Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80231.t1 | XP_024631970.1 | 47.1 | 70 | 33 | 1 | 79 | 144 | 1505 | 1574 | 1.50E-08 | 70.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80231.t1 | A0A072U9R8 | 32.4 | 136 | 85 | 3 | 14 | 144 | 1 | 134 | 1.8e-08 | 69.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene80231 | 0.808855 | 2.52E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene80231 | 0.80593 | 1.05E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene80231 | 0.814803 | 1.28E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene80231 | 0.82914 | 6.08E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene80231 | 0.827303 | 1.69E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene80231 | 0.860055 | 2.70E-63 | -1.69E-46 |
| MS.gene050020 | MS.gene80231 | 0.820375 | 7.09E-53 | -1.69E-46 |
| MS.gene05016 | MS.gene80231 | 0.820042 | 8.46E-53 | -1.69E-46 |
| MS.gene050273 | MS.gene80231 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene80231 | 0.816583 | 5.13E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene80231 | 0.812641 | 3.83E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene80231 | 0.805433 | 1.34E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene80231 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene80231 | 0.870401 | 1.50E-66 | -1.69E-46 |
| MS.gene051720 | MS.gene80231 | 0.858298 | 9.07E-63 | -1.69E-46 |
| MS.gene051744 | MS.gene80231 | 0.80346 | 3.45E-49 | -1.69E-46 |
| MS.gene051957 | MS.gene80231 | 0.80942 | 1.91E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene80231 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene80231 | 0.805336 | 1.40E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene80231 | 0.833484 | 5.19E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene80231 | 0.808452 | 3.08E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene80231 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene80231 | 0.807494 | 4.92E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene80231 | 0.84297 | 1.87E-58 | -1.69E-46 |
| MS.gene053597 | MS.gene80231 | 0.801517 | 8.68E-49 | -1.69E-46 |
| MS.gene053599 | MS.gene80231 | 0.827875 | 1.23E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene80231 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene80231 | 0.800187 | 1.62E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene80231 | 0.832299 | 1.02E-55 | -1.69E-46 |
| MS.gene055465 | MS.gene80231 | 0.805335 | 1.40E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene80231 | 0.819101 | 1.39E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene80231 | 0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene80231 | 0.804249 | 2.36E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene80231 | -0.826082 | 3.30E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene80231 | 0.827492 | 1.52E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene80231 | -0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene056366 | MS.gene80231 | 0.806886 | 6.62E-50 | -1.69E-46 |
| MS.gene056543 | MS.gene80231 | 0.800025 | 1.75E-48 | -1.69E-46 |
| MS.gene056545 | MS.gene80231 | 0.805121 | 1.56E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene80231 | 0.812634 | 3.84E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene80231 | 0.826252 | 3.00E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene80231 | 0.837365 | 5.43E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene80231 | 0.817906 | 2.59E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene80231 | 0.800167 | 1.64E-48 | -1.69E-46 |
| MS.gene058009 | MS.gene80231 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene80231 | 0.849953 | 2.32E-60 | -1.69E-46 |
| MS.gene059015 | MS.gene80231 | 0.804769 | 1.84E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene80231 | 0.823075 | 1.68E-53 | -1.69E-46 |
| MS.gene060194 | MS.gene80231 | 0.812524 | 4.06E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene80231 | 0.835662 | 1.47E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80231.t1 | MTR_6g053050 | 42.056 | 107 | 60 | 1 | 61 | 167 | 53 | 157 | 1.04e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACCAACAAATTGGTATT+TGG | 0.237905 | 3.4:-92967841 | MS.gene80231:CDS |
| GTTAGATAATCTACAACTTC+TGG | 0.276530 | 3.4:-92967734 | MS.gene80231:CDS |
| CAATACAACTGAAGCTGGTT+GGG | 0.337736 | 3.4:+92966903 | None:intergenic |
| ACCAGAGACTACCAACAAAT+TGG | 0.356949 | 3.4:-92967848 | MS.gene80231:CDS |
| CTCTGGTGGCGAGAGTGGAT+GGG | 0.381885 | 3.4:+92966831 | None:intergenic |
| TTTGGAAGCTTTAAGCTTTG+TGG | 0.391349 | 3.4:+92967675 | None:intergenic |
| AAGGATGCAAAATAATGATA+TGG | 0.391593 | 3.4:-92967626 | MS.gene80231:CDS |
| CCTCTGGTGGCGAGAGTGGA+TGG | 0.397100 | 3.4:+92966830 | None:intergenic |
| ACCAATTTGTTGGTAGTCTC+TGG | 0.409297 | 3.4:+92967847 | None:intergenic |
| GGGTCCGGAAATGAAAATTC+TGG | 0.417281 | 3.4:+92966949 | None:intergenic |
| AGCTCCAAATACCAATTTGT+TGG | 0.422757 | 3.4:+92967837 | None:intergenic |
| AGCGACTGGTGGTAAAAGTT+GGG | 0.428689 | 3.4:+92966855 | None:intergenic |
| GAGCGACTGGTGGTAAAAGT+TGG | 0.431107 | 3.4:+92966854 | None:intergenic |
| GAGAGTGGATGGGGAGCGAC+TGG | 0.447058 | 3.4:+92966841 | None:intergenic |
| CCCACCATTGCTGGCAGTTG+TGG | 0.447135 | 3.4:-92966929 | MS.gene80231:CDS |
| ATTTCCGGACCCACCATTGC+TGG | 0.459789 | 3.4:-92966938 | MS.gene80231:CDS |
| GCCACAACTGCCAGCAATGG+TGG | 0.464883 | 3.4:+92966928 | None:intergenic |
| ACTGCCAGCAATGGTGGGTC+CGG | 0.467645 | 3.4:+92966934 | None:intergenic |
| TCCACGTTTGCCACTAGATG+TGG | 0.485468 | 3.4:+92968260 | None:intergenic |
| GCAATACAACTGAAGCTGGT+TGG | 0.489541 | 3.4:+92966902 | None:intergenic |
| ACTCCCTCTGGTGGCGAGAG+TGG | 0.497770 | 3.4:+92966826 | None:intergenic |
| TGCTTTCAACACCATCGCTA+GGG | 0.497833 | 3.4:-92968130 | MS.gene80231:CDS |
| TCTGGTGGCGAGAGTGGATG+GGG | 0.501865 | 3.4:+92966832 | None:intergenic |
| GAAAGCAATACAACTGAAGC+TGG | 0.511463 | 3.4:+92966898 | None:intergenic |
| AAGGATGGCGATGATTCAAA+TGG | 0.526692 | 3.4:-92968235 | MS.gene80231:CDS |
| GTAGATTATCTAACAAAATG+AGG | 0.530358 | 3.4:+92967743 | None:intergenic |
| CGGAAATGAAAATTCTGGAT+GGG | 0.530911 | 3.4:+92966954 | None:intergenic |
| AATACAACTGAAGCTGGTTG+GGG | 0.541597 | 3.4:+92966904 | None:intergenic |
| AATGAGGTTGTTATCATCCT+CGG | 0.541865 | 3.4:+92967759 | None:intergenic |
| AATTTGTTGGTAGTCTCTGG+TGG | 0.544195 | 3.4:+92967850 | None:intergenic |
| AGTCTAGCTCTACTCTAAGA+AGG | 0.551498 | 3.4:-92968089 | MS.gene80231:intron |
| ACTCAAAGTTAATGCTGAGA+AGG | 0.551580 | 3.4:-92967645 | MS.gene80231:CDS |
| CTACGTATTTGCACTTGTCG+AGG | 0.554215 | 3.4:+92968198 | None:intergenic |
| ATGCTTTCAACACCATCGCT+AGG | 0.559338 | 3.4:-92968131 | MS.gene80231:CDS |
| CCATCCACTCTCGCCACCAG+AGG | 0.568519 | 3.4:-92966830 | MS.gene80231:CDS |
| CTAGTGGCAAACGTGGAGAA+AGG | 0.571228 | 3.4:-92968254 | MS.gene80231:CDS |
| GGGAAGAATGAAACTCCCTC+TGG | 0.575224 | 3.4:+92966814 | None:intergenic |
| TGGCAAACGTGGAGAAAGGA+TGG | 0.585795 | 3.4:-92968250 | MS.gene80231:CDS |
| CATCCACTCTCGCCACCAGA+GGG | 0.587096 | 3.4:-92966829 | MS.gene80231:CDS |
| CCACAACTGCCAGCAATGGT+GGG | 0.591180 | 3.4:+92966929 | None:intergenic |
| GGAGCCACAACTGCCAGCAA+TGG | 0.593774 | 3.4:+92966925 | None:intergenic |
| CCGGAAATGAAAATTCTGGA+TGG | 0.594150 | 3.4:+92966953 | None:intergenic |
| AATTGAGGTCATAGAAACTT+CGG | 0.603416 | 3.4:-92968160 | MS.gene80231:CDS |
| GGAAATGAAAATTCTGGATG+GGG | 0.605874 | 3.4:+92966955 | None:intergenic |
| TCCACATCTAGTGGCAAACG+TGG | 0.606999 | 3.4:-92968261 | MS.gene80231:CDS |
| GACATGCTCTCTGCTCCATG+TGG | 0.613147 | 3.4:+92967783 | None:intergenic |
| TCGAAATTGATGTTCCCACA+TGG | 0.616326 | 3.4:-92967798 | MS.gene80231:CDS |
| ATGATACAATCCACATCTAG+TGG | 0.617565 | 3.4:-92968270 | MS.gene80231:CDS |
| GTTGGTAGTCTCTGGTGGAG+TGG | 0.617828 | 3.4:+92967855 | None:intergenic |
| AGATGGTGAAGAGCAAATTG+AGG | 0.627211 | 3.4:-92968175 | MS.gene80231:CDS |
| CAAGTGCAAATACGTAGAGA+TGG | 0.628599 | 3.4:-92968192 | MS.gene80231:CDS |
| AAGAATGAAACTCCCTCTGG+TGG | 0.630344 | 3.4:+92966817 | None:intergenic |
| AGTGGATGGGGAGCGACTGG+TGG | 0.633134 | 3.4:+92966844 | None:intergenic |
| GCTTTCAACACCATCGCTAG+GGG | 0.637000 | 3.4:-92968129 | MS.gene80231:CDS |
| ACATGCTCTCTGCTCCATGT+GGG | 0.639411 | 3.4:+92967784 | None:intergenic |
| ACTGGTGGTAAAAGTTGGGG+TGG | 0.644058 | 3.4:+92966859 | None:intergenic |
| GCGACTGGTGGTAAAAGTTG+GGG | 0.646093 | 3.4:+92966856 | None:intergenic |
| AGATAATCTACAACTTCTGG+AGG | 0.652378 | 3.4:-92967731 | MS.gene80231:CDS |
| ACTAGCAAAACCCCTAGCGA+TGG | 0.658497 | 3.4:+92968119 | None:intergenic |
| TCTGGAGGAAGTAAGAGATG+CGG | 0.696980 | 3.4:-92967716 | MS.gene80231:CDS |
| GAGCAGAGAGCATGTCTCCG+AGG | 0.705979 | 3.4:-92967776 | MS.gene80231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTATAATTGTTTTTAACA+TGG | - | chr3.4:92967718-92967737 | MS.gene80231:CDS | 15.0% |
| !! | ACAAAAATTCAAAGAAAAAG+AGG | + | chr3.4:92967654-92967673 | None:intergenic | 20.0% |
| !! | ATTCTCTCCATATATAAAAA+AGG | - | chr3.4:92967862-92967881 | MS.gene80231:CDS | 20.0% |
| !!! | ATAATGATATGGTTTTGAAA+AGG | - | chr3.4:92967465-92967484 | MS.gene80231:intron | 20.0% |
| !!! | ATACATATCACTTTGAAATA+TGG | + | chr3.4:92967747-92967766 | None:intergenic | 20.0% |
| !!! | CTCATATCCTTTTTTATATA+TGG | + | chr3.4:92967872-92967891 | None:intergenic | 20.0% |
| !!! | GTAAAACACATTTTGTAATA+AGG | - | chr3.4:92967603-92967622 | MS.gene80231:intron | 20.0% |
| !!! | TAACTTTGAGTTGTATTTTT+TGG | + | chr3.4:92967426-92967445 | None:intergenic | 20.0% |
| !!! | TACATATCACTTTGAAATAT+GGG | + | chr3.4:92967746-92967765 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTTATTCGTTTAG+AGG | + | chr3.4:92967914-92967933 | None:intergenic | 20.0% |
| ! | AAAACAATTATACTTGCAAG+AGG | + | chr3.4:92967713-92967732 | None:intergenic | 25.0% |
| ! | AAGGATGCAAAATAATGATA+TGG | - | chr3.4:92967454-92967473 | MS.gene80231:intron | 25.0% |
| ! | GTAGATTATCTAACAAAATG+AGG | + | chr3.4:92967340-92967359 | None:intergenic | 25.0% |
| ! | TCTCAATCAAATATCAAGAA+GGG | - | chr3.4:92967080-92967099 | MS.gene80231:intron | 25.0% |
| ! | TTCTCAATCAAATATCAAGA+AGG | - | chr3.4:92967079-92967098 | MS.gene80231:intron | 25.0% |
| ! | TTCTTGATATTTGATTGAGA+AGG | + | chr3.4:92967080-92967099 | None:intergenic | 25.0% |
| !!! | ACATATCACTTTGAAATATG+GGG | + | chr3.4:92967745-92967764 | None:intergenic | 25.0% |
| !!! | AGACTTTATATCTTAGCTTT+TGG | + | chr3.4:92967629-92967648 | None:intergenic | 25.0% |
| !!! | TATAACTTGCTAGTTTATGA+TGG | + | chr3.4:92967500-92967519 | None:intergenic | 25.0% |
| AAGTTATACTCGAAAAGGAA+AGG | - | chr3.4:92967512-92967531 | MS.gene80231:intron | 30.0% | |
| AATGTGATCCCTTTAAATGA+AGG | - | chr3.4:92967820-92967839 | MS.gene80231:CDS | 30.0% | |
| AATTGAGGTCATAGAAACTT+CGG | - | chr3.4:92966920-92966939 | MS.gene80231:CDS | 30.0% | |
| ACTACCAACAAATTGGTATT+TGG | - | chr3.4:92967239-92967258 | MS.gene80231:intron | 30.0% | |
| ATGTGATCCCTTTAAATGAA+GGG | - | chr3.4:92967821-92967840 | MS.gene80231:CDS | 30.0% | |
| GTTAGATAATCTACAACTTC+TGG | - | chr3.4:92967346-92967365 | MS.gene80231:intron | 30.0% | |
| TAGATGCTGGATAATTTAAG+CGG | - | chr3.4:92967559-92967578 | MS.gene80231:intron | 30.0% | |
| TTCACACATTTAAGAAGGTT+GGG | - | chr3.4:92967962-92967981 | MS.gene80231:intron | 30.0% | |
| ! | ATCAGGTACATACATCTTTT+CGG | - | chr3.4:92967029-92967048 | MS.gene80231:intron | 30.0% |
| !! | CATATCACTTTGAAATATGG+GGG | + | chr3.4:92967744-92967763 | None:intergenic | 30.0% |
| !! | GAATGAAATTTGCTTTTCCT+CGG | + | chr3.4:92968090-92968109 | None:intergenic | 30.0% |
| AAAGGGATCACATTTCTTGT+AGG | + | chr3.4:92967814-92967833 | None:intergenic | 35.0% | |
| AAGCAAATTTCATTCTTCCC+AGG | - | chr3.4:92968095-92968114 | MS.gene80231:CDS | 35.0% | |
| AAGGGATCACATTTCTTGTA+GGG | + | chr3.4:92967813-92967832 | None:intergenic | 35.0% | |
| AATGAGGTTGTTATCATCCT+CGG | + | chr3.4:92967324-92967343 | None:intergenic | 35.0% | |
| AATTATACTTGCAAGAGGTG+AGG | + | chr3.4:92967708-92967727 | None:intergenic | 35.0% | |
| ACTCAAAGTTAATGCTGAGA+AGG | - | chr3.4:92967435-92967454 | MS.gene80231:intron | 35.0% | |
| AGATAATCTACAACTTCTGG+AGG | - | chr3.4:92967349-92967368 | MS.gene80231:intron | 35.0% | |
| AGCTCCAAATACCAATTTGT+TGG | + | chr3.4:92967246-92967265 | None:intergenic | 35.0% | |
| ATGATACAATCCACATCTAG+TGG | - | chr3.4:92966810-92966829 | MS.gene80231:CDS | 35.0% | |
| CGGAAATGAAAATTCTGGAT+GGG | + | chr3.4:92968129-92968148 | None:intergenic | 35.0% | |
| CTAGCAAGTTATACTCGAAA+AGG | - | chr3.4:92967507-92967526 | MS.gene80231:intron | 35.0% | |
| GCTTAAATTATCCAGCATCT+AGG | + | chr3.4:92967560-92967579 | None:intergenic | 35.0% | |
| GGAAATGAAAATTCTGGATG+GGG | + | chr3.4:92968128-92968147 | None:intergenic | 35.0% | |
| GTTCACACATTTAAGAAGGT+TGG | - | chr3.4:92967961-92967980 | MS.gene80231:intron | 35.0% | |
| TGCTGTTCACACATTTAAGA+AGG | - | chr3.4:92967957-92967976 | MS.gene80231:intron | 35.0% | |
| TGTGATCCCTTTAAATGAAG+GGG | - | chr3.4:92967822-92967841 | MS.gene80231:CDS | 35.0% | |
| TTTGTGCCCCTTCATTTAAA+GGG | + | chr3.4:92967831-92967850 | None:intergenic | 35.0% | |
| ! | AGGAGTTACATCAAGTTTTC+TGG | - | chr3.4:92967197-92967216 | MS.gene80231:intron | 35.0% |
| ! | CCATCCAGAATTTTCATTTC+CGG | - | chr3.4:92968127-92968146 | MS.gene80231:CDS | 35.0% |
| ! | CGGATCCCTTTTAATATGTT+GGG | + | chr3.4:92967788-92967807 | None:intergenic | 35.0% |
| ! | GATCCCTTTTAATATGTTGG+GGG | + | chr3.4:92967786-92967805 | None:intergenic | 35.0% |
| ! | GGATCCCTTTTAATATGTTG+GGG | + | chr3.4:92967787-92967806 | None:intergenic | 35.0% |
| ! | TCGGATCCCTTTTAATATGT+TGG | + | chr3.4:92967789-92967808 | None:intergenic | 35.0% |
| !! | TTTGGAAGCTTTAAGCTTTG+TGG | + | chr3.4:92967408-92967427 | None:intergenic | 35.0% |
| AAGGATGGCGATGATTCAAA+TGG | - | chr3.4:92966845-92966864 | MS.gene80231:CDS | 40.0% | |
| AATACAACTGAAGCTGGTTG+GGG | + | chr3.4:92968179-92968198 | None:intergenic | 40.0% | |
| ACCAGAGACTACCAACAAAT+TGG | - | chr3.4:92967232-92967251 | MS.gene80231:intron | 40.0% | |
| ACCATAGGATTGTCCTTATG+AGG | + | chr3.4:92967112-92967131 | None:intergenic | 40.0% | |
| AGATGGTGAAGAGCAAATTG+AGG | - | chr3.4:92966905-92966924 | MS.gene80231:CDS | 40.0% | |
| AGCTCCCCCAACATATTAAA+AGG | - | chr3.4:92967779-92967798 | MS.gene80231:CDS | 40.0% | |
| ATCACATTTCTTGTAGGGCT+CGG | + | chr3.4:92967808-92967827 | None:intergenic | 40.0% | |
| CAAGTGCAAATACGTAGAGA+TGG | - | chr3.4:92966888-92966907 | MS.gene80231:CDS | 40.0% | |
| CAATACAACTGAAGCTGGTT+GGG | + | chr3.4:92968180-92968199 | None:intergenic | 40.0% | |
| CCATAGGATTGTCCTTATGA+GGG | + | chr3.4:92967111-92967130 | None:intergenic | 40.0% | |
| CCGGAAATGAAAATTCTGGA+TGG | + | chr3.4:92968130-92968149 | None:intergenic | 40.0% | |
| GAAAGCAATACAACTGAAGC+TGG | + | chr3.4:92968185-92968204 | None:intergenic | 40.0% | |
| GCTCCCCCAACATATTAAAA+GGG | - | chr3.4:92967780-92967799 | MS.gene80231:CDS | 40.0% | |
| GTTTGTGCCCCTTCATTTAA+AGG | + | chr3.4:92967832-92967851 | None:intergenic | 40.0% | |
| TATGTACCTGATTAACCTGC+AGG | + | chr3.4:92967021-92967040 | None:intergenic | 40.0% | |
| TCATAAGGACAATCCTATGG+TGG | - | chr3.4:92967111-92967130 | MS.gene80231:intron | 40.0% | |
| TCGAAATTGATGTTCCCACA+TGG | - | chr3.4:92967282-92967301 | MS.gene80231:intron | 40.0% | |
| ! | AAAATACGTTTTTGCCCCCT+CGG | - | chr3.4:92967995-92968014 | MS.gene80231:intron | 40.0% |
| !! | AATTTGTTGGTAGTCTCTGG+TGG | + | chr3.4:92967233-92967252 | None:intergenic | 40.0% |
| !! | ACCAATTTGTTGGTAGTCTC+TGG | + | chr3.4:92967236-92967255 | None:intergenic | 40.0% |
| !! | AGTCTAGCTCTACTCTAAGA+AGG | - | chr3.4:92966991-92967010 | MS.gene80231:intron | 40.0% |
| AAGAATGAAACTCCCTCTGG+TGG | + | chr3.4:92968266-92968285 | None:intergenic | 45.0% | |
| AGCGACTGGTGGTAAAAGTT+GGG | + | chr3.4:92968228-92968247 | None:intergenic | 45.0% | |
| ATCCTAACATCCACCACCAT+AGG | + | chr3.4:92967127-92967146 | None:intergenic | 45.0% | |
| ATGCTTTCAACACCATCGCT+AGG | - | chr3.4:92966949-92966968 | MS.gene80231:CDS | 45.0% | |
| CCCTCATAAGGACAATCCTA+TGG | - | chr3.4:92967108-92967127 | MS.gene80231:intron | 45.0% | |
| CTACGTATTTGCACTTGTCG+AGG | + | chr3.4:92966885-92966904 | None:intergenic | 45.0% | |
| CTATAAGCATGCGGCAATCA+GGG | + | chr3.4:92967173-92967192 | None:intergenic | 45.0% | |
| CTGCCGAGGATTTCAAAAAC+CGG | - | chr3.4:92968025-92968044 | MS.gene80231:intron | 45.0% | |
| GCAATACAACTGAAGCTGGT+TGG | + | chr3.4:92968181-92968200 | None:intergenic | 45.0% | |
| GCTCCTGATATGAGCTATAC+GGG | + | chr3.4:92967538-92967557 | None:intergenic | 45.0% | |
| GGCTCCTGATATGAGCTATA+CGG | + | chr3.4:92967539-92967558 | None:intergenic | 45.0% | |
| GGGTCCGGAAATGAAAATTC+TGG | + | chr3.4:92968134-92968153 | None:intergenic | 45.0% | |
| TAAGGACAATCCTATGGTGG+TGG | - | chr3.4:92967114-92967133 | MS.gene80231:intron | 45.0% | |
| TCTGGAGGAAGTAAGAGATG+CGG | - | chr3.4:92967364-92967383 | MS.gene80231:intron | 45.0% | |
| TGCTTTCAACACCATCGCTA+GGG | - | chr3.4:92966950-92966969 | MS.gene80231:CDS | 45.0% | |
| TTAACTGCCGAGGAAAACCT+CGG | - | chr3.4:92968054-92968073 | MS.gene80231:intron | 45.0% | |
| ! | TTAACTGCCGAGGTTTTCCT+CGG | + | chr3.4:92968064-92968083 | None:intergenic | 45.0% |
| ! | TTGGGGGAGCTTTTCTTGTT+TGG | + | chr3.4:92967770-92967789 | None:intergenic | 45.0% |
| !! | ATCCTATGGTGGTGGATGTT+AGG | - | chr3.4:92967122-92967141 | MS.gene80231:intron | 45.0% |
| !!! | CAGCCGGTTTTTGAAATCCT+CGG | + | chr3.4:92968031-92968050 | None:intergenic | 45.0% |
| ACATGCTCTCTGCTCCATGT+GGG | + | chr3.4:92967299-92967318 | None:intergenic | 50.0% | |
| ACTAGCAAAACCCCTAGCGA+TGG | + | chr3.4:92966964-92966983 | None:intergenic | 50.0% | |
| ACTGGTGGTAAAAGTTGGGG+TGG | + | chr3.4:92968224-92968243 | None:intergenic | 50.0% | |
| AGAAGGGATCGTCCCTCATA+AGG | - | chr3.4:92967096-92967115 | MS.gene80231:intron | 50.0% | |
| AGGCCCGTATAGCTCATATC+AGG | - | chr3.4:92967532-92967551 | MS.gene80231:intron | 50.0% | |
| CATATCAGGAGCCTAGATGC+TGG | - | chr3.4:92967546-92967565 | MS.gene80231:intron | 50.0% | |
| CCTATAAGCATGCGGCAATC+AGG | + | chr3.4:92967174-92967193 | None:intergenic | 50.0% | |
| CCTGATTGCCGCATGCTTAT+AGG | - | chr3.4:92967171-92967190 | MS.gene80231:intron | 50.0% | |
| CTAGTGGCAAACGTGGAGAA+AGG | - | chr3.4:92966826-92966845 | MS.gene80231:CDS | 50.0% | |
| GAGCGACTGGTGGTAAAAGT+TGG | + | chr3.4:92968229-92968248 | None:intergenic | 50.0% | |
| GATTGCCGCATGCTTATAGG+CGG | - | chr3.4:92967174-92967193 | MS.gene80231:intron | 50.0% | |
| GCGACTGGTGGTAAAAGTTG+GGG | + | chr3.4:92968227-92968246 | None:intergenic | 50.0% | |
| GCTTTCAACACCATCGCTAG+GGG | - | chr3.4:92966951-92966970 | MS.gene80231:CDS | 50.0% | |
| GGGAAGAATGAAACTCCCTC+TGG | + | chr3.4:92968269-92968288 | None:intergenic | 50.0% | |
| TCCACATCTAGTGGCAAACG+TGG | - | chr3.4:92966819-92966838 | MS.gene80231:CDS | 50.0% | |
| TCCACGTTTGCCACTAGATG+TGG | + | chr3.4:92966823-92966842 | None:intergenic | 50.0% | |
| TGGCAAACGTGGAGAAAGGA+TGG | - | chr3.4:92966830-92966849 | MS.gene80231:CDS | 50.0% | |
| ! | ATCGCTAGGGGTTTTGCTAG+TGG | - | chr3.4:92966963-92966982 | MS.gene80231:CDS | 50.0% |
| ACCTCGGCAGTTAACTACCG+AGG | - | chr3.4:92968070-92968089 | MS.gene80231:intron | 55.0% | |
| ATTTCCGGACCCACCATTGC+TGG | - | chr3.4:92968142-92968161 | MS.gene80231:CDS | 55.0% | |
| CCACAACTGCCAGCAATGGT+GGG | + | chr3.4:92968154-92968173 | None:intergenic | 55.0% | |
| CTCCTCCGCCTATAAGCATG+CGG | + | chr3.4:92967182-92967201 | None:intergenic | 55.0% | |
| GACATGCTCTCTGCTCCATG+TGG | + | chr3.4:92967300-92967319 | None:intergenic | 55.0% | |
| GGTACGCCTGCAGGTTAATC+AGG | - | chr3.4:92967012-92967031 | MS.gene80231:intron | 55.0% | |
| TCCTCGGTAGTTAACTGCCG+AGG | + | chr3.4:92968074-92968093 | None:intergenic | 55.0% | |
| ! | CTCTAAGAAGGTACGCCTGC+AGG | - | chr3.4:92967003-92967022 | MS.gene80231:intron | 55.0% |
| !! | GTTGGTAGTCTCTGGTGGAG+TGG | + | chr3.4:92967228-92967247 | None:intergenic | 55.0% |
| CATCCACTCTCGCCACCAGA+GGG | - | chr3.4:92968251-92968270 | MS.gene80231:CDS | 60.0% | |
| CCCACCATTGCTGGCAGTTG+TGG | - | chr3.4:92968151-92968170 | MS.gene80231:CDS | 60.0% | |
| CCTCGGCAGTTAACTGCAGC+CGG | + | chr3.4:92968047-92968066 | None:intergenic | 60.0% | |
| CCTCGGCAGTTAACTGCCGA+GGG | + | chr3.4:92968031-92968012 | None:intergenic | 60.0% | |
| CTCGGCAGTTAACTGCCGAG+GGG | + | chr3.4:92968032-92968013 | None:intergenic | 60.0% | |
| GCCACAACTGCCAGCAATGG+TGG | + | chr3.4:92968155-92968174 | None:intergenic | 60.0% | |
| GGAGCCACAACTGCCAGCAA+TGG | + | chr3.4:92968158-92968177 | None:intergenic | 60.0% | |
| TCCTCGGCAGTTAACTGCCG+AGG | + | chr3.4:92968015-92968034 | None:intergenic | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | + | chr3.4:92968033-92968014 | None:intergenic | 60.0% | |
| TGCCGCATGCTTATAGGCGG+AGG | - | chr3.4:92967177-92967196 | MS.gene80231:intron | 60.0% | |
| ! | CTCTGGTGGCGAGAGTGGAT+GGG | + | chr3.4:92968252-92968271 | None:intergenic | 60.0% |
| ! | GAGCAGAGAGCATGTCTCCG+AGG | - | chr3.4:92967304-92967323 | MS.gene80231:intron | 60.0% |
| ! | TCTGGTGGCGAGAGTGGATG+GGG | + | chr3.4:92968251-92968270 | None:intergenic | 60.0% |
| !! | ACTGCCAGCAATGGTGGGTC+CGG | + | chr3.4:92968149-92968168 | None:intergenic | 60.0% |
| AGTGGATGGGGAGCGACTGG+TGG | + | chr3.4:92968239-92968258 | None:intergenic | 65.0% | |
| CCATCCACTCTCGCCACCAG+AGG | - | chr3.4:92968250-92968269 | MS.gene80231:CDS | 65.0% | |
| CCCTCGGCAGTTAACTGCCG+AGG | - | chr3.4:92968011-92968030 | MS.gene80231:intron | 65.0% | |
| CCGGCTGCAGTTAACTGCCG+AGG | - | chr3.4:92968044-92968063 | MS.gene80231:intron | 65.0% | |
| GAGAGTGGATGGGGAGCGAC+TGG | + | chr3.4:92968242-92968261 | None:intergenic | 65.0% | |
| ! | ACTCCCTCTGGTGGCGAGAG+TGG | + | chr3.4:92968257-92968276 | None:intergenic | 65.0% |
| ! | CCTCTGGTGGCGAGAGTGGA+TGG | + | chr3.4:92968253-92968272 | None:intergenic | 65.0% |
| !! | CTGGATGGGGTGCTGCTCCT+GGG | + | chr3.4:92968115-92968134 | None:intergenic | 65.0% |
| !! | TCTGGATGGGGTGCTGCTCC+TGG | + | chr3.4:92968116-92968135 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92966810 | 92968292 | 92966810 | ID=MS.gene80231 |
| chr3.4 | mRNA | 92966810 | 92968292 | 92966810 | ID=MS.gene80231.t1;Parent=MS.gene80231 |
| chr3.4 | exon | 92968090 | 92968292 | 92968090 | ID=MS.gene80231.t1.exon1;Parent=MS.gene80231.t1 |
| chr3.4 | CDS | 92968090 | 92968292 | 92968090 | ID=cds.MS.gene80231.t1;Parent=MS.gene80231.t1 |
| chr3.4 | exon | 92967608 | 92967909 | 92967608 | ID=MS.gene80231.t1.exon2;Parent=MS.gene80231.t1 |
| chr3.4 | CDS | 92967608 | 92967909 | 92967608 | ID=cds.MS.gene80231.t1;Parent=MS.gene80231.t1 |
| chr3.4 | exon | 92966810 | 92966985 | 92966810 | ID=MS.gene80231.t1.exon3;Parent=MS.gene80231.t1 |
| chr3.4 | CDS | 92966810 | 92966985 | 92966810 | ID=cds.MS.gene80231.t1;Parent=MS.gene80231.t1 |
| Gene Sequence |
| Protein sequence |
