Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75880.t1 | XP_003595505.1 | 99.6 | 928 | 4 | 0 | 1 | 928 | 63 | 990 | 0.00E+00 | 1826.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75880.t1 | Q2UVJ5 | 82.3 | 926 | 150 | 5 | 5 | 928 | 62 | 975 | 0.0e+00 | 1531.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75880.t1 | G7IGJ1 | 99.6 | 928 | 4 | 0 | 1 | 928 | 63 | 990 | 0.0e+00 | 1826.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene75880 | -0.82354 | 1.31E-53 | -1.69E-46 |
| MS.gene050170 | MS.gene75880 | -0.814453 | 1.53E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene75880 | -0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene75880 | -0.840335 | 9.25E-58 | -1.69E-46 |
| MS.gene050868 | MS.gene75880 | -0.80628 | 8.88E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene75880 | -0.806896 | 6.58E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene75880 | -0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene052015 | MS.gene75880 | 0.856974 | 2.24E-62 | -1.69E-46 |
| MS.gene052164 | MS.gene75880 | -0.801346 | 9.40E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene75880 | 0.864521 | 1.15E-64 | -1.69E-46 |
| MS.gene053097 | MS.gene75880 | 0.809481 | 1.85E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene75880 | -0.801034 | 1.09E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene75880 | -0.801172 | 1.02E-48 | -1.69E-46 |
| MS.gene054344 | MS.gene75880 | -0.811487 | 6.83E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene75880 | -0.852906 | 3.40E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene75880 | -0.823653 | 1.23E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene75880 | -0.80034 | 1.51E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene75880 | -0.833635 | 4.76E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene75880 | -0.836812 | 7.51E-57 | -1.69E-46 |
| MS.gene058544 | MS.gene75880 | -0.82059 | 6.33E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene75880 | -0.846852 | 1.67E-59 | -1.69E-46 |
| MS.gene059103 | MS.gene75880 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene05914 | MS.gene75880 | -0.823847 | 1.11E-53 | -1.69E-46 |
| MS.gene059480 | MS.gene75880 | 0.814168 | 1.77E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene75880 | -0.805156 | 1.53E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene75880 | -0.828038 | 1.12E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene75880 | -0.815166 | 1.06E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 14600 | gene | 51784 | 67570 | 51784 | ID=MS.gene75880 |
| 14600 | mRNA | 51784 | 67570 | 51784 | ID=MS.gene75880.t1;Parent=MS.gene75880 |
| 14600 | exon | 67421 | 67570 | 67421 | ID=MS.gene75880.t1.exon1;Parent=MS.gene75880.t1 |
| 14600 | CDS | 67421 | 67570 | 67421 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 66919 | 66997 | 66919 | ID=MS.gene75880.t1.exon2;Parent=MS.gene75880.t1 |
| 14600 | CDS | 66919 | 66997 | 66919 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 64540 | 64631 | 64540 | ID=MS.gene75880.t1.exon3;Parent=MS.gene75880.t1 |
| 14600 | CDS | 64540 | 64631 | 64540 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 63761 | 63875 | 63761 | ID=MS.gene75880.t1.exon4;Parent=MS.gene75880.t1 |
| 14600 | CDS | 63761 | 63875 | 63761 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 61329 | 61429 | 61329 | ID=MS.gene75880.t1.exon5;Parent=MS.gene75880.t1 |
| 14600 | CDS | 61329 | 61429 | 61329 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 61106 | 61167 | 61106 | ID=MS.gene75880.t1.exon6;Parent=MS.gene75880.t1 |
| 14600 | CDS | 61106 | 61167 | 61106 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 59181 | 59408 | 59181 | ID=MS.gene75880.t1.exon7;Parent=MS.gene75880.t1 |
| 14600 | CDS | 59181 | 59408 | 59181 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 57870 | 57984 | 57870 | ID=MS.gene75880.t1.exon8;Parent=MS.gene75880.t1 |
| 14600 | CDS | 57870 | 57984 | 57870 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 55254 | 55448 | 55254 | ID=MS.gene75880.t1.exon9;Parent=MS.gene75880.t1 |
| 14600 | CDS | 55254 | 55448 | 55254 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 54505 | 54905 | 54505 | ID=MS.gene75880.t1.exon10;Parent=MS.gene75880.t1 |
| 14600 | CDS | 54505 | 54905 | 54505 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 53881 | 54042 | 53881 | ID=MS.gene75880.t1.exon11;Parent=MS.gene75880.t1 |
| 14600 | CDS | 53881 | 54042 | 53881 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| 14600 | exon | 51784 | 52871 | 51784 | ID=MS.gene75880.t1.exon12;Parent=MS.gene75880.t1 |
| 14600 | CDS | 51784 | 52871 | 51784 | ID=cds.MS.gene75880.t1;Parent=MS.gene75880.t1 |
| Gene Sequence |
| Protein sequence |
