Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050287.t1 | XP_013450120.1 | 96.3 | 217 | 7 | 1 | 1 | 216 | 1 | 217 | 5.00E-102 | 380.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050287.t1 | A0A072U4S8 | 96.3 | 217 | 7 | 1 | 1 | 216 | 1 | 217 | 3.6e-102 | 380.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049321 | MS.gene050287 | 0.8076 | 4.67E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene050287 | -0.804429 | 2.17E-49 | -1.69E-46 |
| MS.gene050284 | MS.gene050287 | 0.893421 | 6.39E-75 | -1.69E-46 |
| MS.gene050287 | MS.gene051752 | 0.910016 | 3.00E-82 | -1.69E-46 |
| MS.gene050287 | MS.gene052190 | -0.812964 | 3.25E-51 | -1.69E-46 |
| MS.gene050287 | MS.gene054291 | 0.822648 | 2.12E-53 | -1.69E-46 |
| MS.gene050287 | MS.gene055818 | -0.804581 | 2.02E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene057026 | -0.829695 | 4.46E-55 | -1.69E-46 |
| MS.gene050287 | MS.gene08853 | -0.801891 | 7.27E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene20253 | -0.805296 | 1.43E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene24642 | -0.810764 | 9.80E-51 | -1.69E-46 |
| MS.gene050287 | MS.gene24651 | -0.818042 | 2.41E-52 | -1.69E-46 |
| MS.gene050287 | MS.gene24710 | 0.996801 | 2.01E-232 | -1.69E-46 |
| MS.gene050287 | MS.gene31283 | -0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene33131 | -0.801774 | 7.68E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene41198 | 0.827876 | 1.23E-54 | -1.69E-46 |
| MS.gene050287 | MS.gene44510 | -0.802804 | 4.71E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene50031 | -0.836858 | 7.32E-57 | -1.69E-46 |
| MS.gene050287 | MS.gene57178 | -0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene050287 | MS.gene58547 | -0.802266 | 6.09E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene58802 | -0.808275 | 3.36E-50 | -1.69E-46 |
| MS.gene050287 | MS.gene61101 | 0.81707 | 3.99E-52 | -1.69E-46 |
| MS.gene050287 | MS.gene73564 | -0.820205 | 7.75E-53 | -1.69E-46 |
| MS.gene050287 | MS.gene76750 | -0.811199 | 7.89E-51 | -1.69E-46 |
| MS.gene050287 | MS.gene77015 | -0.812138 | 4.93E-51 | -1.69E-46 |
| MS.gene050287 | MS.gene81107 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene82259 | -0.81957 | 1.08E-52 | -1.69E-46 |
| MS.gene050287 | MS.gene85287 | -0.805323 | 1.41E-49 | -1.69E-46 |
| MS.gene050287 | MS.gene88171 | -0.811207 | 7.86E-51 | -1.69E-46 |
| MS.gene050287 | MS.gene93311 | -0.807416 | 5.11E-50 | -1.69E-46 |
| MS.gene050287 | MS.gene98611 | -0.805707 | 1.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050287.t1 | MTR_7g105130 | 97.696 | 217 | 4 | 1 | 1 | 216 | 1 | 217 | 2.68e-150 | 416 |
| MS.gene050287.t1 | MTR_2g086660 | 47.619 | 105 | 53 | 2 | 114 | 216 | 151 | 255 | 3.34e-20 | 85.9 |
| MS.gene050287.t1 | MTR_2g086660 | 47.059 | 102 | 52 | 2 | 114 | 213 | 151 | 252 | 2.89e-18 | 81.3 |
| MS.gene050287.t1 | MTR_4g132020 | 44.643 | 112 | 48 | 5 | 109 | 214 | 71 | 174 | 9.94e-18 | 77.8 |
| MS.gene050287.t1 | MTR_2g023070 | 34.529 | 223 | 109 | 10 | 13 | 214 | 10 | 216 | 4.45e-15 | 71.6 |
| MS.gene050287.t1 | MTR_2g023390 | 58.000 | 50 | 21 | 0 | 167 | 216 | 107 | 156 | 6.38e-14 | 67.0 |
| MS.gene050287.t1 | MTR_3g052330 | 33.803 | 142 | 66 | 4 | 102 | 216 | 58 | 198 | 8.31e-14 | 67.8 |
| MS.gene050287.t1 | MTR_7g101250 | 61.224 | 49 | 15 | 1 | 168 | 216 | 116 | 160 | 1.55e-11 | 60.8 |
| MS.gene050287.t1 | MTR_2g094410 | 61.224 | 49 | 15 | 1 | 168 | 216 | 112 | 156 | 1.94e-11 | 60.5 |
| MS.gene050287.t1 | MTR_2g018175 | 54.000 | 50 | 21 | 1 | 167 | 216 | 79 | 126 | 2.77e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050287.t1 | AT3G15040 | 49.138 | 116 | 54 | 3 | 105 | 216 | 129 | 243 | 2.11e-20 | 86.3 |
| MS.gene050287.t1 | AT4G21970 | 43.182 | 88 | 49 | 1 | 130 | 216 | 58 | 145 | 1.60e-17 | 76.6 |
| MS.gene050287.t1 | AT3G45210 | 56.667 | 60 | 22 | 1 | 157 | 216 | 93 | 148 | 1.17e-15 | 71.6 |
| MS.gene050287.t1 | AT4G04630 | 46.154 | 104 | 51 | 2 | 118 | 216 | 65 | 168 | 1.27e-14 | 69.3 |
| MS.gene050287.t1 | AT1G29640 | 45.455 | 88 | 37 | 3 | 129 | 216 | 63 | 139 | 3.40e-14 | 67.4 |
| MS.gene050287.t1 | AT1G61930 | 32.710 | 214 | 107 | 8 | 15 | 215 | 13 | 202 | 2.51e-11 | 61.2 |
| MS.gene050287.t1 | AT4G26950 | 37.500 | 144 | 73 | 6 | 74 | 216 | 17 | 144 | 4.86e-11 | 58.9 |
| MS.gene050287.t1 | AT4G26950 | 37.500 | 144 | 73 | 6 | 74 | 216 | 17 | 144 | 4.86e-11 | 58.9 |
Find 86 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGAGGCGGTCGGAGGAGG+AGG | 0.297600 | 7.2:+7965170 | None:intergenic |
| GGCATACTTGCTGTCCTATC+AGG | 0.339956 | 7.2:-7964976 | MS.gene050287:CDS |
| CTCATCGCCGGCGGCGGAGG+TGG | 0.349135 | 7.2:+7965122 | None:intergenic |
| TAGGAAGGTGTGGGGTCCAT+TGG | 0.377476 | 7.2:+7965207 | None:intergenic |
| ATCGCCGGCGGCGGAGGTGG+TGG | 0.387749 | 7.2:+7965125 | None:intergenic |
| GCCGAGGAGGCGGTCGGAGG+AGG | 0.389773 | 7.2:+7965167 | None:intergenic |
| GGAGGCGGTCGGAGGAGGAG+GGG | 0.390821 | 7.2:+7965172 | None:intergenic |
| GGCGGCGGAGGTGGTGGAAG+GGG | 0.395749 | 7.2:+7965131 | None:intergenic |
| GGAGGGGAATCGGCGGTGAT+AGG | 0.396483 | 7.2:+7965188 | None:intergenic |
| CGATTCACCGCGGCGGTTGT+CGG | 0.399183 | 7.2:+7964951 | None:intergenic |
| AATCGACTCGGCGGCATAAT+CGG | 0.409285 | 7.2:+7964793 | None:intergenic |
| CGGAAACGAAGGAATCATTC+TGG | 0.409373 | 7.2:+7964894 | None:intergenic |
| TTCAATCAAGAAAACCGGTT+TGG | 0.414262 | 7.2:+7964575 | None:intergenic |
| GAGCTCATCGCCGGCGGCGG+AGG | 0.421924 | 7.2:+7965119 | None:intergenic |
| GGTCGGAGGAGGAGGGGAAT+CGG | 0.426093 | 7.2:+7965178 | None:intergenic |
| ACCGGTTCAATCAAGAAAAC+CGG | 0.431244 | 7.2:+7964570 | None:intergenic |
| AGCTCCTTCGGTTGAGGTGG+TGG | 0.433129 | 7.2:+7965036 | None:intergenic |
| ATCATATTCTCGGAAGGTCT+TGG | 0.448234 | 7.2:+7964868 | None:intergenic |
| CCTTCACCGGAGCAGATTGT+TGG | 0.453692 | 7.2:+7964818 | None:intergenic |
| TGTTGATGAGCTTGCGGTGT+TGG | 0.456949 | 7.2:-7964755 | MS.gene050287:CDS |
| ATCATTCTGGAAGATGAAAC+GGG | 0.459788 | 7.2:+7964907 | None:intergenic |
| CCGGCGGCGGAGGTGGTGGA+AGG | 0.463410 | 7.2:+7965129 | None:intergenic |
| CGGTGACGAGTTAGCTCCTT+CGG | 0.466851 | 7.2:+7965024 | None:intergenic |
| TCCTCCTCCGACCGCCTCCT+CGG | 0.473339 | 7.2:-7965168 | MS.gene050287:CDS |
| TTCTCGGAAGGTCTTGGTCT+CGG | 0.478965 | 7.2:+7964874 | None:intergenic |
| GGCATAATCGGAACCTTCAC+CGG | 0.480745 | 7.2:+7964805 | None:intergenic |
| GAGATTGTTGCGAGAGGCTC+TGG | 0.482407 | 7.2:-7964691 | MS.gene050287:CDS |
| AACGCTGTTCTGCGCCAAAC+CGG | 0.488010 | 7.2:-7964589 | MS.gene050287:CDS |
| CATCAACATCCCTACGCCTC+GGG | 0.490643 | 7.2:+7964770 | None:intergenic |
| CGGCGGCGGAGGTGGTGGAA+GGG | 0.493874 | 7.2:+7965130 | None:intergenic |
| AGTGAGCTCATCGCCGGCGG+CGG | 0.495744 | 7.2:+7965116 | None:intergenic |
| GGCGGTTGTCGGAGCCTGAT+AGG | 0.495981 | 7.2:+7964962 | None:intergenic |
| CATGGATTGAATCATATTCT+CGG | 0.498530 | 7.2:+7964858 | None:intergenic |
| CGGAGGAGGAGGGGAATCGG+CGG | 0.500841 | 7.2:+7965181 | None:intergenic |
| CCTTCCACCACCTCCGCCGC+CGG | 0.504410 | 7.2:-7965129 | MS.gene050287:CDS |
| AGGAGGCGGTCGGAGGAGGA+GGG | 0.507664 | 7.2:+7965171 | None:intergenic |
| CAACCGCCGCGGTGAATCGC+CGG | 0.517412 | 7.2:-7964947 | MS.gene050287:CDS |
| AAAACCGAAAAGGTAGTTCT+CGG | 0.517462 | 7.2:+7964661 | None:intergenic |
| AACTCCTTCCAAAACCGAAA+AGG | 0.517512 | 7.2:+7964651 | None:intergenic |
| GGGAATCGGCGGTGATAGGA+AGG | 0.518948 | 7.2:+7965192 | None:intergenic |
| AGTTGAAGGCGCCGAGGAGG+CGG | 0.522197 | 7.2:+7965157 | None:intergenic |
| AATCATTCTGGAAGATGAAA+CGG | 0.522636 | 7.2:+7964906 | None:intergenic |
| CAAAGGGAGAGATCTTCGTC+AGG | 0.523089 | 7.2:-7964617 | MS.gene050287:CDS |
| CCAACAATCTGCTCCGGTGA+AGG | 0.523875 | 7.2:-7964818 | MS.gene050287:CDS |
| AGCTTCAGTGAGCTCATCGC+CGG | 0.525383 | 7.2:+7965110 | None:intergenic |
| ATTCTTCCAACAATCTGCTC+CGG | 0.527245 | 7.2:-7964824 | MS.gene050287:CDS |
| GGTGGAAGGGGAGAAGTTGA+AGG | 0.527376 | 7.2:+7965143 | None:intergenic |
| CGAGTTAGCTCCTTCGGTTG+AGG | 0.528148 | 7.2:+7965030 | None:intergenic |
| CGAGTCGATTCCCGAGGCGT+AGG | 0.528775 | 7.2:-7964780 | MS.gene050287:CDS |
| GAGTCGATTCCCGAGGCGTA+GGG | 0.543346 | 7.2:-7964779 | MS.gene050287:CDS |
| CGGCGGTGATAGGAAGGTGT+GGG | 0.546670 | 7.2:+7965198 | None:intergenic |
| TCATCAACATCCCTACGCCT+CGG | 0.557335 | 7.2:+7964769 | None:intergenic |
| GGCGCCGAGGAGGCGGTCGG+AGG | 0.578979 | 7.2:+7965164 | None:intergenic |
| GTTAGCTCCTTCGGTTGAGG+TGG | 0.580450 | 7.2:+7965033 | None:intergenic |
| TGATAGGACAGCAAGTATGC+CGG | 0.581191 | 7.2:+7964978 | None:intergenic |
| CTACGCCTCGGGAATCGACT+CGG | 0.583023 | 7.2:+7964781 | None:intergenic |
| TTCAGTGAGCTCATCGCCGG+CGG | 0.583955 | 7.2:+7965113 | None:intergenic |
| GGAGTTGGAAGAACTCTCAA+AGG | 0.586119 | 7.2:-7964634 | MS.gene050287:CDS |
| GGTGAATCGCCGGTGTTCCG+TGG | 0.595121 | 7.2:-7964937 | MS.gene050287:CDS |
| TGATGATGACGACGACGGCA+AGG | 0.596482 | 7.2:-7964731 | MS.gene050287:CDS |
| TTCAGATTCGGAGCTGTCGG+AGG | 0.599094 | 7.2:+7965071 | None:intergenic |
| AGAAGTTGAAGGCGCCGAGG+AGG | 0.600990 | 7.2:+7965154 | None:intergenic |
| TTCGATCTATCTCAAGACTC+CGG | 0.602739 | 7.2:-7964997 | MS.gene050287:CDS |
| TCGGCGGTGATAGGAAGGTG+TGG | 0.607076 | 7.2:+7965197 | None:intergenic |
| GAGTTGGAAGAACTCTCAAA+GGG | 0.607793 | 7.2:-7964633 | MS.gene050287:CDS |
| GGGGATTTACCACGGAACAC+CGG | 0.607892 | 7.2:+7964928 | None:intergenic |
| GATTGAATCATATTCTCGGA+AGG | 0.610133 | 7.2:+7964862 | None:intergenic |
| GAAGGCGCCGAGGAGGCGGT+CGG | 0.614301 | 7.2:+7965161 | None:intergenic |
| GGGAGAAGTTGAAGGCGCCG+AGG | 0.615412 | 7.2:+7965151 | None:intergenic |
| ACGTCCACCACCTCAACCGA+AGG | 0.622595 | 7.2:-7965040 | MS.gene050287:CDS |
| GGTCTTGGTCTCGGAAACGA+AGG | 0.637188 | 7.2:+7964883 | None:intergenic |
| CCTCATGAGATTGTTGCGAG+AGG | 0.640232 | 7.2:-7964697 | MS.gene050287:CDS |
| CGAAGGAGCTAACTCGTCAC+CGG | 0.643951 | 7.2:-7965023 | MS.gene050287:CDS |
| CTTGAGATAGATCGAAACTC+CGG | 0.644038 | 7.2:+7965004 | None:intergenic |
| CCTCTCGCAACAATCTCATG+AGG | 0.649415 | 7.2:+7964697 | None:intergenic |
| TGCCGCCGAGTCGATTCCCG+AGG | 0.656419 | 7.2:-7964786 | MS.gene050287:CDS |
| TAGGGATGTTGATGAGCTTG+CGG | 0.658353 | 7.2:-7964761 | MS.gene050287:CDS |
| CTCGCAACAATCTCATGAGG+CGG | 0.658511 | 7.2:+7964700 | None:intergenic |
| GGCGGTGATAGGAAGGTGTG+GGG | 0.700557 | 7.2:+7965199 | None:intergenic |
| CATTCTGGAAGATGAAACGG+GGG | 0.702981 | 7.2:+7964909 | None:intergenic |
| TCATTCTGGAAGATGAAACG+GGG | 0.703104 | 7.2:+7964908 | None:intergenic |
| GGAACACCGGCGATTCACCG+CGG | 0.705322 | 7.2:+7964941 | None:intergenic |
| TCAGGCTCCGACAACCGCCG+CGG | 0.710525 | 7.2:-7964958 | MS.gene050287:CDS |
| ACACCGGCGATTCACCGCGG+CGG | 0.716052 | 7.2:+7964944 | None:intergenic |
| CGCCTCGGGAATCGACTCGG+CGG | 0.734091 | 7.2:+7964784 | None:intergenic |
| TTGGATGATGATGACGACGA+CGG | 0.773393 | 7.2:-7964736 | MS.gene050287:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATCATTCTGGAAGATGAAA+CGG | + | chr7.2:7964877-7964896 | None:intergenic | 30.0% |
| ! | CATGGATTGAATCATATTCT+CGG | + | chr7.2:7964925-7964944 | None:intergenic | 30.0% |
| !! | TGTTGGAAGAATTTTCTAGT+AGG | + | chr7.2:7964948-7964967 | None:intergenic | 30.0% |
| !!! | ACGTTGTTGATTTTCAGATT+CGG | + | chr7.2:7964724-7964743 | None:intergenic | 30.0% |
| AAAACCGAAAAGGTAGTTCT+CGG | + | chr7.2:7965122-7965141 | None:intergenic | 35.0% | |
| GATTGAATCATATTCTCGGA+AGG | + | chr7.2:7964921-7964940 | None:intergenic | 35.0% | |
| ! | ATCATTCTGGAAGATGAAAC+GGG | + | chr7.2:7964876-7964895 | None:intergenic | 35.0% |
| ! | CTGAAGCTGAACTTTTTAAC+TGG | - | chr7.2:7964685-7964704 | MS.gene050287:CDS | 35.0% |
| !! | GAAGAATTTTCTAGTAGGCA+TGG | + | chr7.2:7964943-7964962 | None:intergenic | 35.0% |
| AACTCCTTCCAAAACCGAAA+AGG | + | chr7.2:7965132-7965151 | None:intergenic | 40.0% | |
| ATCATATTCTCGGAAGGTCT+TGG | + | chr7.2:7964915-7964934 | None:intergenic | 40.0% | |
| ATTCTTCCAACAATCTGCTC+CGG | - | chr7.2:7964956-7964975 | MS.gene050287:CDS | 40.0% | |
| CTTGAGATAGATCGAAACTC+CGG | + | chr7.2:7964779-7964798 | None:intergenic | 40.0% | |
| GAGTTGGAAGAACTCTCAAA+GGG | - | chr7.2:7965147-7965166 | MS.gene050287:CDS | 40.0% | |
| TTCGATCTATCTCAAGACTC+CGG | - | chr7.2:7964783-7964802 | MS.gene050287:CDS | 40.0% | |
| ! | ATTTTCAGATTCGGAGCTGT+CGG | + | chr7.2:7964715-7964734 | None:intergenic | 40.0% |
| ! | GAGAACTACCTTTTCGGTTT+TGG | - | chr7.2:7965121-7965140 | MS.gene050287:CDS | 40.0% |
| ! | TCATTCTGGAAGATGAAACG+GGG | + | chr7.2:7964875-7964894 | None:intergenic | 40.0% |
| !!! | ACTACCTTTTCGGTTTTGGA+AGG | - | chr7.2:7965125-7965144 | MS.gene050287:CDS | 40.0% |
| !!! | TTTTCGGTTTTGGAAGGAGT+TGG | - | chr7.2:7965131-7965150 | MS.gene050287:CDS | 40.0% |
| ATGAAACGGGGGATTTACCA+CGG | + | chr7.2:7964863-7964882 | None:intergenic | 45.0% | |
| CGGAAACGAAGGAATCATTC+TGG | + | chr7.2:7964889-7964908 | None:intergenic | 45.0% | |
| GGAGTTGGAAGAACTCTCAA+AGG | - | chr7.2:7965146-7965165 | MS.gene050287:CDS | 45.0% | |
| TGATAGGACAGCAAGTATGC+CGG | + | chr7.2:7964805-7964824 | None:intergenic | 45.0% | |
| ! | CATTCTGGAAGATGAAACGG+GGG | + | chr7.2:7964874-7964893 | None:intergenic | 45.0% |
| ! | TAGGGATGTTGATGAGCTTG+CGG | - | chr7.2:7965019-7965038 | MS.gene050287:CDS | 45.0% |
| ! | TTCGCCGAGAACTACCTTTT+CGG | - | chr7.2:7965115-7965134 | MS.gene050287:CDS | 45.0% |
| ! | TTGGATGATGATGACGACGA+CGG | - | chr7.2:7965044-7965063 | MS.gene050287:CDS | 45.0% |
| CAAAGGGAGAGATCTTCGTC+AGG | - | chr7.2:7965163-7965182 | MS.gene050287:CDS | 50.0% | |
| CCTCATGAGATTGTTGCGAG+AGG | - | chr7.2:7965083-7965102 | MS.gene050287:CDS | 50.0% | |
| CCTCTCGCAACAATCTCATG+AGG | + | chr7.2:7965086-7965105 | None:intergenic | 50.0% | |
| CTCGCAACAATCTCATGAGG+CGG | + | chr7.2:7965083-7965102 | None:intergenic | 50.0% | |
| GGCATAATCGGAACCTTCAC+CGG | + | chr7.2:7964978-7964997 | None:intergenic | 50.0% | |
| TCATCAACATCCCTACGCCT+CGG | + | chr7.2:7965014-7965033 | None:intergenic | 50.0% | |
| TTCTCGGAAGGTCTTGGTCT+CGG | + | chr7.2:7964909-7964928 | None:intergenic | 50.0% | |
| ! | TGTTGATGAGCTTGCGGTGT+TGG | - | chr7.2:7965025-7965044 | MS.gene050287:CDS | 50.0% |
| !! | AATCGACTCGGCGGCATAAT+CGG | + | chr7.2:7964990-7965009 | None:intergenic | 50.0% |
| !! | GGCATACTTGCTGTCCTATC+AGG | - | chr7.2:7964804-7964823 | MS.gene050287:CDS | 50.0% |
| AACGCTGTTCTGCGCCAAAC+CGG | - | chr7.2:7965191-7965210 | MS.gene050287:CDS | 55.0% | |
| AGCTTCAGTGAGCTCATCGC+CGG | + | chr7.2:7964673-7964692 | None:intergenic | 55.0% | |
| CATCAACATCCCTACGCCTC+GGG | + | chr7.2:7965013-7965032 | None:intergenic | 55.0% | |
| CCAACAATCTGCTCCGGTGA+AGG | - | chr7.2:7964962-7964981 | MS.gene050287:CDS | 55.0% | |
| CCTTCACCGGAGCAGATTGT+TGG | + | chr7.2:7964965-7964984 | None:intergenic | 55.0% | |
| CGAAGGAGCTAACTCGTCAC+CGG | - | chr7.2:7964757-7964776 | MS.gene050287:CDS | 55.0% | |
| CGAGTTAGCTCCTTCGGTTG+AGG | + | chr7.2:7964753-7964772 | None:intergenic | 55.0% | |
| CGGTGACGAGTTAGCTCCTT+CGG | + | chr7.2:7964759-7964778 | None:intergenic | 55.0% | |
| GAGATTGTTGCGAGAGGCTC+TGG | - | chr7.2:7965089-7965108 | MS.gene050287:CDS | 55.0% | |
| GGGGATTTACCACGGAACAC+CGG | + | chr7.2:7964855-7964874 | None:intergenic | 55.0% | |
| GGTCTTGGTCTCGGAAACGA+AGG | + | chr7.2:7964900-7964919 | None:intergenic | 55.0% | |
| GGTGGAAGGGGAGAAGTTGA+AGG | + | chr7.2:7964640-7964659 | None:intergenic | 55.0% | |
| GTTAGCTCCTTCGGTTGAGG+TGG | + | chr7.2:7964750-7964769 | None:intergenic | 55.0% | |
| TTCAGATTCGGAGCTGTCGG+AGG | + | chr7.2:7964712-7964731 | None:intergenic | 55.0% | |
| ! | TGATGATGACGACGACGGCA+AGG | - | chr7.2:7965049-7965068 | MS.gene050287:CDS | 55.0% |
| ACGTCCACCACCTCAACCGA+AGG | - | chr7.2:7964740-7964759 | MS.gene050287:CDS | 60.0% | |
| AGCTCCTTCGGTTGAGGTGG+TGG | + | chr7.2:7964747-7964766 | None:intergenic | 60.0% | |
| CTACGCCTCGGGAATCGACT+CGG | + | chr7.2:7965002-7965021 | None:intergenic | 60.0% | |
| GGGAATCGGCGGTGATAGGA+AGG | + | chr7.2:7964591-7964610 | None:intergenic | 60.0% | |
| TCGGCGGTGATAGGAAGGTG+TGG | + | chr7.2:7964586-7964605 | None:intergenic | 60.0% | |
| TTCAGTGAGCTCATCGCCGG+CGG | + | chr7.2:7964670-7964689 | None:intergenic | 60.0% | |
| ! | CGGCGGTGATAGGAAGGTGT+GGG | + | chr7.2:7964585-7964604 | None:intergenic | 60.0% |
| ! | GAGTCGATTCCCGAGGCGTA+GGG | - | chr7.2:7965001-7965020 | MS.gene050287:CDS | 60.0% |
| ! | GGCGGTGATAGGAAGGTGTG+GGG | + | chr7.2:7964584-7964603 | None:intergenic | 60.0% |
| !! | AGAAGTTGAAGGCGCCGAGG+AGG | + | chr7.2:7964629-7964648 | None:intergenic | 60.0% |
| CGATTCACCGCGGCGGTTGT+CGG | + | chr7.2:7964832-7964851 | None:intergenic | 65.0% | |
| GGAACACCGGCGATTCACCG+CGG | + | chr7.2:7964842-7964861 | None:intergenic | 65.0% | |
| GGAGGGGAATCGGCGGTGAT+AGG | + | chr7.2:7964595-7964614 | None:intergenic | 65.0% | |
| GGCGGTTGTCGGAGCCTGAT+AGG | + | chr7.2:7964821-7964840 | None:intergenic | 65.0% | |
| GGTCGGAGGAGGAGGGGAAT+CGG | + | chr7.2:7964605-7964624 | None:intergenic | 65.0% | |
| GGTGAATCGCCGGTGTTCCG+TGG | - | chr7.2:7964843-7964862 | MS.gene050287:CDS | 65.0% | |
| ! | CGAGTCGATTCCCGAGGCGT+AGG | - | chr7.2:7965000-7965019 | MS.gene050287:CDS | 65.0% |
| !! | AGTTGAAGGCGCCGAGGAGG+CGG | + | chr7.2:7964626-7964645 | None:intergenic | 65.0% |
| !! | GGGAGAAGTTGAAGGCGCCG+AGG | + | chr7.2:7964632-7964651 | None:intergenic | 65.0% |
| ACACCGGCGATTCACCGCGG+CGG | + | chr7.2:7964839-7964858 | None:intergenic | 70.0% | |
| AGGAGGCGGTCGGAGGAGGA+GGG | + | chr7.2:7964612-7964631 | None:intergenic | 70.0% | |
| AGTGAGCTCATCGCCGGCGG+CGG | + | chr7.2:7964667-7964686 | None:intergenic | 70.0% | |
| CAACCGCCGCGGTGAATCGC+CGG | - | chr7.2:7964833-7964852 | MS.gene050287:CDS | 70.0% | |
| CGGAGGAGGAGGGGAATCGG+CGG | + | chr7.2:7964602-7964621 | None:intergenic | 70.0% | |
| TCAGGCTCCGACAACCGCCG+CGG | - | chr7.2:7964822-7964841 | MS.gene050287:CDS | 70.0% | |
| TCCTCCTCCGACCGCCTCCT+CGG | - | chr7.2:7964612-7964631 | MS.gene050287:CDS | 70.0% | |
| ! | TGCCGCCGAGTCGATTCCCG+AGG | - | chr7.2:7964994-7965013 | MS.gene050287:CDS | 70.0% |
| !! | CGCCTCGGGAATCGACTCGG+CGG | + | chr7.2:7964999-7965018 | None:intergenic | 70.0% |
| CCTTCCACCACCTCCGCCGC+CGG | - | chr7.2:7964651-7964670 | MS.gene050287:CDS | 75.0% | |
| GAGGAGGCGGTCGGAGGAGG+AGG | + | chr7.2:7964613-7964632 | None:intergenic | 75.0% | |
| GGAGGCGGTCGGAGGAGGAG+GGG | + | chr7.2:7964611-7964630 | None:intergenic | 75.0% | |
| !! | CGGCGGCGGAGGTGGTGGAA+GGG | + | chr7.2:7964653-7964672 | None:intergenic | 75.0% |
| !! | GAAGGCGCCGAGGAGGCGGT+CGG | + | chr7.2:7964622-7964641 | None:intergenic | 75.0% |
| !! | GGCGGCGGAGGTGGTGGAAG+GGG | + | chr7.2:7964652-7964671 | None:intergenic | 75.0% |
| ! | ATCGCCGGCGGCGGAGGTGG+TGG | + | chr7.2:7964658-7964677 | None:intergenic | 80.0% |
| ! | CTCATCGCCGGCGGCGGAGG+TGG | + | chr7.2:7964661-7964680 | None:intergenic | 80.0% |
| ! | GAGCTCATCGCCGGCGGCGG+AGG | + | chr7.2:7964664-7964683 | None:intergenic | 80.0% |
| ! | GCCGAGGAGGCGGTCGGAGG+AGG | + | chr7.2:7964616-7964635 | None:intergenic | 80.0% |
| !!! | CCGGCGGCGGAGGTGGTGGA+AGG | + | chr7.2:7964654-7964673 | None:intergenic | 80.0% |
| !! | GGCGCCGAGGAGGCGGTCGG+AGG | + | chr7.2:7964619-7964638 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7964576 | 7965226 | 7964576 | ID=MS.gene050287 |
| chr7.2 | mRNA | 7964576 | 7965226 | 7964576 | ID=MS.gene050287.t1;Parent=MS.gene050287 |
| chr7.2 | exon | 7964576 | 7965226 | 7964576 | ID=MS.gene050287.t1.exon1;Parent=MS.gene050287.t1 |
| chr7.2 | CDS | 7964576 | 7965226 | 7964576 | ID=cds.MS.gene050287.t1;Parent=MS.gene050287.t1 |
| Gene Sequence |
| Protein sequence |
