAACCAA+TGG - chr3.3:90413716-90413735 MS.gene75304:intron 50.0%
CGTGGAAACGTTGTACCTTG+AGG + chr3.3:90413611-90413630 None:intergenic 50.0%
CGTTCTTTGCACGTTCACCA+TGG + chr3.3:90414262-90414281 None:intergenic 50.0%
CTTGAGGAGGTCGTCTGTTA+CGG + chr3.3:90413595-90413614 None:intergenic 50.0%
CTTTCCTCCATCAACCGATG+AGG - chr3.3:90413746-90413765 MS.gene75304:intron 50.0%
GCAGTGGCTCGTGATGATTT+GGG - chr3.3:90416048-90416067 MS.gene75304:intron 50.0%
GCCTGAAACACGAAGACCAA+AGG + chr3.3:90414194-90414213 None:intergenic 50.0%
GCGGTCTGACACAACACTTA+CGG + chr3.3:90414413-90414432 None:intergenic 50.0%
GCTTTCATCGATGGAGCTAC+AGG + chr3.3:90415105-90415124 None:intergenic 50.0%
GGAAACGTTGTACCTTGAGG+AGG + chr3.3:90413608-90413627 None:intergenic 50.0%
GGAATTTCCAATCCGGCAAC+AGG + chr3.3:90416700-90416719 None:intergenic 50.0%
GTCACCTGAACACCAATCAG+AGG + chr3.3:90415425-90415444 None:intergenic 50.0%
TCCTAATGCTCTTGCCCTCT+TGG - chr3.3:90416015-90416034 MS.gene75304:intron 50.0%
TGATGGAGTCCACATTTGGC+AGG + chr3.3:90416817-90416836 None:intergenic 50.0%
TGCAGTGGCTCGTGATGATT+TGG - chr3.3:90416047-90416066 MS.gene75304:intron 50.0%
TTCCTTGATCTGGCAGGTGT+GGG - chr3.3:90415182-90415201 MS.gene75304:CDS 50.0%
TTCTAGGTGCGGAAGATCCT+AGG - chr3.3:90416671-90416690 MS.gene75304:intron 50.0%
TTCTGAATCAGGTGTGGGAC+AGG - chr3.3:90416351-90416370 MS.gene75304:CDS 50.0%
TTGTGTCAGACCGCGAATGT+TGG - chr3.3:90414419-90414438 MS.gene75304:intron 50.0%
TTTCAGGCATATGCTTCGCG+AGG - chr3.3:90414206-90414225 MS.gene75304:CDS 50.0%
! GCCTTTGGTCTTCGTGTTTC+AGG - chr3.3:90414190-90414209 MS.gene75304:CDS 50.0%
! TGAAGCACTTACACGGACAC+AGG - chr3.3:90414341-90414360 MS.gene75304:intron 50.0%
! TGCTCCTCTGATTGGTGTTC+AGG - chr3.3:90415418-90415437 MS.gene75304:intron 50.0%
! TGTGTCTCCGGTTTTCCATG+CGG + chr3.3:90414986-90415005 None:intergenic 50.0%
!! ATCTCCTCATCGGTTGATGG+AGG + chr3.3:90413753-90413772 None:intergenic 50.0%
!!! GCACCATTGGTTTTGCGACT+TGG + chr3.3:90413722-90413741 None:intergenic 50.0%
AATCCGGCAACAGGACACCT+AGG + chr3.3:90416691-90416710 None:intergenic 55.0%
CGTAACAGACGACCTCCTCA+AGG - chr3.3:90413593-90413612 MS.gene75304:CDS 55.0%
GATCCTAGGTGTCCTGTTGC+CGG - chr3.3:90416685-90416704 MS.gene75304:intron 55.0%
GCTGTGGTTGCTCCTCTGAT+TGG - chr3.3:90415410-90415429 MS.gene75304:intron 55.0%
GTTCCTTGATCTGGCAGGTG+TGG - chr3.3:90415181-90415200 MS.gene75304:CDS 55.0%
TAGGTGTCCTGTTGCCGGAT+TGG - chr3.3:90416690-90416709 MS.gene75304:intron 55.0%
TCCAACGGCAAAAGCAAGCC+AGG - chr3.3:90416717-90416736 MS.gene75304:intron 55.0%
TGTCAGACCGCGAATGTTGG+TGG - chr3.3:90414422-90414441 MS.gene75304:intron 55.0%
!! CCCAAGAGGGCAAGAGCATT+AGG + chr3.3:90416019-90416038 None:intergenic 55.0%
GAGGAGGTCGTCTGTTACGG+AGG + chr3.3:90413592-90413611 None:intergenic 60.0%
GTCCCACACCTGCCAGATCA+AGG + chr3.3:90415187-90415206 None:intergenic 60.0%
GTGTGGGACAGGATTGCTCC+TGG - chr3.3:90416362-90416381 MS.gene75304:CDS 60.0%
!!! GCCTGGCTTGCTTTTGCCGT+TGG + chr3.3:90416721-90416740 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 90413530 90417074 90413530 ID=MS.gene75304
chr3.3 mRNA 90413530 90417074 90413530 ID=MS.gene75304.t1;Parent=MS.gene75304
chr3.3 exon 90416990 90417074 90416990 ID=MS.gene75304.t1.exon1;Parent=MS.gene75304.t1
chr3.3 CDS 90416990 90417074 90416990 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90416753 90416898 90416753 ID=MS.gene75304.t1.exon2;Parent=MS.gene75304.t1
chr3.3 CDS 90416753 90416898 90416753 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90416545 90416676 90416545 ID=MS.gene75304.t1.exon3;Parent=MS.gene75304.t1
chr3.3 CDS 90416545 90416676 90416545 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90416306 90416392 90416306 ID=MS.gene75304.t1.exon4;Parent=MS.gene75304.t1
chr3.3 CDS 90416306 90416392 90416306 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90415578 90415631 90415578 ID=MS.gene75304.t1.exon5;Parent=MS.gene75304.t1
chr3.3 CDS 90415578 90415631 90415578 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90415316 90415406 90415316 ID=MS.gene75304.t1.exon6;Parent=MS.gene75304.t1
chr3.3 CDS 90415316 90415406 90415316 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90415165 90415235 90415165 ID=MS.gene75304.t1.exon7;Parent=MS.gene75304.t1
chr3.3 CDS 90415165 90415235 90415165 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90415006 90415075 90415006 ID=MS.gene75304.t1.exon8;Parent=MS.gene75304.t1
chr3.3 CDS 90415006 90415075 90415006 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90414500 90414552 90414500 ID=MS.gene75304.t1.exon9;Parent=MS.gene75304.t1
chr3.3 CDS 90414500 90414552 90414500 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90414149 90414242 90414149 ID=MS.gene75304.t1.exon10;Parent=MS.gene75304.t1
chr3.3 CDS 90414149 90414242 90414149 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90413830 90413927 90413830 ID=MS.gene75304.t1.exon11;Parent=MS.gene75304.t1
chr3.3 CDS 90413830 90413927 90413830 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
chr3.3 exon 90413530 90413637 90413530 ID=MS.gene75304.t1.exon12;Parent=MS.gene75304.t1
chr3.3 CDS 90413530 90413637 90413530 ID=cds.MS.gene75304.t1;Parent=MS.gene75304.t1
Gene Sequence

>MS.gene75304

ATGGAAGAAAATGGCGCCATTGAAGAACAGAGCAAATTCCGATCAGAGTTTCTTCAAATCCTCCGTAACAGACGACCTCCTCAAGGTACAACGTTTCCACGATCTCGATGGCTATGTATTGATTGTTCACCATTCTTCTAGAAATGAAATTCGTTTGTTATATATGTTTGTTTCAGTTCCGTTAACCGTCCAAGTCGCAAAACCAATGGTGCATAACTTTCCTCCATCAACCGATGAGGAGATTATGAAATCATGTCCAAAGAAAGATATTGAGAACTTCAATGATTTGCTAAAGGAGGAGAATCTCTACTTAACAATAGAGGTAGTTATTATAATAATTAACTAATTAATTTGATTTCATAGGGACGTTGAAATTGAAATATTCGTTGATTTTGTAGGAAGGAGATCAAGGACGGTTGCCTGTGTTGATTTTGAGCTTGAAGGAAACCGATAAGCAGACAAGAAGACCTGCAGTTGTTTTCCTTCACAGTACAAACAAGTATAAAGAATATCTACGTCCGTTGCTTGAGGTTGCTTACTACATTTTCTCAGCTTCAATCATCACTCATTTTGTTCTACTCCTAGGAAACAGGATTTATCATGATTGATTAGCTTATAATAAAAAGGATTTATGATTTATTATAATCATCGATTTTTTTTGCCTTTGGTCTTCGTGTTTCAGGCATATGCTTCGCGAGGATATATAGCAATTTCTGTTGATTCTCGTTACCATGGTGAACGTGCAAAGAACGCAACCACCTATCGCGATGTATGTATTTGCTTTCCTCTGCTTACGTTTAGTTATAGTCTGTGAAGCACTTACACGGACACACGAGACTGACACATAGATATTGATAATAACTTGAGAAAATAGAAGTCACCGTAAGTGTTGTGTCAGACCGCGAATGTTGGTGGTATATATTTTTCAATCAATGAATTGCACTATGTTATTTAGGAAAAAGATTTAGCTGATGCTCAAACTTCAATCTACTCAGAGAAGAAAAAAAAAAAAAAATCTATGAAGCACTTACACGGACACAGGAAAATGAACTGCAACTTATTCAAAGTATTCAAAGTAGCTGAAATAAATTATATATTACACATAAAGTAAATTATTAGTTCAGAAAATGAATTCCAGAATAGCAATTTGATTTTTAAATTAAAACAAAATGACATTTTAGTGATTTTGAATAAGTTGTGAAAGTTGCCTTATAGAATCTAAGCTTTAGAATAAGTAATTTGTCATTTATATTTATGTTTTTCTGTTCATCACATCTTTATATATAAAAGAAATTAACTATTGTTTTTTGACTGAAAACTATTTTTCTGCAATATTACTACTTGAGATCCTTCACAGAGAGAAACATAAGCAGTCCGTATAAATTCAAAATTGATCATTTGTTTTTCACTTTTGTTGGTTAACCCTTGGGGTAAAAATAACAGGCTCTTATATCCGCATGGAAAACCGGAGACACAATGCCATTCATATATGACACGGTAAATTCCTTCCTTGTCTATCATGCTACTTTGTTGTTTAACTTAGCCACTTTGTGCCCCAAATGATTTGGTTGACCTGTAGCTCCATCGATGAAAGCATTAGCGCAGTTTGAACCATGATTACTTTGGTTTAGAAATAATGTATTATACTATTGTTCCTTGATCTGGCAGGTGTGGGACTTGATTAAATTGGCAGATTATCTAACAGAGAGAGAAGATATAGACCCCTCTAGGATAGGAATTACTGGAATATCACTTGGAGGTTGGTTGAGAGAAGTTGAGAGGAATATGTTGGATACCAAGTTTGTCGTGACACATCACTTACATTATTCCTTGATTCAGGAATGCATGCATGGTTTGCTGCAGCTGTTGAAACTCGCTATGCTGTGGTTGCTCCTCTGATTGGTGTTCAGGTGACATTGAATTATTGAATGAGGATTATATTTAACAAGATGTGCTTCTGAAACAACAATTTCAACACTTTCACATCATATACTTGCAGGGATTTCAATGGTCCATAGACAACGATAAGTGGCAGGCTCGAGTTGACAGTATTAAGCCGGTTTTTGAAGGTACGGTGATGTATTGTTTCTGAAATTTCTTGTATTTCACGTGTTTTATGCTTTGCTTTAGTTATTGCTCCTACTATTTCATTAGATTTATATAAAATGGAAGTCACTGTTCATATAACCCTAGTAACCATGTACCGGTTTGTTATGTGTAGTGCTTTCATAAATTATAGTTAGGATTTCATATGTAATGTCAATCAATTTCTTAAAAGAGAAATGGTCTCGTTTATGATTCATTATTTATAAATTATAATATACTACCTATGGATTAGAGTACATGGTGAAGTTAGAATCGTGTTTAAGAGTAAGACCTAGAAGGAAAATATGATATGAACATAGGTGCTATTGGGTACTTATTCAAGTTTGCCAGCTATGAACGACTAAAAAAATATTCTGAATGTGCCTTGGTAATTTGTACATCCTAATGCTCTTGCCCTCTTGGGTTCATGTTTGCAGTGGCTCGTGATGATTTGGGCAAAAGTGCTATTGACAAAGAAGTGGTGGAGAAGGTCAGCTAAGTTTTTATAATTCTAGCTATAATTGTCTCGAGACTTCAAATGAATTTCTATATGCTTTGATATGTTTACTACTTTAAGAAAGCATGCTTGACAATTGTTGGTGCTATGGTACATTAATCTACTATAATATCTAGTTATTCATCCACTGGACAGAATTTCCATAAAGAGTTTTGTCTTTGTAAGTCAATTTTACGTCTTTCGCAGTAGATACTGGATACTAACCTTAAGATTTTATATTTCTGAATCAGGTGTGGGACAGGATTGCTCCTGGTTTAGCTTCCCAGTTTGATTCTCCGTACTCAATTCCATTAATTGCACCACGTCCTCTGCTTATTCTCAATGGTAGTATTTTGTTGTTTATTCAACACTTTCAAATTGTAGTTGGAAATAATATTCATATGCAAATTGATGTGTGGAAAGCACTACAATACAAGTTTTGCACTTCTTAATTATATATCAATTACTTAGTAGACCTATGCATCTGTATTAGTCAATCTAGATACTTTTGGGGGTTTTGATTTAACTTGGAATTGAAGCATTCAATTGGGTGTTCATAATTCTAGGTGCGGAAGATCCTAGGTGTCCTGTTGCCGGATTGGAAATTCCAACGGCAAAAGCAAGCCAGGCATACAAAAAATTTGACCGTGTAGATAATTTCCAGGTATGCACTCATATTAGCACTTTGTTGAGAAATCTCACACCTGCCAAATGTGGACTCCATCATAAATTTGAAAAAAAAAAGCCTAGATATAACATTGGCTGCAACCATTTAATTTTAAACTACGCATAATAATAGAAATGGTAATGAAGTCGCTTGAACTAAATCTTTGCAATTGATTGCTTTGATACGCAGTTTATTGCAGAACCTGGAATTGGGCACCAAATAACAAAATTCATGGTGAAAGAGTCATCTGATTGGTTTGACAAGTTTCTAAAGCCTCAACTTATGCCCGGATTGTAA

Protein sequence

>MS.gene75304.t1

MEENGAIEEQSKFRSEFLQILRNRRPPQVPLTVQVAKPMVHNFPPSTDEEIMKSCPKKDIENFNDLLKEENLYLTIEEGDQGRLPVLILSLKETDKQTRRPAVVFLHSTNKYKEYLRPLLEAYASRGYIAISVDSRYHGERAKNATTYRDALISAWKTGDTMPFIYDTVWDLIKLADYLTEREDIDPSRIGITGISLGGMHAWFAAAVETRYAVVAPLIGVQGFQWSIDNDKWQARVDSIKPVFEVARDDLGKSAIDKEVVEKVWDRIAPGLASQFDSPYSIPLIAPRPLLILNGAEDPRCPVAGLEIPTAKASQAYKKFDRVDNFQFIAEPGIGHQITKFMVKESSDWFDKFLKPQLMPGL