Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79095.t1 | XP_003601923.1 | 97.9 | 720 | 15 | 0 | 1 | 720 | 1 | 720 | 0.00E+00 | 1375.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79095.t1 | Q54Q92 | 27.6 | 605 | 352 | 15 | 1 | 543 | 4 | 584 | 7.2e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79095.t1 | G7J381 | 97.9 | 720 | 15 | 0 | 1 | 720 | 1 | 720 | 0.0e+00 | 1375.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene79095 | 0.810085 | 1.37E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene79095 | 0.811876 | 5.62E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene79095 | 0.811112 | 8.24E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene79095 | 0.819004 | 1.46E-52 | -1.69E-46 |
| MS.gene050213 | MS.gene79095 | 0.842059 | 3.26E-58 | -1.69E-46 |
| MS.gene050257 | MS.gene79095 | 0.833982 | 3.90E-56 | -1.69E-46 |
| MS.gene050258 | MS.gene79095 | 0.832567 | 8.78E-56 | -1.69E-46 |
| MS.gene050359 | MS.gene79095 | 0.81524 | 1.02E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene79095 | 0.831541 | 1.57E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene79095 | 0.815093 | 1.10E-51 | -1.69E-46 |
| MS.gene050931 | MS.gene79095 | 0.808653 | 2.79E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene79095 | 0.82154 | 3.83E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene79095 | 0.803711 | 3.06E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene79095 | 0.830863 | 2.31E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene79095 | 0.81846 | 1.94E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene79095 | 0.835622 | 1.51E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene79095 | 0.842289 | 2.83E-58 | -1.69E-46 |
| MS.gene053143 | MS.gene79095 | 0.846852 | 1.67E-59 | -1.69E-46 |
| MS.gene054004 | MS.gene79095 | 0.821003 | 5.09E-53 | -1.69E-46 |
| MS.gene054178 | MS.gene79095 | 0.814232 | 1.71E-51 | -1.69E-46 |
| MS.gene054413 | MS.gene79095 | 0.803372 | 3.60E-49 | -1.69E-46 |
| MS.gene054585 | MS.gene79095 | 0.826915 | 2.09E-54 | -1.69E-46 |
| MS.gene056578 | MS.gene79095 | 0.84652 | 2.06E-59 | -1.69E-46 |
| MS.gene056881 | MS.gene79095 | 0.814619 | 1.40E-51 | -1.69E-46 |
| MS.gene057174 | MS.gene79095 | 0.815676 | 8.18E-52 | -1.69E-46 |
| MS.gene058292 | MS.gene79095 | 0.814473 | 1.51E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene79095 | 0.807004 | 6.25E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene79095 | 0.811569 | 6.56E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene79095 | 0.859405 | 4.23E-63 | -1.69E-46 |
| MS.gene060522 | MS.gene79095 | 0.828934 | 6.82E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene79095 | 0.848025 | 7.97E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene79095 | 0.806565 | 7.73E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene79095 | 0.828149 | 1.06E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene79095 | 0.848556 | 5.69E-60 | -1.69E-46 |
| MS.gene061160 | MS.gene79095 | 0.805573 | 1.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79095.t1 | MTR_3g086840 | 97.917 | 720 | 15 | 0 | 1 | 720 | 1 | 720 | 0.0 | 1460 |
| MS.gene79095.t1 | MTR_8g089925 | 80.028 | 721 | 138 | 4 | 1 | 718 | 1 | 718 | 0.0 | 1206 |
| MS.gene79095.t1 | MTR_8g089925 | 78.173 | 591 | 123 | 4 | 131 | 718 | 1 | 588 | 0.0 | 965 |
| MS.gene79095.t1 | MTR_4g094110 | 64.246 | 716 | 232 | 10 | 1 | 709 | 1 | 699 | 0.0 | 916 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79095.t1 | AT5G65290 | 71.196 | 736 | 190 | 9 | 1 | 720 | 1 | 730 | 0.0 | 1039 |
| MS.gene79095.t1 | AT5G65290 | 78.519 | 540 | 110 | 3 | 1 | 536 | 1 | 538 | 0.0 | 870 |
Find 170 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAACGCCGTCCCTTTATT+TGG | 0.138899 | 3.2:-74149826 | MS.gene79095:CDS |
| TTCTCGTCCCTGCTGATATT+TGG | 0.160912 | 3.2:-74158388 | MS.gene79095:CDS |
| AAACCACAAGGCGGGCAATT+AGG | 0.191717 | 3.2:-74155191 | MS.gene79095:CDS |
| TCAAATATAGTTTCTTTATT+AGG | 0.194715 | 3.2:+74150525 | None:intergenic |
| GTTACTGGTGCATTTCTTCT+TGG | 0.201801 | 3.2:-74156175 | MS.gene79095:CDS |
| ATGGAGGTATTTCTTTCTTT+TGG | 0.213086 | 3.2:-74157751 | MS.gene79095:CDS |
| GGTGCATTTCTTCTTGGTTT+TGG | 0.219379 | 3.2:-74156169 | MS.gene79095:CDS |
| GTTAACTGAGCTGGTTTGTC+TGG | 0.226512 | 3.2:+74150728 | None:intergenic |
| CAAAATTTATCCGCTTATTA+TGG | 0.237697 | 3.2:-74149791 | MS.gene79095:CDS |
| TATTATTTGCAGAATTCTTT+TGG | 0.241151 | 3.2:-74151990 | MS.gene79095:intron |
| ATGACTTGCTCAAATACTTT+TGG | 0.241273 | 3.2:-74156202 | MS.gene79095:CDS |
| TGTCTCTTCATCCATAGTTT+TGG | 0.243444 | 3.2:+74149194 | None:intergenic |
| AACCACAAGGCGGGCAATTA+GGG | 0.255023 | 3.2:-74155190 | MS.gene79095:CDS |
| CATCTTCAAAACCTTGAATA+AGG | 0.267615 | 3.2:+74157132 | None:intergenic |
| TTAAACCTGTCCCCAAATAA+AGG | 0.272474 | 3.2:+74149814 | None:intergenic |
| ACAACGCCGTCCCTTTATTT+GGG | 0.282924 | 3.2:-74149825 | MS.gene79095:CDS |
| AGCAAGTACGCTGCAATTAG+AGG | 0.298768 | 3.2:-74149138 | MS.gene79095:CDS |
| TGAGGAAGTTGTATGATATA+GGG | 0.300928 | 3.2:+74150565 | None:intergenic |
| TCTCGTCCCTGCTGATATTT+GGG | 0.304058 | 3.2:-74158387 | MS.gene79095:CDS |
| CAAAACTGAAGCAGAGGATA+TGG | 0.304694 | 3.2:-74149689 | MS.gene79095:CDS |
| TGCAGCGTACTTGCTGCTTA+TGG | 0.304776 | 3.2:+74149146 | None:intergenic |
| GGGATCCTTATTTAATACTT+TGG | 0.324766 | 3.2:-74154369 | MS.gene79095:CDS |
| AAGCAGGAGTGGGAGCCTTA+TGG | 0.325612 | 3.2:-74156233 | MS.gene79095:intron |
| GGATCCTTATTTAATACTTT+GGG | 0.327645 | 3.2:-74154368 | MS.gene79095:intron |
| TTGAGGAAGTTGTATGATAT+AGG | 0.327982 | 3.2:+74150564 | None:intergenic |
| TACTACTCTTTGTTCAAAAT+CGG | 0.331193 | 3.2:-74150777 | MS.gene79095:CDS |
| CAATAGCATTGGAAAGTTCT+TGG | 0.333733 | 3.2:+74156038 | None:intergenic |
| CATCCAGTTTGACAGCCATT+TGG | 0.337713 | 3.2:+74156068 | None:intergenic |
| TGGAGCACCATCTTCGGGTT+TGG | 0.340533 | 3.2:-74149019 | MS.gene79095:CDS |
| ATCCAGTTTGACAGCCATTT+GGG | 0.348188 | 3.2:+74156069 | None:intergenic |
| ATTACCCAAAGTATTAAATA+AGG | 0.349352 | 3.2:+74154364 | None:intergenic |
| TTCAGCTGGAGCACCATCTT+CGG | 0.350183 | 3.2:-74149025 | MS.gene79095:CDS |
| CGGAGGTATATCCAAAACTA+TGG | 0.350526 | 3.2:-74149205 | MS.gene79095:CDS |
| TGCCCAAATGGCTGTCAAAC+TGG | 0.351462 | 3.2:-74156071 | MS.gene79095:CDS |
| AGCACCATTCCCGTTGTTAG+AGG | 0.360366 | 3.2:+74158503 | None:intergenic |
| CTTGAACAAGGGCGCAAAAT+CGG | 0.364439 | 3.2:-74149490 | MS.gene79095:CDS |
| TATGGTTACATACACCGTTT+TGG | 0.368794 | 3.2:-74149773 | MS.gene79095:CDS |
| TTGAACAAGGGCGCAAAATC+GGG | 0.378695 | 3.2:-74149489 | MS.gene79095:CDS |
| GCAATTAGGGGAAAATGATA+TGG | 0.380335 | 3.2:-74155177 | MS.gene79095:CDS |
| TCAGCTGGAGCACCATCTTC+GGG | 0.382820 | 3.2:-74149024 | MS.gene79095:CDS |
| AGCAGGGACGAGAATGATAA+TGG | 0.384683 | 3.2:+74158397 | None:intergenic |
| ATCTTCAAAACCTTGAATAA+GGG | 0.385541 | 3.2:+74157133 | None:intergenic |
| GTGAAATTCCTAAAAGCATC+TGG | 0.388838 | 3.2:-74156141 | MS.gene79095:CDS |
| TATGAACGCCGCAAGTCAAC+TGG | 0.391408 | 3.2:-74154563 | MS.gene79095:CDS |
| TTCCCACAAAATTGCCCAAA+TGG | 0.393163 | 3.2:-74156083 | MS.gene79095:CDS |
| AGCAGAGGATATGGATGGTT+TGG | 0.400479 | 3.2:-74149680 | MS.gene79095:CDS |
| ACATCTGCTTGGAAGTTGCT+TGG | 0.405047 | 3.2:+74155391 | None:intergenic |
| CAACGGACTTGATATTGAAT+CGG | 0.409675 | 3.2:-74149434 | MS.gene79095:CDS |
| AGCAGGAGTGGGAGCCTTAT+GGG | 0.410727 | 3.2:-74156232 | MS.gene79095:intron |
| GCTGTGGCACCCCTTATTCA+AGG | 0.413324 | 3.2:-74157143 | MS.gene79095:CDS |
| CCTGTTCGGACTGGCAAGTT+GGG | 0.417625 | 3.2:-74154389 | MS.gene79095:CDS |
| TCGTCAATAACATTCATATA+AGG | 0.419796 | 3.2:+74155348 | None:intergenic |
| CATCTGCTTGGAAGTTGCTT+GGG | 0.419895 | 3.2:+74155392 | None:intergenic |
| TATCTAATTGTGGGATCCAT+TGG | 0.421566 | 3.2:-74157050 | MS.gene79095:CDS |
| TGACGATATGCTTACTCAAA+TGG | 0.422170 | 3.2:-74155331 | MS.gene79095:intron |
| TTCATCAAGCGCAGAATAAG+AGG | 0.422203 | 3.2:+74149068 | None:intergenic |
| CTTGGTCTTCTATCTAATTG+TGG | 0.424052 | 3.2:-74157060 | MS.gene79095:CDS |
| TATCTATGATTGCAGCGAAT+GGG | 0.425215 | 3.2:-74149856 | MS.gene79095:intron |
| CTAAACTAAGGCGTCATCTT+CGG | 0.426988 | 3.2:-74155127 | MS.gene79095:CDS |
| CCTCGTCATTGTAAGTAACT+TGG | 0.428128 | 3.2:+74148830 | None:intergenic |
| TTCTTCTTCAGTAATTAAAT+CGG | 0.439054 | 3.2:+74149230 | None:intergenic |
| CAGAGTTTCAAGTCCAACAT+AGG | 0.440272 | 3.2:-74148964 | MS.gene79095:CDS |
| CCGCCTTGTGGTTTGAATGA+AGG | 0.440418 | 3.2:+74155200 | None:intergenic |
| CCCAACTTGCCAGTCCGAAC+AGG | 0.446107 | 3.2:+74154389 | None:intergenic |
| AGCACGTATCTAGGAACATC+TGG | 0.446451 | 3.2:+74158455 | None:intergenic |
| CCGTCCCTTTATTTGGGGAC+AGG | 0.447195 | 3.2:-74149819 | MS.gene79095:CDS |
| GATGAAGAGACAAGGAGATA+TGG | 0.447213 | 3.2:-74149183 | MS.gene79095:CDS |
| ATCTCGCTTCCTCTAACAAC+GGG | 0.449941 | 3.2:-74158512 | MS.gene79095:CDS |
| AACGGACTTGATATTGAATC+GGG | 0.450684 | 3.2:-74149433 | MS.gene79095:CDS |
| TTGGTCTTCTATCTAATTGT+GGG | 0.454361 | 3.2:-74157059 | MS.gene79095:CDS |
| TTAAGGAAACAAGTTGAGAA+AGG | 0.458142 | 3.2:-74151958 | MS.gene79095:CDS |
| TTCTTCTCATTATGATGCAC+AGG | 0.460422 | 3.2:-74157013 | MS.gene79095:CDS |
| TCTTATTCTGCGCTTGATGA+AGG | 0.462589 | 3.2:-74149066 | MS.gene79095:CDS |
| TTATCGTATCTTCCAACTCA+AGG | 0.467532 | 3.2:+74154591 | None:intergenic |
| CAGATGCACATGTACATTAG+TGG | 0.471011 | 3.2:+74150804 | None:intergenic |
| CATAAGTAAGTTAACTGAGC+TGG | 0.472174 | 3.2:+74150719 | None:intergenic |
| TAAAGAAACTATATTTGAAA+AGG | 0.474544 | 3.2:-74150520 | MS.gene79095:intron |
| TAAGTAACTTGGTTCAAAGA+TGG | 0.475479 | 3.2:+74148841 | None:intergenic |
| GACTAGTGTGCATGTTAACT+TGG | 0.477495 | 3.2:-74157078 | MS.gene79095:CDS |
| TTGTTAGAGGAAGCGAGATC+AGG | 0.477817 | 3.2:+74158516 | None:intergenic |
| TGAGTATATAACTTATGTAC+TGG | 0.479540 | 3.2:-74154618 | MS.gene79095:CDS |
| TAAACCTGTCCCCAAATAAA+GGG | 0.479597 | 3.2:+74149815 | None:intergenic |
| AGAGTTTCAAGTCCAACATA+GGG | 0.488494 | 3.2:-74148963 | MS.gene79095:CDS |
| ATCCCGCTTGGACATCTGCT+TGG | 0.488961 | 3.2:+74155380 | None:intergenic |
| GCGCAAAATCGGGGAAGAGC+AGG | 0.491919 | 3.2:-74149479 | MS.gene79095:CDS |
| GAGGAAGTTGTATGATATAG+GGG | 0.492511 | 3.2:+74150566 | None:intergenic |
| CAACGCCGTCCCTTTATTTG+GGG | 0.494059 | 3.2:-74149824 | MS.gene79095:CDS |
| TTAATTACTGAAGAAGAAAA+CGG | 0.496066 | 3.2:-74149225 | MS.gene79095:CDS |
| GCATCTGGAGAAATGCTGAT+TGG | 0.499524 | 3.2:-74156126 | MS.gene79095:CDS |
| TCCCCTAATTGCCCGCCTTG+TGG | 0.501900 | 3.2:+74155188 | None:intergenic |
| ACCTGTTCGGACTGGCAAGT+TGG | 0.503123 | 3.2:-74154390 | MS.gene79095:CDS |
| ATCACTTACAACAATAGCAT+TGG | 0.505667 | 3.2:+74156027 | None:intergenic |
| GTACGCTGCAATTAGAGGGC+AGG | 0.507649 | 3.2:-74149133 | MS.gene79095:CDS |
| TCATTATGATGCACAGGACC+TGG | 0.509715 | 3.2:-74157007 | MS.gene79095:intron |
| TTAACTGAGCTGGTTTGTCT+GGG | 0.512639 | 3.2:+74150729 | None:intergenic |
| ACGGCAAACACAGGAAAATA+CGG | 0.512908 | 3.2:-74148920 | MS.gene79095:CDS |
| TGTAAAATAATTAGTCCGGA+TGG | 0.513683 | 3.2:+74149655 | None:intergenic |
| TATAAAATCCGTTCGAACAC+AGG | 0.517451 | 3.2:-74151842 | MS.gene79095:CDS |
| AGGAGTATTATAGATACAAA+AGG | 0.519923 | 3.2:-74155094 | MS.gene79095:intron |
| AAGTCATGGCAAATCCCATA+AGG | 0.521001 | 3.2:+74156218 | None:intergenic |
| ACGGTGAAAAGCACGTATCT+AGG | 0.525843 | 3.2:+74158446 | None:intergenic |
| CTTCGGGTTTGGCTTCGACA+TGG | 0.526937 | 3.2:-74149008 | MS.gene79095:CDS |
| ATAGCTTCTCACAATGAGAA+TGG | 0.527440 | 3.2:-74157770 | MS.gene79095:CDS |
| TTCACGTTGAGGTACTTCGC+TGG | 0.527462 | 3.2:-74158479 | MS.gene79095:CDS |
| GATCTCGCTTCCTCTAACAA+CGG | 0.537993 | 3.2:-74158513 | MS.gene79095:CDS |
| GACCGAGGCGAATGAGATTG+AGG | 0.539105 | 3.2:+74150547 | None:intergenic |
| AGTAATTCTAGAAATTCAGC+TGG | 0.539123 | 3.2:-74149039 | MS.gene79095:CDS |
| AGAAGTCAATGGCTAAACTA+AGG | 0.542357 | 3.2:-74155139 | MS.gene79095:CDS |
| TATCGTATCTTCCAACTCAA+GGG | 0.546729 | 3.2:+74154592 | None:intergenic |
| ATGGATGGTTTGGATCCATC+CGG | 0.547244 | 3.2:-74149670 | MS.gene79095:CDS |
| ATTCAAGCATCAGACCTGTT+CGG | 0.547965 | 3.2:-74154403 | MS.gene79095:CDS |
| TTCCTCAATCTCATTCGCCT+CGG | 0.548073 | 3.2:-74150549 | MS.gene79095:CDS |
| TGTACTGGAAGCCCTTGAGT+TGG | 0.550473 | 3.2:-74154603 | MS.gene79095:CDS |
| AACACAGGAGCTACTTGTGC+AGG | 0.550794 | 3.2:-74151827 | MS.gene79095:intron |
| AGCATCAGACCTGTTCGGAC+TGG | 0.552727 | 3.2:-74154398 | MS.gene79095:CDS |
| GAGCGGTCTTGGCTTGAACA+AGG | 0.552878 | 3.2:-74149502 | MS.gene79095:CDS |
| GTCGAAGCCAAACCCGAAGA+TGG | 0.553952 | 3.2:+74149012 | None:intergenic |
| AGTACCGCCCAAATATCAGC+AGG | 0.559037 | 3.2:+74158380 | None:intergenic |
| TACGCTGCAATTAGAGGGCA+GGG | 0.559127 | 3.2:-74149132 | MS.gene79095:CDS |
| CCGTTGAAATTCCTAGCAAG+TGG | 0.563702 | 3.2:+74149451 | None:intergenic |
| CAGGAAAATACGGTCTCTCG+TGG | 0.565236 | 3.2:-74148910 | MS.gene79095:CDS |
| GAAGTTGCTTGCAACCAAAA+CGG | 0.565444 | 3.2:+74149759 | None:intergenic |
| ATCTATGATTGCAGCGAATG+GGG | 0.568014 | 3.2:-74149855 | MS.gene79095:intron |
| GCAAGTACGCTGCAATTAGA+GGG | 0.570104 | 3.2:-74149137 | MS.gene79095:CDS |
| CTTCATTCAAACCACAAGGC+GGG | 0.573322 | 3.2:-74155199 | MS.gene79095:CDS |
| TGACACAGATGAGAAGTCAA+TGG | 0.574831 | 3.2:-74155150 | MS.gene79095:CDS |
| AGCAGGTTGTTCCACTTGCT+AGG | 0.574893 | 3.2:-74149462 | MS.gene79095:CDS |
| TCTTCAAAACCTTGAATAAG+GGG | 0.580909 | 3.2:+74157134 | None:intergenic |
| AAGTAGCTCCTGTGTTCGAA+CGG | 0.584062 | 3.2:+74151834 | None:intergenic |
| AATAATTCCGAAAAGACCAA+TGG | 0.585598 | 3.2:+74157034 | None:intergenic |
| TTCCAAGCAGATGTCCAAGC+GGG | 0.587731 | 3.2:-74155382 | MS.gene79095:CDS |
| GTGGGAAAGAACTTTCTGGC+GGG | 0.588522 | 3.2:+74156099 | None:intergenic |
| GTATTTCTTCAGGAGAGGAA+CGG | 0.591443 | 3.2:-74149273 | MS.gene79095:intron |
| ACATGGCAAACAATGAAGAC+AGG | 0.594497 | 3.2:-74148991 | MS.gene79095:CDS |
| CCACTTGCTAGGAATTTCAA+CGG | 0.597233 | 3.2:-74149451 | MS.gene79095:CDS |
| AAAAGTATTTGAGCAAGTCA+TGG | 0.600122 | 3.2:+74156204 | None:intergenic |
| AGCGGTCTTGGCTTGAACAA+GGG | 0.602451 | 3.2:-74149501 | MS.gene79095:CDS |
| AGGTCTCAAAGGATCCCGCT+TGG | 0.604904 | 3.2:+74155368 | None:intergenic |
| TTTACCCCTACGGCAAACAC+AGG | 0.604921 | 3.2:-74148929 | MS.gene79095:CDS |
| CGTCCCTGCTGATATTTGGG+CGG | 0.611244 | 3.2:-74158384 | MS.gene79095:intron |
| TCATCTTCGGAATGCTCGTG+AGG | 0.613725 | 3.2:-74155114 | MS.gene79095:CDS |
| TAGTTTCTTTATTAGGACCG+AGG | 0.614327 | 3.2:+74150532 | None:intergenic |
| ACATTCATATAAGGTCTCAA+AGG | 0.619065 | 3.2:+74155357 | None:intergenic |
| CCAAGTTACTTACAATGACG+AGG | 0.620005 | 3.2:-74148830 | MS.gene79095:CDS |
| GCTTCCTCTAACAACGGGAA+TGG | 0.622110 | 3.2:-74158507 | MS.gene79095:CDS |
| CTGCAATTAGAGGGCAGGGT+GGG | 0.622483 | 3.2:-74149128 | MS.gene79095:CDS |
| AAAAGCGATAGATCAATGCT+AGG | 0.623744 | 3.2:+74151874 | None:intergenic |
| CAAACCATCCAGTTGACTTG+CGG | 0.625928 | 3.2:+74154555 | None:intergenic |
| TGAACAAGGGCGCAAAATCG+GGG | 0.626860 | 3.2:-74149488 | MS.gene79095:CDS |
| ACCACAAGGCGGGCAATTAG+GGG | 0.627913 | 3.2:-74155189 | MS.gene79095:CDS |
| AGGAAGTTGTATGATATAGG+GGG | 0.634202 | 3.2:+74150567 | None:intergenic |
| ACTGAAGCAGAGGATATGGA+TGG | 0.638835 | 3.2:-74149685 | MS.gene79095:CDS |
| CCTGTCCCCAAATAAAGGGA+CGG | 0.643271 | 3.2:+74149819 | None:intergenic |
| GTGTATGTAACCATAATAAG+CGG | 0.646657 | 3.2:+74149781 | None:intergenic |
| CTCATCAAGTGACTCAGACG+AGG | 0.649535 | 3.2:+74148885 | None:intergenic |
| GAGTTTCAAGTCCAACATAG+GGG | 0.653222 | 3.2:-74148962 | MS.gene79095:CDS |
| GCTTCTCACAATGAGAATGG+AGG | 0.663834 | 3.2:-74157767 | MS.gene79095:CDS |
| GAAACAAGTTGAGAAAGGCA+TGG | 0.668398 | 3.2:-74151953 | MS.gene79095:CDS |
| AACGCCGCAAGTCAACTGGA+TGG | 0.668525 | 3.2:-74154559 | MS.gene79095:intron |
| TGTGGGAAAGAACTTTCTGG+CGG | 0.668683 | 3.2:+74156098 | None:intergenic |
| GATCCTTCATTCAAACCACA+AGG | 0.673960 | 3.2:-74155203 | MS.gene79095:CDS |
| AAACTATGGATGAAGAGACA+AGG | 0.676921 | 3.2:-74149191 | MS.gene79095:CDS |
| TGAATCGGGTAACAACTATG+TGG | 0.678863 | 3.2:-74149419 | MS.gene79095:intron |
| AGGAAAATACGGTCTCTCGT+GGG | 0.680794 | 3.2:-74148909 | MS.gene79095:CDS |
| ACAGAACCAAGTATATCCAA+CGG | 0.692277 | 3.2:+74158427 | None:intergenic |
| CTTCCAAGCAGATGTCCAAG+CGG | 0.707280 | 3.2:-74155383 | MS.gene79095:CDS |
| ATTACTGAAGAAGAAAACGG+AGG | 0.707582 | 3.2:-74149222 | MS.gene79095:CDS |
| CCTTCATTCAAACCACAAGG+CGG | 0.708725 | 3.2:-74155200 | MS.gene79095:CDS |
| GCTGCAATTAGAGGGCAGGG+TGG | 0.716544 | 3.2:-74149129 | MS.gene79095:CDS |
| GTACCGCCCAAATATCAGCA+GGG | 0.734973 | 3.2:+74158381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 74148825 | 74158552 | 74148825 | ID=MS.gene79095 |
| chr3.2 | mRNA | 74148825 | 74158552 | 74148825 | ID=MS.gene79095.t1;Parent=MS.gene79095 |
| chr3.2 | exon | 74158385 | 74158552 | 74158385 | ID=MS.gene79095.t1.exon1;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74158385 | 74158552 | 74158385 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74157716 | 74157795 | 74157716 | ID=MS.gene79095.t1.exon2;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74157716 | 74157795 | 74157716 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74157008 | 74157166 | 74157008 | ID=MS.gene79095.t1.exon3;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74157008 | 74157166 | 74157008 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74156036 | 74156249 | 74156036 | ID=MS.gene79095.t1.exon4;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74156036 | 74156249 | 74156036 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74155332 | 74155418 | 74155332 | ID=MS.gene79095.t1.exon5;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74155332 | 74155418 | 74155332 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74155095 | 74155234 | 74155095 | ID=MS.gene79095.t1.exon6;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74155095 | 74155234 | 74155095 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74154560 | 74154640 | 74154560 | ID=MS.gene79095.t1.exon7;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74154560 | 74154640 | 74154560 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74154369 | 74154433 | 74154369 | ID=MS.gene79095.t1.exon8;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74154369 | 74154433 | 74154369 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74151828 | 74152000 | 74151828 | ID=MS.gene79095.t1.exon9;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74151828 | 74152000 | 74151828 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74150711 | 74150841 | 74150711 | ID=MS.gene79095.t1.exon10;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74150711 | 74150841 | 74150711 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74150521 | 74150608 | 74150521 | ID=MS.gene79095.t1.exon11;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74150521 | 74150608 | 74150521 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74149650 | 74149863 | 74149650 | ID=MS.gene79095.t1.exon12;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74149650 | 74149863 | 74149650 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74149420 | 74149523 | 74149420 | ID=MS.gene79095.t1.exon13;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74149420 | 74149523 | 74149420 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| chr3.2 | exon | 74148825 | 74149283 | 74148825 | ID=MS.gene79095.t1.exon14;Parent=MS.gene79095.t1 |
| chr3.2 | CDS | 74148825 | 74149283 | 74148825 | ID=cds.MS.gene79095.t1;Parent=MS.gene79095.t1 |
| Gene Sequence |
| Protein sequence |
