AlfalfaGEDB | MS.gene77299

M. sativa cultivar XinJiangDaYe / MS.gene77299

KEGG: K06119
GO: -
PFAM: PF00534.23 PF13439.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77299.t1	XP_003623219.2	99	407	4	0	35	441	109	515	2.70E-227	797.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77299.t1	Q8S4F6	78.7	409	87	0	31	439	101	509	1.1e-186	654.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77299.t1	G7L6J3	99.0	407	4	0	35	441	109	515	1.9e-227	797.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene77299	0.807935	3.96E-50	-1.69E-46
MS.gene049609	MS.gene77299	0.815844	7.51E-52	-1.69E-46
MS.gene049794	MS.gene77299	0.805725	1.16E-49	-1.69E-46
MS.gene050520	MS.gene77299	0.83166	1.47E-55	-1.69E-46
MS.gene050593	MS.gene77299	0.834273	3.30E-56	-1.69E-46
MS.gene050670	MS.gene77299	0.811458	6.93E-51	-1.69E-46
MS.gene050772	MS.gene77299	0.80456	2.04E-49	-1.69E-46
MS.gene051255	MS.gene77299	0.818795	1.63E-52	-1.69E-46
MS.gene051360	MS.gene77299	0.819518	1.11E-52	-1.69E-46
MS.gene051387	MS.gene77299	0.824048	9.97E-54	-1.69E-46

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77299.t1	MTR_7g067340	96.882	449	5	2	1	441	68	515	0.0	887
MS.gene77299.t1	MTR_4g015260	79.817	436	88	0	3	438	74	509	0.0	730
MS.gene77299.t1	MTR_4g015260	83.422	374	62	0	65	438	1	374	0.0	658
MS.gene77299.t1	MTR_4g015250	70.588	34	10	0	382	415	1	34	9.34e-13	63.5

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77299.t1	AT5G01220	80.097	412	82	0	28	439	98	509	0.0	703
MS.gene77299.t1	AT5G01220	84.161	322	51	0	28	349	98	419	0.0	570

Showing 1 to 2 of 2 entries

Previous1Next

Find 115 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGCACGTAATGAAA+TGG	0.426643	7.2:+36268034	MS.gene77299:CDS
AAACCCTTGATAGTTCATGT+TGG	0.620136	7.2:+36266818	MS.gene77299:CDS
AAAGAGTTGAGAGAAACCAT+AGG	0.627134	7.2:+36268011	MS.gene77299:CDS
AACAATACAATGCTGCTATT+TGG	0.214966	7.2:+36268099	MS.gene77299:CDS
AACACTTGGCTTCGTTGTTT+TGG	0.243869	7.2:+36267836	MS.gene77299:CDS
AACATTCCTGTGAATACTGC+AGG	0.502201	7.2:-36267747	None:intergenic
AACTCTTTGTCGAACAAAAG+GGG	0.558837	7.2:-36267996	None:intergenic
AAGATATACCTTTAGTTGGC+TGG	0.423693	7.2:+36266290	MS.gene77299:CDS
AAGATTCGTCTTTGGAACAA+AGG	0.579970	7.2:+36266647	MS.gene77299:CDS
AAGCAGTCTTCAAGATCACC+TGG	0.548870	7.2:-36267960	None:intergenic

Showing 1 to 10 of 115 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAATACAATGCTGCTATT+TGG	+	chr7.2:36268099-36268118	MS.gene77299:CDS	30.0%
AAGCTGTCAAGTTTGATATT+TGG	+	chr7.2:36263567-36263586	MS.gene77299:intron	30.0%
ACAATTTGCATTATCTAGAG+AGG	-	chr7.2:36267641-36267660	None:intergenic	30.0%
ACCTATAGAAGAAAAGATGA+CGG	+	chr7.2:36263162-36263181	MS.gene77299:intron	30.0%
AGAAACCAAAACAATCACAA+TGG	-	chr7.2:36262574-36262593	None:intergenic	30.0%
AGATCTAGAGATTAATGAGT+TGG	+	chr7.2:36263317-36263336	MS.gene77299:intron	30.0%
AGCCATTATATGATTTGAGA+TGG	-	chr7.2:36267175-36267194	None:intergenic	30.0%
ATCAAATGTCTTCGAGAAAT+GGG	+	chr7.2:36264463-36264482	MS.gene77299:CDS	30.0%
ATGAAATGCGATTAAGACTA+AGG	+	chr7.2:36266708-36266727	MS.gene77299:CDS	30.0%
ATGTATCAGGATACAAAAAC+CGG	+	chr7.2:36264428-36264447	MS.gene77299:CDS	30.0%

Showing 1 to 10 of 370 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	36262327	36268211	36262327	ID=MS.gene77299
chr7.2	mRNA	36262327	36268211	36262327	ID=MS.gene77299.t1;Parent=MS.gene77299
chr7.2	exon	36262327	36262463	36262327	ID=MS.gene77299.t1.exon1;Parent=MS.gene77299.t1
chr7.2	CDS	36262327	36262463	36262327	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36264426	36264492	36264426	ID=MS.gene77299.t1.exon2;Parent=MS.gene77299.t1
chr7.2	CDS	36264426	36264492	36264426	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36264700	36264770	36264700	ID=MS.gene77299.t1.exon3;Parent=MS.gene77299.t1
chr7.2	CDS	36264700	36264770	36264700	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36265606	36265723	36265606	ID=MS.gene77299.t1.exon4;Parent=MS.gene77299.t1
chr7.2	CDS	36265606	36265723	36265606	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36265838	36265911	36265838	ID=MS.gene77299.t1.exon5;Parent=MS.gene77299.t1
chr7.2	CDS	36265838	36265911	36265838	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36266281	36266336	36266281	ID=MS.gene77299.t1.exon6;Parent=MS.gene77299.t1
chr7.2	CDS	36266281	36266336	36266281	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36266420	36266503	36266420	ID=MS.gene77299.t1.exon7;Parent=MS.gene77299.t1
chr7.2	CDS	36266420	36266503	36266420	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36266642	36266729	36266642	ID=MS.gene77299.t1.exon8;Parent=MS.gene77299.t1
chr7.2	CDS	36266642	36266729	36266642	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36266802	36266879	36266802	ID=MS.gene77299.t1.exon9;Parent=MS.gene77299.t1
chr7.2	CDS	36266802	36266879	36266802	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36267011	36267067	36267011	ID=MS.gene77299.t1.exon10;Parent=MS.gene77299.t1
chr7.2	CDS	36267011	36267067	36267011	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1
chr7.2	exon	36267716	36268211	36267716	ID=MS.gene77299.t1.exon11;Parent=MS.gene77299.t1
chr7.2	CDS	36267716	36268211	36267716	ID=cds.MS.gene77299.t1;Parent=MS.gene77299.t1

Gene Sequence

>MS.gene77299

ATGGATAAAGCAGAAGTTGATTCACATGATGAAGGAGAAGATAAGGAAGAGGGTACTTCTTCTTCTTCTTCTACTGAAAATGAGAGGAATTCAAGGCCTCGTCGAATTGCTCTCTTTGTTGAACCTTCTCCATTTGCGTGAGTCCCATTTTTGTGTATGTTTTTATTTGTTCTTTAATTTGAATTGTATTGGGTAATGCTTTATTGAATTCGGATGTGTGTAATTGATGTTGAAATTGAAACTCCCATTGTGATTGTTTTGGTTTCTTGATTTGCTCTTTATTTTACATAGTTTCCAACGCTATCAAGTCAACACTATAACCAGTGGTGTAATGTCTAGGAAAGTGTAGTCCAATGGTATGAGTTTATACAGGGAATGAGGTTCATCATCATAAGCGTATGACTTCCGTCTGAGTAGAAGTAAGACAGAGTATATGGAATGTAATTTTAGCAAAAGGCGGAGCTTTTCTAGCTTAGAGGTGAAAGTTGGAGATCATCTCATACCACAAGTTACATGGTTTAAATATATTGGGTCAATAATACAAAATGACGGAGAAATAGAAGGAGGTGTAAACCATTGAATTCAAGCTGGGTGGTTTAAATGGAGGAGGACCTTAGGTGTTTCATTTGACGTAAAAAACCGCTCAAGCTAAAGGATATTTTTTTATCGAACAGCTGTAAGACTGACAATGTTGTACTTGACTGAGTGTTGGGCTGTAAGGAACCAACACAAAAATAAATTATGCATAGCAGAGATGAGGATGGTGTTGGATGTGTTGTAAGACTAGATAGGATATGATTAGAAATGATAACATTAGAGAGAGATCTATGGTAGCACCTATAGAAGAAAAGATGACGGAAACTAGGCTTAGGTGGTTTGGGCATGTAGAGAGAAGACCCGTGGACTATAGCAAGGACTAAGGAGAGTAAGTCAGATGGAGGGGATTCAAATCACTAGAGGTAGAAGAAGACCTGGAAAAACTATTTAGAAAGATCTAGAGATTAATGAGTTGGATAGAAATATGGATTTGATAGAACATTATGGCGTCGTTTAATCTATGTATCGGATCCCACTTAGTAGGATAAGGCATGGTTGTTATTGTTGTTGTTGCAGATTTTGCAGCAATTGAACTGTCTTGTTGGCTAGGTTTTAGCGTTTAATTGGAACAGTTTGATGAATTTACTGAGTTGGCATGTATTTTTCAGCCAAAAGTTTTAGGTGTATTTTTATTTCCTTTATTAAGCTGTCAAGTTTGATATTTGGTTCATCTGAAGTGTTGTTTGCTTAGCGGTGTTTAGGTAACATGCTTTCCACGATTAGCTGTTTGAAAACCAGAAAAACTATTATTCAGTTTTGGTGTTTCTTAACATGGTTGCTATTCTACCCTAGAAATCACAAATTTGTAACCCGATACGTATATGATATGATATGCACACAGATAAGATAAATTTTAAAATTATAGGATGCGATGCTACAATGATAAACATGAATATATAGTCAAATGACGGAATTGATGTTTGGAAAGTTAGAATAAATAGTTGTAAAGTGTACAGATTATGAGATATTAGAATTATCATTTTGGTCTTTGATAGTGGCAAATGTGTTGCTTTGGTCCTAAAGCTGTTAAGTATGCACATACTAATCTCTGAATGTTCAACTTCTTCACACAAGTTCATCTTTCTTGATTCCCAAATTCATCCTTTTTGTTAACTACTGTTTATATTTATGCAATGAAATTGCTGACATGGCTTGTTAACTACATAGTAGTAGAGAGCATTAAGTGTCACGTGTTACCTACTTTCCCGAACGGTGGATTAATAAAGCCGAAGGATGGATTTGTGAAGTCGACACATTCACGGACTAATTTGTACACATTCCAGTAATGAAAACAACATAAGTTATCACTTATAGAAACTAAATTTTGTATATTACTCATGTCTCATTATAGTTACTGTCTGCATAGTAATCCAATTGAAGTCGAACTAAAATTGGCATAACTCATGTGTCATTCTTCGAAAGATGTTTTTATGTTAGGTGTGAGAAAAATGATATGTATATTCTTAACAGAAACTTTGTTCTTGGCGGTATCTATTTTACAGATATGTATCAGGATACAAAAACCGGTTTCAGAATTTTATCAAATGTCTTCGAGAAATGGGAGATGAGGTAACTTTTCTACTTGTTTTGCATCAGGGTATGCACATGTTGATTTTCCTTAAATTTTTGGCATTTTTTGTACAGTATCCCCAAATATTCAAAGAAAATCAGGAGTAGATAGCTTCTCCACTGTGAATATATTGATTCGACATTTATCATATATTTTTTTTCTTTTTCATTGCATACTAACTACTTATGTTTATTTGTCTCTTATAGGTAATGGTTGTGACAACACATAAAGGAGTGCCCCAAGAATTTTATGGAGCCAAATTAATAGGATCTTGGAGGTTGCTTATACTGATCTCTATTAATTTCTTAACACATATCTCTTCGTTACATCTCTGATTTACTTGTAATTCTAGATTAATTGTTTCTGAATCATATTAAACTCTGTTTTTTGGTTACAATGAGTTTATTTCTTGTTTGTCAATTTATTTTGTTGAATATAATTGCTAACTGTCAATTCCTTATGGCCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACATCTTTTGCTAGCATATGTTGTGCATTTAATTTAAAATTTCACCAGGAAGTACTAAGTACTTGCGGCATTCCTATTATCATGATTTTATGATTTTTGATGCTCTGATTACAATGTAGAATGTGAGTAATTTGATATACTCTTTAAAAGTATGATTACTACCATAAAGATCAATAATGATGTCTGTGTGTTTGAATTACAAAATAGAGGCTAAATTGTATAATAATTATAAGATTCTATCATCTTAATGGATTTAATTCATATACATCGTTAGTGTAAAGATTTGTTACACTGTCAATAAATTATAATTGTCAGATGACTCATAGCATTAAAAACGTTTGACTTCAATCATAACTACTTCTAAAATCACAGATATGATTGGTTGTGATTTATTGACAGCGTAAAACTTTTTACACTGACGGTGTATCAAAATCAAACTCTTTATTACCACAATCACAAAATTTGGTTTGCCTTTTCATGTATTTTCGAACAACTATCAGTAACATATTTTGCACTAATACTTTTTGTTTCCAAAACGCAAATTGGAAATTCAGCTTTCCCCTCCCTTGGTATCAGAACGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTCAAGCCTGACATAATACATGCATCATCACCAGGCATAATGGTTGGTCTGCAGTTCTTATGTCTCCTTATTTACTAAATTTTGACGTTAATAAGCATAAGGTTGCTGTGAAGACTTATTTGTCACATTTCATGTCTGATACTACCTTATTTTCAGGTTTTTGGTGCTCTTATCATTGCAAAACTATTGTCTGTTCCAATTGTCATGTCCTATCATACCCATGTACCAGTGTAAGTTTCAGTCAGATTTCACGTTTTCTGAATATATTTACCACTTTAGATAACACGACGGCTCTTACATATATGATTGTTCTAAGACAACAATATGATGTCTGATCTGGTCTATATTAAATTATGTACTGCTTATGTTGGAAGTGTTTAACATGGACCGTAGTATTAAAACACAAGTTGTACTTTATAAACCCTAAGCTTGATTAATAGAAAGGTGATGCAGCCGCTCTGCAGTCGGAGACATAGACACACTTGGCCGAACACCATGATCAAATATCATGTTTTCTCCTTTTGCACTTCTCGTATCTTTTTACTTTTGAACCAGATTGCTATGCTAACAGCTTATTTTTTATCTTATTGTGTCTCCAGATACATTCCAAGATATACCTTTAGTTGGCTGGTGAAACCGATGTGGTTGGTCATAAGTATGTATACTTTCTTGCTTACTTTTTTCCTATATGGACTCAAATATTTATGAGCATAGCATAAATTTTGGCGTTTCATGTAGAATTTCTTCACAGAGCAGCTGACCTGACTCTGGTGCCGTCTGTTGCCATTGGGAGAGATCTTCAAGCGGCTAGAGTTACAGCAGGTGAACATAGAATCCCCTTATCTAGTCGTTTTATCAATGCTTAGTTGATAACATAGTTTAAATATACGCATTTCTCGGCATGCCTTTGTCAATGCAGCAAAATTTTTAGACTAACTTCTTTCTTTTATTGATATCCAGCTAACAAGATTCGTCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCACGATTCCGTTCACATGAAATGCGATTAAGACTAAGGTTTGAACCTTTTGTCATTTTTTCGTTATTTAGAAGTTTTTTTAATGATCAGTTTTCATCTTATTCTTACAGCAACGGTGAACCTGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAAAAGAGTTTAGGTTTTATAAAAGGGTAGAGAAAACTTTATCTTGCAATTTGCTTAACTTTCTCTGATGTTTCTTACCATGCCAAATAATATATCTTTCATAGGAATTTAAATATCTGTACACTTTGTTTGACACCTGAACCAAATGGTTTTGCAGGGTCATGGATAAGCTTCCTGAAGCTCGAGTTGCTTTCATCGGAGATGGACCGTACAGGTGACTTATTATGACATGTCGCTACTTTCATATCTGTTCCAGTTGTGTATGACAGCTTTTAACTAATGGATTTCTATGAATGTACTTTATTATTCTTGCCTCTTCCATCTCAAATCATATAATGGCTAACCGCCATCATGAAATGGATTTTCTTGTTTCATGTTTAGAACGTGTTTGGATTGACTTATGAACAGTTTATTTGGGTTTATTTATTAGCATAAACAATTATGAGTGTTTGGGTGAACTTACGAAAACAACTTAACTTATCATATGCTTATAAGTTCTTTTAAGCTAATTTCAATAAGGTCTCCAAAGAGCTTATGAACACAGATTATACTTTATAGGTTATCTGAAAACAGTTTGACTAGATTTTATCTTTGATAGTTGAATTAGCATATAGATAAGAACTTATATGATAAGTGTTTATCCGATAACCACTTAATTAAGTTGTTTATCCAAGCATACCCTTATTCTCTTTCTTTTGAGGATTTGGAGGAGACTTCGCCTCTGTCTAGCGATTTCAGTCCAAATCTCATTCTCAATATTTTATGTTTATATATCATCTTCATCCCTCTCTAGATAATGCAAATTGTTAAATATGAACACTTTGGCAACTTTTAGTAGTATGATGAGTTCTTTAACTACCAGGGAGGAGCTAGAGAAAATGTTTGAAGGTATGCCTGCAGTATTCACAGGAATGTTAGGAGGGGAAGTACTCTCTCAAGCATATGCTAGTGGAGATGTATTTATCATGCCTTCAGAGTCAGAAACACTTGGCTTCGTTGTTTTGGAGGCCATGTCTTCTGGGATACCTGTGGTGGCAGCACGCGCAGGAGGCATTCCAGATATAATTCCTGCGGATCAAGAAGGTAAAACCGGCTATCTCTATAATCCAGGTGATCTTGAAGACTGCTTGAGTAAATTGAAACCCCTTTTGTTCGACAAAGAGTTGAGAGAAACCATAGGAAAAGCTGCACGTAATGAAATGGAAAAATTTGATTGGAAGGCCGCCACACGAAAGGTTAGAAATGAACAATACAATGCTGCTATTTGGTTCTGGCGCAAGAAAAGGGCGATATTATTGAGACCCTTACAATGGATCAGTAAACGTGTTTTCCCATCACCACAAGTTAACTATAGATGA

Protein sequence

>MS.gene77299.t1

MDKAEVDSHDEGEDKEEGTSSSSSTENERNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQEFYGAKLIGSWSFPLPWYQNVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGRDLQAARVTAANKIRLWNKGVDSESFHPRFRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLGFIKGVMDKLPEARVAFIGDGPYREELEKMFEGMPAVFTGMLGGEVLSQAYASGDVFIMPSESETLGFVVLEAMSSGIPVVAARAGGIPDIIPADQEGKTGYLYNPGDLEDCLSKLKPLLFDKELRETIGKAARNEMEKFDWKAATRKVRNEQYNAAIWFWRKKRAILLRPLQWISKRVFPSPQVNYR